Query 014856
Match_columns 417
No_of_seqs 314 out of 1591
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0556 Aspartyl-tRNA syntheta 100.0 3E-100 6E-105 752.8 30.0 391 12-417 5-415 (533)
2 PLN02850 aspartate-tRNA ligase 100.0 2.9E-86 6.4E-91 697.0 35.6 390 13-417 5-412 (530)
3 PTZ00401 aspartyl-tRNA synthet 100.0 7.8E-81 1.7E-85 656.7 34.6 373 18-417 7-432 (550)
4 KOG1885 Lysyl-tRNA synthetase 100.0 1.1E-72 2.4E-77 564.9 14.8 363 18-410 5-403 (560)
5 COG0017 AsnS Aspartyl/asparagi 100.0 1E-68 2.2E-73 543.6 30.1 292 93-414 5-317 (435)
6 PLN02502 lysyl-tRNA synthetase 100.0 7.1E-68 1.5E-72 558.7 29.7 346 16-397 3-387 (553)
7 PRK05159 aspC aspartyl-tRNA sy 100.0 4.9E-66 1.1E-70 535.1 32.5 297 92-416 4-318 (437)
8 TIGR00458 aspS_arch aspartyl-t 100.0 3.5E-66 7.6E-71 534.6 30.6 294 94-415 2-313 (428)
9 PLN02221 asparaginyl-tRNA synt 100.0 3.8E-63 8.2E-68 523.0 29.3 285 100-414 46-455 (572)
10 TIGR00499 lysS_bact lysyl-tRNA 100.0 4.1E-63 8.8E-68 519.1 25.5 285 76-396 21-332 (496)
11 PRK03932 asnC asparaginyl-tRNA 100.0 5E-62 1.1E-66 506.6 31.1 291 95-414 6-334 (450)
12 PLN02532 asparagine-tRNA synth 100.0 1.9E-61 4E-66 511.9 29.6 268 116-414 148-516 (633)
13 TIGR00457 asnS asparaginyl-tRN 100.0 1.1E-60 2.3E-65 496.5 30.8 285 101-414 13-336 (453)
14 PRK12445 lysyl-tRNA synthetase 100.0 7.4E-61 1.6E-65 502.4 28.7 277 76-390 33-337 (505)
15 PRK00484 lysS lysyl-tRNA synth 100.0 1.9E-60 4.2E-65 498.7 29.6 283 76-396 22-329 (491)
16 PTZ00417 lysine-tRNA ligase; P 100.0 1.4E-60 3E-65 505.2 27.7 307 53-387 74-410 (585)
17 PLN02603 asparaginyl-tRNA synt 100.0 7.9E-60 1.7E-64 497.7 28.8 283 101-414 104-447 (565)
18 PTZ00425 asparagine-tRNA ligas 100.0 1.3E-58 2.7E-63 488.1 28.9 287 101-414 78-469 (586)
19 PTZ00385 lysyl-tRNA synthetase 100.0 8.8E-58 1.9E-62 485.7 28.2 307 79-412 79-413 (659)
20 PRK02983 lysS lysyl-tRNA synth 100.0 6.5E-58 1.4E-62 514.6 26.6 283 76-396 629-932 (1094)
21 PLN02903 aminoacyl-tRNA ligase 100.0 3.4E-56 7.3E-61 473.8 28.4 267 93-397 61-351 (652)
22 COG1190 LysU Lysyl-tRNA synthe 100.0 8.6E-57 1.9E-61 459.0 21.3 283 75-395 28-336 (502)
23 TIGR00459 aspS_bact aspartyl-t 100.0 1.9E-55 4.1E-60 465.9 28.6 257 93-395 4-283 (583)
24 PRK00476 aspS aspartyl-tRNA sy 100.0 1.2E-54 2.6E-59 462.3 28.2 260 93-397 6-288 (588)
25 PRK12820 bifunctional aspartyl 100.0 1.4E-54 3E-59 465.4 28.5 273 93-396 7-301 (706)
26 COG0173 AspS Aspartyl-tRNA syn 100.0 6.3E-54 1.4E-58 440.2 25.7 260 93-395 4-286 (585)
27 KOG0555 Asparaginyl-tRNA synth 100.0 4.7E-51 1E-55 402.3 26.3 351 15-415 50-429 (545)
28 KOG0554 Asparaginyl-tRNA synth 100.0 1.3E-50 2.9E-55 400.2 21.2 282 99-415 15-334 (446)
29 cd00776 AsxRS_core Asx tRNA sy 100.0 2.7E-50 5.8E-55 402.7 19.4 206 208-415 2-209 (322)
30 PRK06462 asparagine synthetase 100.0 5.6E-48 1.2E-52 387.7 17.2 201 208-414 8-217 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 4.1E-47 9E-52 381.4 13.8 194 209-412 1-216 (335)
32 KOG2411 Aspartyl-tRNA syntheta 100.0 3.3E-45 7.2E-50 369.1 19.8 265 93-396 36-325 (628)
33 TIGR00462 genX lysyl-tRNA synt 100.0 1.8E-41 4E-46 336.5 14.6 163 230-416 1-186 (304)
34 cd00775 LysRS_core Lys_tRNA sy 100.0 2E-40 4.4E-45 332.4 18.6 178 224-412 2-182 (329)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 3.3E-37 7.1E-42 301.2 14.5 152 230-390 1-154 (269)
36 cd00777 AspRS_core Asp tRNA sy 100.0 3.9E-36 8.4E-41 295.2 15.8 151 230-403 1-154 (280)
37 PRK09350 poxB regulator PoxA; 100.0 7.4E-34 1.6E-38 282.4 15.0 163 227-415 2-190 (306)
38 COG2269 Truncated, possibly in 99.9 1.8E-27 4E-32 228.0 10.7 139 230-396 16-161 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.7 3.2E-16 7E-21 138.0 11.4 110 95-225 5-134 (135)
40 cd04322 LysRS_N LysRS_N: N-ter 99.5 4.5E-14 9.8E-19 119.8 10.4 83 113-221 25-108 (108)
41 PRK09537 pylS pyrolysyl-tRNA s 99.4 2.7E-13 5.9E-18 139.2 9.9 136 207-347 179-333 (417)
42 cd04319 PhAsnRS_like_N PhAsnRS 99.3 3.5E-11 7.7E-16 101.2 11.0 79 113-219 25-103 (103)
43 cd04316 ND_PkAspRS_like_N ND_P 99.3 3.9E-11 8.5E-16 101.8 11.3 86 95-186 3-106 (108)
44 cd04320 AspRS_cyto_N AspRS_cyt 99.3 4.7E-11 1E-15 100.2 11.4 75 113-187 26-102 (102)
45 cd00768 class_II_aaRS-like_cor 99.2 4.4E-11 9.6E-16 110.6 7.4 115 232-347 1-132 (211)
46 TIGR02367 PylS pyrrolysyl-tRNA 98.9 4.8E-09 1E-13 108.2 10.5 112 232-347 241-369 (453)
47 cd04100 Asp_Lys_Asn_RS_N Asp_L 98.7 1E-07 2.2E-12 77.2 10.0 61 113-177 25-85 (85)
48 cd00496 PheRS_alpha_core Pheny 98.6 2.6E-07 5.6E-12 87.9 9.8 110 235-348 5-132 (218)
49 cd04323 AsnRS_cyto_like_N AsnR 98.5 5.4E-07 1.2E-11 72.9 9.4 60 113-177 25-84 (84)
50 PF01409 tRNA-synt_2d: tRNA sy 98.4 1.1E-06 2.5E-11 85.3 10.2 116 234-350 20-156 (247)
51 cd00773 HisRS-like_core Class 98.4 1.4E-06 3E-11 84.9 9.9 101 230-331 2-116 (261)
52 PF00587 tRNA-synt_2b: tRNA sy 98.4 1.2E-06 2.6E-11 79.9 8.0 115 232-348 1-135 (173)
53 cd04321 ScAspRS_mt_like_N ScAs 98.3 4.7E-06 1E-10 67.8 9.7 66 107-177 21-86 (86)
54 TIGR00468 pheS phenylalanyl-tR 98.3 4.1E-06 8.8E-11 83.4 10.1 113 233-349 74-203 (294)
55 PRK00488 pheS phenylalanyl-tRN 98.2 5.4E-06 1.2E-10 83.7 10.2 111 234-349 111-238 (339)
56 cd04318 EcAsnRS_like_N EcAsnRS 98.2 7.8E-06 1.7E-10 65.7 9.1 52 116-176 30-81 (82)
57 PRK00037 hisS histidyl-tRNA sy 98.2 9.9E-06 2.2E-10 83.8 11.1 118 228-346 16-150 (412)
58 cd00670 Gly_His_Pro_Ser_Thr_tR 98.2 9.1E-06 2E-10 77.1 9.3 102 230-331 2-125 (235)
59 cd00778 ProRS_core_arch_euk Pr 98.1 6.7E-06 1.5E-10 80.4 6.8 116 229-345 31-169 (261)
60 PRK04172 pheS phenylalanyl-tRN 98.0 2.4E-05 5.2E-10 83.1 10.8 117 230-347 232-401 (489)
61 TIGR00442 hisS histidyl-tRNA s 98.0 2.2E-05 4.8E-10 80.8 10.1 118 228-346 12-149 (397)
62 cd00771 ThrRS_core Threonyl-tR 98.0 3.2E-05 7E-10 77.0 10.3 99 230-328 30-146 (298)
63 cd00772 ProRS_core Prolyl-tRNA 97.9 6.4E-05 1.4E-09 73.7 10.9 113 230-344 32-168 (264)
64 TIGR00409 proS_fam_II prolyl-t 97.9 8.6E-05 1.9E-09 80.3 11.8 123 228-351 45-188 (568)
65 PTZ00326 phenylalanyl-tRNA syn 97.9 4.7E-05 1E-09 80.4 9.4 51 296-347 357-408 (494)
66 cd00779 ProRS_core_prok Prolyl 97.9 4.9E-05 1.1E-09 74.0 8.8 114 230-344 31-162 (255)
67 PLN02853 Probable phenylalanyl 97.9 5.5E-05 1.2E-09 79.6 9.3 50 297-347 343-393 (492)
68 TIGR00443 hisZ_biosyn_reg ATP 97.9 6.8E-05 1.5E-09 75.1 9.6 116 229-346 7-139 (314)
69 PRK09194 prolyl-tRNA synthetas 97.8 0.0001 2.2E-09 79.7 11.3 122 229-351 46-188 (565)
70 PF13393 tRNA-synt_His: Histid 97.8 0.00014 3.1E-09 72.2 11.0 117 228-345 8-139 (311)
71 COG0016 PheS Phenylalanyl-tRNA 97.8 0.00011 2.4E-09 74.0 10.1 112 234-350 114-246 (335)
72 PRK12293 hisZ ATP phosphoribos 97.8 0.00013 2.9E-09 72.2 10.1 112 229-347 18-139 (281)
73 cd00774 GlyRS-like_core Glycyl 97.8 5.4E-05 1.2E-09 73.7 7.0 95 229-329 31-142 (254)
74 PLN02908 threonyl-tRNA synthet 97.8 0.00011 2.4E-09 81.2 10.1 120 227-348 318-455 (686)
75 cd00770 SerRS_core Seryl-tRNA 97.8 0.0001 2.2E-09 73.5 8.8 115 228-346 50-185 (297)
76 PLN02788 phenylalanine-tRNA sy 97.7 0.00012 2.6E-09 75.6 9.4 111 236-350 73-213 (402)
77 PRK12292 hisZ ATP phosphoribos 97.7 0.00013 2.9E-09 75.3 9.3 119 228-347 15-151 (391)
78 PRK12305 thrS threonyl-tRNA sy 97.7 0.00016 3.5E-09 78.2 9.8 102 228-330 204-324 (575)
79 TIGR00418 thrS threonyl-tRNA s 97.7 0.00019 4.1E-09 77.4 9.8 116 229-345 199-339 (563)
80 PRK00413 thrS threonyl-tRNA sy 97.6 0.00033 7.1E-09 76.7 11.1 100 228-327 268-386 (638)
81 PRK12420 histidyl-tRNA synthet 97.6 0.00038 8.2E-09 72.6 10.7 119 228-347 16-152 (423)
82 TIGR00408 proS_fam_I prolyl-tR 97.6 0.00015 3.3E-09 76.7 7.8 115 230-345 38-175 (472)
83 TIGR00414 serS seryl-tRNA synt 97.6 0.00031 6.8E-09 73.3 9.9 115 228-346 171-306 (418)
84 PRK12444 threonyl-tRNA synthet 97.6 0.00032 6.9E-09 76.9 10.1 113 230-344 274-404 (639)
85 CHL00201 syh histidine-tRNA sy 97.6 0.00033 7.1E-09 73.3 9.5 117 229-346 17-154 (430)
86 PLN02972 Histidyl-tRNA synthet 97.5 0.00041 8.8E-09 76.8 10.3 118 226-346 337-470 (763)
87 PRK05431 seryl-tRNA synthetase 97.5 0.00043 9.3E-09 72.4 9.9 115 228-346 168-304 (425)
88 PRK14799 thrS threonyl-tRNA sy 97.5 0.0003 6.4E-09 75.7 8.7 118 228-347 166-301 (545)
89 PRK08661 prolyl-tRNA synthetas 97.5 0.00022 4.9E-09 75.6 7.7 115 229-345 43-180 (477)
90 PLN02530 histidine-tRNA ligase 97.5 0.00053 1.1E-08 72.9 10.1 117 228-347 82-217 (487)
91 PRK03991 threonyl-tRNA synthet 97.4 0.00068 1.5E-08 74.0 10.3 121 228-349 225-364 (613)
92 PRK12421 ATP phosphoribosyltra 97.4 0.001 2.2E-08 68.8 11.1 118 229-347 20-154 (392)
93 PRK12325 prolyl-tRNA synthetas 97.4 0.001 2.2E-08 69.8 10.5 114 230-344 47-178 (439)
94 PLN02837 threonine-tRNA ligase 97.3 0.00084 1.8E-08 73.4 9.0 118 228-347 245-381 (614)
95 PLN02678 seryl-tRNA synthetase 97.2 0.00056 1.2E-08 71.9 6.4 115 229-345 173-310 (448)
96 PRK12295 hisZ ATP phosphoribos 97.2 0.0019 4.2E-08 66.4 9.9 108 235-346 9-132 (373)
97 PF01336 tRNA_anti-codon: OB-f 96.9 0.0097 2.1E-07 45.8 9.0 51 113-175 25-75 (75)
98 COG0124 HisS Histidyl-tRNA syn 96.7 0.0055 1.2E-07 64.1 8.7 117 229-346 17-153 (429)
99 KOG2784 Phenylalanyl-tRNA synt 96.6 0.0026 5.7E-08 64.2 5.1 59 285-346 322-383 (483)
100 PLN02320 seryl-tRNA synthetase 96.6 0.0032 7E-08 66.9 5.6 116 230-349 233-370 (502)
101 PRK04173 glycyl-tRNA synthetas 96.5 0.0073 1.6E-07 63.8 7.7 31 230-260 38-70 (456)
102 PRK12294 hisZ ATP phosphoribos 96.4 0.026 5.7E-07 55.7 10.8 95 227-329 4-109 (272)
103 COG0442 ProS Prolyl-tRNA synth 96.3 0.0099 2.1E-07 63.3 7.6 116 229-345 46-179 (500)
104 TIGR00470 sepS O-phosphoseryl- 96.2 0.0057 1.2E-07 64.2 5.0 52 296-347 207-259 (533)
105 TIGR00415 serS_MJ seryl-tRNA s 95.8 0.041 8.8E-07 58.6 9.3 117 228-346 221-386 (520)
106 PRK00960 seryl-tRNA synthetase 95.7 0.016 3.5E-07 62.0 5.6 116 228-346 221-386 (517)
107 COG0172 SerS Seryl-tRNA synthe 95.6 0.037 7.9E-07 57.8 7.9 115 228-346 172-307 (429)
108 COG0423 GRS1 Glycyl-tRNA synth 94.5 0.077 1.7E-06 56.4 6.5 30 231-260 41-72 (558)
109 KOG2324 Prolyl-tRNA synthetase 94.5 0.1 2.3E-06 53.0 7.1 108 230-338 52-178 (457)
110 PRK09616 pheT phenylalanyl-tRN 94.4 0.19 4.2E-06 54.4 9.6 112 234-346 362-488 (552)
111 COG0441 ThrS Threonyl-tRNA syn 93.5 0.096 2.1E-06 57.0 5.0 117 231-349 221-355 (589)
112 TIGR00389 glyS_dimeric glycyl- 93.1 0.14 3.1E-06 55.3 5.4 31 230-260 37-68 (551)
113 TIGR00469 pheS_mito phenylalan 92.5 0.55 1.2E-05 49.6 8.7 50 272-324 102-160 (460)
114 KOG1936 Histidyl-tRNA syntheta 92.4 0.47 1E-05 49.4 7.9 100 228-329 72-184 (518)
115 cd00769 PheRS_beta_core Phenyl 92.0 0.4 8.6E-06 44.7 6.4 109 235-347 4-137 (198)
116 COG3705 HisZ ATP phosphoribosy 91.4 0.57 1.2E-05 48.6 7.2 115 230-345 17-146 (390)
117 PF03590 AsnA: Aspartate-ammon 87.7 11 0.00025 36.5 12.4 119 234-353 7-144 (244)
118 KOG2509 Seryl-tRNA synthetase 87.3 1.4 3E-05 46.0 6.4 118 228-346 183-327 (455)
119 KOG1035 eIF-2alpha kinase GCN2 84.0 2.8 6E-05 49.0 7.3 119 228-350 930-1058(1351)
120 PTZ00213 asparagine synthetase 79.9 29 0.00063 35.4 12.0 122 230-352 8-147 (348)
121 PRK07459 single-stranded DNA-b 78.3 24 0.00052 30.5 9.7 59 114-178 43-104 (121)
122 COG1107 Archaea-specific RecJ- 78.1 1.4 3E-05 47.7 2.2 70 93-176 203-289 (715)
123 cd00645 AsnA Asparagine synthe 77.9 20 0.00043 36.0 10.0 107 245-352 17-136 (309)
124 PRK06752 single-stranded DNA-b 77.7 28 0.0006 29.5 9.8 45 134-178 60-106 (112)
125 PRK07275 single-stranded DNA-b 77.5 21 0.00045 32.7 9.5 59 114-178 46-106 (162)
126 PRK07080 hypothetical protein; 76.8 3.1 6.8E-05 41.9 4.2 48 298-347 153-201 (317)
127 TIGR00471 pheT_arch phenylalan 76.5 8.9 0.00019 41.7 7.9 112 233-347 364-491 (551)
128 PRK06751 single-stranded DNA-b 75.6 27 0.00058 32.3 9.7 57 116-178 48-106 (173)
129 PF00436 SSB: Single-strand bi 75.5 13 0.00029 30.2 7.1 56 114-175 47-104 (104)
130 PRK06958 single-stranded DNA-b 74.8 27 0.00059 32.6 9.6 45 134-178 65-111 (182)
131 cd04496 SSB_OBF SSB_OBF: A sub 74.7 22 0.00048 28.5 8.2 57 113-175 42-100 (100)
132 cd04479 RPA3 RPA3: A subfamily 73.4 18 0.0004 30.2 7.4 54 101-176 12-79 (101)
133 PRK08486 single-stranded DNA-b 72.6 34 0.00075 31.8 9.7 44 135-178 63-108 (182)
134 PRK02801 primosomal replicatio 70.4 26 0.00056 29.3 7.7 52 116-175 49-100 (101)
135 PRK06863 single-stranded DNA-b 70.0 27 0.00059 32.1 8.3 57 116-178 53-111 (168)
136 PRK06293 single-stranded DNA-b 69.5 51 0.0011 30.2 9.9 44 135-178 57-102 (161)
137 PRK05425 asparagine synthetase 69.0 69 0.0015 32.5 11.5 107 245-352 28-147 (327)
138 PRK13732 single-stranded DNA-b 67.7 46 0.001 30.8 9.4 44 135-178 68-115 (175)
139 PLN02265 probable phenylalanyl 66.5 18 0.00038 39.9 7.4 114 233-347 399-528 (597)
140 PRK08763 single-stranded DNA-b 64.5 67 0.0015 29.4 9.7 44 135-178 66-111 (164)
141 PRK07274 single-stranded DNA-b 64.2 28 0.00061 30.4 7.0 45 134-178 60-105 (131)
142 COG2965 PriB Primosomal replic 63.7 32 0.0007 29.0 6.7 61 113-175 42-102 (103)
143 cd00673 AlaRS_core Alanyl-tRNA 62.5 35 0.00075 33.1 7.7 98 234-346 2-109 (232)
144 COG2502 AsnA Asparagine synthe 62.1 1.7E+02 0.0036 29.1 12.2 118 234-352 13-145 (330)
145 PRK14894 glycyl-tRNA synthetas 60.5 5.8 0.00012 42.7 2.3 30 298-327 167-198 (539)
146 TIGR00669 asnA aspartate--ammo 60.1 1.4E+02 0.003 30.5 11.6 122 230-352 5-145 (330)
147 PF04076 BOF: Bacterial OB fol 59.4 41 0.00088 28.5 6.8 63 96-173 26-102 (103)
148 cd04474 RPA1_DBD_A RPA1_DBD_A: 58.7 54 0.0012 27.3 7.5 59 107-171 39-98 (104)
149 PRK05813 single-stranded DNA-b 58.6 76 0.0017 30.5 9.4 45 134-178 160-210 (219)
150 PF08661 Rep_fac-A_3: Replicat 57.0 31 0.00068 29.0 5.8 42 101-154 15-72 (109)
151 TIGR02930 vnfG_nitrog V-contai 56.6 20 0.00043 30.6 4.4 50 368-417 41-90 (109)
152 TIGR02929 anfG_nitrog Fe-only 54.9 22 0.00049 30.3 4.4 50 368-417 41-90 (109)
153 PLN02734 glycyl-tRNA synthetas 54.8 4.7 0.0001 44.8 0.5 30 298-327 277-308 (684)
154 TIGR00621 ssb single stranded 53.6 77 0.0017 28.8 8.2 45 134-178 64-110 (164)
155 PF08496 Peptidase_S49_N: Pept 53.5 13 0.00028 33.8 3.1 24 19-42 61-84 (155)
156 cd04487 RecJ_OBF2_like RecJ_OB 51.0 48 0.001 26.0 5.6 50 113-175 24-73 (73)
157 PF03139 AnfG_VnfG: Vanadium/a 50.8 40 0.00086 28.9 5.3 51 367-417 43-93 (112)
158 PRK09010 single-stranded DNA-b 50.2 1.6E+02 0.0034 27.4 9.7 44 135-178 68-116 (177)
159 PRK08182 single-stranded DNA-b 49.5 1.3E+02 0.0027 27.0 8.7 50 135-184 68-120 (148)
160 COG3111 Periplasmic protein wi 49.2 68 0.0015 28.2 6.6 68 93-175 46-127 (128)
161 PRK10053 hypothetical protein; 46.8 67 0.0015 28.4 6.4 64 94-173 51-129 (130)
162 TIGR00156 conserved hypothetic 46.4 69 0.0015 28.2 6.3 64 94-173 47-125 (126)
163 PRK00036 primosomal replicatio 45.5 86 0.0019 26.8 6.6 52 116-178 48-99 (107)
164 PF00970 FAD_binding_6: Oxidor 45.1 1E+02 0.0023 24.5 7.0 36 113-151 59-94 (99)
165 PRK06253 O-phosphoseryl-tRNA s 44.1 24 0.00051 38.2 3.7 49 298-347 210-260 (529)
166 PRK05733 single-stranded DNA-b 42.4 61 0.0013 29.9 5.7 45 134-178 66-114 (172)
167 TIGR00617 rpa1 replication fac 41.0 1.3E+02 0.0027 33.4 8.8 60 113-178 225-285 (608)
168 PRK05813 single-stranded DNA-b 40.8 2.2E+02 0.0049 27.3 9.5 58 113-178 45-103 (219)
169 CHL00192 syfB phenylalanyl-tRN 40.5 80 0.0017 35.5 7.3 112 234-347 401-530 (704)
170 cd04483 hOBFC1_like hOBFC1_lik 40.5 1.8E+02 0.0038 23.8 7.6 32 136-174 60-91 (92)
171 PRK01584 alanyl-tRNA synthetas 37.8 87 0.0019 34.6 6.9 98 234-346 4-110 (594)
172 KOG2298 Glycyl-tRNA synthetase 37.3 8 0.00017 41.1 -1.0 26 301-326 214-241 (599)
173 PF13742 tRNA_anti_2: OB-fold 36.1 2.5E+02 0.0054 23.1 8.3 49 113-173 48-98 (99)
174 TIGR00472 pheT_bact phenylalan 34.8 90 0.002 35.6 6.7 105 238-347 498-629 (798)
175 PRK00629 pheT phenylalanyl-tRN 34.8 1.1E+02 0.0024 34.8 7.4 108 235-347 491-622 (791)
176 PRK07772 single-stranded DNA-b 34.3 1.8E+02 0.0038 27.3 7.5 51 116-172 54-106 (186)
177 PF01411 tRNA-synt_2c: tRNA sy 33.9 61 0.0013 35.3 5.0 95 236-345 2-111 (552)
178 PF15513 DUF4651: Domain of un 32.6 48 0.001 25.6 2.8 23 231-253 2-24 (62)
179 cd04485 DnaE_OBF DnaE_OBF: A s 32.2 1.5E+02 0.0033 22.1 5.8 50 113-175 28-77 (84)
180 cd04486 YhcR_OBF_like YhcR_OBF 30.2 82 0.0018 25.0 3.9 33 137-176 43-76 (78)
181 PRK15491 replication factor A; 30.2 1.5E+02 0.0033 30.7 6.9 53 113-178 103-156 (374)
182 PF10451 Stn1: Telomere regula 30.0 1E+02 0.0023 30.3 5.4 47 116-176 101-148 (256)
183 KOG1637 Threonyl-tRNA syntheta 29.9 41 0.00088 35.9 2.6 107 231-344 193-322 (560)
184 PRK06642 single-stranded DNA-b 28.0 1.4E+02 0.0031 26.8 5.5 44 135-178 68-117 (152)
185 PF12869 tRNA_anti-like: tRNA_ 27.4 1.2E+02 0.0025 26.3 4.8 45 104-153 85-131 (144)
186 KOG2851 Eukaryotic-type DNA pr 26.5 76 0.0016 32.8 3.8 61 279-339 61-125 (412)
187 PF12569 NARP1: NMDA receptor- 26.4 1E+02 0.0022 33.4 5.0 25 18-42 404-428 (517)
188 COG3689 Predicted membrane pro 26.4 1.2E+02 0.0026 30.0 5.0 77 100-178 171-262 (271)
189 PRK05853 hypothetical protein; 26.0 3.7E+02 0.008 24.5 7.9 53 114-172 42-96 (161)
190 PRK07373 DNA polymerase III su 25.8 2.3E+02 0.0051 30.1 7.5 60 102-174 278-359 (449)
191 cd04492 YhaM_OBF_like YhaM_OBF 25.3 3E+02 0.0065 20.7 7.2 51 113-177 28-78 (83)
192 cd04482 RPA2_OBF_like RPA2_OBF 25.2 3.7E+02 0.0081 21.8 7.5 52 113-178 26-77 (91)
193 COG0072 PheT Phenylalanyl-tRNA 24.2 1.2E+02 0.0027 33.7 5.3 113 232-348 352-488 (650)
194 PRK13902 alaS alanyl-tRNA synt 23.3 1.3E+02 0.0029 34.9 5.5 99 234-346 62-175 (900)
195 cd04478 RPA2_DBD_D RPA2_DBD_D: 23.1 3.8E+02 0.0083 21.2 7.7 36 136-178 45-80 (95)
196 PF03755 YicC_N: YicC-like fam 22.7 1E+02 0.0022 27.7 3.6 68 214-285 26-93 (159)
197 TIGR03683 A-tRNA_syn_arch alan 22.0 1.6E+02 0.0035 34.2 5.8 97 234-344 59-170 (902)
198 COG0013 AlaS Alanyl-tRNA synth 21.5 1.8E+02 0.004 33.6 6.0 97 234-345 9-115 (879)
199 PF02721 DUF223: Domain of unk 21.1 4.4E+02 0.0096 21.2 7.5 65 108-178 3-68 (95)
200 PRK00252 alaS alanyl-tRNA synt 20.5 2.4E+02 0.0052 32.6 6.8 96 234-346 5-112 (865)
No 1
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-100 Score=752.81 Aligned_cols=391 Identities=55% Similarity=0.809 Sum_probs=365.4
Q ss_pred cccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcCCccccchhhhhccCCCCCCCccccccCcc
Q 014856 12 EEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGRE 91 (417)
Q Consensus 12 ~~~~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~ 91 (417)
...+++|+ +|||++||.+|+.+|.++|+|++..+. ++..++++|.++++||++++.++|+. ++++
T Consensus 5 ~~~gE~gk-~SKK~~kk~a~~~eK~~~k~e~~~~~~--~a~~~~~ed~~~~~yg~~~l~~s~~~------------~~~~ 69 (533)
T KOG0556|consen 5 VALGEDGK-LSKKALKKLAKKLEKLRKKQEREETAA--KAREAEAEDYAKERYGDLSLIQSQSK------------EGRE 69 (533)
T ss_pred hhcccccc-ccHHHHHHHHHHHHHHHhhhhhhhhhh--hhhhhhhhhHHhhhcCcccccccccc------------cccc
Confidence 34466777 999999999999999999988664222 22235667889999999999988873 7889
Q ss_pred eeeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCC-CccHHHHHHHHcCCCCcEEEEEEEEec
Q 014856 92 WTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPD-SVSKEMVRFVRSLSNESIVDVIGVVSV 153 (417)
Q Consensus 92 ~~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~ 153 (417)
|+.+.+|+.+.+|+.|||||| ++.+|||++..+.+ .++++|++|+..|++||+|+|.|+|++
T Consensus 70 ~~~v~dl~~~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k 149 (533)
T KOG0556|consen 70 LTDVSDLDESNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVK 149 (533)
T ss_pred eeehhhhhhhcCCceEEEEEEEeeccccceEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEec
Confidence 999999999999999999999 78899999988655 389999999999999999999999999
Q ss_pred CCccCCCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHH
Q 014856 154 PDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 231 (417)
Q Consensus 154 ~~~~~~~~t-~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~ 231 (417)
++.+++||| +.+||++.+|+|||.+ +.||++++|+++++.+.+++...+..+.++++|||||||+||||||++|+|||
T Consensus 150 ~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFr 229 (533)
T KOG0556|consen 150 VKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFR 229 (533)
T ss_pred CCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheee
Confidence 999999998 5699999999999999 99999999999988766666666667889999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCC
Q 014856 232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 311 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s 311 (417)
+++.||.+||+||..+||+|||||+|+++++||||++|.|+||+.++||+|||||||||+|||||+|||+||||||||+|
T Consensus 230 iq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdS 309 (533)
T KOG0556|consen 230 IQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDS 309 (533)
T ss_pred hHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHH
Q 014856 312 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 391 (417)
Q Consensus 312 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~ 391 (417)
||+|||+||++||+||+|..||||+|+++.+|+.+||+.|.++|.++|+.++.+||+++++|.+|..|++|.||++||++
T Consensus 310 nthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLre 389 (533)
T KOG0556|consen 310 NTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLRE 389 (533)
T ss_pred chhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHhhcC
Q 014856 392 AGVEIDPLGDLNTESERKLGQLVLEK 417 (417)
Q Consensus 392 ~g~~~~~~~dl~te~E~~L~~~vkek 417 (417)
+|+++.+.+||+|+.||+||++|+||
T Consensus 390 aGvE~g~~dDlsTe~Ek~LG~lV~ek 415 (533)
T KOG0556|consen 390 AGVEMGDEDDLSTESEKKLGQLVREK 415 (533)
T ss_pred cCcccCCccccCChhHHHHHHHHHHH
Confidence 99999999999999999999999986
No 2
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=2.9e-86 Score=697.05 Aligned_cols=390 Identities=72% Similarity=1.080 Sum_probs=347.9
Q ss_pred ccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcCCccccchhhhhccCCCCCCCccccccCcce
Q 014856 13 EVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREW 92 (417)
Q Consensus 13 ~~~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~ 92 (417)
.++..+..+|||++||++|+++|++++++++++.. + ...++|..+++||++|+.|+++. .+.++|
T Consensus 5 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~yg~~~~~~~~~~-----------~~~~~~ 69 (530)
T PLN02850 5 AVEESGEKISKKAAKKAAAKAEKLRREATAKAAAA-S---LEDEDDPLASNYGDVPLEELQSK-----------VTGREW 69 (530)
T ss_pred cccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHh-h---hccccchhhccCCcccccccccc-----------cCCceE
Confidence 34556777999999999999999988766432211 1 12256888999999999876641 256789
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|++|+.++.|++|+|||| ++++||||+..+...++++|++|+..|+.||+|.|+|+|+.++
T Consensus 70 ~~i~~l~~~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 149 (530)
T PLN02850 70 TDVSDLGEELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPK 149 (530)
T ss_pred eEhhhcchhhCCCEEEEEEEEEEEccCCCeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccC
Confidence 99999999999999999999 6779999998754446889999999999999999999999988
Q ss_pred ccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHh
Q 014856 156 VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 234 (417)
Q Consensus 156 ~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs 234 (417)
.+++++++++||++++|+|||+| ++||++++|+++++.+.++....+..++++++++||+|||||||++.+++|||+||
T Consensus 150 ~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrirs 229 (530)
T PLN02850 150 KPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQS 229 (530)
T ss_pred cCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHHHHH
Confidence 88899999999999999999999 99999999988765433221112334678999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCc
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 314 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~ 314 (417)
.|+++||+||.++||+||+||+|+++++|||+++|.|+|||.++||+|||||||||++++|++|||+||||||||+|+|+
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~ 309 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTH 309 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCC
Q 014856 315 RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 394 (417)
Q Consensus 315 rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~ 394 (417)
|||||||||||||+|.++|+|+|+++|+||++++..+.++|..+|+.++.++|+..+++..+++|+||.||+++|++.|+
T Consensus 310 RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g~ 389 (530)
T PLN02850 310 RHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGV 389 (530)
T ss_pred ccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcCC
Confidence 99999999999999998899999999999999999999999999998988888888888889999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHhhcC
Q 014856 395 EIDPLGDLNTESERKLGQLVLEK 417 (417)
Q Consensus 395 ~~~~~~dl~te~E~~L~~~vkek 417 (417)
++++++||++++|+.||++|+++
T Consensus 390 ~~~~~~dl~~~~E~~Lg~~v~~~ 412 (530)
T PLN02850 390 EVDPLGDLNTESERKLGQLVKEK 412 (530)
T ss_pred CCCCCCCcchHHHHHHHHHHHHh
Confidence 98889999999999999999864
No 3
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.8e-81 Score=656.68 Aligned_cols=373 Identities=42% Similarity=0.672 Sum_probs=324.3
Q ss_pred CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcCCccccchhhhhccCCCCCCCccccccCcceeeecc
Q 014856 18 SQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGA 97 (417)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 97 (417)
....+|+++||++|+++|+++++++++....++ .++|..+++||.+|+.|++. .+.++|++|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~i~~ 70 (550)
T PTZ00401 7 DAGAPAVEKKQSDKEARKAARLAEEKARAAEKA----ALVEKYKDVFGAAPMVQSTT------------YKSRTFIPVAV 70 (550)
T ss_pred ccCcchhhHHHHHHHHHhHHHHHHHHHHHHhhh----hccchhhccCCccccccccc------------cCCCceEEHHH
Confidence 456688999999999999988887543222211 14688899999999986654 25678999999
Q ss_pred ccccc-CCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCC
Q 014856 98 LNGSL-KDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 159 (417)
Q Consensus 98 l~~~~-~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~ 159 (417)
|+... .|+.|+|||| ++++||||+..+.. ++++|++|+..|+.||+|+|+|+|+.++.+++
T Consensus 71 l~~~~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~~iQ~v~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 149 (550)
T PTZ00401 71 LSKPELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGD-VPKEMIDFIGQIPTESIVDVEATVCKVEQPIT 149 (550)
T ss_pred CCccccCCCEEEEEEEEEEEecCCCeEEEEEEeCCcCEEEEEECCCc-cCHHHHHHHhcCCCCCEEEEEEEEEecCccCC
Confidence 98777 8999999999 66799999986432 67899999999999999999999999877766
Q ss_pred CCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHHH
Q 014856 160 GAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVG 237 (417)
Q Consensus 160 ~~t-~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i~ 237 (417)
+++ +++||++++|+|||+| ++||++++|+++++. .....++++|||+|||||||++.++++|++||.|+
T Consensus 150 ~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~---------~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i~ 220 (550)
T PTZ00401 150 STSHSDIELKVKKIHTVTESLRTLPFTLEDASRKES---------DEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRVC 220 (550)
T ss_pred CCCCccEEEEeeEEEEEeCCCCCCCCCccccccccc---------ccccccChhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 665 6799999999999999 899999998876432 12445799999999999999999999999999999
Q ss_pred HHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcccc
Q 014856 238 NIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHL 317 (417)
Q Consensus 238 ~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl 317 (417)
++||+||.++||+||+||+|+++++|||+++|.++|||.++||+|||||||||++++||+|||+||||||||+++|+|||
T Consensus 221 ~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl 300 (550)
T PTZ00401 221 QYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHL 300 (550)
T ss_pred HHHHHHHHHCCCEEEeCCccccCCCCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCC------------------------
Q 014856 318 CEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKY------------------------ 373 (417)
Q Consensus 318 ~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~------------------------ 373 (417)
||||||||||+|.++|+|+|+++|+||.+++..+.+. ..+++.++.++|++++.|
T Consensus 301 ~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 379 (550)
T PTZ00401 301 TEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDK 379 (550)
T ss_pred cchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHHhcCCCcccccccchHH
Confidence 9999999999998789999999999999999999876 456666666666544321
Q ss_pred --------CCCCceeeHHHHHHHHHHcC-CCCCCCCCCCcHHHHHHHHHhhcC
Q 014856 374 --------KPKTLRLTFEEGVQMLKDAG-VEIDPLGDLNTESERKLGQLVLEK 417 (417)
Q Consensus 374 --------~~p~~rit~~eAi~~L~~~g-~~~~~~~dl~te~E~~L~~~vkek 417 (417)
..||+||+|.||++||++.| .+++|++||++++|++|+++|+++
T Consensus 380 l~~~~~~~~~~~~rl~y~eai~lL~~~~~~~~~~~~dl~~~~E~~L~~~v~~~ 432 (550)
T PTZ00401 380 YQARVHNMDSRMLRINYMHCIELLNTVLEEKMAPTDDINTTNEKLLGKLVKER 432 (550)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHhcccCCCcccccCchHHHHHHHHHHHh
Confidence 12489999999999999986 567888999999999999999864
No 4
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-72 Score=564.89 Aligned_cols=363 Identities=21% Similarity=0.329 Sum_probs=300.8
Q ss_pred CccCChhHHHHHHHHHHHHHHHHHHHHHHH------HHhhccccccCCCcCCccccchhhhhcc----CCCCCCCccccc
Q 014856 18 SQSISKKAAKKEAAKKAKEERRKEAEAAAS------AASALSIEEEGPLANNYGDVPLQELQSV----NDPQTGKWSEAV 87 (417)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~~~~~~------~~~~~~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~~~~~~~ 87 (417)
..++||+++||+.+..+++..++.+++... .+......+++.++.+|.++|.+.++++ .|||||||++++
T Consensus 5 s~~~sk~~lkrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~ 84 (560)
T KOG1885|consen 5 SEMLSKNELKRRSLAKQKALEKAKKASSKAAAPSVAAAKSVSKSEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSI 84 (560)
T ss_pred hhhhhHHHHHHhHHHhhHHHHHHHhhhhccCCCccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccc
Confidence 468899999999999888776665432111 1112334667889999999999988764 499999999999
Q ss_pred cCcce----eeecccccccCCcEEEEEee------------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEE
Q 014856 88 SGREW----TEVGALNGSLKDQEVLIRGR------------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 145 (417)
Q Consensus 88 ~~~~~----~~i~~l~~~~~G~~V~vrgr------------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V 145 (417)
+...| ..+.. .+...+..|+|+|| +|.+||+|++++....+.++....+.|++||+|
T Consensus 85 si~~fieky~~l~~-ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDii 163 (560)
T KOG1885|consen 85 SIPDFIEKYLHLAT-GEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDII 163 (560)
T ss_pred cHHHHHHHhcCccc-ccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEE
Confidence 98654 33322 12344555666666 778999999987654456677788999999999
Q ss_pred EEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeec-
Q 014856 146 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRT- 223 (417)
Q Consensus 146 ~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~- 223 (417)
+|.|.+++ +.+|+++|.+.+|.+|||| +|||.. ++++.|.|+|+++|||||+.
T Consensus 164 g~~G~pgr------t~~gELSi~~~~~~lLspcLh~lP~~-------------------~~gLkD~EtRyrqRylDlilN 218 (560)
T KOG1885|consen 164 GVSGYPGR------TKSGELSIIPNEIILLSPCLHMLPHE-------------------HFGLKDKETRYRKRYLDLILN 218 (560)
T ss_pred eeecCCCc------CCCceEEEeecchheecchhccCChh-------------------hcCCCcHHHHHHHHHHHHHcC
Confidence 99997654 4467999999999999999 999943 57789999999999999998
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHHHhhcccCCceEE
Q 014856 224 LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFE 301 (417)
Q Consensus 224 ~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~li~~g~~rVfe 301 (417)
+.++..|++|++|+.+||.||+++||+||+||||+..+.+..|.||.+ +-++.++|||++||||+|||++||++||||
T Consensus 219 ~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVYE 298 (560)
T KOG1885|consen 219 PEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYE 298 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHHH
Confidence 789999999999999999999999999999999975442223459998 458999999999999999999999999999
Q ss_pred EeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceee
Q 014856 302 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 381 (417)
Q Consensus 302 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit 381 (417)
||++||||++ +.+||||||.|||||||+| |+|+|+++|+||+.+++.+.+.|.......+...+...++|.+||+||+
T Consensus 299 IGr~FRNEGI-DlTHNPEFTTcEfY~AYad-y~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~ 376 (560)
T KOG1885|consen 299 IGRQFRNEGI-DLTHNPEFTTCEFYMAYAD-YEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIE 376 (560)
T ss_pred HHHHhhhcCc-ccccCCCcchHHHHHHHhh-HHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeee
Confidence 9999999996 8999999999999999997 9999999999999999999998875544333333444589999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCcHHHHHH
Q 014856 382 FEEGVQMLKDAGVEIDPLGDLNTESERKL 410 (417)
Q Consensus 382 ~~eAi~~L~~~g~~~~~~~dl~te~E~~L 410 (417)
|-+.++ ++.|++++++++|++++-+.+
T Consensus 377 mi~~L~--k~lgi~l~~~~~l~~~e~~~~ 403 (560)
T KOG1885|consen 377 MIEELE--KELGIKLPPGSTLHTEETREL 403 (560)
T ss_pred HHHHHH--HHhCCCCCCccccCchhhHHH
Confidence 999998 789999999999999887544
No 5
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-68 Score=543.64 Aligned_cols=292 Identities=35% Similarity=0.544 Sum_probs=263.5
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.++++.....|+.|+|+|| +++.||||+.++. +.+++++ ++.|+.||+|.|+|+|+..+
T Consensus 5 ~~i~di~~~~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~iQ~v~~~~~--~~~~~~~-~~~L~~es~v~V~G~v~~~~ 81 (435)
T COG0017 5 TYIKDIKPHVGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGFIQAVVPKNK--VYEELFK-AKKLTLESSVVVTGIVKASP 81 (435)
T ss_pred eeHHhhhccCCCcEEEEEEEeeeecccCCeEEEEEEcCCcEEEEEEECCC--CcHHHhh-hhcCCCccEEEEEEEEEcCC
Confidence 45566665565699999999 6778999998742 3577788 89999999999999999876
Q ss_pred ccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHh
Q 014856 156 VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 234 (417)
Q Consensus 156 ~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs 234 (417)
. +.|++||++++|.|++.+ .++|++.+.. +++++|++|||||||++..++||++||
T Consensus 82 ~----a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~-------------------~~~e~lld~rhL~lR~~~~~Av~kirs 138 (435)
T COG0017 82 K----APQGFELQVEKIEVLGEADPPYPIDKKEH-------------------SELETLLDNRHLDLRTPKIQAVFKIRS 138 (435)
T ss_pred C----CCCCEEEEEEEEEEeeccCCCCCcCcccc-------------------cCHHHHHhchheeccccchHHHHhHHH
Confidence 3 457899999999999999 7899886542 268999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCc
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 314 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~ 314 (417)
.|+++||+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||+|+++++ |+|||+|||+||||+|+|.
T Consensus 139 ~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~ 217 (435)
T COG0017 139 SILRAIREFFYENGFTEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTR 217 (435)
T ss_pred HHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999998776 9999999999999999999
Q ss_pred ccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCC--CCCCceeeHHHHHHHHHHc
Q 014856 315 RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDA 392 (417)
Q Consensus 315 rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~p~~rit~~eAi~~L~~~ 392 (417)
|||+||||+|+||+|++ ++|+|+++|+||+++++.+.++|..+|+.+++ +...++. ..||+||||.|||++|++.
T Consensus 218 RHL~EF~~ld~Emaf~~-~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~~l~~~~~~pf~ritY~eAieiL~~~ 294 (435)
T COG0017 218 RHLSEFWMLDPEMAFAD-LNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNSELKRPESAPFPRITYKEAIEILEEK 294 (435)
T ss_pred chhhhHheecceeccCc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhcccccCCccEEEHHHHHHHHHhc
Confidence 99999999999999998 99999999999999999999999999998875 2233333 3589999999999999999
Q ss_pred CCC-CCCCCCCCcHHHHHHHHHh
Q 014856 393 GVE-IDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 393 g~~-~~~~~dl~te~E~~L~~~v 414 (417)
|.+ ++|++||++++||+|++..
T Consensus 295 ~~e~~~~GdDl~~e~Er~l~e~~ 317 (435)
T COG0017 295 GFEKVEWGDDLGTEHERYLGEEY 317 (435)
T ss_pred CCcccCCCCccCCHHHHHHHHHh
Confidence 998 9999999999999999643
No 6
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=7.1e-68 Score=558.66 Aligned_cols=346 Identities=23% Similarity=0.340 Sum_probs=279.3
Q ss_pred CCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH---h-----h--ccccccCCCcCCccccchhhhhcc----CCCCCC
Q 014856 16 SSSQSISKKAAKKEAAKKAKEERRKEAEAAASAA---S-----A--LSIEEEGPLANNYGDVPLQELQSV----NDPQTG 81 (417)
Q Consensus 16 ~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~---~-----~--~~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~ 81 (417)
..++++||+++||++|++++++++++++++++++ . + .+++.++.++++|..+|...++.+ .|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~pyp~ 82 (553)
T PLN02502 3 SNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYPY 82 (553)
T ss_pred CCcccccHHHHHHHHhhhhhhHHHhhhHhhcccccccccCccccccccccccccCHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4578999999999999999998887654322110 0 0 111222456678888888776652 489999
Q ss_pred CccccccCcce-eeeccc--ccccCCcEEEEEee-----------------cCceEEEEEeeCCCCcc-HHHHHHHHcCC
Q 014856 82 KWSEAVSGREW-TEVGAL--NGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVS-KEMVRFVRSLS 140 (417)
Q Consensus 82 ~~~~~~~~~~~-~~i~~l--~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~-~~~~~~~~~l~ 140 (417)
+|+++++...+ ..+..+ .....|+.|+|+|| +++.||||+..+....+ +.+..+...|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~ 162 (553)
T PLN02502 83 KFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVD 162 (553)
T ss_pred CCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCccEEEEEECccccchhHHHHHHHhCCC
Confidence 99999887554 223333 23467899999999 66789999986432111 23555666799
Q ss_pred CCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccce
Q 014856 141 NESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVI 219 (417)
Q Consensus 141 ~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~L 219 (417)
.||+|.|+|++.++ .+|++||++++|.|||+| .+||....+ ..+.++|+++|||
T Consensus 163 ~gdiV~V~G~~~~t------~~gelel~~~~i~vLs~~l~plP~k~~~-------------------~~d~e~r~r~RyL 217 (553)
T PLN02502 163 RGDIVGVTGTPGKT------KKGELSIFPTSFEVLTKCLLMLPDKYHG-------------------LTDQETRYRQRYL 217 (553)
T ss_pred CCcEEEEEEEEEec------CCCCEEEEEeEEEEEeccCCCCCccccc-------------------ccchhhhccchhh
Confidence 99999999999764 357899999999999999 899986443 3789999999999
Q ss_pred eee-chhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHHHhhcccC
Q 014856 220 DIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDF 296 (417)
Q Consensus 220 dlR-~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~li~~g~ 296 (417)
||+ ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +||+.++||+||||||+|+|+++|+
T Consensus 218 dl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~ 297 (553)
T PLN02502 218 DLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGF 297 (553)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHHhcc
Confidence 996 6999999999999999999999999999999999987643334558988 7899999999999999999999999
Q ss_pred CceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCC
Q 014856 297 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPK 376 (417)
Q Consensus 297 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p 376 (417)
+|||+||||||||+++ .|||||||||||||+|++ |+|+|+++|+||+++++.+.+.|... +....++|..|
T Consensus 298 ~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d-~~dlm~~~E~li~~i~~~v~~~~~~~-------~~~~~i~~~~p 368 (553)
T PLN02502 298 ERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYAD-YNDMMELTEEMVSGMVKELTGSYKIK-------YHGIEIDFTPP 368 (553)
T ss_pred CCEEEEcCeeeCCCCC-CccccceeehhhhhhcCC-HHHHHHHHHHHHHHHHHHHhcccccc-------cCCccccCCCC
Confidence 9999999999999986 599999999999999995 99999999999999999998776533 23345678889
Q ss_pred CceeeHHHHHHHHHHcCCCCC
Q 014856 377 TLRLTFEEGVQMLKDAGVEID 397 (417)
Q Consensus 377 ~~rit~~eAi~~L~~~g~~~~ 397 (417)
|+|+||.||++ +..|++++
T Consensus 369 ~~rit~~e~l~--~~~g~~~~ 387 (553)
T PLN02502 369 FRRISMISLVE--EATGIDFP 387 (553)
T ss_pred ceeccHHHHHH--HHhCCCCC
Confidence 99999999997 34576654
No 7
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.9e-66 Score=535.14 Aligned_cols=297 Identities=38% Similarity=0.601 Sum_probs=267.9
Q ss_pred eeeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecC
Q 014856 92 WTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 154 (417)
Q Consensus 92 ~~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 154 (417)
.+.+++|....+|+.|+|+|| +++.||||++.+. + +++++++..|+.||+|.|+|+|..+
T Consensus 4 ~~~~~~l~~~~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~iQ~v~~~~~--~-~~~~~~~~~L~~gs~V~v~G~v~~~ 80 (437)
T PRK05159 4 RHLTSELTPELDGEEVTLAGWVHEIRDLGGIAFLILRDRSGIIQVVVKKKV--D-EELFETIKKLKRESVVSVTGTVKAN 80 (437)
T ss_pred eeEhhhCChhhCCCEEEEEEEeEeeecCCCeEEEEEEcCCcEEEEEEeCCc--c-HHHHHHHhCCCCCcEEEEEEEEEcC
Confidence 467888988899999999999 5678999998643 2 6788899999999999999999875
Q ss_pred CccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHH
Q 014856 155 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 233 (417)
Q Consensus 155 ~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~r 233 (417)
+. ..|++||++++|+|||+| .++|+...+.. ..+.++|++|||||||++.++++|++|
T Consensus 81 ~~----~~~~~el~~~~i~vls~a~~~~P~~~~~~~-----------------~~~~~~~~~~r~Ldlr~~~~~~~l~~R 139 (437)
T PRK05159 81 PK----APGGVEVIPEEIEVLNKAEEPLPLDISGKV-----------------LAELDTRLDNRFLDLRRPRVRAIFKIR 139 (437)
T ss_pred CC----CCCCEEEEEeEEEEEeCCCCCCCCCccccc-----------------cCCHHHHhhCcceecCCHHHHHHHHHH
Confidence 42 346899999999999999 79998755421 146899999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCC
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 313 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t 313 (417)
|.|+++||+||.++||+||+||+|+++++|||++.|.++|||.++||+||||||||+++++|++|||+||||||||+++|
T Consensus 140 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t 219 (437)
T PRK05159 140 SEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNT 219 (437)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCC
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 014856 314 HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 393 (417)
Q Consensus 314 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g 393 (417)
+|||||||||||||+|.++|+|+|+++|+||+++++.+.+++..++..++..++ .+..||+||||.||+++|++.|
T Consensus 220 ~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~----~~~~~f~rit~~eA~~~l~~~~ 295 (437)
T PRK05159 220 SRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP----VPETPIPRITYDEAIEILKSKG 295 (437)
T ss_pred cccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCC----cCCCCceEeEHHHHHHHHHHcC
Confidence 999999999999999997799999999999999999999998888876654332 1346999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhc
Q 014856 394 VEIDPLGDLNTESERKLGQLVLE 416 (417)
Q Consensus 394 ~~~~~~~dl~te~E~~L~~~vke 416 (417)
.++++++|+++++|+.|+++|.+
T Consensus 296 ~~~~~~~~~~~~~e~~l~~~~~~ 318 (437)
T PRK05159 296 NEISWGDDLDTEGERLLGEYVKE 318 (437)
T ss_pred CCCCCCCCCCcHHHHHHHHHHhh
Confidence 99999999999999999999965
No 8
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=3.5e-66 Score=534.59 Aligned_cols=294 Identities=37% Similarity=0.586 Sum_probs=263.5
Q ss_pred eecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc
Q 014856 94 EVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 156 (417)
Q Consensus 94 ~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 156 (417)
.+++|+.++.|+.|+|+|| ++++||||+..+. +++++++++..|+.||+|.|+|+|...+
T Consensus 2 ~~~~l~~~~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g~iQ~v~~~~~--~~~~~~~~~~~l~~~s~v~v~G~v~~~~- 78 (428)
T TIGR00458 2 YSADIKPEMDGQEVTFMGWVHEIRDLGGLIFVLLRDREGLIQITAPAKK--VSKNLFKWAKKLNLESVVAVRGIVKIKE- 78 (428)
T ss_pred chhhCchhhCCCEEEEEEEEEEEecCCCcEEEEEEeCCeeEEEEEECCc--CCHHHHHHHhCCCCCcEEEEEEEEEecC-
Confidence 3567777888999999999 6678999998642 5678999999999999999999998643
Q ss_pred cCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhH
Q 014856 157 EIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 235 (417)
Q Consensus 157 ~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~ 235 (417)
..+|++||++++|+|||+| .+||++..+.. ..+.++|++|||||||++.++++|++||.
T Consensus 79 ---~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~ 138 (428)
T TIGR00458 79 ---KAPGGFEIIPTKIEVINEAKEPLPLDPTEKV-----------------PAELDTRLDYRFLDLRRPTVQAIFRIRSG 138 (428)
T ss_pred ---CCCCcEEEEEeEEEEEecCCCCCCCCccccC-----------------CCCHHHHhhhhhhhhCCHHHHHHHHHHHH
Confidence 2357899999999999999 89999876531 25789999999999999999999999999
Q ss_pred HHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcc
Q 014856 236 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 315 (417)
Q Consensus 236 i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~r 315 (417)
|++++|+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++|++|||+||||||||+++|+|
T Consensus 139 i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~r 218 (428)
T TIGR00458 139 VLESVREFLAEEGFIEVHTPKLVASATEGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHR 218 (428)
T ss_pred HHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCC
Q 014856 316 HLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVE 395 (417)
Q Consensus 316 Hl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~~ 395 (417)
||||||||||||+|.+ |+|+|+++|+||++++..+.++|..+++.++..++. ...||+||||.||+++|++.|++
T Consensus 219 Hl~EFt~lE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~----~~~pf~rity~eA~~~l~~~g~~ 293 (428)
T TIGR00458 219 HLNEATSIDIEMAFED-HHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEK----PEGKFVRLTYDEAIEMANAKGVE 293 (428)
T ss_pred chheeeEeeeeeccCC-HHHHHHHHHHHHHHHHHHHHhcchhhhhhccccccc----CCCCceEEEHHHHHHHHHHcCCC
Confidence 9999999999999996 999999999999999999999988877654322211 13589999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHhh
Q 014856 396 IDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 396 ~~~~~dl~te~E~~L~~~vk 415 (417)
++|++||++++|++|++.+.
T Consensus 294 ~~~~~~l~~~~E~~l~~~~~ 313 (428)
T TIGR00458 294 IGWGEDLSTEAEKALGEEMD 313 (428)
T ss_pred CCCccccchHHHHHHHHHhC
Confidence 99999999999999998653
No 9
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=3.8e-63 Score=522.97 Aligned_cols=285 Identities=26% Similarity=0.384 Sum_probs=246.8
Q ss_pred cccCCcEEEEEee------------------cC---ceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccC
Q 014856 100 GSLKDQEVLIRGR------------------RV---STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 158 (417)
Q Consensus 100 ~~~~G~~V~vrgr------------------~~---~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 158 (417)
.++.|+.|+|+|| ++ +.||||+..+. . .....|+.||+|.|+|+|+.++. .
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~----~---~~~~~L~~ES~V~V~G~V~~~~~-~ 117 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSL----Y---DLSTLVATGTCVTVDGVLKVPPE-G 117 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCch----h---hHHhcCCCceEEEEEEEEEeCCc-c
Confidence 5688999999999 22 57999997431 1 12236999999999999987654 3
Q ss_pred CCCceeEEEEEeEEEEeecC-C-CCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHH
Q 014856 159 KGATQQVEVQIKKLYCVSRA-A-KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 236 (417)
Q Consensus 159 ~~~t~~~El~~~~i~vls~~-~-~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i 236 (417)
++++|++||++++|.|||+| . ++|++... .+.++++++|||++|++.+++|||+||.|
T Consensus 118 ~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~--------------------~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i 177 (572)
T PLN02221 118 KGTKQKIELSVEKVIDVGTVDPTKYPLPKTK--------------------LTLEFLRDVLHLRSRTNSISAVARIRNAL 177 (572)
T ss_pred CCCCccEEEEEeEEEEEecCCCCCCCCCCCc--------------------CChHHHhhcchhhcCCHHHHHHHHHHHHH
Confidence 45678999999999999999 3 78876331 46788899999999999999999999999
Q ss_pred HHHHHHHhhhCCcEeecCceeeecCCCCCcceeee---------------------------------------------
Q 014856 237 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------------------------------------------- 271 (417)
Q Consensus 237 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------------------------------------------- 271 (417)
+++||+||.++||+||+||+|++++||||++.|.|
T Consensus 178 ~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (572)
T PLN02221 178 AFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAA 257 (572)
T ss_pred HHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhcc
Confidence 99999999999999999999999999999999876
Q ss_pred ---------------------------------------------ccCCCceeeccCHHHHHHHhhcccCCceEEEeecc
Q 014856 272 ---------------------------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 306 (417)
Q Consensus 272 ---------------------------------------------~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~F 306 (417)
+|||+++||+|||||||||++ +||+|||+|||+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~F 336 (572)
T PLN02221 258 KASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTF 336 (572)
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEccce
Confidence 799999999999999999965 5799999999999
Q ss_pred ccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCc---cc--CCCCCCceee
Q 014856 307 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFE---PL--KYKPKTLRLT 381 (417)
Q Consensus 307 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~---~~--~~~~p~~rit 381 (417)
|||+++|+||||||||||+||+|.+ |+|+|+++|+||+++++.+.++|..+++.+...++.. .+ .+..||+|||
T Consensus 337 RAE~s~T~RHL~EFtmlE~Emaf~d-~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIt 415 (572)
T PLN02221 337 RAENSHTSRHLAEFWMVEPEIAFAD-LEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRIT 415 (572)
T ss_pred ecCCCCCCcccccccceeeeeecCC-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEE
Confidence 9999999999999999999999996 9999999999999999999999999988776544321 11 1346999999
Q ss_pred HHHHHHHHHHc---CC----CCCCCCCCCcHHHHHHHHHh
Q 014856 382 FEEGVQMLKDA---GV----EIDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 382 ~~eAi~~L~~~---g~----~~~~~~dl~te~E~~L~~~v 414 (417)
|.||+++|++. |. +++|++||++++|++|++++
T Consensus 416 y~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~ 455 (572)
T PLN02221 416 YTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVL 455 (572)
T ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHh
Confidence 99999999884 54 34688999999999999985
No 10
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=4.1e-63 Score=519.13 Aligned_cols=285 Identities=24% Similarity=0.365 Sum_probs=239.7
Q ss_pred CCCCCCCccccccCcce-eeeccccc---ccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHH
Q 014856 76 NDPQTGKWSEAVSGREW-TEVGALNG---SLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVR 134 (417)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~~---~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~ 134 (417)
.+||||+|..+++...+ ..+.+++. ...|+.|+|+|| ++++||+|++.+. +++++++
T Consensus 21 ~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g~iQ~~~~~~~--~~~~~~~ 98 (496)
T TIGR00499 21 NNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESGQIQLYVNKDD--LPEDFYE 98 (496)
T ss_pred CCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCccEEEEEECCc--CcHHHHH
Confidence 48999999998777443 22233221 244889999999 5678999998642 4566777
Q ss_pred HHHc-CCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhh
Q 014856 135 FVRS-LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 212 (417)
Q Consensus 135 ~~~~-l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 212 (417)
+... |+.||+|.|+|++..+ .+|++||++++|.+||+| .+||..+.+ ..+.++
T Consensus 99 ~~~~~l~~gd~V~v~G~~~~t------~~gelel~~~~i~ilsk~~~plP~k~~~-------------------~~d~e~ 153 (496)
T TIGR00499 99 FDEYLLDLGDIIGVTGYPFKT------KTGELSVHVTELQILTKALRPLPDKFHG-------------------LTDQET 153 (496)
T ss_pred HHHhcCCCCCEEEEEEEEEEC------CCCcEEEEeeEEEEEecCCCCCCccccc-------------------cCChhh
Confidence 7664 8999999999999753 357899999999999999 899987543 268899
Q ss_pred hccccceeeec-hhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeecc--CCCceeeccCHHHHHH
Q 014856 213 RLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHKQ 289 (417)
Q Consensus 213 Rl~~R~LdlR~-~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~Spql~lq 289 (417)
||++||||||+ +.++++|++||.|+++||+||.++||+||+||+|++..+++++.+|.+.| |+.++||+||||||||
T Consensus 154 r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELylK 233 (496)
T TIGR00499 154 RYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYLK 233 (496)
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHHHH
Confidence 99999999996 89999999999999999999999999999999998764333346899855 9999999999999999
Q ss_pred HhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCc
Q 014856 290 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFE 369 (417)
Q Consensus 290 ~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 369 (417)
++++|||+||||||||||||+++ .|||||||||||||+|++ |+|||+++|+||++++..+.+.+... ++..
T Consensus 234 rlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d-~~dlm~~~E~li~~i~~~l~~~~~~~-------~~~~ 304 (496)
T TIGR00499 234 RLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYAD-YEDLMDLTENLFKFLAQELLGTTKIT-------YGEL 304 (496)
T ss_pred HHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCC-HHHHHHHHHHHHHHHHHHHhccccee-------cCce
Confidence 99999999999999999999984 699999999999999995 99999999999999999998766542 2333
Q ss_pred ccCCCCCCceeeHHHHHHHHHH-cCCCC
Q 014856 370 PLKYKPKTLRLTFEEGVQMLKD-AGVEI 396 (417)
Q Consensus 370 ~~~~~~p~~rit~~eAi~~L~~-~g~~~ 396 (417)
.+++..||+||||.||+++|.+ .|+++
T Consensus 305 ~~~~~~pf~rit~~eai~~~~~~~g~~~ 332 (496)
T TIGR00499 305 EIDFKKPFKRITMVEAIKKYDMETGIDF 332 (496)
T ss_pred eccCCCCceEEEHHHHHHHHHHhcCCCc
Confidence 4567789999999999998854 67765
No 11
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=5e-62 Score=506.56 Aligned_cols=291 Identities=26% Similarity=0.386 Sum_probs=256.0
Q ss_pred eccc-ccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc
Q 014856 95 VGAL-NGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 156 (417)
Q Consensus 95 i~~l-~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 156 (417)
++++ .....|+.|+|+|| +++.+|+++..+. +.+++++++.|+.||+|.|+|++..++
T Consensus 6 ~~~~~~~~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~iq~~~~~~~---~~~~~~~~~~l~~~s~v~v~G~v~~~~- 81 (450)
T PRK03932 6 IKDILKGKYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDN---GEEYFEEIKKLTTGSSVIVTGTVVESP- 81 (450)
T ss_pred HHHhcccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCcEEEEEEcCC---ChHHHHHHhcCCCCcEEEEEEEEEcCC-
Confidence 4454 45788999999999 5678999987643 467788899999999999999998754
Q ss_pred cCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhH
Q 014856 157 EIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 235 (417)
Q Consensus 157 ~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~ 235 (417)
+.+|++||++++|.||++| .++|+..++ .+.++|++|||||||++.++++|++||.
T Consensus 82 ---~~~~~~el~~~~i~vl~~~~~~~p~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~l~~Rs~ 138 (450)
T PRK03932 82 ---RAGQGYELQATKIEVIGEDPEDYPIQKKR--------------------HSIEFLREIAHLRPRTNKFGAVMRIRNT 138 (450)
T ss_pred ---CCCCCEEEEEEEEEEccCCCCCCCCCccc--------------------cChHHHhhCceeeccCHHHHHHHHHHHH
Confidence 2347899999999999999 889986543 3468899999999999999999999999
Q ss_pred HHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee---------ccCCCceeeccCHHHHHHHhhcccCCceEEEeecc
Q 014856 236 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 306 (417)
Q Consensus 236 i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v---------~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~F 306 (417)
|++++|+||.++||+||+||+|+++++||++++|.| +|||.++||+||||||||++ ++|++|||+|||||
T Consensus 139 i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~F 217 (450)
T PRK03932 139 LAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTF 217 (450)
T ss_pred HHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeecc
Confidence 999999999999999999999999999999999999 89999999999999999986 58999999999999
Q ss_pred ccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccC-----CCCCCceee
Q 014856 307 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLK-----YKPKTLRLT 381 (417)
Q Consensus 307 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~p~~rit 381 (417)
|||+++|+|||||||||||||+|.+ ++|+|+++|+||+++++.+.+.+..+|+.++...+...++ ...||+|||
T Consensus 218 R~E~~~t~rHl~EFt~lE~e~~~~~-~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rit 296 (450)
T PRK03932 218 RAENSNTRRHLAEFWMIEPEMAFAD-LEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRIT 296 (450)
T ss_pred ccCCCCCccccccccccceEEeccC-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeE
Confidence 9999999999999999999999996 9999999999999999999999998888777654433221 336999999
Q ss_pred HHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHH-Hh
Q 014856 382 FEEGVQMLKDAGVE----IDPLGDLNTESERKLGQ-LV 414 (417)
Q Consensus 382 ~~eAi~~L~~~g~~----~~~~~dl~te~E~~L~~-~v 414 (417)
|.||+++|++.|.+ +.|+.||++++|++|++ .+
T Consensus 297 y~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 334 (450)
T PRK03932 297 YTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHF 334 (450)
T ss_pred HHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhc
Confidence 99999999998764 36789999999999998 54
No 12
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=1.9e-61 Score=511.90 Aligned_cols=268 Identities=19% Similarity=0.304 Sum_probs=231.6
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC--CCCCcccccccchHH
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA--AKTPITIEDASRSEA 193 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~--~~lP~~~~~~~~~~~ 193 (417)
.||||+.... .. ....|+.|++|.|+|+|+..+. ...+|.+||.+++|.||+++ .++|++.+.
T Consensus 148 ~lQvVv~~~~--~~-----~~~~L~~Es~V~V~G~V~~~~~--~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~------ 212 (633)
T PLN02532 148 SLQVVVDSAL--AP-----LTQLMATGTCILAEGVLKLPLP--AQGKHVIELEVEKILHIGTVDPEKYPLSKKR------ 212 (633)
T ss_pred ceEEEEeCCc--cc-----HhhcCCCceEEEEEEEEEecCC--CCCCCcEEEEeeEEEEEecCCCCCCcccccc------
Confidence 3999997532 11 1268999999999999987532 23467899999999999998 467765332
Q ss_pred HHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcce-----
Q 014856 194 EIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV----- 268 (417)
Q Consensus 194 ~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~----- 268 (417)
.+.|++++|||||||++.++++||+||.|+++||+||.++||+||+||+|++++||||++.
T Consensus 213 --------------~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t 278 (633)
T PLN02532 213 --------------LPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTT 278 (633)
T ss_pred --------------CCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceec
Confidence 3567888999999999999999999999999999999999999999999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q 014856 269 -------------------------------------------------------------------------------- 268 (417)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (417)
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
T PLN02532 279 LLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKA 358 (633)
T ss_pred cccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ----eeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHH
Q 014856 269 ----FRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 269 ----F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
|.++|||+++||+||||||||+++ +||+|||+|||+||||+++|.|||+||||||+||+|.+ |+|+|+++|+||
T Consensus 359 ~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d-~~dvM~l~E~lI 436 (633)
T PLN02532 359 DKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSE-LEDAMNCAEDYF 436 (633)
T ss_pred cccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCcccccccceeeeehhcC-HHHHHHHHHHHH
Confidence 566799999999999999999876 58999999999999999999999999999999999996 999999999999
Q ss_pred HHHhHHhhhhhHHHHHHhhhcCCCcc-----cCCCCCCceeeHHHHHHHHHHcC-----CCCCCCCCCCcHHHHHHHHHh
Q 014856 345 VTIFDSLNNVCKKELEAVAKQYPFEP-----LKYKPKTLRLTFEEGVQMLKDAG-----VEIDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 345 ~~i~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~p~~rit~~eAi~~L~~~g-----~~~~~~~dl~te~E~~L~~~v 414 (417)
+++++.+.++|..+|+.++..+.... ..+..||+||||.||+++|++.+ ..++|++||++++|++|++.+
T Consensus 437 ~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~~~g~dL~~e~Er~L~~~~ 516 (633)
T PLN02532 437 KFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTTEHLSYLADEI 516 (633)
T ss_pred HHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcccccccCCccChHHHHHHHHHH
Confidence 99999999999999987765433211 13456999999999999998864 236799999999999999974
No 13
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=1.1e-60 Score=496.47 Aligned_cols=285 Identities=26% Similarity=0.404 Sum_probs=249.8
Q ss_pred ccCCcEEEEEee-----------------cC--ceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCC
Q 014856 101 SLKDQEVLIRGR-----------------RV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 161 (417)
Q Consensus 101 ~~~G~~V~vrgr-----------------~~--~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~ 161 (417)
...|++|+|+|| ++ +.||||++.+ .+.++++++..|+.||+|.|+|+|..++ +.
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~---~~~~~~~~~~~l~~gs~V~v~G~v~~~~----~~ 85 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGE---DNPYLFQLLKSLTTGSSVSVTGKVVESP----GK 85 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCC---cChHHHHHHHcCCCCcEEEEEEEEEcCC----CC
Confidence 567999999999 34 6899999864 2457788899999999999999998743 34
Q ss_pred ceeEEEEEeEEEEeecCC--CCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHHHHH
Q 014856 162 TQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNI 239 (417)
Q Consensus 162 t~~~El~~~~i~vls~~~--~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~~ 239 (417)
++++||.+++|.||++|. ++|++..+ .+.++|+++||||+|++..+++|++||.|+++
T Consensus 86 ~~~~El~~~~i~vl~~~~~~~~P~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~ 145 (453)
T TIGR00457 86 GQPVELQVKKIEVVGEAEPDDYPLQKKE--------------------HSLEFLRDIAHLRLRTNTLGAVMRVRNALSQA 145 (453)
T ss_pred CCCEEEEEeEEEEEecCCccCCCCCccc--------------------cChhhHhhCcceecCCHHHHHHHHHHHHHHHH
Confidence 578999999999999993 78887543 35678999999999999999999999999999
Q ss_pred HHHHhhhCCcEeecCceeeecCCCCCcceeeec---------cCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCC
Q 014856 240 FRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---------YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 310 (417)
Q Consensus 240 iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---------~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~ 310 (417)
+|+||.++||+||+||+|+++++|||+++|.+. |||.++||+||||||||++ ++|++|||+||||||||+
T Consensus 146 ~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~ 224 (453)
T TIGR00457 146 IHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEK 224 (453)
T ss_pred HHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCC
Confidence 999999999999999999999999999999987 9999999999999999976 589999999999999999
Q ss_pred CCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccC-----CCCCCceeeHHHH
Q 014856 311 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLK-----YKPKTLRLTFEEG 385 (417)
Q Consensus 311 s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~p~~rit~~eA 385 (417)
++|+|||||||||||||+|++ |+|+|+++|+||+++++.+.+.|..+++.++..++...+. ...||+||||.||
T Consensus 225 ~~t~rHl~EFt~le~e~~~~~-~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea 303 (453)
T TIGR00457 225 SNTSRHLSEFWMIEPEMAFAN-LNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDA 303 (453)
T ss_pred CCCCcCcchhccceeeeecCC-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHH
Confidence 988999999999999999996 9999999999999999999999988887765443322111 1248999999999
Q ss_pred HHHHHHcCC----CCCCCCCCCcHHHHHHHHHh
Q 014856 386 VQMLKDAGV----EIDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 386 i~~L~~~g~----~~~~~~dl~te~E~~L~~~v 414 (417)
+++|++.|. +..|++||++++|++|++.+
T Consensus 304 ~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~ 336 (453)
T TIGR00457 304 IEILKESDKNFEYEDFWGDDLQTEHERFLAEEY 336 (453)
T ss_pred HHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHh
Confidence 999999864 34578899999999999875
No 14
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-61 Score=502.36 Aligned_cols=277 Identities=20% Similarity=0.323 Sum_probs=231.8
Q ss_pred CCCCCCCccccccCcce-eeeccccc---ccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHH-
Q 014856 76 NDPQTGKWSEAVSGREW-TEVGALNG---SLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMV- 133 (417)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~~---~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~- 133 (417)
+.||||+|.++++...+ ..+.+++. ...|+.|+|+|| ++++||||+.++. ++++.+
T Consensus 33 g~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g~iQ~~~~~~~--~~~~~~~ 110 (505)
T PRK12445 33 GVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDS--LPEGVYN 110 (505)
T ss_pred CCCCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCccEEEEEECCc--cchhhHH
Confidence 34999999998887543 12222221 244888999999 6678999998542 233333
Q ss_pred HHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhh
Q 014856 134 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 212 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 212 (417)
.....|+.||+|.|+|++.++ .+|++||++++|++||+| .+||..+.+ ..+.++
T Consensus 111 ~~~~~l~~Gd~V~v~G~~~~t------~~gelel~~~~~~llsk~~~plP~~~~~-------------------~~d~e~ 165 (505)
T PRK12445 111 DQFKKWDLGDIIGARGTLFKT------QTGELSIHCTELRLLTKALRPLPDKFHG-------------------LQDQEV 165 (505)
T ss_pred HHHhcCCCCCEEEEEEEEEec------CCCcEEEEEeEEEEEecCCCCCCccccc-------------------ccChhh
Confidence 345789999999999999864 357899999999999999 999987554 267899
Q ss_pred hccccceeeec-hhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCc--ceeee--ccCCCceeeccCHHHH
Q 014856 213 RLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRL--DYKGQSACLAQSPQLH 287 (417)
Q Consensus 213 Rl~~R~LdlR~-~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga--~~F~v--~~~~~~~~L~~Spql~ 287 (417)
|+|+||||||+ +..+++|++||.|+++||+||.++||+||+||+|++. +||| .+|.+ +||+.++||+||||||
T Consensus 166 r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~--~gGa~a~pF~t~~~~~~~~~yL~~SpELy 243 (505)
T PRK12445 166 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVI--PGGASARPFITHHNALDLDMYLRIAPELY 243 (505)
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec--CCCCcccceecccccCCcceeeecCHHHH
Confidence 99999999996 9999999999999999999999999999999999864 4554 48975 7899999999999999
Q ss_pred HHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCC
Q 014856 288 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYP 367 (417)
Q Consensus 288 lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~ 367 (417)
||+|++||++||||||||||||++ |.|||||||||||||+|.| |+|+|+++|+||++++..+.+.+... +.
T Consensus 244 lKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~~l~~~~~~~~~~~-------~~ 314 (505)
T PRK12445 244 LKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEVLGTTKVT-------YG 314 (505)
T ss_pred HHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCC-HHHHHHHHHHHHHHHHHHHhccccee-------cC
Confidence 999999999999999999999998 9999999999999999995 99999999999999999887654321 23
Q ss_pred CcccCCCCCCceeeHHHHHHHHH
Q 014856 368 FEPLKYKPKTLRLTFEEGVQMLK 390 (417)
Q Consensus 368 ~~~~~~~~p~~rit~~eAi~~L~ 390 (417)
...+++..||+||||.||++.+.
T Consensus 315 ~~~i~~~~pf~rit~~eai~~~~ 337 (505)
T PRK12445 315 EHVFDFGKPFEKLTMREAIKKYR 337 (505)
T ss_pred ceeccCCCCceEEEHHHHHHHHh
Confidence 33467778999999999999764
No 15
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-60 Score=498.67 Aligned_cols=283 Identities=23% Similarity=0.353 Sum_probs=233.4
Q ss_pred CCCCCCCccccccCcce-eeeccccc---ccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHH
Q 014856 76 NDPQTGKWSEAVSGREW-TEVGALNG---SLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVR 134 (417)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~~---~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~ 134 (417)
.|||||+|.++++...+ .....+.. ...++.|+|+|| ++++||||+..+. .++++++
T Consensus 22 ~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g~iQ~v~~~~~--~~~~~~~ 99 (491)
T PRK00484 22 IDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSGRIQLYVSKDD--VGEEALE 99 (491)
T ss_pred CCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCccEEEEEECCc--CCHHHHH
Confidence 48999999998766433 11111111 122478999999 5678999998642 4566777
Q ss_pred HHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhh
Q 014856 135 FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTR 213 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etR 213 (417)
.+..|+.||+|.|+|+|..+ .+|++||++++|.|||+| .+||+.+.+ ..+.++|
T Consensus 100 ~~~~l~~g~~v~v~G~v~~t------~~ge~el~~~~~~vls~~~~plP~~~~~-------------------~~~~~~r 154 (491)
T PRK00484 100 AFKKLDLGDIIGVEGTLFKT------KTGELSVKATELTLLTKSLRPLPDKFHG-------------------LTDVETR 154 (491)
T ss_pred HHhcCCCCCEEEEEEEEEEc------CCCcEEEEEeEEEEEeccCCCCCccccc-------------------ccchhhh
Confidence 77889999999999999864 357899999999999999 899986543 2578999
Q ss_pred ccccceeee-chhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHHH
Q 014856 214 LNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQM 290 (417)
Q Consensus 214 l~~R~LdlR-~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~ 290 (417)
+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +||+.++||+||||||||+
T Consensus 155 ~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~ 234 (491)
T PRK00484 155 YRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLKR 234 (491)
T ss_pred ccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHHHH
Confidence 999999998 5999999999999999999999999999999999986543334579975 7899999999999999999
Q ss_pred hhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcc
Q 014856 291 SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEP 370 (417)
Q Consensus 291 li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~ 370 (417)
++++|++|||+||||||||+++ .|||||||||||||+|.+ |+|+|+++|+||+++++.+.+++. +. +....
T Consensus 235 l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d-~~d~m~~~E~li~~i~~~~~~~~~--i~-----~~~~~ 305 (491)
T PRK00484 235 LIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYAD-YNDMMDLTEELIRHLAQAVLGTTK--VT-----YQGTE 305 (491)
T ss_pred HHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhCCce--Ee-----cCCEe
Confidence 9999999999999999999985 599999999999999995 999999999999999999876422 21 22223
Q ss_pred cCCCCCCceeeHHHHHHHHHHcCCCC
Q 014856 371 LKYKPKTLRLTFEEGVQMLKDAGVEI 396 (417)
Q Consensus 371 ~~~~~p~~rit~~eAi~~L~~~g~~~ 396 (417)
+++..||+||||.||++.+ .|+++
T Consensus 306 ~~~~~pf~rity~eai~~~--~g~~~ 329 (491)
T PRK00484 306 IDFGPPFKRLTMVDAIKEY--TGVDF 329 (491)
T ss_pred ecCCCCceEEEHHHHHHHH--hCCCc
Confidence 5667799999999999864 45543
No 16
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=1.4e-60 Score=505.17 Aligned_cols=307 Identities=18% Similarity=0.260 Sum_probs=244.3
Q ss_pred cccccCCCcCCccccchhhhhcc----CCCCCCCccccccCcce-eeecccc--cccCCcEEEEEee-------------
Q 014856 53 SIEEEGPLANNYGDVPLQELQSV----NDPQTGKWSEAVSGREW-TEVGALN--GSLKDQEVLIRGR------------- 112 (417)
Q Consensus 53 ~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~~~~~~~~~~~~-~~i~~l~--~~~~G~~V~vrgr------------- 112 (417)
...++|.+++.|...|...++.. .|||||+|.++++...+ ..+.++. ....+..|+|+||
T Consensus 74 ~~~~~~~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F 153 (585)
T PTZ00417 74 KEEEAEVDPRLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRF 153 (585)
T ss_pred ccccccCChHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEE
Confidence 34567889999999988766553 49999999998877543 2233322 1134556888888
Q ss_pred -----cCceEEEEEeeCCCCccHHHH-HHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCccc
Q 014856 113 -----RVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITI 185 (417)
Q Consensus 113 -----~~~~iQ~v~~~~~~~~~~~~~-~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~ 185 (417)
++++|||+++.+......+.+ .+...|+.||+|.|+|.+.. +.+|++||.+++|.+||+| .+||+.+
T Consensus 154 ~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~------t~~gel~i~~~~i~llsk~l~~lP~~~ 227 (585)
T PTZ00417 154 FDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGK------SKKGELSIFPKETIILSPCLHMLPMKY 227 (585)
T ss_pred EEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcC------CCCceEEEEEEEEEEEecCCCCCCccc
Confidence 566899999864321223333 34578999999999999754 3468999999999999999 8999753
Q ss_pred ccccchHHHHHhhhhcCCCCCCCChhhhccccceeee-chhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCC
Q 014856 186 EDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 264 (417)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR-~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~eg 264 (417)
+..+.++|+++|||||| ++.++++|++||.|+++||+||+++||+||+||+|++...+.
T Consensus 228 --------------------g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA 287 (585)
T PTZ00417 228 --------------------GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGA 287 (585)
T ss_pred --------------------CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcc
Confidence 23578999999999999 589999999999999999999999999999999999763222
Q ss_pred Ccceeee--ccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHH
Q 014856 265 GSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDC 342 (417)
Q Consensus 265 ga~~F~v--~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~ 342 (417)
++.||.+ ++++.++||++|||||+|+|++||++||||||||||||++ +.||||||||||||++|+| |+|+|+++|+
T Consensus 288 ~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~-~~rHnpEFTmlE~y~ay~d-y~dlM~l~E~ 365 (585)
T PTZ00417 288 NARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYAD-FYDLIKWSED 365 (585)
T ss_pred cceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC-CCCccceeeeeeeeeecCC-HHHHHHHHHH
Confidence 3448987 6899999999999999999999999999999999999998 4699999999999999996 9999999999
Q ss_pred HHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHH
Q 014856 343 LFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 387 (417)
Q Consensus 343 li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~ 387 (417)
||++++..+.+.+...+...+.......+++..||+|+||.||++
T Consensus 366 Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~ 410 (585)
T PTZ00417 366 FFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELE 410 (585)
T ss_pred HHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHH
Confidence 999999988765433222111111112456778999999888876
No 17
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=7.9e-60 Score=497.69 Aligned_cols=283 Identities=23% Similarity=0.351 Sum_probs=243.3
Q ss_pred ccCCcEEEEEee----------------c-C--ceEEEEEeeCCCCccHHHHHHHH--cCCCCcEEEEEEEEecCCccCC
Q 014856 101 SLKDQEVLIRGR----------------R-V--STVQCLATVKPDSVSKEMVRFVR--SLSNESIVDVIGVVSVPDVEIK 159 (417)
Q Consensus 101 ~~~G~~V~vrgr----------------~-~--~~iQ~v~~~~~~~~~~~~~~~~~--~l~~es~V~V~G~v~~~~~~~~ 159 (417)
...|++|+|+|| + + ..||||+..+. ..++.+. .|+.||+|.|+|+|+.++
T Consensus 104 ~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~-----~~~~~l~~~~l~~gs~V~V~G~v~~~~---- 174 (565)
T PLN02603 104 ARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDA-----EGYDQVESGLITTGASVLVQGTVVSSQ---- 174 (565)
T ss_pred ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcH-----HHHHHHhhcCCCCCCEEEEEEEEEecC----
Confidence 677999999999 2 2 36999997531 1223333 499999999999998754
Q ss_pred CCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHHHH
Q 014856 160 GATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGN 238 (417)
Q Consensus 160 ~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~ 238 (417)
++.+.+||++++|.+|++| .++|++.++ .+.+.+..+||||+|++.++++||+||.|++
T Consensus 175 ~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~--------------------~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~ 234 (565)
T PLN02603 175 GGKQKVELKVSKIVVVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAY 234 (565)
T ss_pred CCCccEEEEEeEEEEEECCCCCCCCcccc--------------------cchhhhhhhhhhhhccHHHHHHHHHHHHHHH
Confidence 3446799999999999999 789987543 2446677899999999999999999999999
Q ss_pred HHHHHhhhCCcEeecCceeeecCCCCCcceeee------------------------------ccCCCceeeccCHHHHH
Q 014856 239 IFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------DYKGQSACLAQSPQLHK 288 (417)
Q Consensus 239 ~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------~~~~~~~~L~~Spql~l 288 (417)
++|+||.++||+||+||+|++++||||++.|.| +|||+++||+||||||+
T Consensus 235 air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~ 314 (565)
T PLN02603 235 ATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNG 314 (565)
T ss_pred HHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHH
Confidence 999999999999999999999999999998854 68999999999999999
Q ss_pred HHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCC
Q 014856 289 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPF 368 (417)
Q Consensus 289 q~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 368 (417)
|++ ++||+|||+||||||||+|+|+|||+||||||+||+|++ ++|+|+++|++|+++++.+.++|..+|+.++..++.
T Consensus 315 E~~-~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~d-l~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~ 392 (565)
T PLN02603 315 ETY-ATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEK 392 (565)
T ss_pred HHH-HhcccceEEEecceeCCCCCCccccccceeeeeeeecCC-HHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccc
Confidence 985 578999999999999999999999999999999999996 999999999999999999999999998877654332
Q ss_pred cccC-----CCCCCceeeHHHHHHHHHHcC----CCCCCCCCCCcHHHHHHHHHh
Q 014856 369 EPLK-----YKPKTLRLTFEEGVQMLKDAG----VEIDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 369 ~~~~-----~~~p~~rit~~eAi~~L~~~g----~~~~~~~dl~te~E~~L~~~v 414 (417)
..++ ...||+||||.||+++|++.+ ..++|++||++++|++|++.+
T Consensus 393 ~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~ 447 (565)
T PLN02603 393 GIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEA 447 (565)
T ss_pred cHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHh
Confidence 2111 235899999999999998864 356889999999999999876
No 18
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=1.3e-58 Score=488.08 Aligned_cols=287 Identities=22% Similarity=0.308 Sum_probs=241.3
Q ss_pred ccCCcEEEEEee------------------cCc---eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCcc--
Q 014856 101 SLKDQEVLIRGR------------------RVS---TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-- 157 (417)
Q Consensus 101 ~~~G~~V~vrgr------------------~~~---~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-- 157 (417)
...|+.|+|+|| ++. .||||+... ...+.-+.+|+.||+|.|+|+|...+..
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~-----~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~ 152 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQS-----IENYEKLLKCGVGCCFRFTGKLIISPVQNE 152 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCc-----hHHHHHHhcCCCccEEEEEEEEEcCCcccc
Confidence 467999999999 222 499998642 1233456789999999999999864322
Q ss_pred -CCC-CceeEEEEE-----eEEEEeecC-C--CCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhH
Q 014856 158 -IKG-ATQQVEVQI-----KKLYCVSRA-A--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQ 227 (417)
Q Consensus 158 -~~~-~t~~~El~~-----~~i~vls~~-~--~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~ 227 (417)
..| .++.+||.+ .++.||+.+ . ++|++.+. .+.|+++++||||+|++..+
T Consensus 153 n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~--------------------~~~e~lr~~rhL~lR~~~~~ 212 (586)
T PTZ00425 153 NKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKN--------------------HGKEFLREVAHLRPRSYFIS 212 (586)
T ss_pred CcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCcc--------------------CChhhhhhccceeccCHHHH
Confidence 122 246799998 799999988 4 56665321 45788999999999999999
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee------------------------------------
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------------ 271 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------------ 271 (417)
++||+||.|..++|+||.++||+||+||+|++++||||++.|.|
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 292 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNAN 292 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999987
Q ss_pred ---------------------------ccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcccccccccce
Q 014856 272 ---------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 324 (417)
Q Consensus 272 ---------------------------~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE 324 (417)
+|||+++||+||||||||++ ++||+|||+||||||||+++|+|||+||||||
T Consensus 293 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 293 NNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred ccccccccccccccccccccccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 58999999999999999976 57899999999999999999999999999999
Q ss_pred eeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcc---c--CCCCCCceeeHHHHHHHHHHcC----CC
Q 014856 325 VEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEP---L--KYKPKTLRLTFEEGVQMLKDAG----VE 395 (417)
Q Consensus 325 ~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~---~--~~~~p~~rit~~eAi~~L~~~g----~~ 395 (417)
+||+|.+ ++|+|+++|+||+++++.+.++|..+|..++....... + .+..||+||||.||+++|++.| .+
T Consensus 372 ~E~af~d-~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~ 450 (586)
T PTZ00425 372 PEIAFAD-LYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVP 450 (586)
T ss_pred EEEecCC-HHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCC
Confidence 9999996 99999999999999999999888888766543221111 1 1235899999999999998864 46
Q ss_pred CCCCCCCCcHHHHHHHHHh
Q 014856 396 IDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 396 ~~~~~dl~te~E~~L~~~v 414 (417)
++|++||++++|++|++++
T Consensus 451 ~~~G~dL~~e~Er~L~~~~ 469 (586)
T PTZ00425 451 VKWGMDLQSEHERFVAEQI 469 (586)
T ss_pred CCcccccchHHHHHHHHHh
Confidence 7899999999999999985
No 19
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.8e-58 Score=485.73 Aligned_cols=307 Identities=20% Similarity=0.263 Sum_probs=239.7
Q ss_pred CCCCccccccCcce-eeecccc--cccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHH-H
Q 014856 79 QTGKWSEAVSGREW-TEVGALN--GSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFV-R 137 (417)
Q Consensus 79 ~p~~~~~~~~~~~~-~~i~~l~--~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~-~ 137 (417)
.-|+|.++++...+ ..+.++. ....++.|+|+|| .+++|||++.++.. .+++++++. .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G~IQvv~~~~~~-~~~~~~~~~~~ 157 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGNELQVVGQVGEH-FTREDLKKLKV 157 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCceEEEEEECCcc-CCHHHHHHHHh
Confidence 34677777665432 2233331 1233567999999 67899999986431 255566655 5
Q ss_pred cCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC--CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhcc
Q 014856 138 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA--AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLN 215 (417)
Q Consensus 138 ~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~--~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~ 215 (417)
.|+.||+|.|+|+|... .+|++||++++|.+||++ ..+|..... ....+..+.++|||
T Consensus 158 ~l~~gdiV~V~G~v~~t------~~GeleI~~~~i~lLska~~~~~~~~p~~--------------~k~~~~~d~e~R~r 217 (659)
T PTZ00385 158 SLRVGDIIGADGVPCRM------QRGELSVAASRMLILSPYVCTDQVVCPNL--------------RGFTVLQDNDVKYR 217 (659)
T ss_pred CCCCCCEEEEEEEEEec------CCceEEEEeeEEEEechhhhccccCCCCC--------------ccccccCChhhhcc
Confidence 79999999999998753 368999999999999994 222221100 00123478999999
Q ss_pred ccceeeec-hhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHHHhh
Q 014856 216 NRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSI 292 (417)
Q Consensus 216 ~R~LdlR~-~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~li 292 (417)
|||||||+ +.++++|++||.|+++||+||.++||+||+||+|+++++++||.+|.+ ++|+.++||+||||||||+||
T Consensus 218 ~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLi 297 (659)
T PTZ00385 218 YRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCI 297 (659)
T ss_pred cceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHh
Confidence 99999975 889999999999999999999999999999999998888889999998 458999999999999999999
Q ss_pred cccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhc-CCC-cc
Q 014856 293 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQ-YPF-EP 370 (417)
Q Consensus 293 ~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~-~~~-~~ 370 (417)
++||+||||||||||||++ +.||||||||||||++|.+ |+|+|+++|+||++++..+.+.....+ .... ... ..
T Consensus 298 vgG~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~~~~~~v~g~~~~~~--~~~~~~g~~~~ 373 (659)
T PTZ00385 298 VGGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYHT-YEDLMPMTEDIFRQLAMRVNGTTVVQI--YPENAHGNPVT 373 (659)
T ss_pred hcccCCEEEEeceecCCCC-CCCccccccceeeeeecCC-HHHHHHHHHHHHHHHHHHhcCCeeEEe--eccccCCCccc
Confidence 9999999999999999998 5899999999999999996 999999999999999999876432111 0000 000 13
Q ss_pred cCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHH
Q 014856 371 LKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 412 (417)
Q Consensus 371 ~~~~~p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E~~L~~ 412 (417)
+++..||+||||.+++. +..|+++.+.+|+++++|..++.
T Consensus 374 i~~~~Pf~Rit~~d~~~--e~~G~d~~~~~dl~~~~e~~~~~ 413 (659)
T PTZ00385 374 VDLGKPFRRVSVYDEIQ--RMSGVEFPPPNELNTPKGIAYMS 413 (659)
T ss_pred ccCCCCceEEeHHHHHH--HHhCCCCCccccCCCHHHHHHHH
Confidence 56778999999766664 45699888888999988875443
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.5e-58 Score=514.62 Aligned_cols=283 Identities=19% Similarity=0.231 Sum_probs=234.2
Q ss_pred CCCCCCCccccccCcceeeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHc
Q 014856 76 NDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRS 138 (417)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~ 138 (417)
.|||||+|..+++. +++.....|++|+|+|| ++++||||++.+.. .++.+..|...
T Consensus 629 ~~pyp~~~~~~~~~------~~~~~~~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g~iQ~v~~~~~~-~~~~~~~~~~~ 701 (1094)
T PRK02983 629 VDPYPVGVPPTHTV------AEALDAPTGEEVSVSGRVLRIRDYGGVLFADLRDWSGELQVLLDASRL-EQGSLADFRAA 701 (1094)
T ss_pred CCCCCCCCcCccCH------HHHHHhcCCCEEEEEEEEEEEeeCCCeEEEEEEeCCeeEEEEEECCcc-chhhHHHHHhc
Confidence 49999999987654 44544577999999999 66799999986432 23345566778
Q ss_pred CCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhcccc
Q 014856 139 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNR 217 (417)
Q Consensus 139 l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R 217 (417)
|+.||+|.|+|++.++ .+|++||++++|.++++| .+||.+..+ ..+.++|+++|
T Consensus 702 l~~gd~V~v~G~v~~t------~~ge~ei~~~~i~ll~k~~~plP~k~~~-------------------~~d~e~R~r~R 756 (1094)
T PRK02983 702 VDLGDLVEVTGTMGTS------RNGTLSLLVTSWRLAGKCLRPLPDKWKG-------------------LTDPEARVRQR 756 (1094)
T ss_pred CCCCCEEEEEEEEEEc------CCCCEEEEEeEEEEEeccCcCCCCcccc-------------------CCChhhcchhh
Confidence 9999999999999864 347899999999999999 899976433 36889999999
Q ss_pred ceeeec-hhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHHHhhcc
Q 014856 218 VIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICG 294 (417)
Q Consensus 218 ~LdlR~-~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~li~~ 294 (417)
|||||+ +.++++|++||.|+++||+||.++||+||+||+|+++.+++++++|.+ +|||.++||+||||||||+++++
T Consensus 757 ~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivg 836 (1094)
T PRK02983 757 YLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVG 836 (1094)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHhc
Confidence 999986 899999999999999999999999999999999996655555679955 79999999999999999999999
Q ss_pred cCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCC
Q 014856 295 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYK 374 (417)
Q Consensus 295 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (417)
|++||||||||||||+++ .||||||||||+|++|.| |+|+|+++|+||+++++.+.+..... .-+.......+++.
T Consensus 837 G~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~d-y~d~m~l~E~li~~i~~~v~~~~~~~--~~~~~~~~~~i~~~ 912 (1094)
T PRK02983 837 GVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHAD-YDTMRDLTRELIQNAAQAAHGAPVVM--RPDGDGVLEPVDIS 912 (1094)
T ss_pred ccCceEEEcceecCCCCC-CCccccccchhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCcEEe--eCCccccccccccC
Confidence 999999999999999985 699999999999999986 99999999999999999987542100 00001112235677
Q ss_pred CCCceeeHHHHHHHHHHcCCCC
Q 014856 375 PKTLRLTFEEGVQMLKDAGVEI 396 (417)
Q Consensus 375 ~p~~rit~~eAi~~L~~~g~~~ 396 (417)
.||+||||.||++ +..|+++
T Consensus 913 ~pf~rit~~eai~--~~~g~~~ 932 (1094)
T PRK02983 913 GPWPVVTVHDAVS--EALGEEI 932 (1094)
T ss_pred CCceEEEHHHHHH--HHhCCCC
Confidence 8999999999997 3445543
No 21
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.4e-56 Score=473.78 Aligned_cols=267 Identities=27% Similarity=0.382 Sum_probs=226.5
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|++|..++.|++|+|+|| +++.+|||+..+. .+++++++..|+.||+|.|+|+|..++
T Consensus 61 ~~cg~l~~~~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~iQvV~~~~~---~~~~~~~~~~L~~esvV~V~G~V~~r~ 137 (652)
T PLN02903 61 HLCGALSVNDVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDE---FPEAHRTANRLRNEYVVAVEGTVRSRP 137 (652)
T ss_pred CchhhcchhhCCCEEEEEEEEEEEecCCCcEEEEEEcCCccEEEEEeCCc---cHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 57899999999999999999 6678999997532 356788889999999999999998753
Q ss_pred -cc--CCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHH
Q 014856 156 -VE--IKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 231 (417)
Q Consensus 156 -~~--~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~ 231 (417)
.+ .+..+|++||.+++|+||++| .+||+.+.+... ....++.++|++|||||||++.++++|+
T Consensus 138 ~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~-------------~~~~~~ee~Rl~~RyLDLR~~~~q~~lr 204 (652)
T PLN02903 138 QESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADE-------------QKDSIKEEVRLRYRVLDLRRPQMNANLR 204 (652)
T ss_pred CcCcCCCCCCCCEEEEEeEEEEEecCCCCCCcccccccc-------------ccccCChhhhhccceeecCCHHHHHHHH
Confidence 22 234468899999999999999 889998765321 0112678999999999999999999999
Q ss_pred HHhHHHHHHHHHhhh-CCcEeecCceeeecCCCCCcceeeeccC--CCceeeccCHHHHHHHhhcccCCceEEEeecccc
Q 014856 232 IQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 308 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~ 308 (417)
+||.|+++||+||.+ +||+||+||+|+.+++||+.+.|...++ +..+||+||||||||++|++|++|||||||||||
T Consensus 205 ~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~ 284 (652)
T PLN02903 205 LRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRD 284 (652)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhcc
Confidence 999999999999997 9999999999999889876654444443 5677899999999999999999999999999999
Q ss_pred CCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 014856 309 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 388 (417)
Q Consensus 309 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~ 388 (417)
|++++.|| ||||||||||+|.+ |+|+|+++|+||+++++.+.+ +++..||+||||.||++
T Consensus 285 E~~~t~Rh-pEFTqLE~E~sf~d-~~dvm~~~E~li~~v~~~~~~-----------------~~~~~PF~rity~eA~~- 344 (652)
T PLN02903 285 EDLRADRQ-PEFTQLDMELAFTP-LEDMLKLNEDLIRQVFKEIKG-----------------VQLPNPFPRLTYAEAMS- 344 (652)
T ss_pred CCCCCCcc-cceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceEEEHHHHHH-
Confidence 99999888 99999999999996 999999999999999987653 12345999999999996
Q ss_pred HHHcCCCCC
Q 014856 389 LKDAGVEID 397 (417)
Q Consensus 389 L~~~g~~~~ 397 (417)
..|.+-+
T Consensus 345 --~ygsDKP 351 (652)
T PLN02903 345 --KYGSDKP 351 (652)
T ss_pred --HHcCCCC
Confidence 4555433
No 22
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-57 Score=458.96 Aligned_cols=283 Identities=22% Similarity=0.332 Sum_probs=237.1
Q ss_pred cCCCCCCCccccccCcc----eeee--ccc-----ccccCCcEEEEEee----------cCceEEEEEeeCCCCccHHHH
Q 014856 75 VNDPQTGKWSEAVSGRE----WTEV--GAL-----NGSLKDQEVLIRGR----------RVSTVQCLATVKPDSVSKEMV 133 (417)
Q Consensus 75 ~~~~~p~~~~~~~~~~~----~~~i--~~l-----~~~~~G~~V~vrgr----------~~~~iQ~v~~~~~~~~~~~~~ 133 (417)
..||||+.|..+++... |... .++ ..+.+|+.+.+|+. .+++||++++++. +..+.+
T Consensus 28 g~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~gkiQ~yi~k~~--~~~~~~ 105 (502)
T COG1190 28 GIDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSGKIQLYVNKDE--VGEEVF 105 (502)
T ss_pred CCCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCceEEEEEeccc--cchhhH
Confidence 35899999988876533 3221 111 13456777666643 6789999999753 344445
Q ss_pred H-HHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChh
Q 014856 134 R-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 211 (417)
Q Consensus 134 ~-~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 211 (417)
+ +.+.+..||+|.|.|.+.+ +.+|+++|.|+++.+|++| .+||-.+++ +.+++
T Consensus 106 ~~~~~~~dlGDiigv~G~~~~------T~~GelSv~v~~~~lLsKsL~pLPeK~hg-------------------L~D~E 160 (502)
T COG1190 106 EALFKKLDLGDIIGVEGPLFK------TKTGELSVSVEELRLLSKSLRPLPEKFHG-------------------LTDKE 160 (502)
T ss_pred HHHHhccccCCEEeeeeeeee------cCCCceEEEEEEEeeecccCCCCChhhcC-------------------CccHH
Confidence 5 6788999999999999875 4578999999999999999 999977554 47899
Q ss_pred hhccccceeeec-hhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHH
Q 014856 212 TRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 288 (417)
Q Consensus 212 tRl~~R~LdlR~-~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~l 288 (417)
+|+|+|||||.. +..+.+|..||.|+++||+||+++||+||+||+|+....+..|.||.+ |.++.++|||+||+|||
T Consensus 161 ~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELyL 240 (502)
T COG1190 161 IRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELYL 240 (502)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHHH
Confidence 999999999998 799999999999999999999999999999999986443333559988 66999999999999999
Q ss_pred HHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCC
Q 014856 289 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPF 368 (417)
Q Consensus 289 q~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 368 (417)
|+||+|||+||||||++||||+. +.||||||||||+|+||+| |+|+|+++|+||++++..+.+.. .-.|+.
T Consensus 241 KRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaD-y~D~m~ltE~Li~~~a~~v~gt~-------~v~y~~ 311 (502)
T COG1190 241 KRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYAD-YEDLMDLTEELIKELAKEVNGTT-------KVTYGG 311 (502)
T ss_pred HHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcCCe-------EEEECC
Confidence 99999999999999999999996 8999999999999999997 99999999999999999988632 224556
Q ss_pred cccCCCCCCceeeHHHHHHHHHHcCCC
Q 014856 369 EPLKYKPKTLRLTFEEGVQMLKDAGVE 395 (417)
Q Consensus 369 ~~~~~~~p~~rit~~eAi~~L~~~g~~ 395 (417)
..++|.+||+||++.+|+. ...|++
T Consensus 312 ~~id~~~pf~ri~m~dal~--e~~g~~ 336 (502)
T COG1190 312 QEIDFSKPFKRITMVDALK--EYLGVD 336 (502)
T ss_pred EeEecCCCeeeeehHHHHH--HHhCcc
Confidence 6789999999999999996 566765
No 23
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=1.9e-55 Score=465.87 Aligned_cols=257 Identities=26% Similarity=0.434 Sum_probs=220.2
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|+++.....|++|+|+|| +++.||||++.+ .++++++..|+.||+|.|+|+|...+
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~iQvv~~~~-----~~~~~~~~~L~~esvV~V~G~v~~r~ 78 (583)
T TIGR00459 4 HYCGQLRTEHLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGIVQVVCDPD-----ADALKLAKGLRNEDVVQVKGKVSARP 78 (583)
T ss_pred eeHhhcchhhCCCEEEEEEEEEEEEcCCCcEEEEEEeCCccEEEEEeCC-----HHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 45677877889999999999 567999999753 45677889999999999999998643
Q ss_pred -ccC--CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 156 -VEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 156 -~~~--~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
.++ +.++|++||.+++|.+|++|..+|+.+.+. .++.++|++|||||||++.++++|++
T Consensus 79 ~~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~~------------------~~~~~~Rl~~RyLDLR~~~~~~~lr~ 140 (583)
T TIGR00459 79 EGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKT------------------DAEEEVRLKYRYLDLRRPEMQQRLKL 140 (583)
T ss_pred ccccCccCCCCcEEEEEeEEEEeecCCCCCCccccc------------------ccchhhhcccceEEcCCHHHHHHHHH
Confidence 222 245789999999999999997778765421 25779999999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeecc--CCCce-eeccCHHHHHHHhhcccCCceEEEeeccccC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAE 309 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~-~L~~Spql~lq~li~~g~~rVfeIgp~FR~E 309 (417)
||.|+++||+||.++||+||+||+|+++++||+ .+|.+.+ ++..+ +|+||||||||+||++|++|||+||||||||
T Consensus 141 Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eGa-r~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E 219 (583)
T TIGR00459 141 RHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGA-RDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDE 219 (583)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeccCCCCCC-cceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCC
Confidence 999999999999999999999999998888865 5576654 35554 4999999999999999999999999999999
Q ss_pred CCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 014856 310 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 389 (417)
Q Consensus 310 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L 389 (417)
++++.|| |||||||+||+|.+ |+|+|+++|+||+++++.+.+ +++..||+||||.||++
T Consensus 220 ~~~t~r~-pEFT~le~E~af~d-~~dvm~~~E~li~~v~~~v~~-----------------~~~~~pf~r~ty~ea~~-- 278 (583)
T TIGR00459 220 DLRADRQ-PEFTQIDMEMSFMT-QEDVMELIEKLVSHVFLEVKG-----------------IDLKKPFPVMTYAEAME-- 278 (583)
T ss_pred CCCCCCC-cccCcceeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceEEEHHHHHH--
Confidence 9999888 99999999999996 999999999999999998764 23457999999999997
Q ss_pred HHcCCC
Q 014856 390 KDAGVE 395 (417)
Q Consensus 390 ~~~g~~ 395 (417)
..|.+
T Consensus 279 -~yGsD 283 (583)
T TIGR00459 279 -RYGSD 283 (583)
T ss_pred -HHCCC
Confidence 44554
No 24
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-54 Score=462.28 Aligned_cols=260 Identities=28% Similarity=0.432 Sum_probs=224.8
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.++++...+.|++|+|+|| +++.||||+.. . .++++++..|+.||+|.|+|+|...+
T Consensus 6 ~~~~~l~~~~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~iQ~v~~~----~-~~~~~~~~~l~~es~V~V~G~v~~~~ 80 (588)
T PRK00476 6 HYCGELRESHVGQTVTLCGWVHRRRDHGGLIFIDLRDREGIVQVVFDP----D-AEAFEVAESLRSEYVIQVTGTVRARP 80 (588)
T ss_pred eeHHHhhHHhCCCEEEEEEEEEEEEeCCCeEEEEEEeCCceEEEEEeC----C-HHHHHHHhCCCCCCEEEEEEEEEecC
Confidence 45677777888999999999 67789999974 1 56778889999999999999998743
Q ss_pred -ccC--CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 156 -VEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 156 -~~~--~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
.++ +..+|++||.+++|.|||+|.++|+.+.+.. ..+.++|++|||||||++.++++|++
T Consensus 81 ~~~~n~~~~~g~~El~~~~i~il~~a~~lP~~~~~~~-----------------~~~~~~Rl~~R~LdlR~~~~~~~l~~ 143 (588)
T PRK00476 81 EGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEE-----------------DVSEELRLKYRYLDLRRPEMQKNLKL 143 (588)
T ss_pred CcccCccCCCCcEEEEEeEEEEEecCCCCCCcccccc-----------------cCChhhhhhcceEeecCHHHHHHHHH
Confidence 222 2346889999999999999977888764421 15789999999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeec---cCCCceeeccCHHHHHHHhhcccCCceEEEeeccccC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 309 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E 309 (417)
||.|++++|+||.++||+||+||+|+++++|| |.+|.+. +.+..+||+||||||||+++++|++|||+||||||||
T Consensus 144 Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~eg-a~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E 222 (588)
T PRK00476 144 RSKVTSAIRNFLDDNGFLEIETPILTKSTPEG-ARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDE 222 (588)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecCCCCC-CccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecC
Confidence 99999999999999999999999999888886 5668876 6788889999999999999999999999999999999
Q ss_pred CCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 014856 310 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 389 (417)
Q Consensus 310 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L 389 (417)
++++.||+ |||||||||+|.+ |+|+|+++|+||+++++.+.+. ++..||+||||.||++
T Consensus 223 ~~~~~r~~-EFt~le~e~af~~-~~dvm~~~E~li~~i~~~~~~~-----------------~~~~pf~r~ty~ea~~-- 281 (588)
T PRK00476 223 DLRADRQP-EFTQIDIEMSFVT-QEDVMALMEGLIRHVFKEVLGV-----------------DLPTPFPRMTYAEAMR-- 281 (588)
T ss_pred CCCCCcCc-ccccceeeecCCC-HHHHHHHHHHHHHHHHHHHhCc-----------------cCCCCceEEEHHHHHH--
Confidence 99999987 9999999999996 9999999999999999887531 2346899999999996
Q ss_pred HHcCCCCC
Q 014856 390 KDAGVEID 397 (417)
Q Consensus 390 ~~~g~~~~ 397 (417)
..|.+.+
T Consensus 282 -~yg~dkP 288 (588)
T PRK00476 282 -RYGSDKP 288 (588)
T ss_pred -HHCCCCC
Confidence 5576544
No 25
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1.4e-54 Score=465.44 Aligned_cols=273 Identities=26% Similarity=0.359 Sum_probs=223.0
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|++|..++.|+.|+|+|| +++.||||++.+. .+.++++++..|+.||+|.|+|+|..++
T Consensus 7 ~~cg~l~~~~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~iQvV~~~~~--~~~~~~~~~~~L~~EsvV~V~G~v~~r~ 84 (706)
T PRK12820 7 SFCGHLSLDDTGREVCLAGWVDAFRDHGELLFIHLRDRNGFIQAVFSPEA--APADVYELAASLRAEFCVALQGEVQKRL 84 (706)
T ss_pred cccccCChhhCCCEEEEEEEEEEEEcCCCcEEEEEEeCCccEEEEEeCCc--CCHHHHHHHhcCCCCCEEEEEeEEeccC
Confidence 57899999999999999999 6678999998542 4567888999999999999999998743
Q ss_pred ccC---CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 156 VEI---KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 156 ~~~---~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
... +..+|++||.+++|.||++|..+|+.+.+...+.. ..+..+..++.++|++|||||||++.++++|++
T Consensus 85 ~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~------~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~ 158 (706)
T PRK12820 85 EETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAG------AGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAK 158 (706)
T ss_pred ccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccc------cccccccccCHhhhhhCceeecCCHHHHHHHHH
Confidence 221 23458899999999999999777877654211000 000112236889999999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcce-eeeccCCCce-eeccCHHHHHHHhhcccCCceEEEeeccccCC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV-FRLDYKGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAED 310 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~-F~v~~~~~~~-~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~ 310 (417)
||.|+++||+||.++||+||+||+|+.++++|+.+. +...+++..+ +|+||||||||++|++|++|||+||||||||+
T Consensus 159 Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~ 238 (706)
T PRK12820 159 RHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDED 238 (706)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCC
Confidence 999999999999999999999999999888875542 2334455544 59999999999999999999999999999999
Q ss_pred CCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 014856 311 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 390 (417)
Q Consensus 311 s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~ 390 (417)
+++.|| ||||||||||+|.+ ++|+|+++|+||+++++ +. + .++..||+||||.||++.
T Consensus 239 ~~t~r~-pEFT~LE~E~af~d-~~dvm~l~E~li~~v~~-~~----------~-------~~~~~pf~r~ty~eA~~~-- 296 (706)
T PRK12820 239 LRPNRQ-PEFTQLDIEASFID-EEFIFELIEELTARMFA-IG----------G-------IALPRPFPRMPYAEAMDT-- 296 (706)
T ss_pred CCCCcC-ccccccceeeccCC-HHHHHHHHHHHHHHHHH-hc----------C-------cCCCCCceEEEHHHHHHH--
Confidence 988877 99999999999996 99999999999999885 11 0 123469999999999974
Q ss_pred HcCCCC
Q 014856 391 DAGVEI 396 (417)
Q Consensus 391 ~~g~~~ 396 (417)
.|.+-
T Consensus 297 -yG~DK 301 (706)
T PRK12820 297 -TGSDR 301 (706)
T ss_pred -hCCCC
Confidence 45543
No 26
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-54 Score=440.24 Aligned_cols=260 Identities=29% Similarity=0.446 Sum_probs=232.5
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|++|..++.|++|++.|| ..+.+|+|++.+ .+.+.++.+..|+.|++|.|+|+|...+
T Consensus 4 ~~cg~l~~~~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~GivQvv~~~~---~~~~~~~~a~~lr~E~vi~V~G~V~~R~ 80 (585)
T COG0173 4 HYCGELRESHVGQTVTLSGWVHRRRDHGGLIFIDLRDREGIVQVVFDPE---DSPEAFEVASRLRNEFVIQVTGTVRARP 80 (585)
T ss_pred eeccccCHHHCCCEEEEEeeeeeccccCCeEEEEcccCCCeEEEEECCc---cCHHHHHHHHhcCceEEEEEEEEEEecC
Confidence 56889999999999999999 567999999853 3578889999999999999999888643
Q ss_pred c---cCCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 156 V---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 156 ~---~~~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
. +.+-.||++||++++|.|||.|.+|||.+.+.. .++.|+||+|||||||.|.++..+++
T Consensus 81 e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~-----------------~~~Ee~RLkYRyLDLRR~~m~~~l~l 143 (585)
T COG0173 81 EGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDET-----------------NASEEIRLKYRYLDLRRPEMQKNLKL 143 (585)
T ss_pred ccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCC-----------------CcchhhhhhhhhhhhcCHHHHHHHHH
Confidence 3 344578999999999999999999999987631 26789999999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeec---cCCCceeeccCHHHHHHHhhcccCCceEEEeeccccC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 309 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E 309 (417)
||.++.++|+||+++||+||+||+|+.+++|| |..|.|+ +-|..+-|.||||||||.||++||+|+|+|++|||+|
T Consensus 144 R~kv~~~iR~~ld~~gF~EiETPiLtkSTPEG-ARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDE 222 (585)
T COG0173 144 RSKVTKAIRNFLDDQGFLEIETPILTKSTPEG-ARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDE 222 (585)
T ss_pred HHHHHHHHHHHHhhcCCeEeecCccccCCCcc-ccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeeccc
Confidence 99999999999999999999999999998885 8989885 5788999999999999999999999999999999999
Q ss_pred CCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 014856 310 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 389 (417)
Q Consensus 310 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L 389 (417)
+.+..|. |||||+|+||+|.+ -+|+|+++|+|+.++|+.+.+ +++..||+||||.||+.
T Consensus 223 DlRaDRQ-PEFTQiD~EmSF~~-~edv~~~~E~l~~~vf~~~~~-----------------i~l~~pFprmtY~eAm~-- 281 (585)
T COG0173 223 DLRADRQ-PEFTQIDLEMSFVD-EEDVMELIEKLLRYVFKEVKG-----------------IELKTPFPRMTYAEAMR-- 281 (585)
T ss_pred ccccccC-CcceeEeEEeecCC-HHHHHHHHHHHHHHHHHHhcC-----------------CccCCCcccccHHHHHH--
Confidence 9999999 99999999999997 799999999999999998763 23446999999999996
Q ss_pred HHcCCC
Q 014856 390 KDAGVE 395 (417)
Q Consensus 390 ~~~g~~ 395 (417)
..|.+
T Consensus 282 -~YGSD 286 (585)
T COG0173 282 -RYGSD 286 (585)
T ss_pred -HhCCC
Confidence 45544
No 27
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-51 Score=402.26 Aligned_cols=351 Identities=23% Similarity=0.292 Sum_probs=271.0
Q ss_pred CCCCccCChhHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccccc---CCCcCCccccchhhhhccCCCCCCCccccccC
Q 014856 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAA--ASAASALSIEEE---GPLANNYGDVPLQELQSVNDPQTGKWSEAVSG 89 (417)
Q Consensus 15 ~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~--~~~~~~~~~~~~---d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~ 89 (417)
++.=++.||++|||.+|.=..+.+|.+++.. ++.+++.+++.+ ...-..+-.+ +.
T Consensus 50 ~e~~e~~sk~~Lkk~~kg~~~~~~k~~k~~~~ea~~~ek~~~~le~a~ki~ised~sl--------------------p~ 109 (545)
T KOG0555|consen 50 SEEYEPISKSALKKIKKGWVRECKKSAKASQKEAEASEKREKNLEEAKKITISEDKSL--------------------PA 109 (545)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHhhhcccccCCCCC--------------------ch
Confidence 3444689999999999877666555543311 111111111111 1111111111 22
Q ss_pred cceeeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEe
Q 014856 90 REWTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 152 (417)
Q Consensus 90 ~~~~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 152 (417)
.+-++|.+.. +..|+.|.|-|| +.+.||||++.+-. .+- -+-.|+.+|.|.|.|+++
T Consensus 110 ak~iki~~s~-~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gflqCVl~~kl~-~~y----d~~~Ls~essv~vYG~i~ 183 (545)
T KOG0555|consen 110 AKKIKIYDST-ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGFLQCVLSDKLC-QSY----DALTLSTESSVTVYGTIK 183 (545)
T ss_pred hheeeecccc-cccCceEEeehhhHhhhhcCceEEEEEecCCceEEEEEcchhh-hhh----ccccccccceEEEEEEEe
Confidence 3445666543 588999999999 77899999985321 111 123599999999999999
Q ss_pred cCCccCCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 153 VPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 153 ~~~~~~~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
+.+. .|++.|+.||.|.-++|++.++.--+... .++ -.+.+..|+||||-+|....+.++++
T Consensus 184 ~~p~-GK~apgghEl~vdy~Eiig~Apag~~~n~---lne--------------~s~~~~~LdnrHl~iRge~~s~vLK~ 245 (545)
T KOG0555|consen 184 KLPE-GKSAPGGHELNVDYWEIIGLAPAGGFDNP---LNE--------------ESDVDVLLDNRHLVIRGENASKVLKA 245 (545)
T ss_pred cCcC-CCCCCCCceEEeeeeeeecccCCCccccc---ccc--------------cCCcceEeccceeEEechhHHHHHHH
Confidence 8654 35677999999999999988832222110 000 15677889999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 312 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~ 312 (417)
|+.+++++|++|.++|+.||.+|.|+....|||++.|+++|||.++||+||.||||+.++. .+++||+|.++||||.|+
T Consensus 246 Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQSSQLYLEtclp-Algdvy~I~~SyRAEkSr 324 (545)
T KOG0555|consen 246 RAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYLETCLP-ALGDVYCIQQSYRAEKSR 324 (545)
T ss_pred HHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEEeecccCchhhccchhHHHHHHhhh-hcCceeEecHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999998875 499999999999999999
Q ss_pred CcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhH-HHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHH
Q 014856 313 THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCK-KELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 391 (417)
Q Consensus 313 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~ 391 (417)
|+|||+||||+|+|++|.+ ++++|+.+|.|++..+..+.+... ..+..++..|.. -..||.||.|.|||+.|++
T Consensus 325 TRRHLsEytHVEaE~aflt-fd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~----P~~PFkRm~Y~dAI~wLke 399 (545)
T KOG0555|consen 325 TRRHLSEYTHVEAECAFLT-FDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKA----PKRPFKRMNYSDAIEWLKE 399 (545)
T ss_pred hhhhhhhheeeeeeccccc-HHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCC----CCCchhcCCHHHHHHHHHh
Confidence 9999999999999999997 999999999999999999886433 345555544322 1359999999999999999
Q ss_pred cCCC------CCCCCCCCcHHHHHHHHHhh
Q 014856 392 AGVE------IDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 392 ~g~~------~~~~~dl~te~E~~L~~~vk 415 (417)
+++. .+.++|+....||++.+-|-
T Consensus 400 ~~vk~edg~~fefGdDI~eAaER~mtdtIg 429 (545)
T KOG0555|consen 400 HDVKKEDGTDFEFGDDIPEAAERKMTDTIG 429 (545)
T ss_pred cCCcCccCcccccccchhhHHHHhhhhhcC
Confidence 8654 56679999999999988663
No 28
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-50 Score=400.21 Aligned_cols=282 Identities=27% Similarity=0.394 Sum_probs=245.3
Q ss_pred ccccCCcEEEEEee-------------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCC
Q 014856 99 NGSLKDQEVLIRGR-------------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 159 (417)
Q Consensus 99 ~~~~~G~~V~vrgr-------------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~ 159 (417)
.....|+++.|-|| +...+|||++. ...+.+..|+.|.|.|.+..+ +
T Consensus 15 ~~~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~----------~~~q~la~Gt~i~~~g~l~~~----~ 80 (446)
T KOG0554|consen 15 GHPRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDS----------EQSQLLATGTCISAEGVLKVS----K 80 (446)
T ss_pred cCCCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEech----------HHhhhccccceEEEEeeEEec----c
Confidence 44577899999999 55679999984 234679999999999999876 4
Q ss_pred CCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHHHH
Q 014856 160 GATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGN 238 (417)
Q Consensus 160 ~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~ 238 (417)
+..+++|+.+++|.+++.+ ..+|++.+. ..++...+.-||+.||....+++|+||.+..
T Consensus 81 ~~~q~iel~~eki~~vG~v~~~ypl~Kk~--------------------lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~ 140 (446)
T KOG0554|consen 81 GAKQQIELNAEKIKVVGTVDESYPLQKKK--------------------LTPEMLRDKLHLRSRTAKVGAVLRVRSALAF 140 (446)
T ss_pred chheeeeeeeeEEEEEeecCCCCCCcccc--------------------CCHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 6678899999999999999 778887543 3456666788999999999999999999999
Q ss_pred HHHHHhhhCCcEeecCceeeecCCCCCcceeee--------ccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCC
Q 014856 239 IFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 310 (417)
Q Consensus 239 ~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~ 310 (417)
+++.||.+++|++|+||+|+.++|||++++|.| +|||+++||++|.|||++. ++.++.|||.+||+||||+
T Consensus 141 a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRAEn 219 (446)
T KOG0554|consen 141 ATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRAEN 219 (446)
T ss_pred HHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceeccc
Confidence 999999999999999999999999999999987 6899999999999999995 5678999999999999999
Q ss_pred CCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCc---c--cCCCCCCceeeHHHH
Q 014856 311 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFE---P--LKYKPKTLRLTFEEG 385 (417)
Q Consensus 311 s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~---~--~~~~~p~~rit~~eA 385 (417)
|+++|||.||||+|.|+||++.++|+|.++|.+++++++.+.++|.++++...+..... . ..+..+|.||||.||
T Consensus 220 S~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteA 299 (446)
T KOG0554|consen 220 SHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEA 299 (446)
T ss_pred CCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHH
Confidence 99999999999999999999889999999999999999999999998887654433221 1 112346889999999
Q ss_pred HHHHHHcC-----CCCCCCCCCCcHHHHHHHHHhh
Q 014856 386 VQMLKDAG-----VEIDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 386 i~~L~~~g-----~~~~~~~dl~te~E~~L~~~vk 415 (417)
|++|.+++ .+++|+.||++|||++|++..-
T Consensus 300 ie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~~ 334 (446)
T KOG0554|consen 300 IELLQKAVTKKFKTPPKWGIDLSTEHEKYLVEECF 334 (446)
T ss_pred HHHHHHhcccccccCcccccccchhhHHHHHHHhc
Confidence 99999976 3578999999999999998753
No 29
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2.7e-50 Score=402.69 Aligned_cols=206 Identities=47% Similarity=0.711 Sum_probs=190.0
Q ss_pred CChhhhccccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHH
Q 014856 208 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLH 287 (417)
Q Consensus 208 ~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~ 287 (417)
+++++|++|||||+|++..++++++||.|++.+|+||.++||+||+||+|+++++||++++|.++|||.++||++|||||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~~~yL~~Spql~ 81 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQLY 81 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCCcceecCCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCC
Q 014856 288 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYP 367 (417)
Q Consensus 288 lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~ 367 (417)
||+++++ ++|||+||||||||++++.|||||||||||||+|.++|+|+|+++|+||+++++.+.+.|..++..++ .++
T Consensus 82 lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~-~~~ 159 (322)
T cd00776 82 KEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN-QLN 159 (322)
T ss_pred HHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh-ccC
Confidence 9999987 99999999999999998999999999999999999559999999999999999999999988876542 222
Q ss_pred CcccCCCCCCceeeHHHHHHHHHHcCC--CCCCCCCCCcHHHHHHHHHhh
Q 014856 368 FEPLKYKPKTLRLTFEEGVQMLKDAGV--EIDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 368 ~~~~~~~~p~~rit~~eAi~~L~~~g~--~~~~~~dl~te~E~~L~~~vk 415 (417)
.....+..||+||||.||+++|.+.|. +++|++|+++++|++|+++++
T Consensus 160 ~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~~~ 209 (322)
T cd00776 160 RELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEIVK 209 (322)
T ss_pred cccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHHhC
Confidence 223445679999999999999999987 778999999999999999873
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=5.6e-48 Score=387.74 Aligned_cols=201 Identities=29% Similarity=0.423 Sum_probs=181.5
Q ss_pred CChhhhccccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCC---C----cceeeeccCCCceee
Q 014856 208 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG---G----SAVFRLDYKGQSACL 280 (417)
Q Consensus 208 ~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~eg---g----a~~F~v~~~~~~~~L 280 (417)
.+.++|++||+||+|++..+++|++||.|++++|+||.++||+||+||+|++++++| | +..|.++|||.++||
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL 87 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYL 87 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceee
Confidence 578999999999999999999999999999999999999999999999999876653 2 335778999999999
Q ss_pred ccCHHHHHHHhhcccCCceEEEeeccccCCCCC--cccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHH
Q 014856 281 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKE 358 (417)
Q Consensus 281 ~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~ 358 (417)
++|||||||++ ++|++|||+||||||||++++ +|||||||||||||+|.+ |+|+|+++|+||++++..+.++|..+
T Consensus 88 ~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d-~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 88 ADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGAD-LDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred ccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCC-HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999998865 567999999999999999977 799999999999999985 99999999999999999999999988
Q ss_pred HHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHh
Q 014856 359 LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 359 l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E~~L~~~v 414 (417)
|..++...+ .+..||+||||.||+++|++.|.+..+++||++++|++|++++
T Consensus 166 i~~~~~~~~----~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~~~~ 217 (335)
T PRK06462 166 LEFFGRDLP----HLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLSEHF 217 (335)
T ss_pred HHhcCCccc----cCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHHHHh
Confidence 877654332 2356999999999999999999888888999999999999876
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=4.1e-47 Score=381.38 Aligned_cols=194 Identities=37% Similarity=0.576 Sum_probs=166.1
Q ss_pred ChhhhccccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeec-----cCCCceeeccC
Q 014856 209 NQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQS 283 (417)
Q Consensus 209 ~~etRl~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~S 283 (417)
++|+|++|||||+|++..+++|++||.|+++||+||.++||+||+||+|++++++||+++|.|+ |||.++||++|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~S 80 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQS 80 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SS
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhh
Q 014856 284 PQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVA 363 (417)
Q Consensus 284 pql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~ 363 (417)
||||||+++++|++|||+||||||||+++|.|||||||||||||+|.+ ++++|+++|+||+++++.+..+.. .+ .+
T Consensus 81 pql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~-~~~lm~~~e~li~~i~~~~~~~~~-~~-~~- 156 (335)
T PF00152_consen 81 PQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFAD-YDDLMDLIEELIKYIFKELLENAK-EL-SL- 156 (335)
T ss_dssp SHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSS-HHHHHHHHHHHHHHHHHHHHHHHH-HH-HT-
T ss_pred hHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCc-HHHhHHHHHHHHHHHHHHHhccCc-cc-cc-
Confidence 999999999999999999999999999999999999999999999997 889999999999999999986522 21 11
Q ss_pred hcCCCcccCCCCCCceeeHHHHHHHHHHcCCCCCC-----------------CCCCCcHHHHHHHH
Q 014856 364 KQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDP-----------------LGDLNTESERKLGQ 412 (417)
Q Consensus 364 ~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~~~~~-----------------~~dl~te~E~~L~~ 412 (417)
.+++..||+||+|.||++++...+.++.. +.+|++..|+.|+.
T Consensus 157 ------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~ 216 (335)
T PF00152_consen 157 ------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVE 216 (335)
T ss_dssp ------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHH
T ss_pred ------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhh
Confidence 24455689999999999999987755543 34567777877763
No 32
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-45 Score=369.11 Aligned_cols=265 Identities=25% Similarity=0.372 Sum_probs=223.1
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecC-
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP- 154 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~- 154 (417)
+.|++|....+|++|.++|| ..+.||+.++.+.. ....+....++.||+|.|.|+|+..
T Consensus 36 ~~~~el~~~~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~vq~lls~~s~---~l~~~~~~~v~~e~vv~v~gtvv~Rp 112 (628)
T KOG2411|consen 36 SLCGELSVNDVGKKVVLCGWLELHRVHKMLTFFNLRDAYGIVQQLLSPDSF---PLAQKLENDVPLEDVVQVEGTVVSRP 112 (628)
T ss_pred ccchhhccCccCCEEEEeeeeeeeeccccceEEEeeccCcceEEEecchhh---hHHhcccCCCChhheEeeeeeEeccc
Confidence 56888888899999999999 56678888775321 1112344569999999999998864
Q ss_pred --CccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHH
Q 014856 155 --DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 231 (417)
Q Consensus 155 --~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~ 231 (417)
..+.+..+|.+|+..+++++++++ ..+|+.+.|....+ .+.+..+||++||||||.+.+|..+|
T Consensus 113 ~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld-------------~~~~er~rl~~RyldLR~~kmq~nLr 179 (628)
T KOG2411|consen 113 NESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELD-------------DLAGERIRLRFRYLDLRRPKMQNNLR 179 (628)
T ss_pred ccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhh-------------ccccccccchhhhhhhccHHHHHHHH
Confidence 234566779999999999999999 99999998864321 13567889999999999999999999
Q ss_pred HHhHHHHHHHHHhhh-CCcEeecCceeeecCCCCCcceeeecc---CCCceeeccCHHHHHHHhhcccCCceEEEeeccc
Q 014856 232 IQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDY---KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 307 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~---~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR 307 (417)
.||.+...+|+||.+ .||+||+||+|-.. +.|||..|.|.. -|..+-|.||||.||||||++|++|+|+|++|||
T Consensus 180 lRS~~v~~iR~yl~n~~GFvevETPtLFkr-TPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfR 258 (628)
T KOG2411|consen 180 LRSNVVKKIRRYLNNRHGFVEVETPTLFKR-TPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFR 258 (628)
T ss_pred HHHHHHHHHHHHHhhhcCeeeccCcchhcc-CCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhc
Confidence 999999999999977 57999999999975 456788898854 3778999999999999999999999999999999
Q ss_pred cCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHH
Q 014856 308 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 387 (417)
Q Consensus 308 ~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~ 387 (417)
+|+++..|+ |||||+|+||+|.+ .+|+|.++|++|.+++....+ +....||+||||++|++
T Consensus 259 DEdlR~DRQ-PEFTQvD~EMsF~~-~~dim~liEdll~~~ws~~k~-----------------~~l~~PF~riTY~~Am~ 319 (628)
T KOG2411|consen 259 DEDLRADRQ-PEFTQVDMEMSFTD-QEDIMKLIEDLLRYVWSEDKG-----------------IQLPVPFPRITYADAMD 319 (628)
T ss_pred ccccCcccC-CcceeeeeEEeccC-HHHHHHHHHHHHHHhchhhcC-----------------CCCCCCcccccHHHHHH
Confidence 999988888 99999999999997 799999999999999887653 12356999999999997
Q ss_pred HHHHcCCCC
Q 014856 388 MLKDAGVEI 396 (417)
Q Consensus 388 ~L~~~g~~~ 396 (417)
..|.+-
T Consensus 320 ---~YG~DK 325 (628)
T KOG2411|consen 320 ---KYGSDK 325 (628)
T ss_pred ---HhCCCC
Confidence 556543
No 33
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=1.8e-41 Score=336.54 Aligned_cols=163 Identities=21% Similarity=0.309 Sum_probs=147.9
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeec-CCCCCcceeeeccCC-----CceeeccCHHHHHHHhhcccCCceEEEe
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEGGSAVFRLDYKG-----QSACLAQSPQLHKQMSICGDFGRVFETG 303 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~-~~egga~~F~v~~~~-----~~~~L~~Spql~lq~li~~g~~rVfeIg 303 (417)
+++||.|++++|+||.++||+||+||+|+++ .+|+|+++|+++||+ .++||+||||||+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 4789999999999999999999999999987 578899999999876 6999999999999999999999999999
Q ss_pred eccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHH
Q 014856 304 PVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 383 (417)
Q Consensus 304 p~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~ 383 (417)
||||||++ ++||||||||||||++|.+ |+|+|+++|+||+++++.+ ..||+||||.
T Consensus 81 p~FRaE~~-~~rHl~EFtmLE~e~~~~d-~~d~m~~~e~li~~i~~~~----------------------~~~~~~it~~ 136 (304)
T TIGR00462 81 KVFRNGER-GRRHNPEFTMLEWYRPGFD-YHDLMDEVEALLQELLGDP----------------------FAPWERLSYQ 136 (304)
T ss_pred CceeCCCC-CCCcccHHHhHHHHHHcCC-HHHHHHHHHHHHHHHHHhc----------------------CCCcEEEEHH
Confidence 99999998 6899999999999999986 9999999999999998751 2467888888
Q ss_pred HHHH-----------------HHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 014856 384 EGVQ-----------------MLKDAGVEIDPLGDLNTESERKLGQLVLE 416 (417)
Q Consensus 384 eAi~-----------------~L~~~g~~~~~~~dl~te~E~~L~~~vke 416 (417)
||++ ++++.|+++++.+|+++.+|+.|+++|..
T Consensus 137 ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~ 186 (304)
T TIGR00462 137 EAFLRYAGIDPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEP 186 (304)
T ss_pred HHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHH
Confidence 8854 67788888888899999999999999864
No 34
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=2e-40 Score=332.39 Aligned_cols=178 Identities=24% Similarity=0.370 Sum_probs=149.8
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHHHhhcccCCceEE
Q 014856 224 LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFE 301 (417)
Q Consensus 224 ~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~li~~g~~rVfe 301 (417)
+.++++|++||.|+++||+||.++||+||+||+|+++.+++++++|.+ +||+.++||+||||||+|+++++|++|||+
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~ 81 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYE 81 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEE
Confidence 578999999999999999999999999999999998776667889988 789999999999999999999999999999
Q ss_pred EeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceee
Q 014856 302 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 381 (417)
Q Consensus 302 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit 381 (417)
||||||||++ +.|||||||||||||+|.+ |+|+|+++|+||+++++.+.+.+ ++.. ....+.+..||+|||
T Consensus 82 i~~~FR~E~~-~~rHl~EFt~le~e~~~~~-~~~~m~~~e~li~~i~~~~~~~~--~~~~-----~~~~~~~~~pf~rit 152 (329)
T cd00775 82 IGRNFRNEGI-DLTHNPEFTMIEFYEAYAD-YNDMMDLTEDLFSGLVKKINGKT--KIEY-----GGKELDFTPPFKRVT 152 (329)
T ss_pred EeccccCCCC-CCCCCCceEEEEEeeecCC-HHHHHHHHHHHHHHHHHHHhCCc--eeec-----CCccccCCCCceEEE
Confidence 9999999998 6899999999999999985 99999999999999999887653 2221 122234456999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCcH-HHHHHHH
Q 014856 382 FEEGVQMLKDAGVEIDPLGDLNTE-SERKLGQ 412 (417)
Q Consensus 382 ~~eAi~~L~~~g~~~~~~~dl~te-~E~~L~~ 412 (417)
|.||++. ..|+++.+.++..+. .++.++.
T Consensus 153 y~eA~~~--~~g~~~~~~~~~~~~~~~~~~~~ 182 (329)
T cd00775 153 MVDALKE--KTGIDFPELDLEQPEELAKLLAK 182 (329)
T ss_pred HHHHHHH--HhCCCcccccccCCHHHHHHHHH
Confidence 9999984 468776555544443 3344444
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=3.3e-37 Score=301.17 Aligned_cols=152 Identities=30% Similarity=0.471 Sum_probs=138.5
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccC--CCceeeccCHHHHHHHhhcccCCceEEEeeccc
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 307 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR 307 (417)
|++||.|++.+|+||.++||+||+||+|+++.+++|+++|.++|+ |.++||++|||||+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 579999999999999999999999999999889999999999988 999999999999999999999999999999999
Q ss_pred cCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHH
Q 014856 308 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 387 (417)
Q Consensus 308 ~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~ 387 (417)
+|. .|.||++||||||+||+|.+ |+|+|+++|+||+++++.+.+.+..++.. ...++..||+||||.||++
T Consensus 81 ~e~-~~~~hl~EF~~le~e~~~~~-~~dvm~~~e~lv~~i~~~~~~~~~~~~~~-------~~~~~~~~~~rit~~ea~~ 151 (269)
T cd00669 81 NED-LRARHQPEFTMMDLEMAFAD-YEDVIELTERLVRHLAREVLGVTAVTYGF-------ELEDFGLPFPRLTYREALE 151 (269)
T ss_pred CCC-CCCCcccceeEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhccccccccc-------cccccCCCceEeeHHHHHH
Confidence 994 79999999999999999995 99999999999999999998877665421 1224557999999999999
Q ss_pred HHH
Q 014856 388 MLK 390 (417)
Q Consensus 388 ~L~ 390 (417)
+|.
T Consensus 152 ~~~ 154 (269)
T cd00669 152 RYG 154 (269)
T ss_pred HhC
Confidence 885
No 36
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=3.9e-36 Score=295.18 Aligned_cols=151 Identities=32% Similarity=0.514 Sum_probs=131.3
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccC---CCceeeccCHHHHHHHhhcccCCceEEEeecc
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK---GQSACLAQSPQLHKQMSICGDFGRVFETGPVF 306 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~---~~~~~L~~Spql~lq~li~~g~~rVfeIgp~F 306 (417)
+++||.|+++||+||.++||+||+||+|++++++|+ .+|.+.|+ +..+||+||||||||+++++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~-~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGA-RDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCC-CCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 478999999999999999999999999998888765 55988875 35566999999999999999999999999999
Q ss_pred ccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHH
Q 014856 307 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 386 (417)
Q Consensus 307 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi 386 (417)
|+|++++.||+ ||||||||++|.+ |+|+|+++|+||++++..+.+. .+..||+||||.||+
T Consensus 80 R~e~~~~~r~~-Ef~~~e~e~~~~~-~~dlm~~~e~li~~i~~~~~~~-----------------~~~~p~~rity~eA~ 140 (280)
T cd00777 80 RDEDLRADRQP-EFTQIDIEMSFVD-QEDIMSLIEGLLKYVFKEVLGV-----------------ELTTPFPRMTYAEAM 140 (280)
T ss_pred eCCCCCCCccc-eeEEeEeeeccCC-HHHHHHHHHHHHHHHHHHHhCC-----------------CCCCCCceeeHHHHH
Confidence 99999887775 9999999999995 9999999999999999887542 124689999999999
Q ss_pred HHHHHcCCCCCCCCCCC
Q 014856 387 QMLKDAGVEIDPLGDLN 403 (417)
Q Consensus 387 ~~L~~~g~~~~~~~dl~ 403 (417)
+. .|+++.|+.|+.
T Consensus 141 ~~---~~~~~~~~~d~~ 154 (280)
T cd00777 141 ER---YGFKFLWIVDFP 154 (280)
T ss_pred HH---hCCCCccccCCc
Confidence 85 466666776764
No 37
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=7.4e-34 Score=282.38 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=135.5
Q ss_pred HHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCC-CCcceeeeccC------CCceeeccCHHHHHHHhhcccCCce
Q 014856 227 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE-GGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRV 299 (417)
Q Consensus 227 ~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e-gga~~F~v~~~------~~~~~L~~Spql~lq~li~~g~~rV 299 (417)
..+|++|+.|++.||+||.++||+||+||+|+..... ....+|.++|+ |+.+||+||||+|+|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 4689999999999999999999999999999865432 34557999887 7999999999999999999999999
Q ss_pred EEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCce
Q 014856 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLR 379 (417)
Q Consensus 300 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~r 379 (417)
|+||||||||++ |.||++||||||||++|.+ |+|+|+++|+||++++.. .||++
T Consensus 82 f~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d-~~dlm~~~E~li~~i~~~------------------------~~~~~ 135 (306)
T PRK09350 82 FQICKSFRNEEA-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDC------------------------EPAES 135 (306)
T ss_pred EEecceeecCCC-CCCCCcHHHhhhhhhhCCC-HHHHHHHHHHHHHHHHhc------------------------CCceE
Confidence 999999999998 9999999999999999996 999999999999988752 24666
Q ss_pred eeHHHHH-----------------HHHHHcCC--CCCCCCCCCcHHHHHHHHHhh
Q 014856 380 LTFEEGV-----------------QMLKDAGV--EIDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 380 it~~eAi-----------------~~L~~~g~--~~~~~~dl~te~E~~L~~~vk 415 (417)
|+|.+|+ +++.+.|+ ..+..+++.+..++.++.+|.
T Consensus 136 i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve 190 (306)
T PRK09350 136 LSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVE 190 (306)
T ss_pred EEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 6766665 34445565 334445677777777777664
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-27 Score=228.02 Aligned_cols=139 Identities=24% Similarity=0.383 Sum_probs=121.3
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecC-CCCCcceeeeccC------CCceeeccCHHHHHHHhhcccCCceEEE
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SEGGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRVFET 302 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-~egga~~F~v~~~------~~~~~L~~Spql~lq~li~~g~~rVfeI 302 (417)
+..|+.|+..||.||.++||+||+||.|+.+. .|..-.+|.+.|+ +.++||++|||+++|+|+++|-+++|+|
T Consensus 16 ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ifql 95 (322)
T COG2269 16 LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIFQL 95 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcchhh
Confidence 77899999999999999999999999998653 2334558999885 3789999999999999999999999999
Q ss_pred eeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeH
Q 014856 303 GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 382 (417)
Q Consensus 303 gp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~ 382 (417)
|+||||++ .+.+|+|||||||||..+.+ |+-+|+.+.+|+..++.- .++.++||
T Consensus 96 ~kvfRN~E-~G~~H~PEFTMLEWYrv~~d-~~~lm~e~~~Ll~~vl~~------------------------~~~E~ls~ 149 (322)
T COG2269 96 GKVFRNEE-MGRLHNPEFTMLEWYRVGCD-YYRLMNEVDDLLQLVLEC------------------------VEAERLSY 149 (322)
T ss_pred hHHHhccc-ccccCCCceeEeeeeccCCc-HHHHHHHHHHHHHHHHcc------------------------CCcceeeH
Confidence 99999999 59999999999999999997 999999999998877653 24678999
Q ss_pred HHHHHHHHHcCCCC
Q 014856 383 EEGVQMLKDAGVEI 396 (417)
Q Consensus 383 ~eAi~~L~~~g~~~ 396 (417)
+||+. +-.|+++
T Consensus 150 ~eaF~--r~~gid~ 161 (322)
T COG2269 150 QEAFL--RYLGIDP 161 (322)
T ss_pred HHHHH--HHhCCCc
Confidence 99986 6667654
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.67 E-value=3.2e-16 Score=138.03 Aligned_cols=110 Identities=30% Similarity=0.415 Sum_probs=86.4
Q ss_pred ecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-
Q 014856 95 VGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV- 156 (417)
Q Consensus 95 i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~- 156 (417)
++++.....|+.|+|+|| +++.+|||+..+.. +. ++++..|+.||+|.|+|++..++.
T Consensus 5 ~~~~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g~~Q~v~~~~~~---~~-~~~~~~l~~gs~V~V~G~~~~~~~~ 80 (135)
T cd04317 5 CGELRESHVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDPEEA---PE-FELAEKLRNESVIQVTGKVRARPEG 80 (135)
T ss_pred hhhCChhHCCCEEEEEEeEehhcccCCEEEEEEecCCeeEEEEEeCCch---hH-HHHHhCCCCccEEEEEEEEECCCcc
Confidence 455655677999999999 56789999975421 22 577889999999999999987432
Q ss_pred cC--CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechh
Q 014856 157 EI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 225 (417)
Q Consensus 157 ~~--~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~ 225 (417)
++ ++.+|++||++++|++|++|.++|+.+.+.. ..+.++|++|||||||++.
T Consensus 81 ~~~~~~~~~~~El~~~~i~vl~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 81 TVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDV-----------------NVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred ccCCCCCCCcEEEEEeEEEEEECCCCCCCcccccc-----------------CCCHHHhhhcceeecCCCC
Confidence 11 2234779999999999999988999876532 2688999999999999864
No 40
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.53 E-value=4.5e-14 Score=119.77 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=67.0
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccch
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRS 191 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~ 191 (417)
+++.||||++.+.. .+..|.++.+.|+.||+|.|+|++..++ +|++||+++++++||+| .+||+...+.
T Consensus 25 ~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~------~g~~El~~~~~~ils~~~~plP~~~~~~--- 94 (108)
T cd04322 25 ESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTK------TGELSIFVKEFTLLSKSLRPLPEKFHGL--- 94 (108)
T ss_pred CCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecC------CCCEEEEeCEeEEeeccCCCCCCCccCc---
Confidence 56799999976432 2345556666699999999999998753 36799999999999999 8999875542
Q ss_pred HHHHHhhhhcCCCCCCCChhhhccccceee
Q 014856 192 EAEIEKASKEGVQLPRVNQDTRLNNRVIDI 221 (417)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~etRl~~R~Ldl 221 (417)
.+.++|+++|||||
T Consensus 95 ----------------~~~~~r~~~R~ldl 108 (108)
T cd04322 95 ----------------TDVETRYRQRYLDL 108 (108)
T ss_pred ----------------CChhheeecccccC
Confidence 57899999999996
No 41
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.44 E-value=2.7e-13 Score=139.16 Aligned_cols=136 Identities=21% Similarity=0.337 Sum_probs=102.1
Q ss_pred CCChhhhccccceeeechhhHHHHHH-----HhHHHHHHHHHhhhCCcEeecCceeeecCC------CCCcce-eeeccC
Q 014856 207 RVNQDTRLNNRVIDIRTLANQGIFRI-----QSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAV-FRLDYK 274 (417)
Q Consensus 207 ~~~~etRl~~R~LdlR~~~~~~i~~~-----rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~-F~v~~~ 274 (417)
..++|+||++| |.+..+++|.+ .+.|.+++|+||...||.||.||+|+.... .+|... ..+-++
T Consensus 179 ~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 36789999999 88999999999 999999999999999999999999974311 112110 011124
Q ss_pred CCceeec--cCHHHHHHHhh----cccCCceEEEeeccccCCCCCcccccccccceeeechhc-cHHHHHHHHHHHHHHH
Q 014856 275 GQSACLA--QSPQLHKQMSI----CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVTI 347 (417)
Q Consensus 275 ~~~~~L~--~Spql~lq~li----~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 347 (417)
+...+|| ..|.|+..... ...--|+|+||+|||+|.. +.+|++||+|++++....+ .+.|++.++++++..+
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL 333 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC
Confidence 6678999 68898876421 1112489999999999985 7899999999999987532 2666666666666554
No 42
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.28 E-value=3.5e-11 Score=101.22 Aligned_cols=79 Identities=24% Similarity=0.232 Sum_probs=63.5
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecCCCCCcccccccchH
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSE 192 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~ 192 (417)
+++.+|||+..+ .++++++.+..|+.||+|.|+|++...+.. .+++||.+++|+++++|.++|++..
T Consensus 25 ~~g~iQ~v~~~~---~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~----~~~~Ei~~~~i~vl~~a~~~pi~~~------ 91 (103)
T cd04319 25 STGIVQAVFSKD---LNEEAYREAKKVGIESSVIVEGAVKADPRA----PGGAEVHGEKLEIIQNVEFFPITED------ 91 (103)
T ss_pred CCeeEEEEEeCC---CCHHHHHHHhCCCCCCEEEEEEEEEECCCC----CCCEEEEEEEEEEEecCCCCccCCC------
Confidence 556899999753 346677778899999999999999876432 3469999999999999977887521
Q ss_pred HHHHhhhhcCCCCCCCChhhhccccce
Q 014856 193 AEIEKASKEGVQLPRVNQDTRLNNRVI 219 (417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~etRl~~R~L 219 (417)
.+.++|++||||
T Consensus 92 ---------------~~~~~~~~~rhL 103 (103)
T cd04319 92 ---------------ASDEFLLDVRHL 103 (103)
T ss_pred ---------------CCHHHHhhccCC
Confidence 267999999997
No 43
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.27 E-value=3.9e-11 Score=101.80 Aligned_cols=86 Identities=30% Similarity=0.408 Sum_probs=71.0
Q ss_pred ecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCcc
Q 014856 95 VGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 157 (417)
Q Consensus 95 i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 157 (417)
++++.....|+.|+|+|| +++.+|||+..+ ..++++++++..|+.||+|.|+|++...+..
T Consensus 3 ~~~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 80 (108)
T cd04316 3 SAEITPELDGEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKK--KVDKELFKTVRKLSRESVISVTGTVKAEPKA 80 (108)
T ss_pred hhhCchhhCCCEEEEEEEEEeeeccCCeEEEEEecCCeeEEEEEeCC--CCCHHHHHHHhCCCCcCEEEEEEEEEeCCCC
Confidence 456666778999999999 566899999843 2467788999999999999999999876432
Q ss_pred CCCCceeEEEEEeEEEEeecC-CCCCcccc
Q 014856 158 IKGATQQVEVQIKKLYCVSRA-AKTPITIE 186 (417)
Q Consensus 158 ~~~~t~~~El~~~~i~vls~~-~~lP~~~~ 186 (417)
.+++||++++|.+|++| .+||+++.
T Consensus 81 ----~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 81 ----PNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred ----CCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 35799999999999999 89998754
No 44
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.27 E-value=4.7e-11 Score=100.18 Aligned_cols=75 Identities=44% Similarity=0.632 Sum_probs=60.7
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCC-ceeEEEEEeEEEEeecC-CCCCccccc
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVEVQIKKLYCVSRA-AKTPITIED 187 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~-t~~~El~~~~i~vls~~-~~lP~~~~~ 187 (417)
+++.+|||+..+....++++++++..|+.||+|.|+|++..++++++++ ++++||++++|++|++| .+||++..|
T Consensus 26 ~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~il~~~~~~~P~~~~d 102 (102)
T cd04320 26 QGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQLED 102 (102)
T ss_pred CCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEEEEEEEEEEEecCCCCCCCCCCC
Confidence 5578999998643223577889999999999999999999876554443 37899999999999999 889997643
No 45
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.18 E-value=4.4e-11 Score=110.57 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHhhhCCcEeecCceeeecCC-CC-C---cceee-eccCCCceeeccCHHHHHHHhhcc----cCCceEE
Q 014856 232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G---SAVFR-LDYKGQSACLAQSPQLHKQMSICG----DFGRVFE 301 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-g---a~~F~-v~~~~~~~~L~~Spql~lq~li~~----g~~rVfe 301 (417)
+|+.+.+.+|++|...||.||.||.|+.... +. | ..... .+..+...+||.|+...+...++. .--|+||
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 4688999999999999999999999976421 11 1 11222 234678899999999999877654 3469999
Q ss_pred EeeccccCCCCCc--ccccccccceeeechhc-----cHHHHHHHHHHHHHHH
Q 014856 302 TGPVFRAEDSYTH--RHLCEFTGLDVEMEIKK-----HYSEVMDIVDCLFVTI 347 (417)
Q Consensus 302 Igp~FR~E~s~t~--rHl~EFt~lE~e~a~~~-----~~~d~m~~~e~li~~i 347 (417)
||+|||+|.+ +. +|+.||+|+++++.... ++.+++.++++++..+
T Consensus 81 ig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCC-ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 9999999975 43 78999999999998753 2567888888777655
No 46
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.92 E-value=4.8e-09 Score=108.18 Aligned_cols=112 Identities=24% Similarity=0.417 Sum_probs=81.9
Q ss_pred HHhHHHHHHHHHhhhCCcEeecCceeeecC------CCCCc----ceeeeccCCCceeec--cCHHHHHHHhh----ccc
Q 014856 232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGS----AVFRLDYKGQSACLA--QSPQLHKQMSI----CGD 295 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga----~~F~v~~~~~~~~L~--~Spql~lq~li----~~g 295 (417)
-.+.+.+.+|++|...||.||.||+|+... .+++. ..|. ++...+|| +.|+|+..... ...
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk---~ee~lvLRPdLTPsLaR~La~N~~~l~~ 317 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPNLYNYLRKLDRALPD 317 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE---ecCceEecccCHHHHHHHHHHhhhhccC
Confidence 467899999999999999999999996211 11121 2444 35578999 88999864322 112
Q ss_pred CCceEEEeeccccCCCCCcccccccccceeeechhc-cHHHHHHHHHHHHHHH
Q 014856 296 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVTI 347 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 347 (417)
--|+|+||+|||+|.. +.+|+.||+|+++++...+ .+.|+..++.+++..+
T Consensus 318 PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~L 369 (453)
T TIGR02367 318 PIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHL 369 (453)
T ss_pred CeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 3499999999999985 8899999999999987632 3667776666555543
No 47
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=98.72 E-value=1e-07 Score=77.21 Aligned_cols=61 Identities=26% Similarity=0.254 Sum_probs=49.2
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
+++.+|++++.+. ..+|++++..|+.||+|.|+|++..++.+. ++++++||+++++++|++
T Consensus 25 ~~~~iQ~v~~~~~---~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~-~~~~~~El~~~~i~il~~ 85 (85)
T cd04100 25 GSGIVQVVVNKEE---LGEFFEEAEKLRTESVVGVTGTVVKRPEGN-LATGEIELQAEELEVLSK 85 (85)
T ss_pred CCeeEEEEEECCc---ChHHHHHHhCCCCCCEEEEEeEEEECCCCC-CCCCCEEEEEeEEEEECC
Confidence 5678999998643 233788999999999999999998765333 456889999999999975
No 48
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.58 E-value=2.6e-07 Score=87.93 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecCCCCC-----c--------ceeeeccCCCceeeccC--HHHHHHHhhcc--cCC
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGG-----S--------AVFRLDYKGQSACLAQS--PQLHKQMSICG--DFG 297 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egg-----a--------~~F~v~~~~~~~~L~~S--pql~lq~li~~--g~~ 297 (417)
.+.+.+|++|...||.||.|+.+++...+-. . .++.+...- ..+||.| |.|.. .++. .--
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~--~l~~N~~~~ 81 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQAR--ALAKLKPPI 81 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHH--HHHhcCCCe
Confidence 4567789999999999999999976521100 0 112221100 3677754 55553 3443 456
Q ss_pred ceEEEeeccccCCCCCcccccccccceeeechhc-cHHHHHHHHHHHHHHHh
Q 014856 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVTIF 348 (417)
Q Consensus 298 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i~ 348 (417)
|+||||+|||++.+ +.+|+|||+||.+.+++.. ++.|++.+++.++..+-
T Consensus 82 ~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 82 RIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELF 132 (218)
T ss_pred eEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999874 5578999999999999861 38999999999997664
No 49
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=98.54 E-value=5.4e-07 Score=72.88 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=46.2
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
+++.+|+++..+.. + . ++++..|+.||+|.|+|++..++.+. ...+++||++++|++|+.
T Consensus 25 ~~~~iQ~v~~~~~~--~-~-~~~~~~l~~es~V~V~G~v~~~~~~~-~~~~~~Ei~~~~i~vl~~ 84 (84)
T cd04323 25 GTGFLQCVLSKKLV--T-E-FYDAKSLTQESSVEVTGEVKEDPRAK-QAPGGYELQVDYLEIIGE 84 (84)
T ss_pred CCeEEEEEEcCCcc--h-h-HHHHhcCCCcCEEEEEEEEEECCccc-CCCCCEEEEEEEEEEEcC
Confidence 56679999975321 2 2 67788999999999999998865443 224679999999999974
No 50
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.44 E-value=1.1e-06 Score=85.26 Aligned_cols=116 Identities=19% Similarity=0.322 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecC--------C-CCCc----ceeee--ccC--CCceeecc--CHHHHHHHhh-c
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGS--------S-EGGS----AVFRL--DYK--GQSACLAQ--SPQLHKQMSI-C 293 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~-egga----~~F~v--~~~--~~~~~L~~--Spql~lq~li-~ 293 (417)
+.+++.+|++|...||.||.+|.+.+.. . +.-+ +.|-+ ++- .....||. ||-+..-+.. .
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~ 99 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHR 99 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhc
Confidence 4577889999999999999999996521 1 1111 13433 111 56777874 5554443311 2
Q ss_pred ccCCceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHHhHH
Q 014856 294 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFDS 350 (417)
Q Consensus 294 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~~ 350 (417)
..--|+|+||+|||+|.. +.+|+|+|.|+|.-+... -++.++..+++.+++++|..
T Consensus 100 ~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~ 156 (247)
T PF01409_consen 100 PPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI 156 (247)
T ss_dssp HSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc
Confidence 234799999999999995 899999999999976653 14888888888888888653
No 51
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.40 E-value=1.4e-06 Score=84.86 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=73.4
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C-----CCcceeee-ccCCCceeec--cCHHHHHHHhh--c--cc
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-----GGSAVFRL-DYKGQSACLA--QSPQLHKQMSI--C--GD 295 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-----gga~~F~v-~~~~~~~~L~--~Spql~lq~li--~--~g 295 (417)
.+++..|.+.+++.|.+.||.||.||.|..... . ...+.|.+ +--|+.+.|+ ..|++..-.+- . ..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 357889999999999999999999999987542 1 12336765 4457788888 34444432111 1 12
Q ss_pred CCceEEEeeccccCCCCCcccccccccceeeechhc
Q 014856 296 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 331 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~ 331 (417)
--|.|++|+|||.|.. ...|..||+|+++|+-..+
T Consensus 82 p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 82 PLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 3499999999999986 4668899999999986654
No 52
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.36 E-value=1.2e-06 Score=79.89 Aligned_cols=115 Identities=20% Similarity=0.327 Sum_probs=76.5
Q ss_pred HHhHHHHHHHHHhh-hCCcEeecCceeeecCC-C--C-----CcceeeeccCC-CceeeccCHHHHHHHhh----cc---
Q 014856 232 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKG-QSACLAQSPQLHKQMSI----CG--- 294 (417)
Q Consensus 232 ~rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~-~~~~L~~Spql~lq~li----~~--- 294 (417)
++..|++.+++.+. +.||.||.||.|.+... + | ....|.+.--+ ..++|+-+.+...=.++ ..
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 47889999999999 99999999999998532 0 1 12356664433 56899966543332222 11
Q ss_pred cC-CceEEEeeccccCC--CCCcccccccccceeeechhccHHHHHHHHHHHHHHHh
Q 014856 295 DF-GRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIF 348 (417)
Q Consensus 295 g~-~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 348 (417)
.+ =|+|+||+|||+|. ..+...+-||+|.|++.-..+ ++..+..+.++..+.
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~--~~~~~~~~~~~~~~~ 135 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP--EQSEEEFEELLELYK 135 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS--HHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCC--cccHHHHHHHHHHHH
Confidence 12 38999999999993 234678889999999986643 677776666655443
No 53
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=98.32 E-value=4.7e-06 Score=67.84 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=47.4
Q ss_pred EEEEeecCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 107 VLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 107 V~vrgr~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
+.||...+..+||+++.+ .+.++.+..|+.||+|.|+|++...+......+|++||.+++|.+|++
T Consensus 21 i~LrD~~g~~iQvv~~~~-----~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~~i~il~~ 86 (86)
T cd04321 21 ADLRDPNGDIIQLVSTAK-----KDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVDDIQTLNA 86 (86)
T ss_pred EEEECCCCCEEEEEECCC-----HHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEEEEEEecC
Confidence 445544444699998642 134556678999999999999987543222344789999999999974
No 54
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.28 E-value=4.1e-06 Score=83.38 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=77.7
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecC--CCC---Cc--------ceeeeccCCCceeeccCHHHHHHHhhcccC---
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGS--SEG---GS--------AVFRLDYKGQSACLAQSPQLHKQMSICGDF--- 296 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--~eg---ga--------~~F~v~~~~~~~~L~~Spql~lq~li~~g~--- 296 (417)
...+.+.+|++|...||.|+.||.+.+.. .+. .. +.|.+. ...+||.|-=--+=..+..+.
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N~~~p 150 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEENEKPP 150 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhcCCCC
Confidence 45667788999999999999999997541 010 00 123332 345676543222222333444
Q ss_pred CceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHHhH
Q 014856 297 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 297 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 349 (417)
-|+||||+|||++.. +.+|+|||++|+.-+... -++.|+...++.++..+.-
T Consensus 151 irlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~ 203 (294)
T TIGR00468 151 IRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFG 203 (294)
T ss_pred ceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 599999999999874 678999999999886542 1488999999998877653
No 55
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.24 E-value=5.4e-06 Score=83.65 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecC--------C-CCCc----ceeeeccCCCceeec--cCHHHHHHHhhcccC-C
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGS--------S-EGGS----AVFRLDYKGQSACLA--QSPQLHKQMSICGDF-G 297 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~-egga----~~F~v~~~~~~~~L~--~Spql~lq~li~~g~-~ 297 (417)
+.+...||++|...||.|+.+|.|.+.- . +.-| +.|.+ +....|| .||-+-.-|.- ... -
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp~qir~L~~-~~~Pi 186 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSPVQIRTMEK-QKPPI 186 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcHHHHHHHHh-cCCCe
Confidence 4567888999999999999999986421 1 1112 23433 4556666 67765554432 222 3
Q ss_pred ceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHHhH
Q 014856 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 298 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 349 (417)
|+|++|+|||++.. +.+|.|+|+|+|.-+... -++.++...++.+++.+|.
T Consensus 187 rif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 187 RIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred EEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999984 889999999999755542 2488999999999999986
No 56
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=98.24 E-value=7.8e-06 Score=65.69 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=41.9
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEee
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 176 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls 176 (417)
.+||+++.+.. . ++++..|+.||+|.|+|.+..++.+ ++++||+++++.+++
T Consensus 30 ~lQvv~~~~~~--~---~~~~~~l~~gs~V~v~G~v~~~~~~----~~~~El~~~~i~il~ 81 (82)
T cd04318 30 NLQVVVDKELT--N---FKEILKLSTGSSIRVEGVLVKSPGA----KQPFELQAEKIEVLG 81 (82)
T ss_pred CEEEEEeCccc--C---HHHHhcCCCceEEEEEEEEEeCCCC----CCCEEEEEEEEEEec
Confidence 59999986422 1 5677899999999999999876532 468999999999986
No 57
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.19 E-value=9.9e-06 Score=83.76 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=81.3
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC----CC------Ccceeee-ccCCCceeec--cCHHHHHHHhhcc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EG------GSAVFRL-DYKGQSACLA--QSPQLHKQMSICG 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~----eg------ga~~F~v-~~~~~~~~L~--~Spql~lq~li~~ 294 (417)
.-.+.+..+...+|+.|.+.||.||.||++..... .| ..+.|.+ +--|+.+.|| ..|++..-.+--.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 16 EESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhCC
Confidence 34668889999999999999999999999965321 11 2335664 3357888888 3455554322111
Q ss_pred -cCCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 295 -DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 295 -g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
.--|.|++|+|||+|.+ ...|.-||+|+++|+-..++. -|++.++.+++..
T Consensus 96 ~~p~r~~~~g~vfR~e~~-~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~ 150 (412)
T PRK00037 96 LQPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKA 150 (412)
T ss_pred CCCeEEEEEcCccccCCC-CCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHH
Confidence 23599999999999986 445778999999997554321 4566666555543
No 58
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.16 E-value=9.1e-06 Score=77.12 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=69.1
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-C-CC------cceeeeccC-----CCceeeccCHHHHHHHhhc---
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-GG------SAVFRLDYK-----GQSACLAQSPQLHKQMSIC--- 293 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-gg------a~~F~v~~~-----~~~~~L~~Spql~lq~li~--- 293 (417)
.+++..|.+.+++.|...||.||.||.|..... + +| ...|.+.-- +..++|+-......=.+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 357889999999999999999999999987431 1 12 124555332 4678888443322211111
Q ss_pred ---ccC-CceEEEeeccccCCCC--Ccccccccccceeeechhc
Q 014856 294 ---GDF-GRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKK 331 (417)
Q Consensus 294 ---~g~-~rVfeIgp~FR~E~s~--t~rHl~EFt~lE~e~a~~~ 331 (417)
..+ -|+|++|+|||+|.+. ...-+-||+|.|++.-..+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 123 3899999999999863 1334579999999986543
No 59
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.08 E-value=6.7e-06 Score=80.36 Aligned_cols=116 Identities=17% Similarity=0.094 Sum_probs=79.9
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC------CcceeeeccC-----CCceeeccCHHHHHHHh---
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYK-----GQSACLAQSPQLHKQMS--- 291 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~-----~~~~~L~~Spql~lq~l--- 291 (417)
-.+++..|.+.+++.+.+.||.||.||.|..... ++ +.+.|.+.-. +..++|+-..+-.+=.+
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 4678999999999999999999999999987542 12 2335666332 24688887643222211
Q ss_pred -hcc--cC-CceEEEeeccccCCCCC--cccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 292 -ICG--DF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 292 -i~~--g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
+.+ ++ =|+|+|++|||+|.+.+ .-=.-||+|.|.+..|.+ .+++.+..++++.
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~-~e~~~~~~~~~~~ 169 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHAT-EEEAEEEVLQILD 169 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCC-HHHHHHHHHHHHH
Confidence 222 12 37899999999998632 112459999999988875 6777766666653
No 60
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.04 E-value=2.4e-05 Score=83.10 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=77.5
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeec----------CCCC---Ccceeeec------------------------
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG----------SSEG---GSAVFRLD------------------------ 272 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~----------~~eg---ga~~F~v~------------------------ 272 (417)
......+++.||+.|...||.||.||.+-+. .-.+ -.+.|-++
T Consensus 232 ~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~ 311 (489)
T PRK04172 232 KHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGD 311 (489)
T ss_pred CChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCC
Confidence 3467889999999999999999999998743 0000 01112111
Q ss_pred -------c-----CCCceeeccCHHHHHHHhhc-cc--CCceEEEeeccccCCCCCcccccccccceeeechhc-cHHHH
Q 014856 273 -------Y-----KGQSACLAQSPQLHKQMSIC-GD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEV 336 (417)
Q Consensus 273 -------~-----~~~~~~L~~Spql~lq~li~-~g--~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~ 336 (417)
| .++...||...--..=++++ .+ =-|+|+||+|||+|.. +.+|++||++++..+...+ ++.++
T Consensus 312 ~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~f~el 390 (489)
T PRK04172 312 TGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVSFRDL 390 (489)
T ss_pred CCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEeCCCCHHHH
Confidence 0 12345666332222212222 12 2499999999999985 6789999999999988742 36788
Q ss_pred HHHHHHHHHHH
Q 014856 337 MDIVDCLFVTI 347 (417)
Q Consensus 337 m~~~e~li~~i 347 (417)
+.+++.++..+
T Consensus 391 kg~l~~ll~~l 401 (489)
T PRK04172 391 LGILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHHh
Confidence 88888888765
No 61
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.04 E-value=2.2e-05 Score=80.82 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=79.7
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC-------cceeee-ccCCCceeec--cCHHHHHHHhhc-
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-------SAVFRL-DYKGQSACLA--QSPQLHKQMSIC- 293 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-------a~~F~v-~~~~~~~~L~--~Spql~lq~li~- 293 (417)
.-.+++..+...+++.|.+.||.||.||+|..... .+| .+.|.+ +.-|+.+.|| ..|++....+--
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~ 91 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENK 91 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcc
Confidence 34668899999999999999999999999965321 111 235654 4467888888 445554331111
Q ss_pred --cc-CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 294 --GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 294 --~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
.. --|.|++|+|||.|.+ ...|.-||+|+++|+-..++. -|++.++.+++..
T Consensus 92 ~~~~~p~r~~y~g~vfR~e~~-~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~ 149 (397)
T TIGR00442 92 LLLPKPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKE 149 (397)
T ss_pred cccCCCeEEEEEcCeecCCCC-CCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 11 2499999999999986 445678999999998664421 2555555555543
No 62
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.01 E-value=3.2e-05 Score=77.01 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=67.7
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-------CC-CcceeeeccCCCceeeccCHHH-----HHHHhhc-cc
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLDYKGQSACLAQSPQL-----HKQMSIC-GD 295 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~~~~~~~~L~~Spql-----~lq~li~-~g 295 (417)
.+++..|.+.+++.+.+.||.||.||.|..... ++ ..+.|.++--+..++|+-...- |...... ..
T Consensus 30 ~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~ 109 (298)
T cd00771 30 AIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRD 109 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccchhh
Confidence 567899999999999999999999999976431 11 1236776544567888743322 2221111 13
Q ss_pred CC-ceEEEeeccccCCCCCcc---cccccccceeeec
Q 014856 296 FG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEME 328 (417)
Q Consensus 296 ~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a 328 (417)
+. |+|++|+|||+|.+.+.+ =.-||+|.|.++-
T Consensus 110 LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~ 146 (298)
T cd00771 110 LPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF 146 (298)
T ss_pred CCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE
Confidence 33 999999999999863211 1259999999875
No 63
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.94 E-value=6.4e-05 Score=73.68 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=76.9
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC-----C-cceeeeccCC-----CceeeccCHHH-----HHHH
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----G-SAVFRLDYKG-----QSACLAQSPQL-----HKQM 290 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----g-a~~F~v~~~~-----~~~~L~~Spql-----~lq~ 290 (417)
.+++..|.+.+++.+.+.||.||.||.|..... .| + .+.|.+.--+ ..++|+-..+- |...
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 457899999999999999999999999987432 11 1 2345553222 67889855543 2222
Q ss_pred hhc-ccCC-ceEEEeeccccCCCCCcc---cccccccceeeechhccHHHHHHHHHHHH
Q 014856 291 SIC-GDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 291 li~-~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
... ..+. |+|++++|||.|.. +.+ =.-||+|.|.+..+.+ .++..+.++.++
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~-~e~a~~e~~~~~ 168 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHAD-AEEADEEFLNML 168 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCC-HHHHHHHHHHHH
Confidence 211 1333 99999999999953 312 2359999999876565 567666666666
No 64
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.90 E-value=8.6e-05 Score=80.30 Aligned_cols=123 Identities=21% Similarity=0.236 Sum_probs=83.1
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C------CCcceeee-ccCCCceeeccCH-----HHHHHHhhc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E------GGSAVFRL-DYKGQSACLAQSP-----QLHKQMSIC 293 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e------gga~~F~v-~~~~~~~~L~~Sp-----ql~lq~li~ 293 (417)
.-++++..|.+.+|+.|...||.||.||.|.+... + -|.+.|.+ +--+..++|+-.. .++......
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~s 124 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKS 124 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 34678999999999999999999999999987421 1 13457877 3456788998642 233332221
Q ss_pred -ccCC-ceEEEeeccccCC-CCCc-ccccccccceeeechhccHHHHHHHHHHHH---HHHhHHh
Q 014856 294 -GDFG-RVFETGPVFRAED-SYTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDCLF---VTIFDSL 351 (417)
Q Consensus 294 -~g~~-rVfeIgp~FR~E~-s~t~-rHl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 351 (417)
..+. |+|+|+++||.|. ..-. -=.-||+|.|.|.-..+ ..++....+.|+ ..+|+.+
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~-~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSD-EESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence 1343 9999999999993 2111 02359999999997764 455555555443 5566655
No 65
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=97.89 E-value=4.7e-05 Score=80.41 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=39.8
Q ss_pred CCceEEEeeccccCCCCCcccccccccceeeechhc-cHHHHHHHHHHHHHHH
Q 014856 296 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVTI 347 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 347 (417)
--|+|.||+|||+|.. +.+|++||+|+|..+...+ ...+|+.++.+++..+
T Consensus 357 P~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 357 PKKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI 408 (494)
T ss_pred CceEEecCCEecCCCC-CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 3599999999999995 8999999999999876643 2456666666655554
No 66
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.88 E-value=4.9e-05 Score=74.02 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=75.2
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C-C-----Ccceeeec-cCCCceeeccCH-----HHHHHHhhc-c
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRLD-YKGQSACLAQSP-----QLHKQMSIC-G 294 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~v~-~~~~~~~L~~Sp-----ql~lq~li~-~ 294 (417)
.+++..|.+.+++.|...||.||.||.|..... . | +.+.|.+. --+..++|+... .++...... .
T Consensus 31 ~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~ 110 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSYK 110 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccHh
Confidence 568899999999999999999999999976321 1 1 23357663 345788998652 233332211 1
Q ss_pred cCC-ceEEEeeccccCCCCCcc--cccccccceeeechhccHHHHHHHHHHHH
Q 014856 295 DFG-RVFETGPVFRAEDSYTHR--HLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 295 g~~-rVfeIgp~FR~E~s~t~r--Hl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
.+. |+|++|+|||+|.....- =.-||+|+|.+....+ -.+.....++++
T Consensus 111 ~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~-~~~a~~~~~~i~ 162 (255)
T cd00779 111 QLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDID-EESLEETYEKMY 162 (255)
T ss_pred hCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCC-HHHHHHHHHHHH
Confidence 343 999999999999421110 2459999999987764 345555444443
No 67
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.86 E-value=5.5e-05 Score=79.60 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=40.0
Q ss_pred CceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 297 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 297 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
-|+|.||+|||+|.. |.+|+|||.|+|--+... =++.+++.++..++..+
T Consensus 343 ~k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 343 KRYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred cEEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 499999999999995 899999999999654431 13778888877777665
No 68
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.86 E-value=6.8e-05 Score=75.11 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=80.7
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC---Ccceeee-ccCCCceeec--cCHHHHHHHhhcc--c--
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG---GSAVFRL-DYKGQSACLA--QSPQLHKQMSICG--D-- 295 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg---ga~~F~v-~~~~~~~~L~--~Spql~lq~li~~--g-- 295 (417)
-.+++..|...+++.|.+.||.+|.||++..... .+ ..+.|.+ +--|..+.|| ..|++-.- +... +
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~-~~~~~~~~~ 85 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARA-VSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHH-HHHhcccCC
Confidence 3567899999999999999999999999876422 11 2235655 3357788888 35554442 2211 2
Q ss_pred -CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 296 -FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 296 -~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
--|+|++|+|||.|.. ...+.-||+|+++|+-..++. -|++.++-+.+..
T Consensus 86 ~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred CCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 3599999999999996 455788999999997554322 3666666666544
No 69
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.85 E-value=0.0001 Score=79.74 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=80.2
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C------CCcceeee-ccCCCceeeccCHH-----HHHHHhhc-
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E------GGSAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC- 293 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e------gga~~F~v-~~~~~~~~L~~Spq-----l~lq~li~- 293 (417)
-++++..|.+.+|+.|.+.||.||.||.|..... . -+.+.|.+ +-.++.++|+-..+ ++...+..
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~ 125 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSY 125 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhhc
Confidence 4668999999999999999999999999986421 1 13457776 44578899985333 23332221
Q ss_pred ccC-CceEEEeeccccCCC-CCc-ccccccccceeeechhccHHHHHHHHHHHH---HHHhHHh
Q 014856 294 GDF-GRVFETGPVFRAEDS-YTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDCLF---VTIFDSL 351 (417)
Q Consensus 294 ~g~-~rVfeIgp~FR~E~s-~t~-rHl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 351 (417)
..+ -|.|+|+++||.|.. ... -=.-||+|.|.|....+ -.+.....+.++ ..+++.+
T Consensus 126 ~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~-~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 126 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHAD-EESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred ccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence 122 389999999999942 111 02359999999997754 334333344444 4555544
No 70
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.81 E-value=0.00014 Score=72.19 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=78.2
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC------CCCcceeee-ccCCCceeec--cCHHHHHHHhh---ccc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLA--QSPQLHKQMSI---CGD 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~--~Spql~lq~li---~~g 295 (417)
.-.+.+..|.+.+++.|...||.+|.||++..... +...+.|.+ +--|..+.|| ..+++-.-.+. ...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a~~~~~~~ 87 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVARNLNLPR 87 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHHHCCGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHHHhcCcCC
Confidence 34678899999999999999999999999976431 112245655 3466777777 33444433222 233
Q ss_pred CCceEEEeeccccCCCCCcccccccccceeeechhccHH---HHHHHHHHHHH
Q 014856 296 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDCLFV 345 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~ 345 (417)
.-|+|.+|+|||.+.. ...+.-||+|+.+|.-..++.. |++.++-+++.
T Consensus 88 ~~r~~y~g~vfR~~~~-~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 88 PKRYYYIGPVFRYERP-GKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SEEEEEEEEEEEEETT-TTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeecccc-CCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999975 3446689999999986654443 77777777775
No 71
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00011 Score=73.97 Aligned_cols=112 Identities=16% Similarity=0.292 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCC----------Cc----ceeeeccCCCc---eeec--cCHHHHHHHhhcc
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEG----------GS----AVFRLDYKGQS---ACLA--QSPQLHKQMSICG 294 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~eg----------ga----~~F~v~~~~~~---~~L~--~Spql~lq~li~~ 294 (417)
..++..++++|.+.||.++..|-+.. .--. -| +.| |++.. .-|| +||=--..|.--.
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTF---y~~~~~~~~lLRTHTs~vq~R~l~~~~ 189 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTF---YLKDDREKLLLRTHTSPVQARTLAENA 189 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceE---EEcCCCCceeecccCcHhhHHHHHhCC
Confidence 45678899999999999999995532 2111 01 123 33322 3555 4553333322111
Q ss_pred c-CCceEEEeeccccCCCCCccccccccccee-eechhccHHHHHHHHHHHHHHHhHH
Q 014856 295 D-FGRVFETGPVFRAEDSYTHRHLCEFTGLDV-EMEIKKHYSEVMDIVDCLFVTIFDS 350 (417)
Q Consensus 295 g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~-e~a~~~~~~d~m~~~e~li~~i~~~ 350 (417)
. =-|+|.+|+|||++.. |.+|+|+|.|+|- .+.-.-++.+|+-+++++++.++..
T Consensus 190 ~~P~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~ 246 (335)
T COG0016 190 KIPIKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGE 246 (335)
T ss_pred CCCceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCC
Confidence 2 5699999999999985 8999999999994 3333224778999999999888853
No 72
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.79 E-value=0.00013 Score=72.17 Aligned_cols=112 Identities=20% Similarity=0.317 Sum_probs=79.5
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCC---CCcceeee-ccCCCceeec--cCHHHHHHHhhc---cc-CCc
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSAVFRL-DYKGQSACLA--QSPQLHKQMSIC---GD-FGR 298 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e---gga~~F~v-~~~~~~~~L~--~Spql~lq~li~---~g-~~r 298 (417)
-.+.+..|.+.+++.|...||-+|.||++--...- ...+.|++ +.-|+.+.|| ..+++-.-.+-- .. --|
T Consensus 18 e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r 97 (281)
T PRK12293 18 SAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRIVTKRLGRSTEHKK 97 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHHHHHhcccCCCcee
Confidence 34578889999999999999999999999653321 12336665 3356777777 445544432110 11 238
Q ss_pred eEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHH
Q 014856 299 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 299 VfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 347 (417)
.|.+|+|||.|. .||+|+.+|+-..++..|++.++-+.+..+
T Consensus 98 ~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 98 WFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred EEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 999999999874 599999999988877777777777666554
No 73
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.77 E-value=5.4e-05 Score=73.70 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=66.9
Q ss_pred HHHHHhHHHHHHHHHhhhCC--cEeecCceeeecCCCCCcceeeec-----cCCCceeeccCHH-----HHHHHhhcc--
Q 014856 229 IFRIQSQVGNIFRQFLLSEN--FVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQSPQ-----LHKQMSICG-- 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~g--F~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~Spq-----l~lq~li~~-- 294 (417)
-.+++..|.+.+|+.|...| |.||.||+|.+. ..|.+. .-+..+||+--.- .++......
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCC
Confidence 35689999999999999885 999999999753 566653 3456788874222 233322222
Q ss_pred cC-CceEEEeeccccCCCCC--cccccccccceeeech
Q 014856 295 DF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEI 329 (417)
Q Consensus 295 g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~ 329 (417)
.+ =|+|+||+|||+|.+.. .-=.-||||+|+|.-.
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~ 142 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV 142 (254)
T ss_pred CCCchhhhhchhhccccCcccceeeeccchhhheeeeE
Confidence 22 38999999999998522 1245799999999744
No 74
>PLN02908 threonyl-tRNA synthetase
Probab=97.76 E-value=0.00011 Score=81.17 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--CC------CcceeeeccCCCceeeccCHHHHHHHhhcc----
Q 014856 227 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG------GSAVFRLDYKGQSACLAQSPQLHKQMSICG---- 294 (417)
Q Consensus 227 ~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--eg------ga~~F~v~~~~~~~~L~~Spql~lq~li~~---- 294 (417)
-.-.+++..|++.+|+.+.+.||.||.||.|..... .+ +.+.|.++--+..++|+--..-..=.+...
T Consensus 318 P~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s 397 (686)
T PLN02908 318 PHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRS 397 (686)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccC
Confidence 355789999999999999999999999999986431 11 123566544467888884433222111111
Q ss_pred --cC-CceEEEeeccccCCCC---CcccccccccceeeechhccHHHHHHHHHHHHHHHh
Q 014856 295 --DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIF 348 (417)
Q Consensus 295 --g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 348 (417)
.+ =|+|++|+|||+|.+. +..=.-||||.|.+. |.. .+++.+.+++++..+.
T Consensus 398 ~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~-~~q~~~e~~~~l~~~~ 455 (686)
T PLN02908 398 YRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCR-EDQIKDEVKGVLDFLD 455 (686)
T ss_pred hhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcC-HHHHHHHHHHHHHHHH
Confidence 12 2899999999999863 323345999999998 664 4677776666655443
No 75
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.75 E-value=0.0001 Score=73.46 Aligned_cols=115 Identities=16% Similarity=0.240 Sum_probs=79.3
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-C--C-----CcceeeeccCCCceeeccCHHHHHHHhhcc-----
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~li~~----- 294 (417)
...+++.+|.+++++.+.+.||.||.||.|..... + | +.+.|.++ +..++|+-..+..+=.+...
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~--~~~~~L~pt~e~~~~~l~~~~~~s~ 127 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEE 127 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--CCCEEEeecCCHHHHHHHhcccCCH
Confidence 45688999999999999999999999999987532 1 1 23466663 36788886666555433322
Q ss_pred -cC-CceEEEeeccccCCC------CCcccccccccceeeechhccHHHHHHHHHHHHHH
Q 014856 295 -DF-GRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 295 -g~-~rVfeIgp~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 346 (417)
.+ =|+|++|+|||+|.+ ...--.-||+|.|.+. |... ++..+..++++..
T Consensus 128 ~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~-e~~~~~~~~~l~~ 185 (297)
T cd00770 128 EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKP-EESWEELEELISN 185 (297)
T ss_pred hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECc-hHHHHHHHHHHHH
Confidence 12 389999999999975 2333456999999974 5432 5555555544443
No 76
>PLN02788 phenylalanine-tRNA synthetase
Probab=97.75 E-value=0.00012 Score=75.62 Aligned_cols=111 Identities=13% Similarity=0.187 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhC---CcEeec--CceeeecC--------C-CCCcceeeeccCCCceeec--cCHHHHHHHhhcccCCce
Q 014856 236 VGNIFRQFLLSE---NFVEIH--TPKLIAGS--------S-EGGSAVFRLDYKGQSACLA--QSPQLHKQMSICGDFGRV 299 (417)
Q Consensus 236 i~~~iR~fl~~~---gF~EV~--TP~l~~~~--------~-egga~~F~v~~~~~~~~L~--~Spql~lq~li~~g~~rV 299 (417)
++..|+++|... ||.+++ .|+-+... . .++-+.--+-|.+...-|| +|+-... +|..+-.|+
T Consensus 73 ~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~--~l~~~~~~~ 150 (402)
T PLN02788 73 LKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAE--LLRAGHTHF 150 (402)
T ss_pred HHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHH--HHHhCCCcE
Confidence 455667777776 999998 55432210 0 1111111123556677777 4442222 233466799
Q ss_pred EEEeeccccCCCCCcccccccccceeeech--------------hccHHHHHHHHHHHHHHHhHH
Q 014856 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEI--------------KKHYSEVMDIVDCLFVTIFDS 350 (417)
Q Consensus 300 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~--------------~~~~~d~m~~~e~li~~i~~~ 350 (417)
+.+|.|||++.. |.+|.|+|.|+|--+.+ .. ..++...++.|+..+|..
T Consensus 151 ~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~-~~dLKg~Le~l~~~lfg~ 213 (402)
T PLN02788 151 LVTGDVYRRDSI-DATHYPVFHQMEGVRVFSPEEWEASGLDGTDLA-AEDLKKTLEGLARHLFGD 213 (402)
T ss_pred EEEeeEeecCCC-CcccCccceeEEEEEEecccccccccccccccC-HHHHHHHHHHHHHHhcCC
Confidence 999999999995 89999999999977664 22 568888888888877654
No 77
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.72 E-value=0.00013 Score=75.28 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=80.7
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C-CC----cceeee-cc-CCCceeec--cCHHHHHHHhhc-cc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GG----SAVFRL-DY-KGQSACLA--QSPQLHKQMSIC-GD 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-gg----a~~F~v-~~-~~~~~~L~--~Spql~lq~li~-~g 295 (417)
.-.+.+..+...+++.|...||.||.||++-.... . +| .+.|.+ +- -|+.+.|| ..+++-.-.+-. .+
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~ 94 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLAN 94 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccC
Confidence 34567899999999999999999999999964321 1 11 225554 33 46778887 455554422111 01
Q ss_pred ---CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHHH
Q 014856 296 ---FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVTI 347 (417)
Q Consensus 296 ---~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~i 347 (417)
--|.|++|+|||.|.. ..-+.-||+|+.+|+-..++. -|++.++-+++..+
T Consensus 95 ~~~p~r~~y~g~vfR~~~~-~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 95 RPGPLRLCYAGNVFRAQER-GLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred CCCCeEEEeeceeeecCCC-cCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 2389999999999985 344678999999998654432 46777777666553
No 78
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.68 E-value=0.00016 Score=78.19 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=68.9
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--CCC------cceeee-ccCCCceeecc-CHHHHHHHhhc---c
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGG------SAVFRL-DYKGQSACLAQ-SPQLHKQMSIC---G 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--egg------a~~F~v-~~~~~~~~L~~-Spql~lq~li~---~ 294 (417)
.-.+++..|.+.+++.+...||.||.||+|..... .+| .+.|.+ +--|+.++|+- +...+..+... +
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s 283 (575)
T PRK12305 204 KGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRS 283 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCC
Confidence 34668999999999999999999999999986431 112 235655 33467888883 22332222211 1
Q ss_pred --cCC-ceEEEeeccccCCCCCc---ccccccccceeeechh
Q 014856 295 --DFG-RVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIK 330 (417)
Q Consensus 295 --g~~-rVfeIgp~FR~E~s~t~---rHl~EFt~lE~e~a~~ 330 (417)
.+. |.|++|+|||+|.+... .=.-||+|+|++. |.
T Consensus 284 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~ 324 (575)
T PRK12305 284 YRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FC 324 (575)
T ss_pred hhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-Ee
Confidence 233 99999999999986321 1235999999996 53
No 79
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.66 E-value=0.00019 Score=77.45 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=74.4
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--CCC------cceeeec-cCCCceeeccCHHHHHHHhhcc-----
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGG------SAVFRLD-YKGQSACLAQSPQLHKQMSICG----- 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--egg------a~~F~v~-~~~~~~~L~~Spql~lq~li~~----- 294 (417)
-.+++..|.+.+|+.+...||.||.||+|..... .+| .+.|.+. --|+.++|+-...-..=++...
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~ 278 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSY 278 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCCh
Confidence 3568899999999999999999999999986431 112 2245542 2357888985443322212211
Q ss_pred -cC-CceEEEeeccccCCCCCc----ccccccccceeeechhc-----cHHHHHHHHHHHHH
Q 014856 295 -DF-GRVFETGPVFRAEDSYTH----RHLCEFTGLDVEMEIKK-----HYSEVMDIVDCLFV 345 (417)
Q Consensus 295 -g~-~rVfeIgp~FR~E~s~t~----rHl~EFt~lE~e~a~~~-----~~~d~m~~~e~li~ 345 (417)
.+ -|+|++|+|||.|.+ +. -=+-||+|.|+|.-... .+.++++++.+++.
T Consensus 279 ~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~ 339 (563)
T TIGR00418 279 RDLPLRIAELGYSHRYEQS-GELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYS 339 (563)
T ss_pred HHCCceeeEeccccCCCCC-cCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 23 399999999999965 31 12349999999975331 02335555555554
No 80
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.62 E-value=0.00033 Score=76.67 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=67.7
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC-----Ccceeee-ccCCCceeeccCH--H---HHHHHhhc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRL-DYKGQSACLAQSP--Q---LHKQMSIC 293 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v-~~~~~~~~L~~Sp--q---l~lq~li~ 293 (417)
.-.+++..|.+.+++.+...||.||.||+|..... .| ..+.|.+ +--|+.+.||--. . +|.+....
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s 347 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRS 347 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCC
Confidence 44668999999999999999999999999976431 12 1235664 3346778887322 2 22221111
Q ss_pred -ccCC-ceEEEeeccccCCCCC---cccccccccceeee
Q 014856 294 -GDFG-RVFETGPVFRAEDSYT---HRHLCEFTGLDVEM 327 (417)
Q Consensus 294 -~g~~-rVfeIgp~FR~E~s~t---~rHl~EFt~lE~e~ 327 (417)
..+. |+|++|+|||.|.+.. ..=.-||||+|++.
T Consensus 348 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~ 386 (638)
T PRK00413 348 YRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHI 386 (638)
T ss_pred hhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEE
Confidence 1233 9999999999998732 11235999999997
No 81
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=97.60 E-value=0.00038 Score=72.62 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=79.9
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecC--C---CCCc----ceeee-ccCCCceeec--cCHHHHHHHhhccc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--S---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICGD 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--~---egga----~~F~v-~~~~~~~~L~--~Spql~lq~li~~g 295 (417)
.-..++..|.+.+++.|...||.||.||+|.... . +++. ..|.+ +--|+.+.|| ..+++-.-.+.-..
T Consensus 16 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~iaR~va~~~~ 95 (423)
T PRK12420 16 EEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFAKVVAMNPN 95 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHHHHHHhCcC
Confidence 3456788999999999999999999999997642 1 1121 25554 3456777777 34444332221112
Q ss_pred --CC-ceEEEeeccccCCCCCcccccccccceeeechhcc---HHHHHHHHHHHHHHH
Q 014856 296 --FG-RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDCLFVTI 347 (417)
Q Consensus 296 --~~-rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~---~~d~m~~~e~li~~i 347 (417)
+. |.|++|+|||.|... .-+.-||+|+.+|+-..++ --|++.++-+.+..+
T Consensus 96 ~~~p~r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 96 IRLPFKRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred CCCCeeEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 23 899999999999853 4467899999999855432 257777776666543
No 82
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.59 E-value=0.00015 Score=76.74 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=80.4
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC------CcceeeeccC-----CCceeeccCHHHHHHH----h
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYK-----GQSACLAQSPQLHKQM----S 291 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~-----~~~~~L~~Spql~lq~----l 291 (417)
++++..|.+.+++-+.+.||.||.||.|..... +| +.+.|.+.-. +.+++|+-..+-..=. .
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~ 117 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKW 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcc
Confidence 456999999999999999999999999977431 23 2346777443 4789998655433221 1
Q ss_pred hcc--cC-CceEEEeeccccCCCCC--cccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 292 ICG--DF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 292 i~~--g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
+.+ .+ -|+|++++|||+|.+.+ .-=.-||+|.|.+..|.+ .++....++.++.
T Consensus 118 i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~-~e~a~~e~~~~l~ 175 (472)
T TIGR00408 118 VKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHAT-AEEAEEQVLRALD 175 (472)
T ss_pred ccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCC-HHHHHHHHHHHHH
Confidence 222 22 28999999999999632 113469999999988875 6676666655553
No 83
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.59 E-value=0.00031 Score=73.30 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=79.9
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-C------C-CcceeeeccCCCceeeccCHHHHHHHhhcc-----
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E------G-GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e------g-ga~~F~v~~~~~~~~L~~Spql~lq~li~~----- 294 (417)
.-.++..+|++++++.+.+.||.||.||.|+.... + + +.+.|.+. +..+||+-..+..+-.+...
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~ 248 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEE 248 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCCh
Confidence 45778999999999999999999999999987542 1 1 23456663 46789987765554433221
Q ss_pred -cC-CceEEEeeccccCCCC------CcccccccccceeeechhccHHHHHHHHHHHHHH
Q 014856 295 -DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 295 -g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 346 (417)
.+ =|+|++|+|||+|.+. +.-=.-||++.|.+ .|.. -++..+..++++..
T Consensus 249 ~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~~~~ 306 (418)
T TIGR00414 249 EELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCK-PEESAEELEEMTSD 306 (418)
T ss_pred HhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcC-HHHHHHHHHHHHHH
Confidence 12 3899999999999631 11123499999994 4654 46666666666554
No 84
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.57 E-value=0.00032 Score=76.93 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC-----cceeeeccCCCceeeccCHHHHHHHhhcc------c
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKGQSACLAQSPQLHKQMSICG------D 295 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~~~~~L~~Spql~lq~li~~------g 295 (417)
.+++..|.+.+++.+.+.||.||.||.|..... .|- .+.|.++--++.++|+-..+-..=.+... +
T Consensus 274 ~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~ 353 (639)
T PRK12444 274 QIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRE 353 (639)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhh
Confidence 345666999999999999999999999987531 121 22453333356777885554333322222 2
Q ss_pred C-CceEEEeeccccCCCCC--c-ccccccccceeeechhccHHHHHHHHHHHH
Q 014856 296 F-GRVFETGPVFRAEDSYT--H-RHLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 296 ~-~rVfeIgp~FR~E~s~t--~-rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
+ -|+|++|+|||.|.+.. . -=.-||+|.|.+ .|.+ -+++...+++++
T Consensus 354 LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~-~~~~~~e~~~~~ 404 (639)
T PRK12444 354 LPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVT-PDQIEDEIKSVM 404 (639)
T ss_pred CCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECC-HHHHHHHHHHHH
Confidence 1 39999999999998632 1 123589999999 5764 344444433333
No 85
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.56 E-value=0.00033 Score=73.34 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=79.2
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C--C-C-----cceeee-ccCCCceeec--cCHHHHHH---Hhh
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E--G-G-----SAVFRL-DYKGQSACLA--QSPQLHKQ---MSI 292 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e--g-g-----a~~F~v-~~~~~~~~L~--~Spql~lq---~li 292 (417)
-...+..|.+.+++.|...||.||.||++-.... . | . .+.|.+ +.-|+.+.|| ..|++..- ...
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~~ 96 (430)
T CHL00201 17 EINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENKM 96 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHccc
Confidence 3557899999999999999999999999876421 1 2 1 235665 3446778888 44444432 111
Q ss_pred c-ccC-CceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 293 C-GDF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 293 ~-~g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
. ... -|.|++|+|||.|.+...|- -||+|+++|+-..++. -|++.++-+.+..
T Consensus 97 ~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~ 154 (430)
T CHL00201 97 DYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEVIHLAMQIFNE 154 (430)
T ss_pred cccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHHHHHHHHHHHH
Confidence 1 123 39999999999998655554 5999999998664432 3566666665544
No 86
>PLN02972 Histidyl-tRNA synthetase
Probab=97.53 E-value=0.00041 Score=76.76 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=80.5
Q ss_pred hHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC------CCCcceeee-ccCCCceeec--cCHHHHHHHhhcc--
Q 014856 226 NQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLA--QSPQLHKQMSICG-- 294 (417)
Q Consensus 226 ~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~--~Spql~lq~li~~-- 294 (417)
.-.-..+|..|...+++.|...||.||.||++-.... +.....|.+ +.-|+.+.|| ..+.+-. +++.
T Consensus 337 lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR--~vA~n~ 414 (763)
T PLN02972 337 AKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFAR--YVAMNG 414 (763)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHH--HHHhCC
Confidence 3455778999999999999999999999999864321 111225654 3456777777 3333332 2221
Q ss_pred -cCCceEEEeeccccCCCCCcccccccccceeeechh-cc---HHHHHHHHHHHHHH
Q 014856 295 -DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KH---YSEVMDIVDCLFVT 346 (417)
Q Consensus 295 -g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~---~~d~m~~~e~li~~ 346 (417)
.--|.|+||+|||.|.. ..-+.-||+||++|+... +. --|++.++-+.+..
T Consensus 415 ~~p~KrYyiG~VFR~e~p-qkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 415 ITSFKRYQIAKVYRRDNP-SKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred CCcceEEEeccEEecCCC-CCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 12478899999999985 344578999999999764 21 14677777776654
No 87
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.53 E-value=0.00043 Score=72.42 Aligned_cols=115 Identities=12% Similarity=0.211 Sum_probs=80.3
Q ss_pred HHHHHHhHHHHHHHHHhh-hCCcEeecCceeeecCC-C--C-----CcceeeeccCCCceeeccCHHHHHHHhhccc---
Q 014856 228 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD--- 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~li~~g--- 295 (417)
...++..+|++++++.+. +.||.||.||.|..... + | +.+.|.+. +.++||.-..+..+=.+....
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s 245 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILD 245 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCC
Confidence 346689999999999998 99999999999987432 1 1 23467664 578899877665553333222
Q ss_pred ---C-CceEEEeeccccCCCC------CcccccccccceeeechhccHHHHHHHHHHHHHH
Q 014856 296 ---F-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 296 ---~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 346 (417)
+ =|+|++++|||.|.+. +.-=.-||+|.|.+ .|.. -++..+..++|+..
T Consensus 246 ~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~l~~ 304 (425)
T PRK05431 246 EEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTK-PEDSYAELEELTAN 304 (425)
T ss_pred HHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEEC-HHHHHHHHHHHHHH
Confidence 1 3899999999999742 11123499999998 5654 46666666666544
No 88
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.0003 Score=75.74 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=77.8
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--CCCc------ceeeeccCCCceeeccCHHHHHHHhhcc-----
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGGS------AVFRLDYKGQSACLAQSPQLHKQMSICG----- 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--egga------~~F~v~~~~~~~~L~~Spql~lq~li~~----- 294 (417)
.-.++|..|...+|+.+.+.||.||.||.|..... .+|- +.|.++--++.++|+--..-..=++...
T Consensus 166 ~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~Sy 245 (545)
T PRK14799 166 KGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245 (545)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccCh
Confidence 45779999999999999999999999999865321 1221 2355444467888884432222222211
Q ss_pred -cC-CceEEEeeccccCCCCCc---ccccccccceeeechhccHHHHHHHHHHHHHHH
Q 014856 295 -DF-GRVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 295 -g~-~rVfeIgp~FR~E~s~t~---rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 347 (417)
.+ =|.|++|+|||.|.+... .=.-||||.|... |+. .+++.+.+.+++..+
T Consensus 246 rdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~-~~q~~~E~~~~l~~i 301 (545)
T PRK14799 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLR-EDQLREEIKMLISKT 301 (545)
T ss_pred hhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeC-HHHHHHHHHHHHHHH
Confidence 22 289999999999997431 2346999999998 765 455545554444433
No 89
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.00022 Score=75.56 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=82.7
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC------CcceeeeccC-----CCceeeccCH-----HHHHH
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYK-----GQSACLAQSP-----QLHKQ 289 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~-----~~~~~L~~Sp-----ql~lq 289 (417)
-++++..|.+.+++.|...||.||.||.|.+... ++ +.+.|.+.-- +.+++|+-.. .+|..
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 4678999999999999999999999999987532 22 2346776432 4678998555 34444
Q ss_pred Hhhc-ccC-CceEEEeeccccCCCCCc--ccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 290 MSIC-GDF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 290 ~li~-~g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
.... .++ =|+|++|+|||.|.+ ++ -=.-||+|.|.+..+.+ .++....++.++.
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~-~eea~~e~~~~l~ 180 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHAT-EEEAEEETLEMLE 180 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCC-HHHHHHHHHHHHH
Confidence 3221 123 389999999999996 43 24569999999988876 6777666665553
No 90
>PLN02530 histidine-tRNA ligase
Probab=97.48 E-value=0.00053 Score=72.92 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=79.3
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCCc----ceeee-ccCCCceeec--cCHHHHHHHhhccc--
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICGD-- 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~--~Spql~lq~li~~g-- 295 (417)
.-.+.+..|...+++.|...||.||.||+|-.... ..|. +.|.+ +.-|+.+.|| ..|++.. +++..
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR--~~~~~~~ 159 (487)
T PLN02530 82 EDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLAR--LVLQKGK 159 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHHHHH--HHHhccc
Confidence 34668999999999999999999999999876321 1122 25654 4456777777 3444432 22211
Q ss_pred ---C-CceEEEeeccccCCCCCcccccccccceeeechhcc---HHHHHHHHHHHHHHH
Q 014856 296 ---F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDCLFVTI 347 (417)
Q Consensus 296 ---~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~---~~d~m~~~e~li~~i 347 (417)
+ -|.|++|+|||.|..... +.-||+|+++|+-..++ --|++.++.+.+..+
T Consensus 160 ~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l 217 (487)
T PLN02530 160 SLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV 217 (487)
T ss_pred ccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc
Confidence 2 389999999999986433 46799999999865432 246676666655543
No 91
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.43 E-value=0.00068 Score=73.96 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=83.8
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecC-------CCC-CcceeeeccCCCceeeccCHHH-----HHHHhhc-
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG-GSAVFRLDYKGQSACLAQSPQL-----HKQMSIC- 293 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~eg-ga~~F~v~~~~~~~~L~~Spql-----~lq~li~- 293 (417)
.-.+++..|.+++++.+.+.||.+|.||.|.... .++ +.+.|.+.--+..++|+-..+. |+.....
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~Sy 304 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISY 304 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCch
Confidence 5678999999999999999999999999884321 122 4557777655678888854442 2222111
Q ss_pred ccC-CceEEEee-ccccCCCCC---cccccccccceeeechhccHHHHHHHHHHHHHHHhH
Q 014856 294 GDF-GRVFETGP-VFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 294 ~g~-~rVfeIgp-~FR~E~s~t---~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 349 (417)
.++ =|+|++|+ |||+|.+.. ..=+-||||.|.+.-.. +.++.++.++.++..+..
T Consensus 305 rdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~-~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 305 KNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK-DMEQAMEEFEKQYEMILE 364 (613)
T ss_pred hhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEEC-CHHHHHHHHHHHHHHHHH
Confidence 012 37999999 999998532 23456999999987544 367888877777766444
No 92
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.42 E-value=0.001 Score=68.83 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=79.5
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCCc----ceeeec-c-CCCceeec--cCHHHHHHHhh--c-c
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRLD-Y-KGQSACLA--QSPQLHKQMSI--C-G 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v~-~-~~~~~~L~--~Spql~lq~li--~-~ 294 (417)
-.+.+..|.+.+++.|...||.||.||++-.... ..|. ..|++. - -|+.+-|| ..+++-.-.+- . .
T Consensus 20 e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~ 99 (392)
T PRK12421 20 EAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNRE 99 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCC
Confidence 3557889999999999999999999999864331 1122 245542 2 25666677 44444431110 1 1
Q ss_pred cCCceEEEeeccccCCCCCcccccccccceeeechhccHH---HHHHHHHHHHHHH
Q 014856 295 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDCLFVTI 347 (417)
Q Consensus 295 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~~i 347 (417)
.--|.|.+|+|||.+.....| .-||+|+.+|+-..++.. |++.++-+.+..+
T Consensus 100 ~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 100 GVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 235999999999998754444 479999999986654433 7788777777554
No 93
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.37 E-value=0.001 Score=69.81 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=76.9
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecC----CC---C-Ccceeee-ccCCCceeeccCH-----HHHHHHhhc-c
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE---G-GSAVFRL-DYKGQSACLAQSP-----QLHKQMSIC-G 294 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~e---g-ga~~F~v-~~~~~~~~L~~Sp-----ql~lq~li~-~ 294 (417)
.+++..|.+.+|+-+...||.||.||.|.... ++ + +.+.|.+ +--+..++|+... .++...... .
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syr 126 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYK 126 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhch
Confidence 67899999999999999999999999998642 11 1 3446776 3456788888522 333332221 1
Q ss_pred cC-CceEEEeeccccCCCC--CcccccccccceeeechhccHHHHHHHHHHHH
Q 014856 295 DF-GRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 295 g~-~rVfeIgp~FR~E~s~--t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
++ =|+|+||++||+|.+. +..=.-||+|-|.|.-..+ .+++.+...+++
T Consensus 127 dLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~-~~~a~~~~~~~~ 178 (439)
T PRK12325 127 DLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLD-EEGARHSYNRMF 178 (439)
T ss_pred hhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCC-HHHHHHHHHHHH
Confidence 23 4899999999999641 1113569999999886554 455555444433
No 94
>PLN02837 threonine-tRNA ligase
Probab=97.29 E-value=0.00084 Score=73.39 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=77.6
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-C-C------Ccceeeecc-CCCceeeccCHH-----HHHHHhhc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-G------GSAVFRLDY-KGQSACLAQSPQ-----LHKQMSIC 293 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-g------ga~~F~v~~-~~~~~~L~~Spq-----l~lq~li~ 293 (417)
.-.+++..|++++++....+||.+|.||.|..... . . +.+.|.+.- -+..+.|+.+.+ +|++....
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~S 324 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHS 324 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCC
Confidence 56789999999999999999999999999986432 1 1 233565522 234456664443 22222111
Q ss_pred -ccC-CceEEEeeccccCCCCC---cccccccccceeeechhccHHHHHHHHHHHHHHH
Q 014856 294 -GDF-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 294 -~g~-~rVfeIgp~FR~E~s~t---~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 347 (417)
.++ -|+|++|+|||+|.+.. ..=.-||+|.|.+. |.. .+++.+.++.++..+
T Consensus 325 yrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~-~~q~~~e~~~~l~~~ 381 (614)
T PLN02837 325 YRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCL-EDQIKDEIRGVLDLT 381 (614)
T ss_pred hhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeC-HHHHHHHHHHHHHHH
Confidence 112 38999999999998521 11245899999996 875 567766666666543
No 95
>PLN02678 seryl-tRNA synthetase
Probab=97.22 E-value=0.00056 Score=71.89 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=69.0
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-CC-------CcceeeeccCCCceeeccC---H--HHHHHHhh-cc
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-------GSAVFRLDYKGQSACLAQS---P--QLHKQMSI-CG 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-------ga~~F~v~~~~~~~~L~~S---p--ql~lq~li-~~ 294 (417)
..+++.+|++++++++..+||.||.||.|..... ++ ....|.+.--+.+.||.-. | -+|....+ -.
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~ 252 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPK 252 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHH
Confidence 4779999999999999999999999999976432 11 1234555322234555432 1 12221111 11
Q ss_pred cC-CceEEEeeccccCCCC---C---cccccccccceeeechhccHHH--HHHHHHHHHH
Q 014856 295 DF-GRVFETGPVFRAEDSY---T---HRHLCEFTGLDVEMEIKKHYSE--VMDIVDCLFV 345 (417)
Q Consensus 295 g~-~rVfeIgp~FR~E~s~---t---~rHl~EFt~lE~e~a~~~~~~d--~m~~~e~li~ 345 (417)
.+ =|++++++|||+|.+. + ..-.-+|+++|... |.. -++ .....|+|+.
T Consensus 253 eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~-pe~~~s~~~~e~~l~ 310 (448)
T PLN02678 253 ELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITS-PNGNESWEMHEEMLK 310 (448)
T ss_pred hCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EEC-CCchhHHHHHHHHHH
Confidence 22 4899999999999852 1 11223899999943 422 223 4444444443
No 96
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.18 E-value=0.0019 Score=66.44 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecCC--C-CCc----ceeee-ccCCCceeec--cCHHHHHHHhh--cccCCceEEE
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS----AVFRL-DYKGQSACLA--QSPQLHKQMSI--CGDFGRVFET 302 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-gga----~~F~v-~~~~~~~~L~--~Spql~lq~li--~~g~~rVfeI 302 (417)
.|.+.+++.|...||.||.||++-.... . .|. ..|.+ +--|+.+.|| ..+++-.-.+- ...--|.|.+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~Y~ 88 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARYAYL 88 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEEEE
Confidence 7888899999999999999999976431 1 122 25654 3346777777 34444332111 1223589999
Q ss_pred eeccccCCCCCcccccccccceeeechh-cc---HHHHHHHHHHHHHH
Q 014856 303 GPVFRAEDSYTHRHLCEFTGLDVEMEIK-KH---YSEVMDIVDCLFVT 346 (417)
Q Consensus 303 gp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~---~~d~m~~~e~li~~ 346 (417)
|+|||.+.. ..-||+|+.+|+-.. +. --|++.++-+.+..
T Consensus 89 g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 89 GEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred ccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 999999832 346999999998663 21 23788888777754
No 97
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=96.86 E-value=0.0097 Score=45.83 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=40.8
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEe
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 175 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vl 175 (417)
+++.+||++.. +.+..+...|..|++|.|.|.+.... .++++|.+.++++|
T Consensus 25 ~tg~i~~~~~~------~~~~~~~~~l~~g~~v~v~G~v~~~~------~~~~~l~~~~i~~l 75 (75)
T PF01336_consen 25 GTGSIQVVFFN------EEYERFREKLKEGDIVRVRGKVKRYN------GGELELIVPKIEIL 75 (75)
T ss_dssp TTEEEEEEEET------HHHHHHHHTS-TTSEEEEEEEEEEET------TSSEEEEEEEEEEE
T ss_pred CCccEEEEEcc------HHhhHHhhcCCCCeEEEEEEEEEEEC------CccEEEEECEEEEC
Confidence 67899999984 45677889999999999999998642 12599999999876
No 98
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0055 Score=64.10 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=78.9
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCC---CCcc-------eeee-ccCCCceeec---cCHH--HHHHHhh
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSA-------VFRL-DYKGQSACLA---QSPQ--LHKQMSI 292 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e---gga~-------~F~v-~~~~~~~~L~---~Spq--l~lq~li 292 (417)
=...+..|...+|+-+..-||.||.||++-....= .|.+ .|.. |--|+.+-|| ++|= ++.+-..
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 35678899999999999999999999987653211 1211 2332 2246777777 4442 2222211
Q ss_pred -cccCCceEEEeeccccCCCCCcccccccccceeeechhcc---HHHHHHHHHHHHHH
Q 014856 293 -CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDCLFVT 346 (417)
Q Consensus 293 -~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~---~~d~m~~~e~li~~ 346 (417)
..---|.|.+|||||.|.....|- =||+||++|.-..++ --|++.++.+++..
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHH
Confidence 112349999999999999866665 699999999876542 14777777777654
No 99
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0026 Score=64.24 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=44.1
Q ss_pred HHHHHHhhcccC--CceEEEeeccccCCCCCcccccccccceeeechhc-cHHHHHHHHHHHHHH
Q 014856 285 QLHKQMSICGDF--GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVT 346 (417)
Q Consensus 285 ql~lq~li~~g~--~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~ 346 (417)
.||.- .-.|| .|.|.|-+|||||-. |.+||+||.++|=-++... .+-|+|-++++++..
T Consensus 322 mLy~L--Ak~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 322 MLYRL--AKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred HHHHH--HhCCCCcccccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhc
Confidence 55542 23456 589999999999996 8999999999997666421 267888877776654
No 100
>PLN02320 seryl-tRNA synthetase
Probab=96.57 E-value=0.0032 Score=66.88 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=73.5
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-CC-Cc-------ceeeeccCCCceeeccCHH-----HHHHHhhc-c
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-GS-------AVFRLDYKGQSACLAQSPQ-----LHKQMSIC-G 294 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-ga-------~~F~v~~~~~~~~L~~Spq-----l~lq~li~-~ 294 (417)
.++..++++++++++..+||.||.||.|..... +| |- .+|.++ +.++||.-..| +|....+. .
T Consensus 233 a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~ 310 (502)
T PLN02320 233 VLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLES 310 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHh
Confidence 446788999999999999999999999987542 22 21 123332 45677732221 33332221 1
Q ss_pred cC-CceEEEeeccccCCCCCc------ccccccccceeeechhccHHHHHHHHHHHHHHHhH
Q 014856 295 DF-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 295 g~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 349 (417)
.+ =|++++|+|||.|.+... --.-+|+..|... |.. -++..+..++|+..+..
T Consensus 311 dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~-peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 311 ALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICR-PEESESFHEELIQIEED 370 (502)
T ss_pred hCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EEC-HHHHHHHHHHHHHHHHH
Confidence 22 489999999999965111 1223799999865 443 56777777777665433
No 101
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.49 E-value=0.0073 Score=63.83 Aligned_cols=31 Identities=13% Similarity=0.394 Sum_probs=27.5
Q ss_pred HHHHhHHHHHHHHHhhh--CCcEeecCceeeec
Q 014856 230 FRIQSQVGNIFRQFLLS--ENFVEIHTPKLIAG 260 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~--~gF~EV~TP~l~~~ 260 (417)
.++|..|.+++|+.+.. .||.||.||+|.+.
T Consensus 38 ~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~ 70 (456)
T PRK04173 38 VELKNNIKRAWWKSFVQEREDVVGIDSPIIMPP 70 (456)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEeccccCCH
Confidence 46899999999999987 79999999998764
No 102
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.44 E-value=0.026 Score=55.71 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=64.6
Q ss_pred HHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--CCCcc----eee-e-ccCCCceeec--cCHHHHHHHhh-ccc
Q 014856 227 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGGSA----VFR-L-DYKGQSACLA--QSPQLHKQMSI-CGD 295 (417)
Q Consensus 227 ~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--egga~----~F~-v-~~~~~~~~L~--~Spql~lq~li-~~g 295 (417)
+.-+..+..|.+.+++.|...||-+|.||++-.... .++.. .|. + +.-|+.+-|| ..|++-.-.+. ..+
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~~ 83 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPTA 83 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCCC
Confidence 344556778889999999999999999999954322 12211 122 2 2246778888 55666552111 024
Q ss_pred CCceEEEeeccccCCCCCcccccccccceeeech
Q 014856 296 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 329 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~ 329 (417)
..|.|.+|+|||++. +|+|+.+|.-.
T Consensus 84 ~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG 109 (272)
T PRK12294 84 ATKVAYAGLIIRNNE--------AAVQVGIENYA 109 (272)
T ss_pred CceEEEeccEeccCC--------CcceeceEEEC
Confidence 569999999999874 38999999876
No 103
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.0099 Score=63.27 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=85.8
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecC-------CCC-Ccceeeecc-CCCceeeccCHHHHHHHhh----cc-
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG-GSAVFRLDY-KGQSACLAQSPQLHKQMSI----CG- 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~eg-ga~~F~v~~-~~~~~~L~~Spql~lq~li----~~- 294 (417)
-+|++..|.+.+|+.|++-|..||.-|+|+++. .+| |.++|.+.- -++++.|+-..|--.--++ -+
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SY 125 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSY 125 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhh
Confidence 478999999999999999999999999999842 133 566787744 5789999866653222111 11
Q ss_pred -cC-CceEEEeeccccCCC--CCcccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 295 -DF-GRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 295 -g~-~rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
+| =++|+|..+||.|-- ..---.-||+|=|.|-.+.+ .+++....+.++.
T Consensus 126 kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~-~e~a~~~y~~~~~ 179 (500)
T COG0442 126 KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHAD-EEDAEETYEKMLD 179 (500)
T ss_pred hhCCcceeeeeeEEeccccCCCCccchheeeecccccccCC-HHHHHHHHHHHHH
Confidence 22 379999999999972 11223579999999999986 8888887777664
No 104
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.22 E-value=0.0057 Score=64.17 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=44.0
Q ss_pred CCceEEEeeccccCCCCCcccccccccceeeechhc-cHHHHHHHHHHHHHHH
Q 014856 296 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVTI 347 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 347 (417)
=-|+|+||+|||+|...+.+|+++|.++|.-++..+ ++.|++.+++.|++.+
T Consensus 207 PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 207 PLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred CeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 359999999999996457799999999998766532 3799999999999887
No 105
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=95.85 E-value=0.041 Score=58.60 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=77.0
Q ss_pred HHHHHHhHHHHHHHHHh-hhCCcEeecCceeeecCCC-------CCc-ceeeeccC------------------------
Q 014856 228 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGSSE-------GGS-AVFRLDYK------------------------ 274 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl-~~~gF~EV~TP~l~~~~~e-------gga-~~F~v~~~------------------------ 274 (417)
..+++..++.+.+.+++ .+.||.||.+|.|++...- |-. +.|.|..-
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 45668888999997666 4569999999999985421 111 13434110
Q ss_pred -----C-CceeeccCHHHHHHHhhc------ccC-CceEEEe-eccccCCC--CCcccccccccceeeechhccHHHHHH
Q 014856 275 -----G-QSACLAQSPQLHKQMSIC------GDF-GRVFETG-PVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 338 (417)
Q Consensus 275 -----~-~~~~L~~Spql~lq~li~------~g~-~rVfeIg-p~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~ 338 (417)
. ..++|+-+.+..+=.+.. .++ -|+|++. +|||.|.. +...=+-||+|.|.-. +.+ .++..+
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~t-pEea~e 378 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAE-PEETEE 378 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeC-HHHHHH
Confidence 1 156788777665533322 233 3788845 79999983 3333455999999987 765 788888
Q ss_pred HHHHHHHH
Q 014856 339 IVDCLFVT 346 (417)
Q Consensus 339 ~~e~li~~ 346 (417)
..++++..
T Consensus 379 ~~e~mle~ 386 (520)
T TIGR00415 379 IRDKTLEL 386 (520)
T ss_pred HHHHHHHH
Confidence 88887754
No 106
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.69 E-value=0.016 Score=62.00 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=71.7
Q ss_pred HHHHHHhHHHHHHHHHh-hhCCcEeecCceeeecCC---CC----C-cceeeeccCC--C------ceee----------
Q 014856 228 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGSS---EG----G-SAVFRLDYKG--Q------SACL---------- 280 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl-~~~gF~EV~TP~l~~~~~---eg----g-a~~F~v~~~~--~------~~~L---------- 280 (417)
.-.++...+.+++++.+ ...||.||.||.|.+... .| - .+.|.+.-++ . ..||
T Consensus 221 ~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 221 PMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred hHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 45678889999998874 566999999999987432 11 0 1245443111 0 0222
Q ss_pred ------------c--cCHHHH---HHHhhcccCC---ceEE-EeeccccCC--CCCcccccccccceeeechhccHHHHH
Q 014856 281 ------------A--QSPQLH---KQMSICGDFG---RVFE-TGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVM 337 (417)
Q Consensus 281 ------------~--~Spql~---lq~li~~g~~---rVfe-Igp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m 337 (417)
+ +-|-+| ... +...-+ |+|+ .|+|||+|. .++..=.-||+|.|.- .|.. .+++.
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~-ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~t-pEqs~ 377 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGE-TVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGT-PEQVE 377 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCC-cCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeC-HHHHH
Confidence 2 112222 221 122223 7899 669999996 2233334599999998 5765 78888
Q ss_pred HHHHHHHHH
Q 014856 338 DIVDCLFVT 346 (417)
Q Consensus 338 ~~~e~li~~ 346 (417)
+..++++.+
T Consensus 378 ee~e~ll~~ 386 (517)
T PRK00960 378 EIRDELLKY 386 (517)
T ss_pred HHHHHHHHH
Confidence 888888844
No 107
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.037 Score=57.84 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=70.5
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcc---eeeeccC---CCceeeccCHHHHHHHhh-----c-cc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA---VFRLDYK---GQSACLAQSPQLHKQMSI-----C-GD 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~---~F~v~~~---~~~~~L~~Spql~lq~li-----~-~g 295 (417)
.+.++--++++++=++..++||.|+.+|.|+...+.-|.. -|.=+.| +..+||.-..+.-+--+. - ..
T Consensus 172 ~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~ 251 (429)
T COG0172 172 KGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEED 251 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhccccccccc
Confidence 3456677788888888899999999999999755432222 1322222 226788766654443322 2 22
Q ss_pred C-CceEEEeeccccCCCC------C--cccccccccceeeechhccHHHHHHHHHHHHHH
Q 014856 296 F-GRVFETGPVFRAEDSY------T--HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 296 ~-~rVfeIgp~FR~E~s~------t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 346 (417)
+ -+.+-.+||||.|... + +.| +|..+|.-. |.. -++-....|+|+..
T Consensus 252 LP~k~~~~S~cFR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~-Pe~S~~~~E~m~~~ 307 (429)
T COG0172 252 LPIKYTAYSPCFRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITK-PEESEEELEEMLGN 307 (429)
T ss_pred CCeeeEEEChhhhcccccccccccceeeee--eeeeEEEEE-EeC-cchhHHHHHHHHHH
Confidence 2 3667789999999642 1 235 899998632 332 44555555555543
No 108
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.077 Score=56.39 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHHHhhh--CCcEeecCceeeec
Q 014856 231 RIQSQVGNIFRQFLLS--ENFVEIHTPKLIAG 260 (417)
Q Consensus 231 ~~rs~i~~~iR~fl~~--~gF~EV~TP~l~~~ 260 (417)
.++..|.++.|++|-. .+++||+||+|.+.
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~ 72 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILPE 72 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCcH
Confidence 4788899999999965 58999999999874
No 109
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.52 E-value=0.1 Score=53.01 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=75.4
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecC----C---C-CCcceeee-ccCCCceeeccCHHHHHHHhhcccCC---
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRL-DYKGQSACLAQSPQLHKQMSICGDFG--- 297 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~v-~~~~~~~~L~~Spql~lq~li~~g~~--- 297 (417)
.|...++++.++.-|++-|=.+|.-|+|.+.. + + -|++.|.+ |--|+.++|+-.-|=-.-.+|+.-..
T Consensus 52 ~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~lsy 131 (457)
T KOG2324|consen 52 LRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLSY 131 (457)
T ss_pred HHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCcccc
Confidence 56778999999999999999999999997642 1 2 26788988 44678888876655444434433222
Q ss_pred -----ceEEEeeccccCCC--CCcccccccccceeeechhccHHHHHH
Q 014856 298 -----RVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 338 (417)
Q Consensus 298 -----rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~ 338 (417)
+||+||+-||+|-- .+.----||.|=|.|- |..+-+..|.
T Consensus 132 kqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYs-Fd~~~etA~q 178 (457)
T KOG2324|consen 132 KQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYS-FDSDEETAQQ 178 (457)
T ss_pred ccCcEEeeeechhhhhccCccccchhhHHHHHhhhhc-ccCCHHHHHH
Confidence 79999999999951 0111225999999986 4444444444
No 110
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.44 E-value=0.19 Score=54.41 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecC--CC----CCc-ceeee-cc-CCCceeeccC--HHHHHHHhhc-ccC--Cce
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGS--SE----GGS-AVFRL-DY-KGQSACLAQS--PQLHKQMSIC-GDF--GRV 299 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~--~e----gga-~~F~v-~~-~~~~~~L~~S--pql~lq~li~-~g~--~rV 299 (417)
..+.+.+|++|...||.|+-|..+++.. .+ ... ....+ |- -....+||.| |.|..-..-- .+. -|+
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~l 441 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKI 441 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeE
Confidence 3456678999999999999999998641 11 011 12333 22 2345677766 4444432210 111 389
Q ss_pred EEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVT 346 (417)
Q Consensus 300 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~ 346 (417)
||||+||+.+.. +..|..|++++-+-++.. -++.++...++.++..
T Consensus 442 FEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 442 FEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred EEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999999998752 345778999998877662 1478888888888764
No 111
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.096 Score=56.96 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=70.1
Q ss_pred HHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC-----cceeeeccCCCceeeccCH-----HHHHHHhhcc-c-
Q 014856 231 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKGQSACLAQSP-----QLHKQMSICG-D- 295 (417)
Q Consensus 231 ~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~~~~~L~~Sp-----ql~lq~li~~-g- 295 (417)
.+|..+.+++|.-....||.||.||.|..... .|- .+.|.+..-++.+.|+--. ++|+..+.+- .
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~L 300 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYREL 300 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceecc
Confidence 58999999999999999999999999865321 121 1123222222333333221 2344332210 1
Q ss_pred CCceEEEeeccccCCCC---CcccccccccceeeechhccHHHHHHHHHHHHHHHhH
Q 014856 296 FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 349 (417)
--|.+|+|.|||.|.|. +.+=+-.|||=|.-+ |+. .+.+.+.+.+.+..+..
T Consensus 301 P~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~-~dQi~~E~~~~~~~i~~ 355 (589)
T COG0441 301 PLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCT-PDQIKDEFKGILELILE 355 (589)
T ss_pred chhhhhcceeecccCcchhhccccccceeecccce-ecc-HHHHHHHHHHHHHHHHH
Confidence 13899999999999862 233457899988754 443 45555555555544433
No 112
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=93.05 E-value=0.14 Score=55.27 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.0
Q ss_pred HHHHhHHHHHHHHHh-hhCCcEeecCceeeec
Q 014856 230 FRIQSQVGNIFRQFL-LSENFVEIHTPKLIAG 260 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl-~~~gF~EV~TP~l~~~ 260 (417)
..++..|.+..|++| ...|++||.||+|++.
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 458899999999988 4789999999999874
No 113
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=92.48 E-value=0.55 Score=49.60 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=36.2
Q ss_pred ccCCCceeec--cCHHHHHHHhhcccCC-------ceEEEeeccccCCCCCcccccccccce
Q 014856 272 DYKGQSACLA--QSPQLHKQMSICGDFG-------RVFETGPVFRAEDSYTHRHLCEFTGLD 324 (417)
Q Consensus 272 ~~~~~~~~L~--~Spql~lq~li~~g~~-------rVfeIgp~FR~E~s~t~rHl~EFt~lE 324 (417)
-|++....|| +|+-.- .+|-.+.+ ++...|.|||.+.. |.+|.|-|.|+|
T Consensus 102 ~Yi~~~~lLRTHTSa~q~--~~~~~~~~~~~~~~~~~i~~G~VYRrD~i-DatH~p~FHQ~E 160 (460)
T TIGR00469 102 YYINEQHLLRAHTSAHEL--ECFQGGLDDSDNIKSGFLISADVYRRDEI-DKTHYPVFHQAD 160 (460)
T ss_pred eEecCCceeCCCCcHHHH--HHHHhccccCCCcceeeEeecceeeCCCC-ccccCccceeeE
Confidence 3667778887 455222 22333442 48899999999995 899999999999
No 114
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.44 E-value=0.47 Score=49.42 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=63.9
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C-CCcceeeecc-----CCCc----eeeccCHHHHHHHhhccc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGSAVFRLDY-----KGQS----ACLAQSPQLHKQMSICGD 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-gga~~F~v~~-----~~~~----~~L~~Spql~lq~li~~g 295 (417)
.-+.+|..|.+.|.+-|...|...|.||++---.. + -|-+. ++-| -|.- +=|+++=-=|+-|-=+..
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~s 150 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITS 150 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHHHHHHHHccccc
Confidence 44778999999999999999999999998532110 0 02221 2212 1222 234444444544322222
Q ss_pred CCceEEEeeccccCC-CCCcccccccccceeeech
Q 014856 296 FGRVFETGPVFRAED-SYTHRHLCEFTGLDVEMEI 329 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~-s~t~rHl~EFt~lE~e~a~ 329 (417)
+ +-|.||++||-.. ..|.--.-||.||||-+|.
T Consensus 151 i-kRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 151 I-KRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred c-eeeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 3 4599999999765 3355566799999999987
No 115
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=92.03 E-value=0.4 Score=44.69 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecC-CC----CCcceeee-cc-CCCceeeccC--HHHHHHHhh--ccc--CCceEE
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGS-SE----GGSAVFRL-DY-KGQSACLAQS--PQLHKQMSI--CGD--FGRVFE 301 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~-~e----gga~~F~v-~~-~~~~~~L~~S--pql~lq~li--~~g--~~rVfe 301 (417)
.+.+.+|++|...||.||-|..+++.. .+ +...+.++ |- -..--+||.| |.|..-..- ..+ --|+||
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFE 83 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFE 83 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence 456678999999999999999997641 11 11122333 11 2334456655 344332211 122 238999
Q ss_pred EeeccccCCCCCcccccccccceeeechh------------ccHHHHHHHHHHHHHHH
Q 014856 302 TGPVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 302 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 347 (417)
||+||..... +..|.+++=+-++.. .++.|+-..++.++..+
T Consensus 84 iG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 84 IGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred eEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 9999976431 223454443333331 14677777777777543
No 116
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=91.36 E-value=0.57 Score=48.58 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=76.2
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCCc----ceeee-ccCCCceeec--cCHHHHHHHh--hcccCC
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMS--ICGDFG 297 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~--~Spql~lq~l--i~~g~~ 297 (417)
.+....|.+.++..|...||..|.||+|....+ +.|+ ..|++ +-.|..++|| ..+++-..-. +.+.-.
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~~~~~~~P~ 96 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIHATLLAGTPL 96 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHHHHhcCCCCc
Confidence 345677888888999999999999999987653 2222 26876 4567778888 4444433311 233568
Q ss_pred ceEEEeeccccCCCCCcccccccccceeeechhcc---HHHHHHHHHHHHH
Q 014856 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDCLFV 345 (417)
Q Consensus 298 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~---~~d~m~~~e~li~ 345 (417)
|++..|+|||+... -+.-..||+|.-+|+=+.+. --+++.++-..++
T Consensus 97 Rl~Y~G~Vfr~~~~-~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~ 146 (390)
T COG3705 97 RLSYAGKVFRAREG-RHGRRAEFLQAGIELLGDDSAAADAEVIALALAALK 146 (390)
T ss_pred eeeecchhhhcchh-ccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHH
Confidence 99999999998732 23334599999888754321 1345555544443
No 117
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=87.73 E-value=11 Score=36.47 Aligned_cols=119 Identities=14% Similarity=0.224 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhh-----hCCcEeecCceeeecCCC-----CCcc---eeeeccC-CCceeeccCHHHHHHHhhc-ccC--
Q 014856 234 SQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF-- 296 (417)
Q Consensus 234 s~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~li~-~g~-- 296 (417)
...|..++++|. +.+.+.|..|+++...++ +|.+ .|.+.-+ +..+-.-+|=--||.+++. -||
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~ 86 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPP 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCC
Confidence 445566666663 469999999999875432 2443 3666555 7788888999999999874 244
Q ss_pred -CceEEEeeccc-cCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhh
Q 014856 297 -GRVFETGPVFR-AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNN 353 (417)
Q Consensus 297 -~rVfeIgp~FR-~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~ 353 (417)
+.+|+=....| .|..-+..|.-=.-|-|||+.... -+-.++.+.+.+..|+..+..
T Consensus 87 geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~-~~Rnl~~Lk~tV~~Iy~aik~ 144 (244)
T PF03590_consen 87 GEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISK-EDRNLEFLKETVRKIYKAIKE 144 (244)
T ss_dssp T-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--T-T--SHHHHHHHHHHHHHHHHH
T ss_pred CceEeecCceeecchhccCcceEEEecccCHhhhcCc-ccccHHHHHHHHHHHHHHHHH
Confidence 68999999999 887568899989999999999875 456677777777777777653
No 118
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.31 E-value=1.4 Score=46.00 Aligned_cols=118 Identities=11% Similarity=0.161 Sum_probs=65.1
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--------CCCcceeeeccCCCceeeccCHHHHHHHh-----hcc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQLHKQMS-----ICG 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--------egga~~F~v~~~~~~~~L~~Spql~lq~l-----i~~ 294 (417)
....+..+++++.-+|+.++||+-+.||.|..... .+.-+.+.+---+...||.-..|.-+--+ +.-
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~ 262 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEE 262 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhccccccc
Confidence 45668889999999999999999999999876431 11111222211123445554444333211 100
Q ss_pred -cC-CceEEEeeccccCCC---CCcc---cccccccceeee------chhccHHHHHHHHHHHHHH
Q 014856 295 -DF-GRVFETGPVFRAEDS---YTHR---HLCEFTGLDVEM------EIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 295 -g~-~rVfeIgp~FR~E~s---~t~r---Hl~EFt~lE~e~------a~~~~~~d~m~~~e~li~~ 346 (417)
.+ -|+--.++|||+|-+ .+.+ -.-+|+-+|.-. +..- +++++...++++..
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~-~eEmi~~~eef~qs 327 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEM-LEEMINNQEEFYQS 327 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHH-HHHHHHHHHHHHHH
Confidence 11 245567899999952 1222 112899998632 1111 44555555555443
No 119
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=84.05 E-value=2.8 Score=49.03 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=70.5
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeec-CCCC-Ccceeee-ccCCC----ceeeccCHHHHHHHhhcccCCceE
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEG-GSAVFRL-DYKGQ----SACLAQSPQLHKQMSICGDFGRVF 300 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~-~~eg-ga~~F~v-~~~~~----~~~L~~Spql~lq~li~~g~~rVf 300 (417)
..-.+|..++..+-+-|..+|++|++||-+... +|-. ..++..+ +.-|. ++=||+---=|.-+--+. .-|-|
T Consensus 930 ~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~~~-~~Kry 1008 (1351)
T KOG1035|consen 930 INNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNSVL-SFKRY 1008 (1351)
T ss_pred hHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhchHH-HHHHh
Confidence 345678899999999999999999999966542 2221 1223322 22221 122222211122111111 23558
Q ss_pred EEeeccccCCCCCcccccccccceeeechhc-c--HHHHHHHHHHHHHHHhHH
Q 014856 301 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-H--YSEVMDIVDCLFVTIFDS 350 (417)
Q Consensus 301 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~--~~d~m~~~e~li~~i~~~ 350 (417)
+|++|||-+.+ . |.-||+.|+|-+-..+ + --|++.++-+++..++.+
T Consensus 1009 ~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 1009 CISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred hhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 99999998883 3 9999999999754321 1 246777777777665443
No 120
>PTZ00213 asparagine synthetase A; Provisional
Probab=79.91 E-value=29 Score=35.36 Aligned_cols=122 Identities=12% Similarity=0.159 Sum_probs=84.2
Q ss_pred HHHHhHHHHHHHHHhh-----hCCcEeecCceeeecCCC-----CCcc---eeeeccC-CCceeeccCHHHHHHHhhc-c
Q 014856 230 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-G 294 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~li~-~ 294 (417)
|+.....|..+++||. +.+.+.|..|.++...++ .|.+ .|.+..+ +..+-.-+|---||.+++. -
T Consensus 8 ~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y 87 (348)
T PTZ00213 8 YIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEH 87 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhc
Confidence 3444455556666653 469999999999865432 1333 3666544 5777788999999999874 2
Q ss_pred cC---CceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhh
Q 014856 295 DF---GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLN 352 (417)
Q Consensus 295 g~---~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 352 (417)
|| +.+|+=.+..|....-+..|.-=--|-|||+.... -+-.++.+.+.++.|+..+.
T Consensus 88 ~f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik 147 (348)
T PTZ00213 88 KFPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAP-ADRNLEYLKNTVRRLYAAIR 147 (348)
T ss_pred CCCCCceeeeccccccCCcccCccceeEeccccHHHhcCc-cccCHHHHHHHHHHHHHHHH
Confidence 34 67899788888654458899877788899988764 45566777777777766665
No 121
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=78.29 E-value=24 Score=30.52 Aligned_cols=59 Identities=8% Similarity=0.061 Sum_probs=38.8
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCcc-CC-CCc-eeEEEEEeEEEEeecC
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IK-GAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-~~-~~t-~~~El~~~~i~vls~~ 178 (417)
+.-+.|++-.+ ......+.|.+|+.|.|+|.+....-. .. |.+ ..+||.+++|.+|++.
T Consensus 43 t~w~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 43 PDWFNLEIWGK------TAQVAADYVKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred ceEEEEEEehH------HHHHHHHHcCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 33467766521 122345679999999999999864221 12 333 3489999999998753
No 122
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=78.06 E-value=1.4 Score=47.66 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=44.7
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.+.+|+. +.|++|.|+|- .++.+++-+..... +.-.-.+..|++|.|+|.|...
T Consensus 203 ~~i~~id~-~ig~tV~I~GeV~qikqT~GPTVFtltDetg~i~aAAFe~aG------vRAyP~IevGdiV~ViG~V~~r- 274 (715)
T COG1107 203 TLIDDLDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGAIWAAAFEEAG------VRAYPEIEVGDIVEVIGEVTRR- 274 (715)
T ss_pred ccHHHHHh-hcCceEEEEEEEEEEEEcCCCEEEEEecCCCceehhhhccCC------cccCCCCCCCceEEEEEEEeec-
Confidence 44666765 99999999997 33344443332111 1112358999999999999653
Q ss_pred ccCCCCceeEEEEEeEEEEee
Q 014856 156 VEIKGATQQVEVQIKKLYCVS 176 (417)
Q Consensus 156 ~~~~~~t~~~El~~~~i~vls 176 (417)
.|.+-|.+..++.|.
T Consensus 275 ------~g~lQiE~~~me~L~ 289 (715)
T COG1107 275 ------DGRLQIEIEAMEKLT 289 (715)
T ss_pred ------CCcEEEeehhhHHhh
Confidence 255667777776654
No 123
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=77.88 E-value=20 Score=36.03 Aligned_cols=107 Identities=14% Similarity=0.240 Sum_probs=76.6
Q ss_pred hhCCcEeecCceeeecCCC-----CCcc---eeeeccC-CCceeeccCHHHHHHHhhcc-cC---CceEEEeeccccCCC
Q 014856 245 LSENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSICG-DF---GRVFETGPVFRAEDS 311 (417)
Q Consensus 245 ~~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~li~~-g~---~rVfeIgp~FR~E~s 311 (417)
.+.+.+.|..|.++...++ .|.+ .|.+..+ +..+-.-+|---||.+++.- || +.+|+=....|....
T Consensus 17 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 96 (309)
T cd00645 17 KELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDED 96 (309)
T ss_pred HHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 3469999999999875443 1333 3666554 57777888999999998842 44 678888888886433
Q ss_pred CCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhh
Q 014856 312 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLN 352 (417)
Q Consensus 312 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 352 (417)
-+..|.-=--|-|||..... -+-.++.+.+.+..|+..+.
T Consensus 97 ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik 136 (309)
T cd00645 97 LDNIHSIYVDQWDWEKVISK-GERNLETLKETVNKIYKAIK 136 (309)
T ss_pred cCccceeEeccccHHhhcCc-cccCHHHHHHHHHHHHHHHH
Confidence 58899877788899988764 45566666777777766665
No 124
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=77.66 E-value=28 Score=29.46 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHcCCCCcEEEEEEEEecCC-ccCCCCce-eEEEEEeEEEEeecC
Q 014856 134 RFVRSLSNESIVDVIGVVSVPD-VEIKGATQ-QVEVQIKKLYCVSRA 178 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~-~~~~~~t~-~~El~~~~i~vls~~ 178 (417)
.+.+.+.+||.|.|+|.+.... ....|.+. .+||.+++|.+|++.
T Consensus 60 ~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 60 NVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred HHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 3566799999999999998642 22234443 489999999998754
No 125
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=77.55 E-value=21 Score=32.67 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=39.8
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~~ 178 (417)
..-|.|++-.+ .....++.|.+|+.|.|+|.+....- ...|.+ ..+||.++.|.+|.+.
T Consensus 46 tdfi~vv~wgk------~Ae~~~~~l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 46 ADFINCVIWRQ------QAENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred eeEEEEEEEcH------HHHHHHHHcCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 34577777632 22234677999999999999975321 223444 3489999999998754
No 126
>PRK07080 hypothetical protein; Validated
Probab=76.76 E-value=3.1 Score=41.92 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=37.6
Q ss_pred ceEEE-eeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHH
Q 014856 298 RVFET-GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 298 rVfeI-gp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 347 (417)
++|.+ |.|||.|+|++.+-+-||+|-|+-+-. + -+.+.+.-+..+...
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t-~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-T-PEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-C-HHHHHHHHHHHHHHH
Confidence 66665 889999999999999999999987755 2 567777766666543
No 127
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=76.52 E-value=8.9 Score=41.67 Aligned_cols=112 Identities=18% Similarity=0.282 Sum_probs=64.0
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecC-C-C--C--Ccceeee-cc-CCCceeeccCH--HHHHHHhhcccC-----C
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGS-S-E--G--GSAVFRL-DY-KGQSACLAQSP--QLHKQMSICGDF-----G 297 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-~-e--g--ga~~F~v-~~-~~~~~~L~~Sp--ql~lq~li~~g~-----~ 297 (417)
...+.+.+|++|...||.|+-|-.+++.. . + + +.....+ |- -...-+||.|- .|-. .+..+. -
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~--~~~~N~~~~~~~ 441 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLE--TLSENKHHELPQ 441 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHH--HHHhcccCCCCe
Confidence 34566778999999999999999998641 1 1 0 0011122 22 12345666653 3333 232222 2
Q ss_pred ceEEEeeccccCCCCCcccccccccceeeech-hccHHHHHHHHHHHHHHH
Q 014856 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI-KKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 298 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~-~~~~~d~m~~~e~li~~i 347 (417)
|+||||+||...+. +..+-.+|.++-+-++. .-++.|+...++.++..+
T Consensus 442 ~lFEiG~Vf~~~~~-~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 442 KIFEIGDVVVKDDK-SETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred eEEEEEEEEEcCCc-cccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 79999999965321 11133334555554543 114888888888887643
No 128
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=75.64 E-value=27 Score=32.32 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=39.0
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCce-eEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t~-~~El~~~~i~vls~~ 178 (417)
-+-|++-. +....+.+.|++|+.|.|+|.+....- ...+.+. .+||.++.|.+|.+.
T Consensus 48 wi~~v~wg------k~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 48 FINCVIWR------KQAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEEeC------cHHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 46666652 223345677999999999999986432 1234443 489999999998754
No 129
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=75.49 E-value=13 Score=30.16 Aligned_cols=56 Identities=20% Similarity=0.132 Sum_probs=33.2
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCC-CCc-eeEEEEEeEEEEe
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK-GAT-QQVEVQIKKLYCV 175 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~-~~t-~~~El~~~~i~vl 175 (417)
...++|++-. +..-.....+.+||.|.|.|.+....-..+ |.+ ..++|.+++|.+|
T Consensus 47 ~~~~~v~~~g------~~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 47 TDWINVVAWG------KLAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEEEH------HHHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred eEEEEEEeee------ecccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 3346776652 222234566999999999999876332222 433 3499999999875
No 130
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=74.78 E-value=27 Score=32.60 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=33.4
Q ss_pred HHHHcCCCCcEEEEEEEEecCCcc-CCCCc-eeEEEEEeEEEEeecC
Q 014856 134 RFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~~~-~~~~t-~~~El~~~~i~vls~~ 178 (417)
...+.|++|+.|.|+|.+....-. ..+.+ ..+||.++.|.+|...
T Consensus 65 ~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 65 IVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred HHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 456779999999999999864321 22434 3499999999998754
No 131
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=74.73 E-value=22 Score=28.50 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=36.6
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCC-CCc-eeEEEEEeEEEEe
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK-GAT-QQVEVQIKKLYCV 175 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~-~~t-~~~El~~~~i~vl 175 (417)
....++|.+-. +..-..++.+.+||.|.|+|.+....-..+ +.+ ..++|.++.|.++
T Consensus 42 ~~~~~~v~~~g------~~a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 42 ETDWIRVVAFG------KLAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred ccEEEEEEEEh------HHHHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 34456776652 122235667999999999999976432211 333 3489999888764
No 132
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=73.37 E-value=18 Score=30.16 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=35.2
Q ss_pred ccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEE
Q 014856 101 SLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 166 (417)
Q Consensus 101 ~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~E 166 (417)
.+.|+.|++-|+ ++..++|.++.. ..+..+-.|+|.|+|.. ...
T Consensus 12 ~f~gk~V~ivGkV~~~~~~~~~~~~~Dg~~v~v~l~~~------------~~~~~~~~vEViG~V~~----------~~~ 69 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGDSLTLISSDGVNVTVELNRP------------LDLPISGYVEVIGKVSP----------DLT 69 (101)
T ss_pred hhCCCEEEEEEEEEEecCCeEEEEcCCCCEEEEEeCCC------------CCcccCCEEEEEEEECC----------CCe
Confidence 466777777776 455777777642 14677889999999853 244
Q ss_pred EEEeEEEEee
Q 014856 167 VQIKKLYCVS 176 (417)
Q Consensus 167 l~~~~i~vls 176 (417)
|.+....-++
T Consensus 70 I~~~~~~~~g 79 (101)
T cd04479 70 IRVLSYIDFG 79 (101)
T ss_pred EEEEEEEECC
Confidence 6666554444
No 133
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=72.56 E-value=34 Score=31.85 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHcCCCCcEEEEEEEEecCCc-cCCCCce-eEEEEEeEEEEeecC
Q 014856 135 FVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 178 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~-~~~~~t~-~~El~~~~i~vls~~ 178 (417)
+...|++|+.|.|+|.+....- ...|.+. .+||.+++|.+|++.
T Consensus 63 ~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 63 ANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred HHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 4577999999999999975321 2224343 499999999999765
No 134
>PRK02801 primosomal replication protein N; Provisional
Probab=70.36 E-value=26 Score=29.29 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=33.7
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEe
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 175 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vl 175 (417)
.|+|++-- +..-...+.+.+||.|.|+|.+.. .....|.+ .+.|+++.|+.+
T Consensus 49 ~i~~va~G------~~Ae~~~~~l~kGs~v~V~G~L~~-~~~~~g~~-~~~v~~~~i~~l 100 (101)
T PRK02801 49 RMPVIVSG------NQFQAITQSITVGSKITVQGFISC-HQGRNGLS-KLVLHAEQIELI 100 (101)
T ss_pred EEEEEEEc------HHHHHHHhhcCCCCEEEEEEEEEE-eECCCCCE-EEEEEEEEEEEC
Confidence 37887763 222234457999999999999975 12222322 255999988765
No 135
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=69.96 E-value=27 Score=32.11 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=39.0
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~~ 178 (417)
-+.|++.. +....+.+.|.+||.|.|+|.+....- ...|.+ ..++|.+++|.+|+.-
T Consensus 53 w~~Vv~fg------k~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 53 WHRIVFYR------RQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEEh------HHHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 46666652 222345677999999999999986422 123444 3499999999998754
No 136
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=69.54 E-value=51 Score=30.16 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=32.2
Q ss_pred HHHcCCCCcEEEEEEEEecCC-ccCCCCc-eeEEEEEeEEEEeecC
Q 014856 135 FVRSLSNESIVDVIGVVSVPD-VEIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~-~~~~~~t-~~~El~~~~i~vls~~ 178 (417)
..+.|.+|+.|.|+|.+.... ....|.+ ..++|.++.|.+|+-.
T Consensus 57 v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 57 MLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred HHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 456799999999999998532 1223444 3499999999998544
No 137
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=68.97 E-value=69 Score=32.53 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=76.4
Q ss_pred hhCCcEeecCceeeecCCC-----CCcc---eeeeccCC-CceeeccCHHHHHHHhhc-ccC---CceEEEeeccccCCC
Q 014856 245 LSENFVEIHTPKLIAGSSE-----GGSA---VFRLDYKG-QSACLAQSPQLHKQMSIC-GDF---GRVFETGPVFRAEDS 311 (417)
Q Consensus 245 ~~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~~-~~~~L~~Spql~lq~li~-~g~---~rVfeIgp~FR~E~s 311 (417)
.+.+.+.|..|.++...++ .|.+ .|.+..++ ..+-.-+|=--||.|++. -|| +.+|+=....|....
T Consensus 28 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 107 (327)
T PRK05425 28 KKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDED 107 (327)
T ss_pred HhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 3469999999999865432 1333 36665554 577788999999999885 244 578888888886443
Q ss_pred CCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhh
Q 014856 312 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLN 352 (417)
Q Consensus 312 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 352 (417)
-+..|.-=--+-|||..... -+-.++.+...++.|+..+.
T Consensus 108 ld~~HS~yVDQWDWEkvI~~-~~Rn~~~Lk~tV~~Iy~~ik 147 (327)
T PRK05425 108 LDNTHSVYVDQWDWEKVIGK-EERNLDYLKETVEKIYKAIK 147 (327)
T ss_pred cCcccceEeccccHHHhCCc-cccCHHHHHHHHHHHHHHHH
Confidence 58899877788899988754 35566777777777777665
No 138
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=67.66 E-value=46 Score=30.81 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=32.5
Q ss_pred HHHcCCCCcEEEEEEEEecCCccCCCCc-eeEEEEEe---EEEEeecC
Q 014856 135 FVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIK---KLYCVSRA 178 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~~~~~~t-~~~El~~~---~i~vls~~ 178 (417)
..+.|.+||.|.|+|.+....-...|.+ ..+||.++ +|.+|++.
T Consensus 68 v~~~L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~ 115 (175)
T PRK13732 68 AGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRA 115 (175)
T ss_pred HHHhcCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCC
Confidence 4567999999999999875422223444 34899998 89998776
No 139
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=66.47 E-value=18 Score=39.87 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=61.5
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecC--C------CCCcceeee-ccC-CCceeeccCHHHHHHHhhcccC-----C
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGS--S------EGGSAVFRL-DYK-GQSACLAQSPQLHKQMSICGDF-----G 297 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--~------egga~~F~v-~~~-~~~~~L~~Spql~lq~li~~g~-----~ 297 (417)
...+.+.+|+.|...||.||-|-.|++.. . ..+.....+ |-. ...-+||.|-=--|=..+..+. -
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p~ 478 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPI 478 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCCe
Confidence 45666778999999999999999998641 1 011112222 211 2234566553222222333333 3
Q ss_pred ceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 298 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
|+||||.||-.... ..+...|.++|=+-++.. .++.++-.+++.++..+
T Consensus 479 klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l 528 (597)
T PLN02265 479 KLFEVSDVVLLDES-KDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVL 528 (597)
T ss_pred eEEEeEeEEecCCc-ccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHc
Confidence 79999999954321 111111333333333332 14778878788777543
No 140
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=64.55 E-value=67 Score=29.42 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=32.3
Q ss_pred HHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 014856 135 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~~ 178 (417)
....|.+||.|.|+|.+....- ...|.+ ..+||.++.|.+|+..
T Consensus 66 v~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred HHHhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 4567999999999999976432 122433 3499999999998754
No 141
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=64.24 E-value=28 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=33.1
Q ss_pred HHHHcCCCCcEEEEEEEEecCCccCCCCc-eeEEEEEeEEEEeecC
Q 014856 134 RFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~~~~~~~t-~~~El~~~~i~vls~~ 178 (417)
...+.|.+||.|.|+|.+....-...|.+ ..+||.+.+|.+|.+-
T Consensus 60 ~v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~k 105 (131)
T PRK07274 60 TLASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLESR 105 (131)
T ss_pred HHHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcCC
Confidence 34677999999999999886433333444 2489999999988643
No 142
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=63.66 E-value=32 Score=28.96 Aligned_cols=61 Identities=8% Similarity=0.141 Sum_probs=37.6
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEe
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 175 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vl 175 (417)
.+..-|+-+.-.--..+.+...|..+|+.||.|.|.|.+..-.. ++.-..+=|++..|+.+
T Consensus 42 ag~~RQv~~~mpv~vsG~qa~~lt~~i~~Gs~i~v~GFla~~~~--~sg~~~lvlha~qi~~i 102 (103)
T COG2965 42 AGFQRQVWCEMPVRVSGRQAEELTQSITVGSYILVVGFLACHKR--RSGLSKLVLHAEQIEFI 102 (103)
T ss_pred CCcceeEEEEccEEeechhhhhhhhccccccEEEEEEEEEeecc--cCCccEEEEEeeEEEec
Confidence 44444555543211123455567788999999999999875321 12224578888888764
No 143
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=62.47 E-value=35 Score=33.11 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcc----cCCceEEEeeccccC
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG----DFGRVFETGPVFRAE 309 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~----g~~rVfeIgp~FR~E 309 (417)
+.|.+.+-+||.++|...|.+--|++.. |..+.++.|+-...|-.+.| ...|+-..-+|.|.-
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~d-------------DptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~~ 68 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRD-------------DPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRAG 68 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCC-------------CCchheeccchhhhhHHhcCCCCCCCCceeeeeeceecC
Confidence 3567788899999999999877666311 11122222222222222211 235788888889963
Q ss_pred C----CCCcccccccccceeeechhccH--HHHHHHHHHHHHH
Q 014856 310 D----SYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDCLFVT 346 (417)
Q Consensus 310 ~----s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~~ 346 (417)
+ ..|.||++=|.||-- .+|.| | ++.+..+=++|..
T Consensus 69 DienVG~t~rHhTfFEMLGN-fSFgd-YFK~eaI~~awe~LT~ 109 (232)
T cd00673 69 DIDNVGKTGRHHTFFEMLGN-FSFGD-YFKEEAIAFAWELLTE 109 (232)
T ss_pred Chhhccccccchhhhhhhcc-cchhh-hhHHHHHHHHHHHHHh
Confidence 2 358999999999954 56665 5 5666666666544
No 144
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=62.12 E-value=1.7e+02 Score=29.12 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=72.8
Q ss_pred hHHHHHHHHHh-hhCCcEeecCceeeecCCC-----CCcc-e--eeeccC-CCceeeccCHHHHHHHhhc-ccC---Cce
Q 014856 234 SQVGNIFRQFL-LSENFVEIHTPKLIAGSSE-----GGSA-V--FRLDYK-GQSACLAQSPQLHKQMSIC-GDF---GRV 299 (417)
Q Consensus 234 s~i~~~iR~fl-~~~gF~EV~TP~l~~~~~e-----gga~-~--F~v~~~-~~~~~L~~Spql~lq~li~-~g~---~rV 299 (417)
|.+-+.|.++| ...|.+||..|+|+....+ .|.+ + |.+.-. +..+-.-.|---||.+.++ -|| +.+
T Consensus 13 sfvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGl 92 (330)
T COG2502 13 SFVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGL 92 (330)
T ss_pred HHHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCce
Confidence 33444555555 3469999999999763211 1333 3 444333 2334455677788887764 233 689
Q ss_pred EEEeecccc-CCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhh
Q 014856 300 FETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLN 352 (417)
Q Consensus 300 feIgp~FR~-E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 352 (417)
|.=....|. |++-+..|.-=--+-|||....+ -+-.++.+.+.+..|...+.
T Consensus 93 ythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~-g~rNl~yLK~tV~kIY~~ir 145 (330)
T COG2502 93 YTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPD-GDRNLAYLKSTVEKIYAAIR 145 (330)
T ss_pred eeechhcCCCcccccchheEEecccchhhhcCC-ccccHHHHHHHHHHHHHHHH
Confidence 999999996 66678888766667777766654 34445555555555555544
No 145
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=60.51 E-value=5.8 Score=42.67 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=22.6
Q ss_pred ceEEEeeccccCCC--CCcccccccccceeee
Q 014856 298 RVFETGPVFRAEDS--YTHRHLCEFTGLDVEM 327 (417)
Q Consensus 298 rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~ 327 (417)
.+-+||++||||=+ +..--+-||+|+|+|.
T Consensus 167 giaQIGk~FRNEIsPr~~l~R~REF~q~EiE~ 198 (539)
T PRK14894 167 GIAQVGKAFRNEINPRNFLFRVREFEQMEIEY 198 (539)
T ss_pred eEEeeeccccCccCCCCceeecccchhheEEE
Confidence 47899999999942 1122357999999987
No 146
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=60.15 E-value=1.4e+02 Score=30.45 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=84.0
Q ss_pred HHHHhHHHHHHHHHhh-----hCCcEeecCceeeecCCC-----CCcc---eeeeccC-CCceeeccCHHHHHHHhhc-c
Q 014856 230 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-G 294 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~li~-~ 294 (417)
|+.....|..+++||. +.+.+.|..|.++...++ .|.+ .|.+... +..+-.-+|---||.+++. -
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y 84 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARH 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhc
Confidence 3344445555666553 469999999999865432 1333 3666544 5778888999999999885 2
Q ss_pred cC---CceEEEeecccc-CCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhh
Q 014856 295 DF---GRVFETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLN 352 (417)
Q Consensus 295 g~---~rVfeIgp~FR~-E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 352 (417)
|| +.+|+=....|. |.+-+..|.-=--|-|||..... -+-.++.+.+.++.|++.+.
T Consensus 85 ~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~Iy~~ik 145 (330)
T TIGR00669 85 DFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPD-GERNFAYLKSTVEAIYAAIR 145 (330)
T ss_pred CCCCCceeeeccccccCCccccCccceeeeccccHHHhcCc-ccccHHHHHHHHHHHHHHHH
Confidence 45 578988888886 55357889777788899988754 45566666767777666665
No 147
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=59.43 E-value=41 Score=28.47 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=37.4
Q ss_pred cccccccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCC
Q 014856 96 GALNGSLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 161 (417)
Q Consensus 96 ~~l~~~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~ 161 (417)
.++.....+..|+|+|. .++.|+|-+..+.- . -..+++.+.|.|.|.|-+.-
T Consensus 26 ~~a~~~~Dd~~V~L~G~Iv~~l~~d~Y~F~D~TG~I~VeId~~~w-~-------g~~vt~~~~Vri~GeVDk~~------ 91 (103)
T PF04076_consen 26 AQAKNAKDDTPVTLEGNIVKQLGDDKYLFRDATGEIEVEIDDDVW-R-------GQTVTPDDKVRISGEVDKDW------ 91 (103)
T ss_dssp HHHTTS-SSEEEEEEEEEEEEEETTEEEEEETTEEEEEE--GGGS-T-------T----TTSEEEEEEEEEEET------
T ss_pred HHHhhCcCCCeEEEEEEEEEEecCCEEEEECCCCcEEEEEChhhc-C-------CcccCCCCEEEEEEEEeCCC------
Confidence 33434466777888887 66788887764311 0 13589999999999997432
Q ss_pred ceeEEEEEeEEE
Q 014856 162 TQQVEVQIKKLY 173 (417)
Q Consensus 162 t~~~El~~~~i~ 173 (417)
...+|.|..|+
T Consensus 92 -~~~~IdV~~I~ 102 (103)
T PF04076_consen 92 -NKTEIDVDRIE 102 (103)
T ss_dssp -TEEEEEEEEEE
T ss_pred -CceEEEEEEEE
Confidence 24778887764
No 148
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=58.68 E-value=54 Score=27.26 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=39.1
Q ss_pred EEEEeecCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEE-EEecCCccCCCCceeEEEEEeE
Q 014856 107 VLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG-VVSVPDVEIKGATQQVEVQIKK 171 (417)
Q Consensus 107 V~vrgr~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G-~v~~~~~~~~~~t~~~El~~~~ 171 (417)
+.|+.-.++.|+|++-. ....+|...|..|+++.|.| .|.......+...+.+||....
T Consensus 39 ~~l~De~~~~I~~t~~~------~~~~~f~~~l~eG~vy~i~~~~V~~a~~~y~~~~~~yeI~f~~ 98 (104)
T cd04474 39 FDLLDEDGGEIRATFFN------DAVDKFYDLLEVGKVYYISKGSVKVANKKFNTLKNDYEITFNR 98 (104)
T ss_pred EEEEECCCCEEEEEEeh------HHHHHhhcccccccEEEEeccEEeeccccCCCCCCcEEEEECC
Confidence 33444358899999873 23446778899999999996 4444333344444668887764
No 149
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=58.64 E-value=76 Score=30.47 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=32.4
Q ss_pred HHHHcCCCCcEEEEEEEEecCCcc-CCC----Cc-eeEEEEEeEEEEeecC
Q 014856 134 RFVRSLSNESIVDVIGVVSVPDVE-IKG----AT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~~~-~~~----~t-~~~El~~~~i~vls~~ 178 (417)
.++..+.+||-|.|.|.+....-. ..+ .+ ..+||.+.+++.|++-
T Consensus 160 e~~~~l~KG~~V~V~GrL~sr~y~~k~g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 160 RFCKTLEVGDNIRVWGRVQSREYQKKLSEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred HHHhhCCCCCEEEEEEEEEecceEcCCCCccceEEEEEEEEEEEEEEcCCh
Confidence 455679999999999999864221 122 12 3489999999998765
No 150
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=56.96 E-value=31 Score=28.99 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=23.9
Q ss_pred ccCCcEEEEEee----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecC
Q 014856 101 SLKDQEVLIRGR----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 154 (417)
Q Consensus 101 ~~~G~~V~vrgr----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 154 (417)
.+.|+.|+|-|+ +++.|+|.+... ..+..+.+|.|.|+|...
T Consensus 15 ~~~gk~VrivGkv~~~~~~g~~~~l~~~d~~~V~v~l~~~------------~~~~~~~~vEviG~V~~~ 72 (109)
T PF08661_consen 15 QFVGKTVRIVGKVESVDPDGGSATLSTSDGGQVTVSLNPP------------SDEELSKYVEVIGKVNDD 72 (109)
T ss_dssp GGTTSEEEEEEEEEEE-TTSSEEEEE-TTS-EEEEEESS--------------SS---SEEEEEEEE-TT
T ss_pred hhCCCeEEEEEEEeeEcCCCCEEEEEcCCCCEEEEEeCCC------------CCCCCCCEEEEEEEEcCC
Confidence 466777777776 455666655431 134568899999999653
No 151
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=56.65 E-value=20 Score=30.62 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=41.9
Q ss_pred CcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhcC
Q 014856 368 FEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417 (417)
Q Consensus 368 ~~~~~~~~p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E~~L~~~vkek 417 (417)
.+++....|-.|.=|.||+-|.......++|..+++.++=+.|.+-+|++
T Consensus 41 GE~~~~~Tp~Dr~yy~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~r 90 (109)
T TIGR02930 41 GEKINLETPMDKLFYADAKNLASDIKERFPWISELDKDQILELVESVKKR 90 (109)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHH
Confidence 45555556888999999999888877789999999999999999888864
No 152
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=54.87 E-value=22 Score=30.25 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=41.7
Q ss_pred CcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhcC
Q 014856 368 FEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417 (417)
Q Consensus 368 ~~~~~~~~p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E~~L~~~vkek 417 (417)
.+++....|-.|.=|.||+-|.......++|..+++.++=+.|.+-+|++
T Consensus 41 GE~~~~~Tp~Dr~y~~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~r 90 (109)
T TIGR02929 41 GENAREDTSADRCYWVDAVTLAGAYKRRFPWLEDMTKDEIKTLMQALHEK 90 (109)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHH
Confidence 44555556888999999999888877789999999999999999888864
No 153
>PLN02734 glycyl-tRNA synthetase
Probab=54.78 E-value=4.7 Score=44.81 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=22.8
Q ss_pred ceEEEeeccccCCC--CCcccccccccceeee
Q 014856 298 RVFETGPVFRAEDS--YTHRHLCEFTGLDVEM 327 (417)
Q Consensus 298 rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~ 327 (417)
-+-+||++||||=| +..--+-||||.|+|.
T Consensus 277 ~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~ 308 (684)
T PLN02734 277 AAAQIGQAFRNEISPRQGLLRVREFTLAEIEH 308 (684)
T ss_pred eeeeccHhhhcccCcccceeeechhhhhhhhe
Confidence 47899999999942 1222467999999986
No 154
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.61 E-value=77 Score=28.77 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHcCCCCcEEEEEEEEecCCcc-CCCCc-eeEEEEEeEEEEeecC
Q 014856 134 RFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~~~-~~~~t-~~~El~~~~i~vls~~ 178 (417)
.+.+.|.+|+.|.|+|.+....-. ..+.+ ..++|.+++|..|...
T Consensus 64 ~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 64 VAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred HHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 456789999999999999864321 12333 3499999999887653
No 155
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=53.49 E-value=13 Score=33.77 Aligned_cols=24 Identities=29% Similarity=0.280 Sum_probs=16.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHH
Q 014856 19 QSISKKAAKKEAAKKAKEERRKEA 42 (417)
Q Consensus 19 ~~~sk~~lkk~~k~~~k~~kka~~ 42 (417)
..++++++|+..|+.+|++|+.++
T Consensus 61 all~k~e~K~~~K~~KK~~K~~~K 84 (155)
T PF08496_consen 61 ALLDKKELKAWEKAEKKEEKAKAK 84 (155)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhh
Confidence 356888888777777777665443
No 156
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=51.04 E-value=48 Score=26.01 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=35.8
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEe
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 175 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vl 175 (417)
.+..|.|++-.... ......+..|+.|.|.|.+.. ..|.+.|.+.+|++|
T Consensus 24 ~~a~i~cv~f~~~~------~~~~~~l~~Gd~V~v~G~v~~-------~~G~~ql~v~~i~~~ 73 (73)
T cd04487 24 ETGTVWAAAFEEAG------VRAYPEVEVGDIVRVTGEVEP-------RDGQLQIEVESLEVL 73 (73)
T ss_pred CCEEEEEEEEchhc------cCCcCCCCCCCEEEEEEEEec-------CCeEEEEEEeeEEEC
Confidence 45578888875321 112246899999999999864 246799999999875
No 157
>PF03139 AnfG_VnfG: Vanadium/alternative nitrogenase delta subunit; InterPro: IPR004349 The nitrogenase complex 1.18.6.1 from EC catalyses the conversion of molecular nitrogen to ammonia (nitrogen fixation). The complex is hexameric, consisting of 2 alpha, 2 beta, and 2 delta subunits. This family represents the delta subunit of a group of nitrogenases that do not utilise molybdenum (Mo) as a cofactor, but instead use either vanadium (V nitrogenases), or iron (alternative nitrogenases). ; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0055114 oxidation-reduction process
Probab=50.79 E-value=40 Score=28.93 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=42.5
Q ss_pred CCcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhcC
Q 014856 367 PFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417 (417)
Q Consensus 367 ~~~~~~~~~p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E~~L~~~vkek 417 (417)
-.+++....|-.|.=|.||+-|.......++|..+++.++=+.|.+-+|++
T Consensus 43 ~gE~v~~eTp~Drcyw~DAv~la~~~k~rfpW~~~~~k~ei~~lm~~lk~r 93 (112)
T PF03139_consen 43 CGEPVDLETPADRCYWVDAVCLAEAFKERFPWINEMSKDEIKSLMQGLKER 93 (112)
T ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHHHcCcHHHHCCHHHHHHHHHHHHHH
Confidence 345555667888999999999888777788999999999999999988874
No 158
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=50.23 E-value=1.6e+02 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEe---EEEEeecC
Q 014856 135 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIK---KLYCVSRA 178 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~---~i~vls~~ 178 (417)
..+.|.+||.|.|+|.+....- ...+.+ ..+||.+. ++.+|++.
T Consensus 68 ~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 68 AGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred HHHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 4677999999999999975421 122333 34888877 78888754
No 159
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=49.47 E-value=1.3e+02 Score=27.05 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=34.9
Q ss_pred HHHcCCCCcEEEEEEEEecCC-ccCCCCc-eeEEEEEeEEEEeecC-CCCCcc
Q 014856 135 FVRSLSNESIVDVIGVVSVPD-VEIKGAT-QQVEVQIKKLYCVSRA-AKTPIT 184 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~-~~~~~~t-~~~El~~~~i~vls~~-~~lP~~ 184 (417)
....|.+|+.|.|+|.+.... ....|.+ ..++|.++.|.+|..- ...+..
T Consensus 68 v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r~~~~~~~ 120 (148)
T PRK08182 68 WARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYRIESVTLS 120 (148)
T ss_pred HHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCcccccEec
Confidence 456799999999999987542 1222333 3499999999987654 444444
No 160
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=49.21 E-value=68 Score=28.17 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=44.5
Q ss_pred eeecccccccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccC
Q 014856 93 TEVGALNGSLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 158 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 158 (417)
+.+.+......+..|+++|- .++.|+|.+....- . -..+++.+-|.|.|.|-+-
T Consensus 46 ~TV~~Ak~~~Dda~V~l~GnIv~qi~~D~y~FrD~sGeI~VeIdd~~w-~-------g~tv~P~dkV~I~GevDk~---- 113 (128)
T COG3111 46 TTVDQAKTLHDDAWVSLEGNIVRQIGDDRYVFRDASGEINVDIDDKVW-N-------GQTVTPKDKVRIQGEVDKD---- 113 (128)
T ss_pred eEHHHhhccccCCeEEEEeeEEEeeCCceEEEEcCCccEEEEeccccc-C-------CcccCcccEEEEEeEEcCC----
Confidence 33443333455667777775 56689998874311 1 1358999999999998652
Q ss_pred CCCceeEEEEEeEEEEe
Q 014856 159 KGATQQVEVQIKKLYCV 175 (417)
Q Consensus 159 ~~~t~~~El~~~~i~vl 175 (417)
-...||.|..|+.+
T Consensus 114 ---~~~~eIdV~~I~k~ 127 (128)
T COG3111 114 ---WNSVEIDVKHIEKL 127 (128)
T ss_pred ---CccceeEhhheEec
Confidence 12478888887764
No 161
>PRK10053 hypothetical protein; Provisional
Probab=46.81 E-value=67 Score=28.39 Aligned_cols=64 Identities=14% Similarity=0.284 Sum_probs=43.1
Q ss_pred eecccccccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHH-HcCCCCcEEEEEEEEecCCccC
Q 014856 94 EVGALNGSLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDVEI 158 (417)
Q Consensus 94 ~i~~l~~~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~ 158 (417)
.+.+......+..|+++|. .++.|+|-+..+ .|. ..+++.+-|.|.|.|-+.
T Consensus 51 tV~~a~~~~Dd~~V~L~G~Iv~~lg~d~Y~F~D~tG~I~VeID~~---------~w~G~~v~p~~kV~I~GevDk~---- 117 (130)
T PRK10053 51 TVEQAKTMHDGATVSLRGNLIDHKGDDRYVFRDKSGEINVIIPAA---------VFDGREVQPDQMININGSLDKK---- 117 (130)
T ss_pred EHHHhhcCcCCCeEEEEEEEEEEeCCceEEEECCCCcEEEEeCHH---------HcCCCcCCCCCEEEEEEEECCC----
Confidence 3444444466777888887 566788877632 233 359999999999998642
Q ss_pred CCCceeEEEEEeEEE
Q 014856 159 KGATQQVEVQIKKLY 173 (417)
Q Consensus 159 ~~~t~~~El~~~~i~ 173 (417)
-...||-|..|.
T Consensus 118 ---~~~~~IdV~~i~ 129 (130)
T PRK10053 118 ---SAPPVVRVTHLQ 129 (130)
T ss_pred ---CCCeEEEEEEEe
Confidence 124678777765
No 162
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=46.44 E-value=69 Score=28.18 Aligned_cols=64 Identities=13% Similarity=0.267 Sum_probs=41.1
Q ss_pred eecccccccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHHH-cCCCCcEEEEEEEEecCCccC
Q 014856 94 EVGALNGSLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSVPDVEI 158 (417)
Q Consensus 94 ~i~~l~~~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~~-~l~~es~V~V~G~v~~~~~~~ 158 (417)
.++++.....+..|.++|. .++.|.|-+... .|.. .+++.+-|.|.|.|-+.-
T Consensus 47 tV~~a~~~~Ddt~V~L~G~Iv~~l~~d~Y~F~D~TG~I~VeId~~---------~w~G~~v~p~d~V~I~GeVDk~~--- 114 (126)
T TIGR00156 47 TVDFAKSMHDGASVTLRGNIISHIGDDRYVFRDKSGEINVVIPAA---------VWNGREVQPKDMVNISGSLDKKS--- 114 (126)
T ss_pred eHHHHhhCCCCCEEEEEEEEEEEeCCceEEEECCCCCEEEEECHH---------HcCCCcCCCCCEEEEEEEECCCC---
Confidence 3344333455777777777 566777776521 2332 588999999999996421
Q ss_pred CCCceeEEEEEeEEE
Q 014856 159 KGATQQVEVQIKKLY 173 (417)
Q Consensus 159 ~~~t~~~El~~~~i~ 173 (417)
...||-|..|+
T Consensus 115 ----~~~~IdV~~I~ 125 (126)
T TIGR00156 115 ----APAEVDVTHIQ 125 (126)
T ss_pred ----CCeEEEEEEEE
Confidence 23677777764
No 163
>PRK00036 primosomal replication protein N; Reviewed
Probab=45.52 E-value=86 Score=26.79 Aligned_cols=52 Identities=10% Similarity=0.204 Sum_probs=37.4
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.||+++.- ++......++.|+.|.|+|.+.... .....+=||++.|+.+...
T Consensus 48 ~i~ava~G-------~~a~~~~~l~~Gs~v~v~GFLa~~~----~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 48 TISAVALG-------DLALLLADTPLGTEMQVQGFLAPAR----KDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEh-------hHHHHhcccCCCCEEEEEEEEEECC----CCCCcEEEEhHHeEEcccc
Confidence 47777762 4455667899999999999998521 1124589999999887443
No 164
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=45.08 E-value=1e+02 Score=24.55 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=26.8
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEE
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 151 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v 151 (417)
..+.+++.+..... ..+-.|+..++.||.|.|.|-.
T Consensus 59 ~~~~~~~~ik~~~~---G~~S~~L~~l~~Gd~v~i~gP~ 94 (99)
T PF00970_consen 59 DKGYLEFAIKRYPN---GRVSRYLHQLKPGDEVEIRGPY 94 (99)
T ss_dssp SSSEEEEEEEECTT---SHHHHHHHTSCTTSEEEEEEEE
T ss_pred CCCcEEEEEEeccC---CHHHHHHHhCCCCCEEEEEEcc
Confidence 45578888886532 2345688889999999999965
No 165
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=44.10 E-value=24 Score=38.18 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=33.1
Q ss_pred ceEEEeeccccCCCCCcccccccccceeeec--hhccHHHHHHHHHHHHHHH
Q 014856 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEME--IKKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 298 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a--~~~~~~d~m~~~e~li~~i 347 (417)
|.||||+|||.+.....+|+.-+.+...-.. -. ++.|+..+++.|+..+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~v-DFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDV-TVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCC-CHHHHHHHHHHHHHHc
Confidence 8999999998863224567766655532111 12 4889999999988764
No 166
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=42.41 E-value=61 Score=29.93 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHcCCCCcEEEEEEEEecCCccCCCCc-eeEEEEEe---EEEEeecC
Q 014856 134 RFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIK---KLYCVSRA 178 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~~~~~~~t-~~~El~~~---~i~vls~~ 178 (417)
...+.|.+|+.|.|+|.+....-...|.+ ..+||.+. .|.+|+..
T Consensus 66 ~v~~~l~KGs~V~VeGrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~~ 114 (172)
T PRK05733 66 IAGEYLRKGSQVYIEGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGR 114 (172)
T ss_pred HHHHHhCCCCEEEEEEEEEeCcEecCCEEEEEEEEEEeecCeEEECcCC
Confidence 35677999999999999986543323333 24899998 78888643
No 167
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.04 E-value=1.3e+02 Score=33.41 Aligned_cols=60 Identities=7% Similarity=0.160 Sum_probs=39.7
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEE-EEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~-G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.++.|++.+.. ...-+|...|..|+++.|. |.|.............+||....-..+.+|
T Consensus 225 egg~Irat~f~------~~~dkf~~~l~eG~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~ 285 (608)
T TIGR00617 225 ESGEIRATAFN------EQADKFYDIIQEGKVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEEC 285 (608)
T ss_pred CCCeEEEEECc------hHHHHHhhhcccCCEEEECceEEEEccccccCCCCCEEEEECCCeEEEEC
Confidence 45556665542 2344678889999999996 456544333334446699999887777666
No 168
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=40.77 E-value=2.2e+02 Score=27.29 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=38.2
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCc-eeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t-~~~El~~~~i~vls~~ 178 (417)
....|.|++... ....+. +..|+.|.|+|.+..=.....+.. --+||.+.+|..|++.
T Consensus 45 ~~D~i~v~v~~r-------lae~~~-l~kG~~v~VeGqlrsy~~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 45 SKDILPVTVSER-------LLAGMD-LKVGTLVIVEGQLRSYNKFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred CccEEEEEEEhh-------hhhhhc-ccCCCEEEEEEEEEEeccCCCCcEEEEEEEEEEEEEEccCC
Confidence 455678887643 222333 999999999999982111101222 3499999999998875
No 169
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=40.54 E-value=80 Score=35.53 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee-ccC-CCceeeccCHHHHHHHhhcccC------CceEEEeec
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL-DYK-GQSACLAQSPQLHKQMSICGDF------GRVFETGPV 305 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v-~~~-~~~~~L~~Spql~lq~li~~g~------~rVfeIgp~ 305 (417)
..+.+.+|++|...||.|+-|-.+++... ....+..+ |-. ....+||.|-=--+=..+..+. -|+||||.|
T Consensus 401 ~~~~~~ir~~L~~~Gf~Evitysf~s~~~-~~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~V 479 (704)
T CHL00192 401 YNTRDKIRSYLRNLGLTELIHYSLVKQES-FSKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHV 479 (704)
T ss_pred HHHHHHHHHHHHhCCCceEecccccChhh-cCCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeee
Confidence 34456679999999999999999976421 11122222 222 2345666653222222222222 379999999
Q ss_pred cccCCC--CCcccccccccce------eee--chhccHHHHHHHHHHHHHHH
Q 014856 306 FRAEDS--YTHRHLCEFTGLD------VEM--EIKKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 306 FR~E~s--~t~rHl~EFt~lE------~e~--a~~~~~~d~m~~~e~li~~i 347 (417)
|-..+. ...+|+.=...-. |.- .-. ++.|+-..++.++..+
T Consensus 480 f~~~~~~~~e~~~la~~~~g~~~~~~~w~~~~~~~-dF~d~Kg~le~ll~~l 530 (704)
T CHL00192 480 FNLDSSSIIEETELAGGIFGGIDIRSSWSEKAQSL-NWFEAKGIIENFFQKL 530 (704)
T ss_pred EcCCCccccccceEEEEEECCCcCccccCCCCCcc-CHHHHHHHHHHHHHHC
Confidence 943211 1112221111111 100 011 3778888888888654
No 170
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=40.46 E-value=1.8e+02 Score=23.82 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEE
Q 014856 136 VRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYC 174 (417)
Q Consensus 136 ~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~v 174 (417)
...+..|++|.|.|.+..- .+...|.++.++.
T Consensus 60 ~~~i~~G~vvrV~G~i~~f-------rg~~ql~i~~~~~ 91 (92)
T cd04483 60 AKVLEIGDLLRVRGSIRTY-------RGEREINASVVYK 91 (92)
T ss_pred ccccCCCCEEEEEEEEecc-------CCeeEEEEEEEEe
Confidence 4569999999999998642 2456777776653
No 171
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=37.77 E-value=87 Score=34.59 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcc----cCCceEEEeecccc-
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG----DFGRVFETGPVFRA- 308 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~----g~~rVfeIgp~FR~- 308 (417)
+.|-+.|-+||.++|-..|.+--|++.. +.+++++.|+--..|-.+.| ...|+=..-+|.|.
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~-------------d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~~ 70 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPEN-------------DPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRTG 70 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCC-------------CCCeeeeccchhhhhHHhcCCCCCCCCCccccccccccc
Confidence 4566788899999998888876666421 11222222222222222211 13567777788886
Q ss_pred --CCCCCcccccccccceeeechhccH--HHHHHHHHHHHHH
Q 014856 309 --EDSYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDCLFVT 346 (417)
Q Consensus 309 --E~s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~~ 346 (417)
|+..|.||++=|.||-- .+|.| | ++.+..+=+||..
T Consensus 71 Dle~VG~~rHhTfFEMlGn-fSfgd-YfK~eai~~awe~lt~ 110 (594)
T PRK01584 71 DIDEVGDLSHLTFFEMLGN-WSLGA-YFKEESIKYSFEFLTS 110 (594)
T ss_pred cccccCCCcchhHHHhhcc-ccHhh-hhHHHHHHHHHHHhcc
Confidence 44457899999999874 56665 5 5666666666543
No 172
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.32 E-value=8 Score=41.08 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEeeccccC--CCCCcccccccccceee
Q 014856 301 ETGPVFRAE--DSYTHRHLCEFTGLDVE 326 (417)
Q Consensus 301 eIgp~FR~E--~s~t~rHl~EFt~lE~e 326 (417)
+||.+|||| .-.+.-+-.||||.|+|
T Consensus 214 qiG~~fRNEISpRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 214 QIGKSFRNEISPRSGLLRVREFTMAEIE 241 (599)
T ss_pred HhchHhhhccCcccCceeEEEeehHHhh
No 173
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=36.06 E-value=2.5e+02 Score=23.14 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=34.8
Q ss_pred cCceEEEEEeeCCCCccHHHHHHH--HcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEE
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFV--RSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 173 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~--~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~ 173 (417)
+...|+|++..+. ...+ ..+..|+-|.|.|.+..-+ ..|.+.|.+.+|.
T Consensus 48 ~~a~i~~~~~~~~-------~~~i~~~~l~~G~~V~v~g~~~~y~-----~~G~~sl~v~~i~ 98 (99)
T PF13742_consen 48 EEASISCVIFRSR-------ARRIRGFDLKDGDKVLVRGRVSFYE-----PRGSLSLIVEDID 98 (99)
T ss_pred CCcEEEEEEEHHH-------HhhCCCCCCCCCCEEEEEEEEEEEC-----CCcEEEEEEEEeE
Confidence 4578899988532 1122 3689999999999987532 2367999998874
No 174
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=34.84 E-value=90 Score=35.58 Aligned_cols=105 Identities=17% Similarity=0.253 Sum_probs=56.8
Q ss_pred HHHHHHhhhCCcEeecCceeeecC-C-----CCCcceeee-ccC-CCceeeccC--HHHHHHHhh--cccCC--ceEEEe
Q 014856 238 NIFRQFLLSENFVEIHTPKLIAGS-S-----EGGSAVFRL-DYK-GQSACLAQS--PQLHKQMSI--CGDFG--RVFETG 303 (417)
Q Consensus 238 ~~iR~fl~~~gF~EV~TP~l~~~~-~-----egga~~F~v-~~~-~~~~~L~~S--pql~lq~li--~~g~~--rVfeIg 303 (417)
+.+|++|...||.||-|-.+++.. . ........+ |-. ..--+||.| |.|..-..- ..+.. |+||||
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG 577 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIG 577 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeee
Confidence 467999999999999999997541 1 000002222 111 223355555 333332111 12333 899999
Q ss_pred eccccCCCCCcccccccccceeeech-------------hccHHHHHHHHHHHHHHH
Q 014856 304 PVFRAEDSYTHRHLCEFTGLDVEMEI-------------KKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 304 p~FR~E~s~t~rHl~EFt~lE~e~a~-------------~~~~~d~m~~~e~li~~i 347 (417)
.||...+. . ..|..+|=+-++. . ++.|+...++.++..+
T Consensus 578 ~V~~~~~~-~---~~e~~~La~~~~g~~~~~~~~~~~~~~-df~d~Kg~le~ll~~l 629 (798)
T TIGR00472 578 KVFAKDGL-G---VKEQLRLAILISGEKNPSSWNHKEEKV-DFYDLKGDVESLLELL 629 (798)
T ss_pred cccCCCCC-C---cchhhEEEEEEECCCCcccccCCCCcC-ChHHHHHHHHHHHHHc
Confidence 99954221 0 1233333222222 2 3778888888888644
No 175
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=34.77 E-value=1.1e+02 Score=34.82 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecC-CC--C-Ccceeee-cc-CCCceeeccCHHHHHHHhh----cccCC--ceEEE
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGS-SE--G-GSAVFRL-DY-KGQSACLAQSPQLHKQMSI----CGDFG--RVFET 302 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~-~e--g-ga~~F~v-~~-~~~~~~L~~Spql~lq~li----~~g~~--rVfeI 302 (417)
.+.+.+|++|...||.||-|-.+++.. .. + ......+ |- -..--+||.|-=.-|=..+ ..+.. |.|||
T Consensus 491 ~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEi 570 (791)
T PRK00629 491 RLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEI 570 (791)
T ss_pred HHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 344678999999999999999997531 01 0 0012222 22 1233466655322222222 12333 89999
Q ss_pred eeccccCCCCCcccccccccceeeech------------hccHHHHHHHHHHHHHHH
Q 014856 303 GPVFRAEDSYTHRHLCEFTGLDVEMEI------------KKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 303 gp~FR~E~s~t~rHl~EFt~lE~e~a~------------~~~~~d~m~~~e~li~~i 347 (417)
|+||.... + ...|-++|=+-++. . ++.++...++.++..+
T Consensus 571 G~Vf~~~~--~--~~~e~~~la~~~~g~~~~~~w~~~~~~-df~~~Kg~le~ll~~l 622 (791)
T PRK00629 571 GRVFLPDG--D--LPREPEHLAGVLTGNRVEESWGGKRPV-DFFDLKGDVEALLEAL 622 (791)
T ss_pred eeeeCCCC--C--CCcchhEEEEEEECCCccccccccCCC-CHHHHHHHHHHHHHHc
Confidence 99996421 0 01122222222221 2 3778888888888644
No 176
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=34.30 E-value=1.8e+02 Score=27.29 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=31.1
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCce-eEEEEEeEE
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKL 172 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t~-~~El~~~~i 172 (417)
.+.|++-. +.....++.|++|+.|.|+|.+....- ...+.+. .+||.+++|
T Consensus 54 fi~V~~Wg------~~Ae~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 54 FLRCSIWR------QAAENVAESLTKGMRVIVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred EEEEEEec------HHHHHHHHhcCCCCEEEEEEEEEcCceECCCCCEEEEEEEEEEEc
Confidence 46666653 222235678999999999999985421 1123222 377777665
No 177
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=33.89 E-value=61 Score=35.35 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhCCcEeecCceeeec-C-----CCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccC
Q 014856 236 VGNIFRQFLLSENFVEIHTPKLIAG-S-----SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 309 (417)
Q Consensus 236 i~~~iR~fl~~~gF~EV~TP~l~~~-~-----~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E 309 (417)
|-+.|-+||.++|..-|.+=-|++. . +..|..+|+ ++||... .-....|+-..-+|.|.-
T Consensus 2 iR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fk------p~f~g~~--------~~p~~~r~~~~Q~CiR~~ 67 (552)
T PF01411_consen 2 IREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFK------PYFLGGE--------VPPPANRLVSSQKCIRTG 67 (552)
T ss_dssp HHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGC------CCCTTSS--------S--SSSCEEEEEEEE-EE
T ss_pred HHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHH------HHhcCCC--------CCCCCCcccccceeeccC
Confidence 4567888999999888876555542 1 112333332 2222221 123458999999999976
Q ss_pred ----C----CCCcccccccccceeeechhccH-HHHHHHHHHHHH
Q 014856 310 ----D----SYTHRHLCEFTGLDVEMEIKKHY-SEVMDIVDCLFV 345 (417)
Q Consensus 310 ----~----s~t~rHl~EFt~lE~e~a~~~~~-~d~m~~~e~li~ 345 (417)
+ ..|.||++=|.||-- .+|.+.+ ++.+.++-+++.
T Consensus 68 GkhnDld~VG~t~rH~T~FEMlGn-~sfgdYfK~eai~~awe~lt 111 (552)
T PF01411_consen 68 GKHNDLDNVGRTGRHHTFFEMLGN-FSFGDYFKEEAIEYAWEFLT 111 (552)
T ss_dssp TTEECGGGTTTSSS--SEEEEEEE-EEECSS-HHHHHHHHHHHHH
T ss_pred CCcchhhhcCCCceEeeehhhccc-cccccccHHHHHHHHHHHHH
Confidence 2 348999999999875 5565522 456666655554
No 178
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=32.64 E-value=48 Score=25.56 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHHHhhhCCcEeec
Q 014856 231 RIQSQVGNIFRQFLLSENFVEIH 253 (417)
Q Consensus 231 ~~rs~i~~~iR~fl~~~gF~EV~ 253 (417)
+.|..|++.||+||...|=|.|.
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAVL 24 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEEE
Confidence 46889999999999999987764
No 179
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=32.24 E-value=1.5e+02 Score=22.12 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=33.8
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEe
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 175 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vl 175 (417)
.++.+.+++.. ....++...+..|..|.|.|.+..- .+.++|.+.++..+
T Consensus 28 ~tg~~~~~~f~------~~~~~~~~~l~~g~~v~v~G~v~~~-------~~~~~l~~~~i~~~ 77 (84)
T cd04485 28 LTGSIEVVVFP------ETYEKYRDLLKEDALLLVEGKVERR-------DGGLRLIAERIEDL 77 (84)
T ss_pred CCCeEEEEECH------HHHHHHHHHhcCCCEEEEEEEEEec-------CCceEEEeeccccH
Confidence 56667777763 1222345679999999999998642 13578887776544
No 180
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=30.24 E-value=82 Score=25.00 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=22.1
Q ss_pred HcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeE-EEEee
Q 014856 137 RSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKK-LYCVS 176 (417)
Q Consensus 137 ~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~-i~vls 176 (417)
..+..||.|.|.|+|..-. +..+|.... +.+++
T Consensus 43 ~~~~~Gd~V~vtG~v~ey~-------g~tql~~~~~~~~~~ 76 (78)
T cd04486 43 ADVAVGDLVRVTGTVTEYY-------GLTQLTAVSAIEVLG 76 (78)
T ss_pred CCCCCCCEEEEEEEEEeeC-------CeEEEccCCceEEec
Confidence 4689999999999997521 235555544 55544
No 181
>PRK15491 replication factor A; Provisional
Probab=30.17 E-value=1.5e+02 Score=30.71 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=36.4
Q ss_pred cCceEEEEEeeCCCCccHHHHHHH-HcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.+++|.+++-... . -.+. ..|..|+++.|.|.+.. +- +.+||.+.+...+.+|
T Consensus 103 eTG~ir~tlW~~~--a----~~~~~~~le~G~v~~I~~~~~~------~y-~g~Ei~i~~~~~i~~~ 156 (374)
T PRK15491 103 ETGSIRLTLWDDL--A----DLIKTGDIEVGKSLNISGYAKE------GY-SGIEVNIGRYGGISES 156 (374)
T ss_pred CCCeEEEEEECch--h----hhhccCCcCCCCEEEEeeeecc------Cc-ccEEEEeCCCceeeec
Confidence 7778888886421 1 1122 35999999999997532 21 2389999988888887
No 182
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=29.96 E-value=1e+02 Score=30.25 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=30.6
Q ss_pred eEEEEEeeCCCC-ccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEee
Q 014856 116 TVQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 176 (417)
Q Consensus 116 ~iQ~v~~~~~~~-~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls 176 (417)
.|.|++...... .+- . ...+ .|++|.|.|.+.. +..+|.++.|.++.
T Consensus 101 ~i~~~~~~~~~~~~~l---~-~~~~-~G~~V~VkG~vsr---------~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 101 TIECKCSKSSYLSMGL---P-INDL-IGKVVEVKGTVSR---------NERQLDVERIELVR 148 (256)
T ss_dssp EEEEEEEHHHHHCCCH---H-CTT--TT-EEEEEEEEES---------SSEEEEEEEEEEET
T ss_pred eEEEEEEcccccccCC---C-ccCC-CCcEEEEEEEEcc---------CcEEEEEEEEEccC
Confidence 888888753110 111 1 2345 9999999999972 35889999998765
No 183
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.93 E-value=41 Score=35.92 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=63.7
Q ss_pred HHHhHHHHHHHHHhhhCCcEeecCceeeecCC--CCC------cceeeecc----C--------CCceeeccCHHHHHHH
Q 014856 231 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGG------SAVFRLDY----K--------GQSACLAQSPQLHKQM 290 (417)
Q Consensus 231 ~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--egg------a~~F~v~~----~--------~~~~~L~~Spql~lq~ 290 (417)
++...++.+||.=...+||.||-||.|-.... .+| -+.|+++- | |.-+-.+.-+-=|.++
T Consensus 193 ~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reL 272 (560)
T KOG1637|consen 193 RIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYREL 272 (560)
T ss_pred hHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHhhC
Confidence 67889999999999999999999998865321 111 22555522 1 1111122222223332
Q ss_pred hhcccCCceEEEeeccccCCCC---CcccccccccceeeechhccHHHHHHHHHHHH
Q 014856 291 SICGDFGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 291 li~~g~~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
= -|.=.+|+.-|||-|. +.+|+-.|.+=|.-+ |+. -+.+-+.+..++
T Consensus 273 P-----lR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt-~~Qi~~Eik~~l 322 (560)
T KOG1637|consen 273 P-----LRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCT-PDQVKEEIKGCL 322 (560)
T ss_pred C-----ccccCcceeeeccccccccccceeeeecccCceE-Eec-CccHHHHHHHHH
Confidence 1 1344578889999752 478999999988765 333 244444444433
No 184
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=28.04 E-value=1.4e+02 Score=26.84 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=30.5
Q ss_pred HHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEE----EEeecC
Q 014856 135 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKL----YCVSRA 178 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i----~vls~~ 178 (417)
..+.|.+|+.|.|+|.+....- ...|.+ ...||.+..| .+|.+.
T Consensus 68 ~~~~l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 68 VERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred HHHhCCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 4567999999999999986422 223444 3489999876 566644
No 185
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=27.44 E-value=1.2e+02 Score=26.31 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred CcEEEEEee--cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEec
Q 014856 104 DQEVLIRGR--RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 153 (417)
Q Consensus 104 G~~V~vrgr--~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 153 (417)
+..+.+.+. +...++|.+..+.. .......|..|+.|.|.|++..
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~l~~G~~Vti~G~~~g 131 (144)
T PF12869_consen 85 DNYVVLLGTENGFAGVQCYFSNDQE-----KRASVAKLKKGQKVTIKGICTG 131 (144)
T ss_dssp T-EEEEEE-TT-S-S--EEEEEEGG-----GHHHHHH--TTSEEEEEEE---
T ss_pred CcEEEEccCCCCceeEEEEEccchh-----hhhhHhcCCCCCEEEEEEEEEe
Confidence 334444444 45567887775321 1122345999999999998753
No 186
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=26.54 E-value=76 Score=32.76 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=40.2
Q ss_pred eeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcc-cccccccceeeech---hccHHHHHHH
Q 014856 279 CLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR-HLCEFTGLDVEMEI---KKHYSEVMDI 339 (417)
Q Consensus 279 ~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~r-Hl~EFt~lE~e~a~---~~~~~d~m~~ 339 (417)
||.-..+--++..|.+-..--++||++|+.+..+-.+ -...|+-+|=|..| .++|+++-..
T Consensus 61 Y~sFn~~~~~~k~i~s~nP~KiDIGaVY~~~P~~~~t~~~s~~~~vekELVFDIDmTDYD~VR~C 125 (412)
T KOG2851|consen 61 YLSFNNASEFEKEISSTNPDKIDIGAVYSHRPRNHKTLRKSDFQAVEKELVFDIDMTDYDDVRTC 125 (412)
T ss_pred EeccCCHHHHHHHHhhcCCcceeecccccCCccccccccccccceeeeeeEEecccccChHHhhh
Confidence 3433443333334566778889999999998742221 24799999998888 3458776554
No 187
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=26.40 E-value=1e+02 Score=33.44 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=15.6
Q ss_pred CccCChhHHHHHHHHHHHHHHHHHH
Q 014856 18 SQSISKKAAKKEAAKKAKEERRKEA 42 (417)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~ 42 (417)
...+|-.+.||..|++.|+++|+++
T Consensus 404 ~~~~~~~e~Kk~~kK~kK~~~k~~~ 428 (517)
T PF12569_consen 404 NENMSAAERKKAKKKAKKAAKKAKK 428 (517)
T ss_pred cccCChHHHHHHHHHHHHHHHHHhH
Confidence 3456777777776666666555543
No 188
>COG3689 Predicted membrane protein [Function unknown]
Probab=26.40 E-value=1.2e+02 Score=29.99 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=48.2
Q ss_pred cccCCcEEEEEee---------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCcee
Q 014856 100 GSLKDQEVLIRGR---------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ 164 (417)
Q Consensus 100 ~~~~G~~V~vrgr---------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~ 164 (417)
++.+||+|-+-|. +.+.+=|++++......-++- --..++.-++|.|+|++....-+. ....-
T Consensus 171 def~Gk~Ie~tGFVy~~~~~~~N~lflaRFgiicC~ADa~vygl~v~~~-~~~~y~ndtWltvkGtl~~e~~~~-~~~~i 248 (271)
T COG3689 171 DEFAGKKIEFTGFVYNDESFPKNYLFLARFGIICCAADAGVYGLLVELD-NQTDYKNDTWLTVKGTLSSEYLSD-FKKRI 248 (271)
T ss_pred hhhcCceEEEEEEEECCCCCCcceeehhhhheeeeeccceeEEEEEEcc-ccccCCCCceEEEEeEEEeeecCc-hhhcC
Confidence 4688999999998 555566666543211000000 124689999999999997532110 11234
Q ss_pred EEEEEeEEEEeecC
Q 014856 165 VEVQIKKLYCVSRA 178 (417)
Q Consensus 165 ~El~~~~i~vls~~ 178 (417)
.-|++++++++.+.
T Consensus 249 pvi~v~sv~~I~kP 262 (271)
T COG3689 249 PVIEVDSVEVIPKP 262 (271)
T ss_pred cEEEeeeeeecCCC
Confidence 78999999988765
No 189
>PRK05853 hypothetical protein; Validated
Probab=26.01 E-value=3.7e+02 Score=24.54 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=33.7
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEE
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKL 172 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i 172 (417)
+..+.|++-.+ ......+.|.+|+-|.|+|.+....- ...+.+ ..+||.+++|
T Consensus 42 T~wi~V~~wg~------lAe~v~~~L~KG~~V~V~GrL~~~~wedkdG~~r~~~eV~a~~V 96 (161)
T PRK05853 42 SLFITVNCWGR------LVTGVGAALGKGAPVIVVGHVYTSEYEDRDGNRRSSLEMRATSV 96 (161)
T ss_pred ccEEEEEEEhH------HHHHHHHHcCCCCEEEEEEEEEccceECCCCCEEEEEEEEEEEe
Confidence 33466666521 22234677999999999999986422 122433 3488888886
No 190
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=25.79 E-value=2.3e+02 Score=30.13 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=39.3
Q ss_pred cCCcEEEEEee----------------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCC
Q 014856 102 LKDQEVLIRGR----------------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 159 (417)
Q Consensus 102 ~~G~~V~vrgr----------------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~ 159 (417)
..|+.|+|.|. .++.+.+++.. +.+.++...|..+.+|.|+|++...+
T Consensus 278 ~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp------~~y~~~~~~l~~~~~v~v~G~v~~~~---- 347 (449)
T PRK07373 278 KEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFP------KSYERISELLQVDARLIIWGKVDRRD---- 347 (449)
T ss_pred cCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECH------HHHHHHHHHhccCCEEEEEEEEEecC----
Confidence 34777888877 34445555542 33445667799999999999996421
Q ss_pred CCceeEEEEEeEEEE
Q 014856 160 GATQQVEVQIKKLYC 174 (417)
Q Consensus 160 ~~t~~~El~~~~i~v 174 (417)
+.+.|.+.+|.-
T Consensus 348 ---~~~~liv~~i~~ 359 (449)
T PRK07373 348 ---DQVQLIVEDAEP 359 (449)
T ss_pred ---CeEEEEEeEeec
Confidence 346677777643
No 191
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=25.32 E-value=3e+02 Score=20.72 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=35.4
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
.++.+.+++.... . .....+..|.+|.|.|.+..- .+.++|.+.+|..+..
T Consensus 28 ~tg~i~~~~f~~~----~---~~~~~l~~g~~v~v~G~v~~~-------~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 28 KTGEIEAKLWDAS----E---EDEEKFKPGDIVHVKGRVEEY-------RGRLQLKIQRIRLVTE 78 (83)
T ss_pred CCCeEEEEEcCCC----h---hhHhhCCCCCEEEEEEEEEEe-------CCceeEEEEEEEECCc
Confidence 5667888886321 1 225679999999999999641 1357888888876653
No 192
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=25.16 E-value=3.7e+02 Score=21.76 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=34.9
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
+++.|.|++..... .+......|..||.|.|.|.+..- + .|.++++.+++..
T Consensus 26 ~~~~i~cv~f~~~g----~~~~~~~~l~~Gd~V~v~G~v~~y---------~-ql~ve~l~~~glg 77 (91)
T cd04482 26 GTGEIDCAAYEPTK----EFRDVVRLLIPGDEVTVYGSVRPG---------T-TLNLEKLRVIRLA 77 (91)
T ss_pred CCcEEEEEEECccc----ccccccCCCCCCCEEEEEEEEecC---------C-EEEEEEEEECCCc
Confidence 45678888875321 111234569999999999998542 1 5888888886643
No 193
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=1.2e+02 Score=33.70 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=62.4
Q ss_pred HHhHHHHHHHHHhhhCCcEeecCceeeecCC----CCCcc-eeeecc--CCCceeeccCHHHHHHHhhcc----c--CCc
Q 014856 232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EGGSA-VFRLDY--KGQSACLAQSPQLHKQMSICG----D--FGR 298 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~----egga~-~F~v~~--~~~~~~L~~Spql~lq~li~~----g--~~r 298 (417)
..+...+.+|++|...||.||-|-.|++... .++.. ...+.. -..--+||.|---.|-.++.- + --|
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~ 431 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVR 431 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCee
Confidence 4566778899999999999999999975321 11111 111211 112345666644444333321 1 258
Q ss_pred eEEEeeccccCCCCCc--ccc---------cccccceeeechhccHHHHHHHHHHHHHHHh
Q 014856 299 VFETGPVFRAEDSYTH--RHL---------CEFTGLDVEMEIKKHYSEVMDIVDCLFVTIF 348 (417)
Q Consensus 299 VfeIgp~FR~E~s~t~--rHl---------~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 348 (417)
+||||.+|-..+.... +|+ .+-|.-. .-. ++.++-.+++.++..+-
T Consensus 432 iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~---~~v-~f~d~Kg~ve~ll~~lg 488 (650)
T COG0072 432 IFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK---RPV-DFYDAKGDLEALLEALG 488 (650)
T ss_pred EEEeeeeEecCCcccchhHHHHHHhhccccccccccC---CCc-CHHHHHHHHHHHHHHhC
Confidence 9999999997532110 011 2222222 012 36777777887776653
No 194
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=23.25 E-value=1.3e+02 Score=34.88 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhccc-----CCceEEEeecccc
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD-----FGRVFETGPVFRA 308 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g-----~~rVfeIgp~FR~ 308 (417)
+.|-..|-+||.++|-.-|.+=-+++ ....+++|+.|+-.-.|-.+..| ..|+-..-||.|.
T Consensus 62 ~eiR~~Fl~FF~~~gH~~v~s~pvvp-------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~ 128 (900)
T PRK13902 62 KEMREKFLSFFEKHGHTRIERYPVVA-------------RWRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRL 128 (900)
T ss_pred HHHHHHHHHHHHhCCCEEcCCcCcCC-------------CCCCCeeeeecchhhhhHHhcCCCCCCCCCCceecccccch
Confidence 44556777899999966665433322 11223666666655555555433 3788888999997
Q ss_pred CC----CCCcccccccccceeeechh-----cc-HHHHHHHHHHHHHH
Q 014856 309 ED----SYTHRHLCEFTGLDVEMEIK-----KH-YSEVMDIVDCLFVT 346 (417)
Q Consensus 309 E~----s~t~rHl~EFt~lE~e~a~~-----~~-~~d~m~~~e~li~~ 346 (417)
.+ ..|.||++=|.||-- .+|. +. -+|.+.++-++|..
T Consensus 129 nDldnVG~t~rH~T~FEMlGn-~sFg~~~~~~YfK~eaI~~a~e~lt~ 175 (900)
T PRK13902 129 NDIDNVGRTGRHLTSFEMMAH-HAFNYPDKEVYWKDETVEYCFEFFTK 175 (900)
T ss_pred hhhhhccccCCchhhhhhccc-eeeCCCCcccccHHHHHHHHHHHHHh
Confidence 53 358999999999974 4454 21 16778887777765
No 195
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=23.11 E-value=3.8e+02 Score=21.19 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=26.9
Q ss_pred HHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 136 VRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 136 ~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
...+..|+.|.|.|.+..- .+...|.+..+..+...
T Consensus 45 ~~~~~~g~~v~v~G~v~~~-------~g~~ql~i~~i~~v~d~ 80 (95)
T cd04478 45 VEPIEEGTYVRVFGNLKSF-------QGKKSIMAFSIRPVTDF 80 (95)
T ss_pred ccccccCCEEEEEEEEccc-------CCeeEEEEEEEEEeCCc
Confidence 3569999999999998642 24578888888876543
No 196
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=22.74 E-value=1e+02 Score=27.74 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=36.2
Q ss_pred ccccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHH
Q 014856 214 LNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQ 285 (417)
Q Consensus 214 l~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spq 285 (417)
+++||||+...--....-+-..|-+.+++++ .||-++|.-- -....++...+.+|.---..|+.+--+
T Consensus 26 vN~R~Ldi~~rlP~~l~~lE~~ir~~i~~~l-~RGkV~v~i~---~~~~~~~~~~~~in~~l~~~y~~~l~~ 93 (159)
T PF03755_consen 26 VNHRFLDISIRLPRELSSLEPEIRKLIRKKL-SRGKVEVSIR---VERSSESAVELRINEELAKAYYEALKE 93 (159)
T ss_pred cccCceeeEEeCCHHHHHHHHHHHHHHHHhc-ccceEEEEEE---EEECcccCCCcccCHHHHHHHHHHHHH
Confidence 6899999987333333344455555555544 5899998732 222222344555554323334433333
No 197
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=21.99 E-value=1.6e+02 Score=34.19 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhccc-----CCceEEEeecccc
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD-----FGRVFETGPVFRA 308 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g-----~~rVfeIgp~FR~ 308 (417)
+.|-+.|-+||.++|-.-|..=-+++ -...+++|+.|+-.-.|-.+.+| ..|+-..-||.|.
T Consensus 59 ~eiR~~fl~FF~~~gH~~v~s~pvvp-------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~ 125 (902)
T TIGR03683 59 DEMREAFLSFFEKHGHTRIKRYPVVA-------------RWRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRL 125 (902)
T ss_pred HHHHHHHHHHHHhCCCEEeCCcCcCc-------------CCCCCeeEeecchhhhhHhhcCCCCCCCCCCceeccccccc
Confidence 45566777899999966665433332 11222666666655555455433 3688888899997
Q ss_pred CC----CCCcccccccccceeeechh-----cc-HHHHHHHHHHHH
Q 014856 309 ED----SYTHRHLCEFTGLDVEMEIK-----KH-YSEVMDIVDCLF 344 (417)
Q Consensus 309 E~----s~t~rHl~EFt~lE~e~a~~-----~~-~~d~m~~~e~li 344 (417)
.+ ..|.||++=|.||-- .+|. +. -+|.+.++-+||
T Consensus 126 nDldnVG~t~rH~TfFEMlGn-~sFg~~~~~dYfK~EaI~~a~e~l 170 (902)
T TIGR03683 126 NDIDNVGRTGRHLTCFEMMAH-HAFNYPDKEIYWKDETVEYCFEFL 170 (902)
T ss_pred cccccccCCCCcchhhhhccc-eeeCCCCcccCcHHHHHHHHHHHH
Confidence 43 358999999999974 4454 21 157788888777
No 198
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.45 E-value=1.8e+02 Score=33.58 Aligned_cols=97 Identities=15% Similarity=0.278 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhccc----CCceEEEeeccccC
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD----FGRVFETGPVFRAE 309 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g----~~rVfeIgp~FR~E 309 (417)
+.|-+.|=+||.++|-.-|.+--|++. -+-+++|+.|+-.-.|-.+.|+ ..|.-..-||-|+.
T Consensus 9 ~EiR~~FL~FF~~kgH~~v~s~slVP~-------------nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~N 75 (879)
T COG0013 9 NEIRQKFLDFFEKKGHTVVPSSPLVPR-------------NDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTN 75 (879)
T ss_pred HHHHHHHHHHHHHCCCeecCCCCcCCC-------------CCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccC
Confidence 345566778999999666655444431 2223333333322222222232 34666777888974
Q ss_pred C----CCCcccccccccceeeechhccH--HHHHHHHHHHHH
Q 014856 310 D----SYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDCLFV 345 (417)
Q Consensus 310 ~----s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~ 345 (417)
+ ..|.||++=|.||-- .+|.| | ++.+.++-+|+.
T Consensus 76 DieNVG~T~RHhTfFEMLGN-fSFGd-YFKeeAI~~AwEflT 115 (879)
T COG0013 76 DIDNVGYTARHHTFFEMLGN-FSFGD-YFKEEAIEFAWEFLT 115 (879)
T ss_pred chhhcCccccchhHHHhhhc-CchhH-HHHHHHHHHHHHHHH
Confidence 3 368999999999864 55664 4 466666666664
No 199
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=21.14 E-value=4.4e+02 Score=21.19 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=45.0
Q ss_pred EEEeecCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEec-CCccCCCCceeEEEEEeEEEEeecC
Q 014856 108 LIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-PDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 108 ~vrgr~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~-~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.+....|.+||+.+.. ....+|...|.-|++..+.-..+. .....+...+.+-|....-..+.+|
T Consensus 3 vL~De~G~~I~A~I~~------~~~~~f~~~l~Eg~~y~i~~F~V~~~~~~yr~t~h~y~I~f~~~T~V~~~ 68 (95)
T PF02721_consen 3 VLVDEKGDKIQATIPK------ELVDKFKDSLKEGSWYTISNFTVSPNSGSYRPTDHKYKINFMPNTKVTEI 68 (95)
T ss_pred EEEecCCCEEEEEECH------HHHHHHHhhcccCCEEEeEeEEEEeCCCceeccCCCEEEEECCcCeEEEC
Confidence 3444568899999863 234457788999999999875443 3334455556788888777777777
No 200
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=20.54 E-value=2.4e+02 Score=32.63 Aligned_cols=96 Identities=21% Similarity=0.351 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecC------CCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccc
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 307 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR 307 (417)
+.|-+.|-+||.++|-.-|.+=-+++.. +..|..+|+ ++||-+.+ ....|+-..-+|.|
T Consensus 5 ~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk------~~f~g~~~---------p~~~r~~~~QkCiR 69 (865)
T PRK00252 5 AEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFK------DYFLGQEK---------PPYPRATTSQKCIR 69 (865)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhh------HHhcCCCC---------CCCCCccccccccc
Confidence 4567788899999998888765555411 012233332 22222111 12467788888999
Q ss_pred cCC----CCCcccccccccceeeechhccH--HHHHHHHHHHHHH
Q 014856 308 AED----SYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDCLFVT 346 (417)
Q Consensus 308 ~E~----s~t~rHl~EFt~lE~e~a~~~~~--~d~m~~~e~li~~ 346 (417)
+-+ ..|.||.+=|.||-- ++|.| | +|.+.++=+||..
T Consensus 70 ~nDld~VG~t~rHhTfFEMlGn-~sfgd-YfK~eai~~awe~lt~ 112 (865)
T PRK00252 70 TNDLENVGYTARHHTFFEMLGN-FSFGD-YFKEEAIEWAWELLTS 112 (865)
T ss_pred ccchhhccCCCCchHHHHHhcc-cchhh-hhHHHHHHHHHHHHHH
Confidence 743 358999998988875 56665 4 4677777776655
Done!