Query 014856
Match_columns 417
No_of_seqs 314 out of 1591
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i7f_A Aspartyl-tRNA synthetas 100.0 2E-77 6.9E-82 629.0 34.5 351 54-416 22-429 (548)
2 1eov_A ASPRS, aspartyl-tRNA sy 100.0 5.2E-69 1.8E-73 562.2 35.5 339 61-416 2-366 (487)
3 3nem_A Aspartyl-tRNA synthetas 100.0 2.5E-68 8.6E-73 550.0 31.7 297 93-416 5-319 (438)
4 3bju_A Lysyl-tRNA synthetase; 100.0 9.2E-66 3.2E-70 541.0 23.2 309 76-414 24-359 (521)
5 3m4p_A Ehasnrs, asparaginyl-tR 100.0 5.5E-64 1.9E-68 520.0 29.0 297 89-415 16-340 (456)
6 4ex5_A Lysine--tRNA ligase; st 100.0 3.8E-63 1.3E-67 519.9 23.5 293 60-390 35-357 (529)
7 1wyd_A Hypothetical aspartyl-t 100.0 5.5E-62 1.9E-66 502.0 29.3 292 93-416 5-314 (429)
8 2xgt_A Asparaginyl-tRNA synthe 100.0 2.8E-61 9.7E-66 497.8 27.1 289 94-415 2-319 (435)
9 1e1o_A Lysyl-tRNA synthetase, 100.0 7.1E-62 2.4E-66 509.4 22.7 279 76-390 32-336 (504)
10 1x54_A Asparaginyl-tRNA synthe 100.0 3.8E-61 1.3E-65 496.6 25.8 293 93-414 5-316 (434)
11 1n9w_A Aspartyl-tRNA synthetas 100.0 1.2E-60 4.1E-65 491.2 25.2 284 92-415 2-304 (422)
12 3a74_A Lysyl-tRNA synthetase; 100.0 1E-60 3.4E-65 499.8 24.9 279 76-390 24-327 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 1.3E-57 4.3E-62 484.3 26.0 261 93-389 5-286 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 2.5E-56 8.5E-61 475.3 26.3 253 93-389 4-279 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 4.4E-56 1.5E-60 472.7 25.4 261 93-396 13-293 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 3.2E-42 1.1E-46 345.7 15.0 169 221-416 28-222 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 1.3E-37 4.6E-42 306.2 14.3 157 215-387 1-168 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 2.6E-25 8.7E-30 218.1 1.9 166 159-347 21-206 (290)
19 2rhq_A Phenylalanyl-tRNA synth 99.1 2.4E-10 8.1E-15 112.1 10.5 112 233-349 55-185 (294)
20 1b7y_A Phers, protein (phenyla 99.0 9.9E-10 3.4E-14 110.1 9.3 114 233-349 103-246 (350)
21 12as_A Asparagine synthetase; 98.8 4.3E-08 1.5E-12 95.9 14.0 154 230-389 5-177 (330)
22 3dsq_A Pyrrolysyl-tRNA synthet 98.8 5.2E-09 1.8E-13 102.3 6.4 112 234-347 74-202 (288)
23 1evl_A Threonyl-tRNA synthetas 98.3 1.9E-06 6.5E-11 87.4 8.9 108 229-339 29-155 (401)
24 3pco_A Phenylalanyl-tRNA synth 98.2 2E-06 6.7E-11 85.4 8.2 109 234-349 110-236 (327)
25 1qe0_A Histidyl-tRNA synthetas 98.2 1.3E-06 4.5E-11 88.7 6.8 117 229-346 15-153 (420)
26 1z7m_A ATP phosphoribosyltrans 98.2 9.7E-06 3.3E-10 80.9 12.3 115 229-345 35-168 (344)
27 2i4l_A Proline-tRNA ligase; al 98.2 4.8E-06 1.6E-10 86.1 10.2 104 228-331 65-186 (458)
28 1wu7_A Histidyl-tRNA synthetas 98.1 1.1E-05 3.9E-10 82.4 11.4 102 229-331 19-133 (434)
29 2dq3_A Seryl-tRNA synthetase; 98.1 1.3E-05 4.4E-10 82.2 10.8 114 228-345 170-304 (425)
30 1nyr_A Threonyl-tRNA synthetas 98.1 7.6E-06 2.6E-10 88.1 9.2 108 228-338 269-397 (645)
31 3od1_A ATP phosphoribosyltrans 98.0 2E-05 6.9E-10 80.2 11.3 117 229-346 23-155 (400)
32 1h4v_B Histidyl-tRNA synthetas 98.0 1.6E-05 5.4E-10 80.8 10.1 115 229-345 16-152 (421)
33 1hc7_A Prolyl-tRNA synthetase; 98.0 2.4E-05 8.1E-10 81.4 11.3 114 229-343 43-178 (477)
34 4e51_A Histidine--tRNA ligase; 98.0 1.4E-05 4.7E-10 82.9 9.4 117 229-346 45-182 (467)
35 1htt_A Histidyl-tRNA synthetas 98.0 1.4E-05 5E-10 81.2 8.8 101 229-331 17-135 (423)
36 3net_A Histidyl-tRNA synthetas 98.0 9.1E-06 3.1E-10 84.2 7.1 117 229-346 25-174 (465)
37 1nj8_A Proline-tRNA synthetase 97.9 3.6E-05 1.2E-09 79.6 11.4 110 229-339 37-170 (459)
38 3l4g_A Phenylalanyl-tRNA synth 97.9 2.8E-05 9.4E-10 81.2 9.6 50 297-347 348-398 (508)
39 3rac_A Histidine-tRNA ligase; 97.9 2.3E-05 8E-10 79.0 8.8 117 230-346 37-176 (373)
40 2j3l_A Prolyl-tRNA synthetase; 97.9 3.7E-05 1.2E-09 81.4 10.5 111 228-341 45-175 (572)
41 3lc0_A Histidyl-tRNA synthetas 97.9 3.6E-05 1.2E-09 79.6 10.1 115 230-346 43-175 (456)
42 3uh0_A Threonyl-tRNA synthetas 97.9 3.9E-05 1.3E-09 79.4 10.1 116 228-345 62-199 (460)
43 2dq0_A Seryl-tRNA synthetase; 97.8 3.6E-05 1.2E-09 79.6 8.9 113 229-345 192-325 (455)
44 1qf6_A THRRS, threonyl-tRNA sy 97.8 3.9E-05 1.3E-09 82.6 9.4 109 228-339 269-396 (642)
45 3qne_A Seryl-tRNA synthetase, 97.8 4.4E-05 1.5E-09 79.4 8.9 116 228-345 183-321 (485)
46 1nj1_A PROR, proline-tRNA synt 97.8 3.9E-05 1.3E-09 80.3 8.6 114 229-344 70-207 (501)
47 3a32_A Probable threonyl-tRNA 97.8 5.1E-05 1.7E-09 78.6 9.2 101 229-329 48-169 (471)
48 1ses_A Seryl-tRNA synthetase; 97.8 0.00013 4.6E-09 74.6 12.1 123 216-344 156-299 (421)
49 3vbb_A Seryl-tRNA synthetase, 97.8 9.4E-05 3.2E-09 77.5 11.0 100 228-327 199-328 (522)
50 3err_A Fusion protein of micro 97.7 0.00015 5.1E-09 76.4 11.9 117 228-346 273-410 (536)
51 1wle_A Seryl-tRNA synthetase; 97.7 0.00011 3.8E-09 76.8 10.8 119 228-346 217-357 (501)
52 4g84_A Histidine--tRNA ligase, 97.7 0.00012 4E-09 75.2 10.6 118 228-346 26-159 (464)
53 3ial_A Prolyl-tRNA synthetase; 97.7 7.6E-05 2.6E-09 78.3 8.9 116 228-344 53-191 (518)
54 4g85_A Histidine-tRNA ligase, 97.7 0.00012 4.1E-09 76.6 9.7 118 228-346 79-212 (517)
55 3lss_A Seryl-tRNA synthetase; 97.6 9.3E-05 3.2E-09 76.9 7.5 117 227-346 205-345 (484)
56 1usy_A ATP phosphoribosyltrans 97.6 0.00013 4.4E-09 70.4 8.0 104 236-346 6-119 (275)
57 4hvc_A Bifunctional glutamate/ 97.6 0.00018 6.2E-09 75.5 9.6 117 228-345 59-198 (519)
58 2cja_A Seryl-tRNA synthetase; 97.5 0.00016 5.3E-09 76.0 7.3 115 228-344 229-393 (522)
59 1ati_A Glycyl-tRNA synthetase; 97.3 0.00056 1.9E-08 71.5 8.9 33 229-261 38-72 (505)
60 2du3_A O-phosphoseryl-tRNA syn 97.1 0.00098 3.4E-08 69.9 8.1 70 278-347 181-257 (534)
61 3mf2_A BLL0957 protein; aminoa 97.1 0.00072 2.5E-08 67.2 6.5 118 227-347 61-217 (346)
62 2du7_A O-phosphoseryl-tRNA syn 97.0 0.0026 8.8E-08 66.9 10.7 70 278-347 193-269 (549)
63 3cmq_A Phenylalanyl-tRNA synth 97.0 0.002 6.9E-08 65.8 9.4 87 236-325 53-160 (415)
64 2zt5_A Glycyl-tRNA synthetase; 96.8 0.0015 5.3E-08 70.7 7.4 32 229-260 100-132 (693)
65 2odr_B Phosphoseryl-tRNA synth 96.7 0.0026 9.1E-08 67.6 8.1 70 278-347 200-276 (648)
66 2odr_A Phosphoseryl-tRNA synth 96.7 0.0028 9.5E-08 67.5 8.1 70 278-347 200-276 (665)
67 2odr_D Phosphoseryl-tRNA synth 96.7 0.0029 9.9E-08 67.5 8.1 70 278-347 200-276 (685)
68 2odr_C Phosphoseryl-tRNA synth 96.6 0.0034 1.2E-07 67.1 7.9 70 278-347 200-276 (701)
69 3ikl_A DNA polymerase subunit 96.4 0.0063 2.2E-07 62.8 7.9 106 230-344 104-224 (459)
70 1g5h_A Mitochondrial DNA polym 95.9 0.015 5.1E-07 60.0 7.9 113 230-346 62-216 (454)
71 3ig2_A Phenylalanyl-tRNA synth 95.8 0.036 1.2E-06 51.1 9.4 113 234-347 7-151 (213)
72 3l4g_B Phenylalanyl-tRNA synth 95.5 0.037 1.2E-06 58.9 9.4 112 235-347 395-522 (589)
73 2rhq_B Phenylalanyl-tRNA synth 95.5 0.059 2E-06 59.3 10.9 112 234-347 496-632 (795)
74 3ica_A Phenylalanyl-tRNA synth 95.0 0.084 2.9E-06 48.6 8.9 114 234-347 7-151 (213)
75 1b7y_B Phers, protein (phenyla 91.8 0.56 1.9E-05 51.5 10.0 106 233-347 491-620 (785)
76 3dm3_A Replication factor A; p 85.6 5.6 0.00019 32.3 9.5 35 138-178 66-100 (105)
77 3fhw_A Primosomal replication 84.4 4.2 0.00014 33.8 8.3 55 117-182 49-104 (115)
78 1txy_A Primosomal replication 84.2 3.9 0.00013 33.0 7.9 53 117-177 50-102 (104)
79 1ynx_A Replication factor-A pr 76.0 12 0.0004 30.6 8.2 59 114-178 50-109 (114)
80 3e0e_A Replication protein A; 75.5 19 0.00065 28.5 9.2 49 113-178 47-96 (97)
81 3kf6_A Protein STN1; OB fold, 75.1 18 0.00062 31.6 9.7 54 114-177 75-128 (159)
82 3vdy_A SSB, single-stranded DN 73.4 11 0.00037 30.8 7.4 58 115-178 50-109 (116)
83 3k8a_A Putative primosomal rep 69.2 19 0.00065 29.1 7.8 48 117-176 55-102 (103)
84 1nnx_A Protein YGIW; structura 69.1 7.5 0.00026 32.1 5.4 64 97-176 30-108 (109)
85 3tqy_A Single-stranded DNA-bin 65.8 21 0.00071 31.0 8.0 57 116-178 57-115 (158)
86 3pco_B Phenylalanyl-tRNA synth 65.8 8.7 0.0003 42.1 6.7 111 236-347 494-628 (795)
87 2vw9_A Single-stranded DNA bin 63.7 22 0.00077 29.9 7.6 57 116-178 50-108 (134)
88 3au7_A TIAS, putative uncharac 62.5 34 0.0012 34.4 9.7 51 113-178 312-362 (402)
89 4gs3_A Single-stranded DNA-bin 61.2 44 0.0015 27.2 8.6 56 113-176 48-106 (107)
90 1z9f_A Single-strand binding p 59.5 27 0.00091 30.2 7.4 58 115-178 63-122 (153)
91 3ull_A DNA binding protein; DN 54.9 17 0.00058 30.5 5.2 43 136-178 83-127 (132)
92 3kdf_A Replication protein A 1 50.9 42 0.0014 27.9 6.9 55 101-177 19-89 (121)
93 2pi2_E Replication protein A 1 45.3 57 0.0019 27.9 7.1 55 101-177 40-110 (142)
94 4gop_A Putative uncharacterize 43.0 31 0.0011 28.3 4.9 41 101-153 15-69 (114)
95 1jmc_A Protein (replication pr 41.8 70 0.0024 29.0 7.7 59 113-178 54-113 (246)
96 3ulp_A Single-strand binding p 41.5 40 0.0014 27.7 5.4 43 135-177 69-119 (124)
97 1qvc_A Single stranded DNA bin 41.2 54 0.0018 27.8 6.3 59 114-178 52-115 (145)
98 3kdf_D Replication protein A 3 40.8 1E+02 0.0034 25.4 7.9 54 113-177 57-111 (132)
99 2fxq_A Single-strand binding p 38.7 73 0.0025 29.7 7.4 57 116-178 53-110 (264)
100 3koj_A Uncharacterized protein 37.0 1.5E+02 0.005 24.0 8.0 54 114-173 52-107 (108)
101 3eiv_A Single-stranded DNA-bin 36.5 1.1E+02 0.0039 27.5 8.0 55 114-174 52-108 (199)
102 1se8_A Single-strand binding p 36.4 93 0.0032 29.8 7.8 57 116-178 53-112 (301)
103 3afp_A Single-stranded DNA-bin 35.9 1.1E+02 0.0038 26.6 7.6 53 114-172 52-106 (168)
104 2kqr_A Asparaginyl-tRNA synthe 35.3 13 0.00043 30.9 1.2 24 19-42 54-77 (113)
105 3en2_A Probable primosomal rep 34.7 1.4E+02 0.0047 23.9 7.4 46 117-173 50-95 (101)
106 4gop_C Putative uncharacterize 34.7 60 0.0021 32.5 6.5 60 113-178 48-108 (444)
107 1se8_A Single-strand binding p 33.6 87 0.003 30.0 7.1 43 135-177 189-233 (301)
108 2fxq_A Single-strand binding p 33.1 93 0.0032 28.9 7.1 42 137-178 187-230 (264)
109 1ou8_A Stringent starvation pr 33.0 40 0.0014 27.8 3.8 53 232-289 8-61 (111)
110 1yfn_A Stringent starvation pr 32.7 43 0.0015 27.9 4.1 53 232-289 9-62 (118)
111 3lgj_A Single-stranded DNA-bin 32.5 1.3E+02 0.0043 26.3 7.4 44 135-178 86-135 (169)
112 4gop_B Putative uncharacterize 32.2 1.3E+02 0.0044 24.9 7.2 55 113-177 62-116 (136)
113 4dam_A Single-stranded DNA-bin 30.0 1.1E+02 0.0038 25.4 6.3 40 135-174 77-117 (128)
114 2k50_A Replication factor A re 29.3 57 0.0019 26.1 4.3 54 113-178 52-105 (115)
115 1ou9_A Stringent starvation pr 29.2 48 0.0016 28.0 3.8 53 232-289 8-61 (129)
116 1v1q_A Primosomal replication 27.4 92 0.0031 26.3 5.4 55 116-178 66-120 (134)
117 2kbn_A Conserved protein; nucl 25.3 1.4E+02 0.0047 23.9 5.9 35 137-178 59-94 (109)
118 1eqq_A Single stranded DNA bin 23.9 43 0.0015 29.6 2.8 43 135-177 68-115 (178)
119 3pgz_A Single-stranded DNA-bin 20.4 1.3E+02 0.0043 27.1 5.1 43 136-178 90-138 (193)
No 1
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=2e-77 Score=629.04 Aligned_cols=351 Identities=44% Similarity=0.690 Sum_probs=298.1
Q ss_pred ccccCCCcCCccccchhhhhccCCCCCCCccccccCcceeeecccccccCCcEEEEEee-----------------cCce
Q 014856 54 IEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGR-----------------RVST 116 (417)
Q Consensus 54 ~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~G~~V~vrgr-----------------~~~~ 116 (417)
++++|.++++||++|+.|+|.. ..++++|+.|++|..++.|+.|+|+|| ++++
T Consensus 22 ~~~~~~~~~~yg~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~ 91 (548)
T 3i7f_A 22 KTPELVSGENFKVMPMHQSQPC----------YKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYT 91 (548)
T ss_dssp BCCCCCCCSSEEECCCCSSCGG----------GCCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECSSEEEEEEEETTEE
T ss_pred ccccchhhhhcCcCcccccccc----------ccCCCceEEhhhcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECCee
Confidence 4567889999999999987721 236789999999998999999999999 6779
Q ss_pred EEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCC-ceeEEEEEeEEEEeecC-CCCCcccccccchHHH
Q 014856 117 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAE 194 (417)
Q Consensus 117 iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~-t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~ 194 (417)
||||+..+. .++++|++|++.|+.||+|.|+|+|..++.+++++ +|++||++++|+|||+| .+||++++|+++++.+
T Consensus 92 iQ~v~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~ 170 (548)
T 3i7f_A 92 CQALVMKSE-TISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSV 170 (548)
T ss_dssp EEEEEECSS-SSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHH
T ss_pred EEEEEECCC-ccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccc
Confidence 999998743 36789999999999999999999999987777676 48899999999999999 8999999999887654
Q ss_pred HHhh--------------------------------------hhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHH
Q 014856 195 IEKA--------------------------------------SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 236 (417)
Q Consensus 195 ~~~~--------------------------------------~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i 236 (417)
.++. ......+..+++++||+|||||||++.++++|++||.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i 250 (548)
T 3i7f_A 171 FKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSAC 250 (548)
T ss_dssp HHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHH
Confidence 3321 00112345689999999999999999999999999999
Q ss_pred HHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCccc
Q 014856 237 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRH 316 (417)
Q Consensus 237 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rH 316 (417)
+++||+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||++|++|++|||+||||||||+++|+||
T Consensus 251 ~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RH 330 (548)
T 3i7f_A 251 CGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRH 330 (548)
T ss_dssp HHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSC
T ss_pred HHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCCC
Q 014856 317 LCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI 396 (417)
Q Consensus 317 l~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~~~ 396 (417)
|||||||||||+|.++|+|+|+++|+||+++++.+.++|..++..++..++...+++ .||+||||.||+++|++.|+++
T Consensus 331 l~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~g~~~ 409 (548)
T 3i7f_A 331 LTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRASGETI 409 (548)
T ss_dssp CSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHTTCCC
T ss_pred chhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHcCCCC
Confidence 999999999999986699999999999999999999999999988888888777776 7999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhc
Q 014856 397 DPLGDLNTESERKLGQLVLE 416 (417)
Q Consensus 397 ~~~~dl~te~E~~L~~~vke 416 (417)
+|++||++++|++|+++|.+
T Consensus 410 ~~~~dl~~~~e~~l~~~i~~ 429 (548)
T 3i7f_A 410 GDYDDFTTPQEVKLGELIKA 429 (548)
T ss_dssp CTTCCCCHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHH
Confidence 99999999999999999865
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=5.2e-69 Score=562.19 Aligned_cols=339 Identities=49% Similarity=0.763 Sum_probs=299.6
Q ss_pred cCCccccchhhhh--ccCCCCCCCccccccCcceeeecccccc-cCCcEEEEEee------------------cCceEEE
Q 014856 61 ANNYGDVPLQELQ--SVNDPQTGKWSEAVSGREWTEVGALNGS-LKDQEVLIRGR------------------RVSTVQC 119 (417)
Q Consensus 61 ~~~Yg~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~l~~~-~~G~~V~vrgr------------------~~~~iQ~ 119 (417)
+++||++|+.|++ . .+.++++.|++|... +.|++|+|+|| +++.|||
T Consensus 2 ~~~yG~~~~~~s~~~~------------~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQv 69 (487)
T 1eov_A 2 KDNYGKLPLIQSRDSD------------RTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQG 69 (487)
T ss_dssp CSSEEECCCCCCCGGG------------CCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred Cccccccccccccccc------------ccccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEE
Confidence 5689999998775 3 245678889998776 88999999999 5678999
Q ss_pred EEeeCCCC-ccHHHHHHHHcCCCCcEEEEEEEEecCCccCCC-CceeEEEEEeEEEEeecC-CCCCcccccccchHHHHH
Q 014856 120 LATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG-ATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIE 196 (417)
Q Consensus 120 v~~~~~~~-~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~-~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~ 196 (417)
|++.+... ++++++++++.|+.||+|.|+|+|..++.+.++ .+|++||++++|.|||+| ++||+++++.++++.+.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~- 148 (487)
T 1eov_A 70 LVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA- 148 (487)
T ss_dssp EEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHH-
T ss_pred EEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccc-
Confidence 99864222 467888999999999999999999987654433 458899999999999999 89999988765432110
Q ss_pred hhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCC
Q 014856 197 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 276 (417)
Q Consensus 197 ~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~ 276 (417)
....+++++.|+||+|||||||++.++++|++||.|+++||+||.++||+||+||+|+++.++|||++|.++|||+
T Consensus 149 ----~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~ 224 (487)
T 1eov_A 149 ----EAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG 224 (487)
T ss_dssp ----HHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE
T ss_pred ----cccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc
Confidence 1124566899999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhH
Q 014856 277 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCK 356 (417)
Q Consensus 277 ~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~ 356 (417)
++||+||||||+|++|++|++|||+||||||||+++++||+|||||||+||+|.++|+|+|+++|+||+++++.+.++|.
T Consensus 225 ~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~ 304 (487)
T 1eov_A 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 304 (487)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999866999999999999999999999999
Q ss_pred HHHHHhhhcCCCcccCCCC--CCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 014856 357 KELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 416 (417)
Q Consensus 357 ~~l~~~~~~~~~~~~~~~~--p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E~~L~~~vke 416 (417)
.+|..+...++...+++.. ||+||+|.||+++|++.|++++|++|+++++|+.||+++.+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~ 366 (487)
T 1eov_A 305 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRD 366 (487)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHH
Confidence 9998888777776677665 89999999999999999999999999999999999998754
No 3
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.5e-68 Score=550.04 Aligned_cols=297 Identities=34% Similarity=0.514 Sum_probs=270.1
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|++|...+.|++|+|+|| +++.||||++.+ .++++++++++.|+.||+|.|+|+|..++
T Consensus 5 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~V~V~G~v~~~~ 82 (438)
T 3nem_A 5 HYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNFTP 82 (438)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEECT
T ss_pred EEHHHcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCC--cCCHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 56788888889999999999 667899999864 24677888999999999999999998764
Q ss_pred ccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHh
Q 014856 156 VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 234 (417)
Q Consensus 156 ~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs 234 (417)
+.+|++||++++|.|||+| .+||+++++. ...+.++|++|||||||++.++++|++||
T Consensus 83 ----~~~~~~el~~~~i~vl~~~~~~lP~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs 141 (438)
T 3nem_A 83 ----KAKLGFEILPEKIVVLNRAETPLPLDPTGK-----------------VKAELDTRLDNRFMDLRRPEVMAIFKIRS 141 (438)
T ss_dssp ----TSTTSEEEEEEEEEEEECBCSSCSSCTTSS-----------------SCCCHHHHHHTHHHHTTSHHHHHHHHHHH
T ss_pred ----CCCCcEEEEEEEEEEEecCCCCCCCCcccc-----------------ccCCHHHHhhchHHHhcCHHHHHHHHHHH
Confidence 2347899999999999999 8999987652 12688999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCc
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 314 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~ 314 (417)
.|+++||+||.++||+||+||+|+++++|||++.|.++|||.++||+||||||||+++++|++|||+||||||||++++.
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~ 221 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTT 221 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCT
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCC
Q 014856 315 RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 394 (417)
Q Consensus 315 rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~ 394 (417)
|||||||||||||+|.++|+|+|+++|+||+++++.+.+.|..++..++..+. .+..||+||||.||+++|++.|+
T Consensus 222 RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~----~~~~pf~rity~eai~~l~~~g~ 297 (438)
T 3nem_A 222 RHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE----EPKLPFPRVSYDKALEILGDLGK 297 (438)
T ss_dssp TCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC----CCCSSCCEEEHHHHHHHHHHTTC
T ss_pred ccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc----cCCCCceEEEHHHHHHHHHHcCC
Confidence 99999999999999997799999999999999999999999888877665431 12468999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHhhc
Q 014856 395 EIDPLGDLNTESERKLGQLVLE 416 (417)
Q Consensus 395 ~~~~~~dl~te~E~~L~~~vke 416 (417)
+++|++||++++|++|++++.+
T Consensus 298 ~~~~~~dl~~~~e~~l~~~~~~ 319 (438)
T 3nem_A 298 EIPWGEDIDTEGERLLGKYMME 319 (438)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHHHHhhh
Confidence 9999999999999999999864
No 4
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=9.2e-66 Score=541.03 Aligned_cols=309 Identities=20% Similarity=0.281 Sum_probs=250.6
Q ss_pred CCCCCCCccccccCcce-eeecccc--cccCCcEEEEEee------------------cCceEEEEEeeCCCCccH-HHH
Q 014856 76 NDPQTGKWSEAVSGREW-TEVGALN--GSLKDQEVLIRGR------------------RVSTVQCLATVKPDSVSK-EMV 133 (417)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~--~~~~G~~V~vrgr------------------~~~~iQ~v~~~~~~~~~~-~~~ 133 (417)
.|||||+|.++++...+ ..+.++. ....|+.|+|+|| +++.||||++.+.. .++ .+.
T Consensus 24 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~-~~~~~~~ 102 (521)
T 3bju_A 24 EDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEFI 102 (521)
T ss_dssp CCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGS-SCHHHHH
T ss_pred CCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCcc-CCHHHHH
Confidence 48999999999887554 2333442 3456889999999 45789999986421 133 344
Q ss_pred HHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhh
Q 014856 134 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 212 (417)
Q Consensus 134 ~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 212 (417)
++.+.|+.||+|.|+|+|..++ +|++||++++|.|||+| .+||++..+ ..++++
T Consensus 103 ~~~~~l~~gd~V~V~G~v~~t~------~ge~ei~~~~i~~l~~~~~~lP~~~~~-------------------~~~~e~ 157 (521)
T 3bju_A 103 HINNKLRRGDIIGVQGNPGKTK------KGELSIIPYEITLLSPCLHMLPHLHFG-------------------LKDKET 157 (521)
T ss_dssp HHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCCSCCCCC-----------------------CCHHH
T ss_pred HHHhcCCCCCEEEEEEEEEecC------CCCEEEEEeEEEEeecCCCCCCCcccc-------------------ccChhh
Confidence 4567899999999999998753 57899999999999999 899986432 368899
Q ss_pred hccccceeee-chhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHH
Q 014856 213 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 289 (417)
Q Consensus 213 Rl~~R~LdlR-~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 289 (417)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.++++|++|.+ +|||.++||+||||||||
T Consensus 158 r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk 237 (521)
T 3bju_A 158 RYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHK 237 (521)
T ss_dssp HHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHH
Confidence 9999999999 5999999999999999999999999999999999997654445789988 789999999999999999
Q ss_pred HhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCc
Q 014856 290 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFE 369 (417)
Q Consensus 290 ~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 369 (417)
+++++||+||||||||||||++++ ||||||||||+||+|++ |+|+|+++|+||+++++.+.+.+...+...+...+..
T Consensus 238 ~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~ 315 (521)
T 3bju_A 238 MLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAY 315 (521)
T ss_dssp HHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCE
T ss_pred HHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCceEEecccccccccc
Confidence 999999999999999999999966 99999999999999996 9999999999999999999876532221111111222
Q ss_pred ccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHH-HHHHHHh
Q 014856 370 PLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE-RKLGQLV 414 (417)
Q Consensus 370 ~~~~~~p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E-~~L~~~v 414 (417)
.+++..||+||||.||++.+ .|+++++++||+++++ ..|.++.
T Consensus 316 ~~d~~~pf~rit~~eai~~~--~g~~~~~~~~l~~~~~~~~l~~~~ 359 (521)
T 3bju_A 316 DVDFTPPFRRINMVEELEKA--LGMKLPETNLFETEETRKILDDIC 359 (521)
T ss_dssp EEECCSSCEEEEHHHHHHHH--HTSCCCCGGGTTSHHHHHHHHHHH
T ss_pred eeccCCCcccccHHHHHHHH--hCCCCCccccCCcHHHHHHHHHHH
Confidence 45677899999999999854 4788877778887653 4454443
No 5
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=5.5e-64 Score=520.02 Aligned_cols=297 Identities=22% Similarity=0.359 Sum_probs=248.8
Q ss_pred CcceeeecccccccCCcEEEEEee------------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEE
Q 014856 89 GREWTEVGALNGSLKDQEVLIRGR------------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 150 (417)
Q Consensus 89 ~~~~~~i~~l~~~~~G~~V~vrgr------------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~ 150 (417)
..+++.|+++ .++.|+.|+|+|| +++.||||++.+. .++. . .+..|+.||+|.|+|+
T Consensus 16 ~~~~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~--~~~~-~-~~~~l~~g~~V~V~G~ 90 (456)
T 3m4p_A 16 TPIVCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE--LCEP-E-KVKLLTRECSLEITGR 90 (456)
T ss_dssp CCCCEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT--TTCH-H-HHTTCCTTCEEEEEEE
T ss_pred cceEEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc--chhh-H-HhhcCCCccEEEEEeE
Confidence 4577889999 4788999999999 4568999998632 2221 2 3568999999999999
Q ss_pred EecCCccC---CCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechh
Q 014856 151 VSVPDVEI---KGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 225 (417)
Q Consensus 151 v~~~~~~~---~~~t-~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~ 225 (417)
|..++... +.+| |++||++++|+||++| .++|.... ...++|+|++|||||||++.
T Consensus 91 v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~-------------------~~~~~e~r~~~R~LdlR~~~ 151 (456)
T 3m4p_A 91 LNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIIN-------------------KDSSIPQKMQNRHIVIRSEH 151 (456)
T ss_dssp EECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSC-------------------TTCCHHHHHHTHHHHTTSHH
T ss_pred EEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCccccc-------------------ccCCHHHHhhchHHhhhcHH
Confidence 98754321 1223 8899999999999999 55553221 13688999999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeec
Q 014856 226 NQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPV 305 (417)
Q Consensus 226 ~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~ 305 (417)
++++|++||.|+++||+||.++||+||+||+|+++++|||+++|.++|||.++||+||||||||++++ |++|||+||||
T Consensus 152 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~ 230 (456)
T 3m4p_A 152 TQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSS 230 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccccccCCCcccccCHHHHHHHHHh-ccCcEEEEEhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 69999999999
Q ss_pred cccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHH
Q 014856 306 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 385 (417)
Q Consensus 306 FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eA 385 (417)
||||+++|+|||||||||||||+|.+ |+|+|+++|+||+++++.+.+++...+..+...+. ....||+||||.||
T Consensus 231 FR~E~~~t~rH~pEFtmlE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~----~~~~pf~rity~eA 305 (456)
T 3m4p_A 231 YRAEQSRTVRHLAEYLHLEAELPFIS-FEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----LPTRPFKRMTYADA 305 (456)
T ss_dssp ECCCSCCCSSCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC----CCCSSCEEEEHHHH
T ss_pred eecCCCCCCcchHHHHHhHHHHhcCC-HHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccc----cCCCCCeEeeHHHH
Confidence 99999999999999999999999997 99999999999999999999888776655443221 12458999999999
Q ss_pred HHHHHHcCCC-----CCCCCCCCcHHHHHHHHHhh
Q 014856 386 VQMLKDAGVE-----IDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 386 i~~L~~~g~~-----~~~~~dl~te~E~~L~~~vk 415 (417)
+++|++.|++ ..|++||++++|++|++.++
T Consensus 306 i~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~~ 340 (456)
T 3m4p_A 306 IKYCNDHGILNKDKPFEYGEDISEKPERQMTDEIG 340 (456)
T ss_dssp HHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCccccCcchHHHHHHHHHHHHHHHhC
Confidence 9999998864 35889999999999998864
No 6
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=3.8e-63 Score=519.88 Aligned_cols=293 Identities=23% Similarity=0.275 Sum_probs=238.4
Q ss_pred CcCCccccchhhhh---ccCCCCCCCccccccCccee-eecccccc---cCCcEEEEEee-----------------cCc
Q 014856 60 LANNYGDVPLQELQ---SVNDPQTGKWSEAVSGREWT-EVGALNGS---LKDQEVLIRGR-----------------RVS 115 (417)
Q Consensus 60 ~~~~Yg~~~~~~~~---~~~~~~p~~~~~~~~~~~~~-~i~~l~~~---~~G~~V~vrgr-----------------~~~ 115 (417)
+++.|...|...++ +.++||||+|.++++...+. ...++... ..|+.|+|+|| +++
T Consensus 35 ~~~~~~~~r~~k~~~l~~~g~~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg 114 (529)
T 4ex5_A 35 DENQIVAERRDKLRALRDQGIAYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG 114 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCSSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe
Confidence 34445555544333 23569999999988764431 22222211 23899999999 567
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHH
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAE 194 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~ 194 (417)
.||||++.+ .++++++++++.|+.||+|.|+|+|..+ .+|++||++++|.|||+| .+||++..+
T Consensus 115 ~iQvv~~~~--~~~~~~~~~~~~l~~gd~V~V~G~v~~t------~~gelel~~~~i~vLs~a~~plP~k~~~------- 179 (529)
T 4ex5_A 115 QIQFFVTPA--DVGAETYDAFKKWDLGDIVAARGVLFRT------NKGELSVKCTQLRLLAKALRPLPDKFHG------- 179 (529)
T ss_dssp EEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEEC------TTSCEEEEEEEEEEEECCSSCCCC-----------
T ss_pred eEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEEc------CCCcEEEEEEEEEEEecCCCCCCccccC-------
Confidence 999999863 2456777888999999999999999864 357899999999999999 899987543
Q ss_pred HHhhhhcCCCCCCCChhhhccccceeee-chhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCc--ceeee
Q 014856 195 IEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRL 271 (417)
Q Consensus 195 ~~~~~~~~~~~~~~~~etRl~~R~LdlR-~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga--~~F~v 271 (417)
..++++|+++|||||| ++.++++|++||.|+++||+||+++||+||+||+|+++ +||| .+|.+
T Consensus 180 ------------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~--~gGA~a~pF~t 245 (529)
T 4ex5_A 180 ------------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPI--PGGAAAKPFVT 245 (529)
T ss_dssp --------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS--CCSSSSCCCEE
T ss_pred ------------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc--CCCCccccccc
Confidence 2678999999999998 59999999999999999999999999999999999854 3444 68976
Q ss_pred --ccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhH
Q 014856 272 --DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 272 --~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 349 (417)
++|+.++||+||||||||+|+++||+|||+||||||||+++ .|||||||||||||+|++ |+|+|+++|+||+++++
T Consensus 246 ~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~~ 323 (529)
T 4ex5_A 246 HHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTD-YRWLMDFTERLIRQAAV 323 (529)
T ss_dssp EETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHH
T ss_pred ccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCC-HHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999984 799999999999999996 99999999999999999
Q ss_pred HhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 014856 350 SLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 390 (417)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~ 390 (417)
.+.+.+.. .+....+++..||+||||.||++++.
T Consensus 324 ~v~~~~~~-------~~~~~~id~~~pf~Rity~eAi~~~~ 357 (529)
T 4ex5_A 324 DALGTATI-------QYQGRELDLAQPFHRLTITQAIQKYA 357 (529)
T ss_dssp HHHSCSEE-------EETTEEEETTSCCEEEEHHHHHHHHC
T ss_pred HHhCcCce-------ecCceeeccCCCceEEEHHHHHHHHh
Confidence 99875421 22334567788999999999998654
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-62 Score=502.04 Aligned_cols=292 Identities=32% Similarity=0.518 Sum_probs=261.8
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|++|...+.|+.|+|+|| +++.||||++.+. +++++++.|+.||+|.|+|+|..++
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~~ 79 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKADK 79 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEECS
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEecC
Confidence 44677776788999999999 5778999997532 3567778999999999999998764
Q ss_pred ccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHh
Q 014856 156 VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 234 (417)
Q Consensus 156 ~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs 234 (417)
+.+|++||++++|.|||+| ++||++..+. ...+.|+|++|||||||++.++++|++||
T Consensus 80 ----~~~~~~el~~~~~~vl~~~~~~~P~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs 138 (429)
T 1wyd_A 80 ----RAPRGIELHAEEITLLSKAKAPLPLDVSGK-----------------VKADIDTRLRERVLDLRRQEMQAVIKIQS 138 (429)
T ss_dssp ----SSGGGEEEEEEEEEEEECCCSSCSSCSSSC-----------------CCCCHHHHHHTHHHHHTSHHHHHHHHHHH
T ss_pred ----CCCccEEEEEeEEEEeccCCCCCCCCcccc-----------------ccCChhHhhhccceeccCHHHHHHHHHHH
Confidence 2357899999999999999 9999876531 12678999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCc
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 314 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~ 314 (417)
.|++++|+||.++||+||+||+|+.+++||++++|.++|+|.++||+||||||+|+ +++|++|||+||||||+|++++.
T Consensus 139 ~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~ 217 (429)
T 1wyd_A 139 LALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTP 217 (429)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSS
T ss_pred HHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999 77789999999999999999889
Q ss_pred ccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCC
Q 014856 315 RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 394 (417)
Q Consensus 315 rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~ 394 (417)
||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+++.++..++. +..||+||||.||++++.+.|+
T Consensus 218 RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~----l~~pf~rity~eA~~~~~~~g~ 292 (429)
T 1wyd_A 218 FHLAEFISMDVEMAFAD-YNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE----VKIPIKRLKYTEAIEILRSKGY 292 (429)
T ss_dssp SCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCC----CCSSCEEEEHHHHHHHHHHSSC
T ss_pred cccceeeEeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccchhhhhhccccccc----CCCCccEEEHHHHHHHHHhcCC
Confidence 99999999999999996 999999999999999999999998888877654332 2469999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHhhc
Q 014856 395 EIDPLGDLNTESERKLGQLVLE 416 (417)
Q Consensus 395 ~~~~~~dl~te~E~~L~~~vke 416 (417)
++.|++||++++|++|++.+.+
T Consensus 293 ~~~~~~~l~~~~e~~l~~~~~~ 314 (429)
T 1wyd_A 293 NIKFGDDIGTPELRILNEELKE 314 (429)
T ss_dssp CCCTTSCCCHHHHHHHHHHHCC
T ss_pred CcccCcccCcHHHHHHHHHhcc
Confidence 8899999999999999998753
No 8
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=2.8e-61 Score=497.84 Aligned_cols=289 Identities=24% Similarity=0.370 Sum_probs=238.6
Q ss_pred eecccccccCCcEEEEEee------------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 94 EVGALNGSLKDQEVLIRGR------------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 94 ~i~~l~~~~~G~~V~vrgr------------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+|+++. .+.|+.|+|+|| +++.||||++.+ .++. ++. ..|+.||+|.|+|+|..++
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~---~~~~-~~~-~~l~~~~~v~v~G~v~~~~ 75 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK---LCQT-YDA-LTVNTECTVEIYGAIKEVP 75 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGG---GGSS-HHH-HHCCTTCEEEEEEEEEECC
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCc---chhH-HHH-hcCCCCCEEEEEEEEEecC
Confidence 456664 578999999999 457899999842 1221 222 3699999999999998754
Q ss_pred ccCCCCceeEEEEEeEEEEeecCCC---CCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 156 VEIKGATQQVEVQIKKLYCVSRAAK---TPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 156 ~~~~~~t~~~El~~~~i~vls~~~~---lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
.. ++.+|++||++++|.||+++.+ .|+..+ ..+.|+|++|||||||++.++++|++
T Consensus 76 ~~-~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~--------------------~~~~e~r~~~R~Ldlr~~~~~~~~r~ 134 (435)
T 2xgt_A 76 EG-KEAPNGHELIADFWKIIGNAPPGGIDNVLNE--------------------EASVDKMLDNRHLVIRGENAAALLRL 134 (435)
T ss_dssp -------TTEEEEEEEEEEEECCCTTHHHHHCC----------------------CCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC-cCCCCcEEEEEEEEEEeecCCCccccccccc--------------------CCCHHHHhhCeeeeecCHHHHHHHHH
Confidence 22 2456889999999999998621 222111 27889999999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 312 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~ 312 (417)
||.|+++||+||.++||+||+||+|++++++||+++|.++|||+++||+||||||||++++ |++||||||||||||+++
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~ 213 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSR 213 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeeccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCC
Confidence 9999999999999999999999999998999999999999999999999999999999885 799999999999999999
Q ss_pred CcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHH--HHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 014856 313 THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKK--ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 390 (417)
Q Consensus 313 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~--~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~ 390 (417)
++|||||||||||||+|.+ |+|+|+++|+||+++++.+.+.+.. .+..++..+. ....||+||||.||+++|+
T Consensus 214 t~RH~~EFT~lE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~pf~rity~ea~~~~~ 288 (435)
T 2xgt_A 214 TRRHLAEYAHVEAECPFIT-LDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQ 288 (435)
T ss_dssp CTTCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCC----CCCSSCEEEEHHHHHHHHH
T ss_pred ccccccceeEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhccccchhhhhhcccccc----ccCCCceEEEHHHHHHHHH
Confidence 9999999999999999996 9999999999999999999876543 2333322111 1135899999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHHHHhh
Q 014856 391 DAGVE------IDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 391 ~~g~~------~~~~~dl~te~E~~L~~~vk 415 (417)
..|+. +.+++|+++++|++|++.+.
T Consensus 289 ~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 319 (435)
T 2xgt_A 289 EHNVENEFGNTFTYGEDIAEAAERFMTDTIN 319 (435)
T ss_dssp HTTCBCTTSCBCCTTSCCCHHHHHHHHHHHT
T ss_pred hcCCCcccccccchhhHHHHHHHHHHHHhcC
Confidence 88764 45778999999999988764
No 9
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=7.1e-62 Score=509.42 Aligned_cols=279 Identities=20% Similarity=0.316 Sum_probs=229.0
Q ss_pred CCCCCCCccccccCcce-eeeccccc-cc--CCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHH
Q 014856 76 NDPQTGKWSEAVSGREW-TEVGALNG-SL--KDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVR 134 (417)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~~-~~--~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~ 134 (417)
.+||||+|.++++..+. ....+++. .. .|+.|+|+|| +++.||||++.+. ++++.++
T Consensus 32 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~--~~~~~~~ 109 (504)
T 1e1o_A 32 GVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDS--LPEGVYN 109 (504)
T ss_dssp SCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTT--SSTTHHH
T ss_pred CCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCc--CCHHHHH
Confidence 48999999988765432 11222211 11 2889999999 5679999998642 3445555
Q ss_pred -HHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhh
Q 014856 135 -FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 212 (417)
Q Consensus 135 -~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 212 (417)
.++.|+.||+|.|+|+|..++ +|++||++++|.|||+| .+||....+ .++.++
T Consensus 110 ~~~~~l~~g~~V~V~G~v~~~~------~ge~ei~~~~i~vl~~a~~plP~k~~~-------------------~~~~e~ 164 (504)
T 1e1o_A 110 DQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFHG-------------------LQDQEV 164 (504)
T ss_dssp HTGGGCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCC--------------------------TTH
T ss_pred HHHhcCCCCCEEEEEEEEEecC------CceEEEEEEEEEEecccCCCCCccccC-------------------CcChhh
Confidence 668899999999999998743 47899999999999999 899964322 267899
Q ss_pred hccccceeee-chhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHH
Q 014856 213 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 289 (417)
Q Consensus 213 Rl~~R~LdlR-~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 289 (417)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++++|.+ ++||.++||+||||||||
T Consensus 165 r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk 244 (504)
T 1e1o_A 165 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLK 244 (504)
T ss_dssp HHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHHH
Confidence 9999999996 7999999999999999999999999999999999996543444679998 789999999999999999
Q ss_pred HhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCc
Q 014856 290 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFE 369 (417)
Q Consensus 290 ~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 369 (417)
+|+++|++||||||||||||+++ .||||||||||+||+|.+ |+|+|+++|+||+++++.+.++|. +. +...
T Consensus 245 ~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d-~~dlm~l~E~li~~~~~~v~~~~~--i~-----~~~~ 315 (504)
T 1e1o_A 245 RLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEVLGTTK--VT-----YGEH 315 (504)
T ss_dssp HHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSSSE--EE-----ETTE
T ss_pred HHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCCce--ee-----eCCE
Confidence 99999999999999999999986 599999999999999996 999999999999999999987763 21 2223
Q ss_pred ccCCCCCCceeeHHHHHHHHH
Q 014856 370 PLKYKPKTLRLTFEEGVQMLK 390 (417)
Q Consensus 370 ~~~~~~p~~rit~~eAi~~L~ 390 (417)
.+++..||+||||.||++++.
T Consensus 316 ~i~~~~pf~rity~eAi~~~~ 336 (504)
T 1e1o_A 316 VFDFGKPFEKLTMREAIKKYR 336 (504)
T ss_dssp EEETTSCCEEEEHHHHHHHHS
T ss_pred eeccCCCceEEeHHHHHHHHc
Confidence 456777999999999998764
No 10
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=3.8e-61 Score=496.61 Aligned_cols=293 Identities=27% Similarity=0.407 Sum_probs=260.3
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.|++|...+.|++|+|+|| +++.||||++.+ .++++++++++.|+.||+|.|+|+|..++
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~v~v~G~v~~~~ 82 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKN--VVGEETFEKAKKLGRESSVIVEGIVKADE 82 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEECT
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEecC
Confidence 45677776788999999999 567899999753 24567788889999999999999998764
Q ss_pred ccCCCCceeEEEEEeEEEEeecCCCCCc--ccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHH
Q 014856 156 VEIKGATQQVEVQIKKLYCVSRAAKTPI--TIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 233 (417)
Q Consensus 156 ~~~~~~t~~~El~~~~i~vls~~~~lP~--~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~r 233 (417)
+.+|++||++++|.|||+|++||+ +... .+.|+|++|||||||++.++++|++|
T Consensus 83 ----~~~~~~el~~~~~~vl~~~~~~P~~~~~~~--------------------~~~e~r~~~R~Ldlr~~~~~~~~~~r 138 (434)
T 1x54_A 83 ----RAPGGAEVHVEKLEVIQAVSEFPIPENPEQ--------------------ASPELLLDYRHLHIRTPKASAIMKVK 138 (434)
T ss_dssp ----TSGGGEEEEEEEEEEEECCSCCSSCSSGGG--------------------SCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred ----CCCccEEEEEeEEEEeecCCCCCCcccccC--------------------CCHHHhhhceeeeecCHHHHHHHHHH
Confidence 235789999999999999988998 4331 67899999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCC
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 313 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t 313 (417)
|.|++.||+||.++||+||+||+|+.+.+||++++|.++|+|.++||+||||||+|+ +++|++|||+||||||+|++++
T Consensus 139 s~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~ 217 (434)
T 1x54_A 139 ETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRT 217 (434)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCC
Confidence 999999999999999999999999999899999999999999999999999999998 6788999999999999999988
Q ss_pred cccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 014856 314 HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 393 (417)
Q Consensus 314 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g 393 (417)
.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+|+.++..++.-. .+..||+||||.||++++++.|
T Consensus 218 ~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~-~~~~pf~rity~ea~~~~~~~g 295 (434)
T 1x54_A 218 RRHLTEFWHLELEAAWMD-LWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLK-NTEPPFPRISYDEAIDILQSKG 295 (434)
T ss_dssp SSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHH-TCCSSCCEEEHHHHHHHHHHTT
T ss_pred cccccEEEEeeEEEcCCC-HHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccccccc-ccCCCCcEEEHHHHHHHHHhcC
Confidence 999999999999999996 99999999999999999999988888876654332100 1346999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHh
Q 014856 394 VEIDPLGDLNTESERKLGQLV 414 (417)
Q Consensus 394 ~~~~~~~dl~te~E~~L~~~v 414 (417)
+++.|++||++++|++|++.+
T Consensus 296 ~~~~~~~dl~~~~e~~l~~~~ 316 (434)
T 1x54_A 296 VNVEWGDDLGADEERVLTEEF 316 (434)
T ss_dssp CCCCTTCCCCHHHHHHHHTTC
T ss_pred CCcccCCccChHHHHHHHHHh
Confidence 988999999999999998754
No 11
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=1.2e-60 Score=491.17 Aligned_cols=284 Identities=34% Similarity=0.461 Sum_probs=202.9
Q ss_pred eeeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCC-CCcEEEEEEEEec
Q 014856 92 WTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVSV 153 (417)
Q Consensus 92 ~~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~-~es~V~V~G~v~~ 153 (417)
|+.|++|. ++.|++|+|+|| +++.||||++. +.|+ .||+|.|+|+|..
T Consensus 2 ~~~~~~l~-~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 2 RVLVRDLK-AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp BCCGGGGG-GCTTSEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEEE
T ss_pred eEEHHHHH-hcCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEEe
Confidence 35567777 788999999999 56789999873 4699 9999999999988
Q ss_pred CCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 154 PDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 154 ~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
++. .+|++||++++|.|||+| ++||++..+. .+..+.|+|++|||||||++.++++|++
T Consensus 68 ~~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~----------------~~~~~~e~r~~~R~Ldlr~~~~~~~~~~ 127 (422)
T 1n9w_A 68 NAK----APGGLEVQAKEVEVLSPALEPTPVEIPKE----------------EWRANPDTLLEYRYVTLRGEKARAPLKV 127 (422)
T ss_dssp CTT----STTSEEEEEEEEEEEECCCSCCC---------------------------------CHHHHTTSHHHHHHHHH
T ss_pred cCC----CCccEEEEEeEEEEeccCCcCCCCCcccc----------------ccCCCHHHHhhhhHHhhcCHHHHHHHHH
Confidence 642 347899999999999999 9999876531 0126789999999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 312 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~ 312 (417)
||.|++++|+||.++||+||+||+|+.+++||++++|.++|+|.++||+||||||+|+++ +|++|||+||||||+|+++
T Consensus 128 rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~ 206 (422)
T 1n9w_A 128 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHH 206 (422)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHH-HHHSEEEEEEEC-------
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCC
Confidence 999999999999999999999999999989999999999999999999999999999987 7899999999999999998
Q ss_pred CcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 014856 313 THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 392 (417)
Q Consensus 313 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~ 392 (417)
+.||+|||||||+||+|.++|+|+|+++|+||+++++.+.++|..+|..++..++.. ..||+||||.||+++|++.
T Consensus 207 ~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~----~~pf~rity~eA~~~~~~~ 282 (422)
T 1n9w_A 207 TSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSF----PQDIPRLTHAEAKRILKEE 282 (422)
T ss_dssp ------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCC----SSSCCEEEHHHHHHHHHHT
T ss_pred CCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccccc----CCCcceeEHHHHHHHHHhc
Confidence 899999999999999999449999999999999999999998888887766543321 1689999999999999988
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhh
Q 014856 393 GVEIDPLGDLNTESERKLGQLVL 415 (417)
Q Consensus 393 g~~~~~~~dl~te~E~~L~~~vk 415 (417)
| ++.|++|+++++|++|++.+.
T Consensus 283 ~-~~~~~~dl~~~~e~~l~~~~~ 304 (422)
T 1n9w_A 283 L-GYPVGQDLSEEAERLLGEYAK 304 (422)
T ss_dssp S-CCCCCSSCCHHHHHHHHHHHH
T ss_pred C-CcccccccCcHHHHHHHHHHH
Confidence 8 778889999999999999885
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=1e-60 Score=499.83 Aligned_cols=279 Identities=20% Similarity=0.302 Sum_probs=232.2
Q ss_pred CCCCCCCccccccCcce-eeeccccc-c--cCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHH
Q 014856 76 NDPQTGKWSEAVSGREW-TEVGALNG-S--LKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVR 134 (417)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~~-~--~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~ 134 (417)
.+||||+|.++++..+. ....+++. . ..|+.|+|+|| +++.||||++.+. +++++++
T Consensus 24 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~--~~~~~~~ 101 (493)
T 3a74_A 24 VDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDD--VGEQQYE 101 (493)
T ss_dssp CCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHH--HHHHHHH
T ss_pred CCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCc--CCHHHHH
Confidence 48999999988765332 12222211 1 12889999999 5679999998531 3456677
Q ss_pred HHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhh
Q 014856 135 FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTR 213 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etR 213 (417)
.++.|+.||+|.|+|+|..++ +|++||++++|.|||+| .+||....+ ..+.++|
T Consensus 102 ~~~~l~~g~~v~V~G~v~~~~------~ge~ei~~~~i~vl~~~~~plP~k~~~-------------------~~~~e~r 156 (493)
T 3a74_A 102 LFKISDLGDIVGVRGTMFKTK------VGELSIKVSSYEFLTKALRPLPEKYHG-------------------LKDIEQR 156 (493)
T ss_dssp HHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCCC------------------------CHHHH
T ss_pred HHhcCCCCCEEEEEEEEEeCC------CCcEEEEEEEEEEcccccCCCCccccC-------------------CCCHhhh
Confidence 778999999999999998743 47899999999999999 999965322 2678999
Q ss_pred ccccceeee-chhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeee--ccCCCceeeccCHHHHHHH
Q 014856 214 LNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQM 290 (417)
Q Consensus 214 l~~R~LdlR-~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~ 290 (417)
+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++++|.+ ++||.++||+||||||+|+
T Consensus 157 ~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~ 236 (493)
T 3a74_A 157 YRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKR 236 (493)
T ss_dssp HHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHH
T ss_pred hhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHHH
Confidence 999999997 6999999999999999999999999999999999997654445789988 7899999999999999999
Q ss_pred hhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcc
Q 014856 291 SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEP 370 (417)
Q Consensus 291 li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~ 370 (417)
++++|++|||+||||||||+++ .||||||||||+||+|.+ |+|+|+++|+||+++++.+.++|. +. +....
T Consensus 237 l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d-~~dlm~l~E~ll~~l~~~v~~~~~--i~-----~~~~~ 307 (493)
T 3a74_A 237 LIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYAD-FRDIMKLTENLIAHIATEVLGTTK--IQ-----YGEHL 307 (493)
T ss_dssp HHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSCSE--EE-----ETTEE
T ss_pred HhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHhCCce--Ee-----eCCEe
Confidence 9999999999999999999985 599999999999999996 999999999999999999987663 21 22234
Q ss_pred cCCCCCCceeeHHHHHHHHH
Q 014856 371 LKYKPKTLRLTFEEGVQMLK 390 (417)
Q Consensus 371 ~~~~~p~~rit~~eAi~~L~ 390 (417)
+++..||+||||.||++.+.
T Consensus 308 i~~~~pf~rity~eai~~~~ 327 (493)
T 3a74_A 308 VDLTPEWRRLHMVDAIKEYV 327 (493)
T ss_dssp EECCSSCEEEEHHHHHHHHT
T ss_pred eccCCCcceeeHHHHHHHHh
Confidence 56677999999999998654
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=1.3e-57 Score=484.33 Aligned_cols=261 Identities=27% Similarity=0.398 Sum_probs=220.9
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.+++|...+.|++|+|+|| +++.||||++.+. + ++++++.|+.||+|.|+|+|..++
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~~ 79 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLRP 79 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEECS
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcCC
Confidence 45678877889999999999 6778999997532 2 567788999999999999998764
Q ss_pred cc-CCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHh
Q 014856 156 VE-IKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 234 (417)
Q Consensus 156 ~~-~~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs 234 (417)
.. .+..+|++||++++|.|||+|.++|+.+.+..++ .....++.++||+|||||||++.++++|++||
T Consensus 80 ~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~-----------~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs 148 (580)
T 1l0w_A 80 EPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRG-----------EEEKEASEELRLKYRYLDLRRRRMQENLRLRH 148 (580)
T ss_dssp SCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGT-----------CCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHH
T ss_pred CcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccc-----------cccccCCHHHhhhhhHHHhcCHHHHHHHHHHH
Confidence 22 2235688999999999999996688877553221 01234789999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeecc--CCCce-eeccCHHHHHHHhhcccCCceEEEeeccccCCC
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 311 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~-~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s 311 (417)
.|+++||+||+++||+||+||+|+++++|| |.+|.|.+ ++..+ ||+||||||||+||++|++||||||||||||++
T Consensus 149 ~i~~~iR~fl~~~gF~EVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~ 227 (580)
T 1l0w_A 149 RVIKAIWDFLDREGFVQVETPFLTKSTPEG-ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL 227 (580)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCC
Confidence 999999999999999999999999877775 67798853 44444 599999999999999999999999999999999
Q ss_pred CCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 014856 312 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 389 (417)
Q Consensus 312 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L 389 (417)
++.|| ||||||||||+|.+ |+|+|+++|+||+++++.+.+ .++..||+||||.||++.+
T Consensus 228 ~~~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~-----------------~~~~~pf~rity~eA~~~~ 286 (580)
T 1l0w_A 228 RADRQ-PDFTQLDLEMSFVE-VEDVLELNERLMAHVFREALG-----------------VELPLPFPRLSYEEAMERY 286 (580)
T ss_dssp CSSCC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHTC-----------------CCCCSSCCEEEHHHHHHHH
T ss_pred CCCcC-CCccceeeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CccCCCccEEEHHHHHHHh
Confidence 77666 59999999999997 999999999999999998863 1234589999999999865
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=2.5e-56 Score=475.35 Aligned_cols=253 Identities=26% Similarity=0.389 Sum_probs=217.2
Q ss_pred eeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCC
Q 014856 93 TEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 155 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 155 (417)
+.+++|...+.|++|+|+|| +++.||||++.+ ..+++++++.|+.||+|.|+|+|..++
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~----~~~~~~~~~~l~~e~~V~V~G~v~~~~ 79 (585)
T 1c0a_A 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPD----RADALKLASELRNEFCIQVTGTVRARD 79 (585)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGG----GHHHHHHHTTCCTTCEEEEEEEEEECC
T ss_pred eEHHHHHHHhCCCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCC----chHHHHHHhcCCCCCEEEEEeEEEccC
Confidence 35677877888999999999 577899999753 256778889999999999999998764
Q ss_pred cc---CCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH
Q 014856 156 VE---IKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232 (417)
Q Consensus 156 ~~---~~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~ 232 (417)
.. .+..+|++||++++|.|||+|.++|+.+.+ .++.++||+|||||||++.++++|++
T Consensus 80 ~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-------------------~~~~e~Rl~~R~LdLR~~~~~~~l~~ 140 (585)
T 1c0a_A 80 EKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-------------------VNTEEARLKYRYLDLRRPEMAQRLKT 140 (585)
T ss_dssp TTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-------------------CCCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred cccccccCCCccEEEEEeEEEEEeccCCCCCCccc-------------------cCCHhHhhhchHhhhcCHHHHHHHHH
Confidence 32 223568999999999999999668887654 26789999999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeecc--C-CCceeeccCHHHHHHHhhcccCCceEEEeeccccC
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--K-GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 309 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~-~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E 309 (417)
||.|+++||+||+++||+||+||+|+++++|| |.+|.|.+ + +..+||+||||||||+||++|++||||||||||||
T Consensus 141 Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E 219 (585)
T 1c0a_A 141 RAKITSLVRRFMDDHGFLDIETPMLTKATPEG-ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDE 219 (585)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecC
Confidence 99999999999999999999999999887775 67798853 4 44456999999999999999999999999999999
Q ss_pred CCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 014856 310 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 389 (417)
Q Consensus 310 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L 389 (417)
++++.|| |||||||+||+|.+ |+|+|+++|+||+++++.+.+. .+.. |+||||.||++.+
T Consensus 220 ~~~t~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~~-----------------~~~~-f~r~ty~ea~~~~ 279 (585)
T 1c0a_A 220 DLRADRQ-PEFTQIDVETSFMT-APQVREVMEALVRHLWLEVKGV-----------------DLGD-FPVMTFAEAERRY 279 (585)
T ss_dssp CCBTTBC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSC-----------------CCCS-CCEEEHHHHHHHH
T ss_pred CCCCCcC-cccceeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCC-----------------Cccc-cceeeHHHHHHHh
Confidence 9977666 59999999999997 9999999999999999987632 1123 8999999999744
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-56 Score=472.72 Aligned_cols=261 Identities=26% Similarity=0.355 Sum_probs=225.7
Q ss_pred eeecccccccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc--
Q 014856 93 TEVGALNGSLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-- 156 (417)
Q Consensus 93 ~~i~~l~~~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-- 156 (417)
+.+++|...+.|++|+|+|| +++.||||++.+. .+++++++++.|+.||+|.|+|+|...+.
T Consensus 13 ~~~~~l~~~~~g~~V~l~GwV~~~R~~~Fi~LrD~~g~iQvv~~~~~--~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~ 90 (617)
T 4ah6_A 13 NTCGELRSSHLGQEVTLCGWIQYRRQNTFLVLRDFDGLVQVIIPQDE--SAASVKKILCEAPVESVVQVSGTVISRPAGQ 90 (617)
T ss_dssp SCGGGCCGGGTTCEEEEEEEECCCCTTTEEEEECSSCEEEEECCCSS--SSHHHHHHHHHCCSSCEEEEEEEEEECSTTC
T ss_pred eEHHHhHHHhCCCEEEEEEEeeeecCeEEEEEEeCCcCEEEEEeCCc--CcHHHHHHHhcCCCCCEEEEEEEEEeCCccc
Confidence 56788888899999999999 6779999998642 35678899999999999999999987432
Q ss_pred -cCCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhH
Q 014856 157 -EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 235 (417)
Q Consensus 157 -~~~~~t~~~El~~~~i~vls~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~ 235 (417)
+.+..+|++||++++|.||++|.+||+++++.. .++.++||+|||||||++.++++|++||.
T Consensus 91 ~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~-----------------~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~ 153 (617)
T 4ah6_A 91 ENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFV-----------------KKTEALRLQYRYLDLRSFQMQYNLRLRSQ 153 (617)
T ss_dssp CCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTC-----------------CSCHHHHHHTHHHHTTSHHHHHHHHHHHH
T ss_pred cCccCCCCcEEEEEeEEEEeecCCCCCccccccc-----------------ccChhhhccceeeeecchHHHHHHHHHHH
Confidence 223456899999999999999988999876532 26789999999999999999999999999
Q ss_pred HHHHHHHHhh-hCCcEeecCceeeecCCCCCcceeeecc--CCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCC
Q 014856 236 VGNIFRQFLL-SENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 312 (417)
Q Consensus 236 i~~~iR~fl~-~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~ 312 (417)
|+++||+||. ++||+||+||+|++++ .|||.+|.+.+ +|..+||+||||||||+||++|++|||+||||||||+++
T Consensus 154 i~~~iR~f~~~~~gF~EVeTPiL~~st-~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~ 232 (617)
T 4ah6_A 154 MVMKMREYLCNLHGFVDIETPTLFKRT-PGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR 232 (617)
T ss_dssp HHHHHHHHHHTTSCCEECCCCSSBCCC-CSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHhcCCeEEEeCCeeccCC-CCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCC
Confidence 9999999996 7999999999999764 45688899865 689999999999999999999999999999999999986
Q ss_pred CcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 014856 313 THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 392 (417)
Q Consensus 313 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~ 392 (417)
+ +|+|||||||+||+|.+ ++|+|+++|+||+++++.+. .++..||+||||.||+. ..
T Consensus 233 t-~r~pEFt~lE~e~af~d-~~d~m~~~E~l~~~~~~~~~------------------~~~~~pf~r~ty~eA~~---~y 289 (617)
T 4ah6_A 233 P-DRQPEFTQIDIEMSFVD-QTGIQSLIEGLLQYSWPNDK------------------DPVVVPFPTMTFAEVLA---TY 289 (617)
T ss_dssp S-SSCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHSCSSS------------------CCCCSSCCEEEHHHHHH---HT
T ss_pred C-CcCcceecceeeecCCC-HHHHHHHHHHHHHHHHHHhc------------------CccCCCceEeEHHHHHH---HH
Confidence 5 56999999999999997 99999999999999976532 12356899999999996 55
Q ss_pred CCCC
Q 014856 393 GVEI 396 (417)
Q Consensus 393 g~~~ 396 (417)
|.+-
T Consensus 290 gsDk 293 (617)
T 4ah6_A 290 GTDK 293 (617)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 6543
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=3.2e-42 Score=345.72 Aligned_cols=169 Identities=19% Similarity=0.221 Sum_probs=139.9
Q ss_pred eechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCCC-CCcceeeeccCC------CceeeccCHHHHHHHhhc
Q 014856 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE-GGSAVFRLDYKG------QSACLAQSPQLHKQMSIC 293 (417)
Q Consensus 221 lR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e-gga~~F~v~~~~------~~~~L~~Spql~lq~li~ 293 (417)
.|++ ++++|++||.|+++||+||.++||+||+||+|++++++ +++.+|.++||+ .++||+||||||||++++
T Consensus 28 ~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 28 QPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp SCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred CCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHH
Confidence 4555 88999999999999999999999999999999987765 468899999997 789999999999999999
Q ss_pred ccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCC
Q 014856 294 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKY 373 (417)
Q Consensus 294 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (417)
+|++||||||||||||++ |.||||||||||+||+|.+ |+|+|+++|+||+++++.
T Consensus 107 ~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d-~~d~m~~~E~li~~v~~~----------------------- 161 (345)
T 3a5y_A 107 AGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDC----------------------- 161 (345)
T ss_dssp TTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHCC-----------------------
T ss_pred cCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCC-HHHHHHHHHHHHHHHHcC-----------------------
Confidence 999999999999999998 9999999999999999996 999999999999999861
Q ss_pred CCCCceeeHHHHHHH-----------------HHHcCCC-CCCC-CCCCcHHHHHHHHHhhc
Q 014856 374 KPKTLRLTFEEGVQM-----------------LKDAGVE-IDPL-GDLNTESERKLGQLVLE 416 (417)
Q Consensus 374 ~~p~~rit~~eAi~~-----------------L~~~g~~-~~~~-~dl~te~E~~L~~~vke 416 (417)
.||+||||.||++. +++.|+. +.++ +|+.+..|+.|+++|.+
T Consensus 162 -~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~ 222 (345)
T 3a5y_A 162 -PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEP 222 (345)
T ss_dssp -CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGG
T ss_pred -CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHH
Confidence 26888888888753 3334554 5555 67888889999988753
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=1.3e-37 Score=306.23 Aligned_cols=157 Identities=24% Similarity=0.318 Sum_probs=142.8
Q ss_pred cccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeec--------CCCCCcceeeeccCCCceeeccCHHH
Q 014856 215 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG--------SSEGGSAVFRLDYKGQSACLAQSPQL 286 (417)
Q Consensus 215 ~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~--------~~egga~~F~v~~~~~~~~L~~Spql 286 (417)
+|||||||++ ++++|++|+.|++.+|+||.++||+||+||+|..+ .+|| +++|.++|+|.++||++|||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~ 78 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMIL 78 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHH
Confidence 5899999999 99999999999999999999999999999999998 7777 999999999999999999999
Q ss_pred HHHHhhcccCCceEEEeeccccCC--CCCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhh
Q 014856 287 HKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAK 364 (417)
Q Consensus 287 ~lq~li~~g~~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~ 364 (417)
|+|+++++|++|||+||||||+|+ +++.||+|||||||+|++|.+ ++|+|+++|+|++++++.+.+. ++.
T Consensus 79 ~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~-~~~l~~~~e~l~~~l~~~~~~~-------~~~ 150 (294)
T 1nnh_A 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-MEDIMRLIERLVYGLFRKAEEW-------TGR 150 (294)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHH-------HSS
T ss_pred HHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence 999999999999999999999999 878899999999999999997 9999999999999999987642 111
Q ss_pred cCCCcccC-CCCCCceeeHHHHHH
Q 014856 365 QYPFEPLK-YKPKTLRLTFEEGVQ 387 (417)
Q Consensus 365 ~~~~~~~~-~~~p~~rit~~eAi~ 387 (417)
.++ +. +|+|++|.||++
T Consensus 151 -----~i~~~~-~~~r~~y~ea~~ 168 (294)
T 1nnh_A 151 -----EFPKTK-RFEVFEYSEVLE 168 (294)
T ss_dssp -----CCCCCS-SCEEEEHHHHHH
T ss_pred -----ccccCC-CceEeEHHHHHH
Confidence 122 23 399999999995
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.90 E-value=2.6e-25 Score=218.07 Aligned_cols=166 Identities=19% Similarity=0.265 Sum_probs=131.6
Q ss_pred CCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHH-----
Q 014856 159 KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI----- 232 (417)
Q Consensus 159 ~~~t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~----- 232 (417)
+.++|++||++++|.+|++| .+||+++++. ..||++||||+|++..++++++
T Consensus 21 ~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~----------------------~~~l~~r~l~~R~~~~~~i~~~g~~~~ 78 (290)
T 3qtc_A 21 ASAPALTKSQTDRLEVLLNPKDEISLNSGKP----------------------FRELESELLSRRKKDLQQIYAEERENY 78 (290)
T ss_dssp ---CCCCHHHHHHHHHHCCTTCC----CCSC----------------------HHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred cCCCceEEEEhhhhhhhccCCCCCCCCcchh----------------------hhhhhhHHHHhccchHHHHhccccccH
Confidence 34568999999999999999 8999976431 2489999999999999999999
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecCCC------CCcceee-eccCCCceeec--cCHHHHHHHhh----cccCCce
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSE------GGSAVFR-LDYKGQSACLA--QSPQLHKQMSI----CGDFGRV 299 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e------gga~~F~-v~~~~~~~~L~--~Spql~lq~li----~~g~~rV 299 (417)
++.+.+.+|++|...||.||.||+|++..+. ++...+. +.+|+...+|| +||+|+..+.. ..+..|+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rl 158 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKI 158 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEE
Confidence 9999999999999999999999999976431 1221222 34568899999 99999976654 2566899
Q ss_pred EEEeeccccCCCCCcccccccccceeeechhc-cHHHHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVTI 347 (417)
Q Consensus 300 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 347 (417)
||||+|||+|.. +.+|++||||+|+++.+.+ ++.++..+++.++..+
T Consensus 159 feiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 159 FEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp EEEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred EEEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 999999999974 7899999999999998853 4677777777777654
No 19
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.10 E-value=2.4e-10 Score=112.05 Aligned_cols=112 Identities=11% Similarity=0.135 Sum_probs=86.9
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecC----CC--CCc-------ceeeeccCCCceeeccCHHHHHHHhhccc----
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE--GGS-------AVFRLDYKGQSACLAQSPQLHKQMSICGD---- 295 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~e--gga-------~~F~v~~~~~~~~L~~Spql~lq~li~~g---- 295 (417)
.+.+.+.+|++|..+||.||.+|.+.+.. .- +.. ++|.+ +...+||+|.-..+..+++.+
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l---~e~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI---TDEILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBS---SSSEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEE---cCcceeeccCHHHHHHHHHhcCCCC
Confidence 45688899999999999999999886531 00 000 02322 356788888777777777776
Q ss_pred CCceEEEeeccccCCCCCcccccccccceeeech--hccHHHHHHHHHHHHHHHhH
Q 014856 296 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI--KKHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~--~~~~~d~m~~~e~li~~i~~ 349 (417)
-.|+||||+|||+++. +.+|+|||+||++++++ .+ +.+++.+++.++..++.
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~d-f~dlKg~le~ll~~l~g 185 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIK-MSDLKGTLELVAKKLFG 185 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCC-HHHHHHHHHHHHHHHHC
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCC-HHHHHHHHHHHHHHHhC
Confidence 6799999999998763 56799999999999988 44 89999999999988753
No 20
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.98 E-value=9.9e-10 Score=110.12 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=81.9
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecC-------CCC--C----cceeeecc-CC-----------Cceeec--cCHH
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG--G----SAVFRLDY-KG-----------QSACLA--QSPQ 285 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~eg--g----a~~F~v~~-~~-----------~~~~L~--~Spq 285 (417)
.+.+.+.||++|...||.||.+|.+.+.. ... . .+.|.+.. .. ....|| .||.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 35677889999999999999999986521 110 0 22454431 11 334455 6666
Q ss_pred HHHHHhhccc-C-CceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHHhH
Q 014856 286 LHKQMSICGD-F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 286 l~lq~li~~g-~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 349 (417)
+. .++..+ . -|+||||+|||++.. +.+|+|||+|||+++.+. -++.|++..++.++..++.
T Consensus 183 ll--r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG 246 (350)
T 1b7y_A 183 QV--RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG 246 (350)
T ss_dssp HH--HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC
T ss_pred HH--HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcC
Confidence 65 344433 2 489999999999874 678999999999999885 1389999999999998864
No 21
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=98.82 E-value=4.3e-08 Score=95.87 Aligned_cols=154 Identities=12% Similarity=0.168 Sum_probs=118.5
Q ss_pred HHHHhHHHHHHHHHhh-----hCCcEeecCceeeecCCC-----CC-cceeeeccC---CCceeeccCHHHHHHHhhcc-
Q 014856 230 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GG-SAVFRLDYK---GQSACLAQSPQLHKQMSICG- 294 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~e-----gg-a~~F~v~~~---~~~~~L~~Spql~lq~li~~- 294 (417)
++-...++.++++||. +.||++|..|+++...++ .| ..|..++.. |..+-+.+|--.||++++..
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4566778899999998 899999999999874432 13 335444443 78899999999999999864
Q ss_pred cC---CceEEEeeccccCCC-CCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcc
Q 014856 295 DF---GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEP 370 (417)
Q Consensus 295 g~---~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~ 370 (417)
|| +++|+-+++.|.+.. -|.+|.-+|+|.|||..... -+..|++++++++.|+..+...-. .+...|...+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~-~~R~~~~Lk~tV~~Iy~~ik~tE~----~~~~~y~l~p 159 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATEA----AVSEEFGLAP 159 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHHH----HHHHHSCCCC
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc-cchHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCc
Confidence 58 999999999997554 68999999999999999986 678999999998888887764211 2444552222
Q ss_pred cCCCCCCceeeHHHHHHHH
Q 014856 371 LKYKPKTLRLTFEEGVQML 389 (417)
Q Consensus 371 ~~~~~p~~rit~~eAi~~L 389 (417)
.++.++..||.+|..+++
T Consensus 160 -~Lp~~i~fitsqeL~~~Y 177 (330)
T 12as_A 160 -FLPDQIHFVHSQELLSRY 177 (330)
T ss_dssp -CSCSSCEEEEHHHHHHHS
T ss_pred -CCCCceEEEeHHHHHHHc
Confidence 156788899999988754
No 22
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.78 E-value=5.2e-09 Score=102.27 Aligned_cols=112 Identities=23% Similarity=0.371 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCC---CC-Cc--ceeee-ccCCCceeecc--CHHHHH--HHhhcccCC---ce
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-GS--AVFRL-DYKGQSACLAQ--SPQLHK--QMSICGDFG---RV 299 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-ga--~~F~v-~~~~~~~~L~~--Spql~l--q~li~~g~~---rV 299 (417)
..+.+.+|++|...||.||.||.|..... .| .. +.|.+ ++.+..++||. +|.+.. ...+ ..-+ |+
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~-~~~~~Plrl 152 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELE-RLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHT-TTSCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHH-hCCCCCEEE
Confidence 57899999999999999999999986421 11 11 22322 23446789994 566552 2122 2233 89
Q ss_pred EEEeeccccCCCCCcccccccccceeeechhc---cHHHHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK---HYSEVMDIVDCLFVTI 347 (417)
Q Consensus 300 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~---~~~d~m~~~e~li~~i 347 (417)
|+||+|||+|.. +..|++||+|+|+++.... ++.+++.+++.++..+
T Consensus 153 feiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 153 FEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 999999999986 6789999999999986641 2667777777777665
No 23
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.26 E-value=1.9e-06 Score=87.39 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=75.8
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C-C-----CcceeeeccCCCceeeccCHHHHHHHhhcc------
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG------ 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~v~~~~~~~~L~~Spql~lq~li~~------ 294 (417)
-.+++..|.+.+|+.|...||.||.||+|..... . | +.+.|.++--+..++|+-...-..=.+++.
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 108 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYR 108 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhh
Confidence 4668899999999999999999999999987531 0 1 234666555678899997665433222221
Q ss_pred cC-CceEEEeeccccCCCCCcc----cccccccceeeechhccHHHHHHH
Q 014856 295 DF-GRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDI 339 (417)
Q Consensus 295 g~-~rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~~~~~~d~m~~ 339 (417)
.+ -|+|+||+|||+|.+ +.+ -.-||+|+|+|. |.+ ..++...
T Consensus 109 ~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~-~~~~~~e 155 (401)
T 1evl_A 109 DLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCT-EEQIRDE 155 (401)
T ss_dssp GCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EEC-GGGHHHH
T ss_pred hCChhhccccceecCCCC-cccccccccCcEEecceEE-eCC-HHHHHHH
Confidence 22 499999999999985 222 347999999995 554 3444433
No 24
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.23 E-value=2e-06 Score=85.38 Aligned_cols=109 Identities=12% Similarity=0.194 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCC--------C-CCc----ceeeeccCCCceeec--cCHHHHHHHhhcccCC-
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSS--------E-GGS----AVFRLDYKGQSACLA--QSPQLHKQMSICGDFG- 297 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~--------e-gga----~~F~v~~~~~~~~L~--~Spql~lq~li~~g~~- 297 (417)
+.+.+.||++|...||.|+.+|.+....- + .-+ ..| |.+....|| .||.+- + .+..+-.
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~---~i~e~~vLRThtsp~~l-r-~l~~~~~p 184 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTF---WFDTTRLLRTQTSGVQI-R-TMKAQQPP 184 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCC---BSSSSCEECSCTHHHHH-H-HHTTCCSS
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccE---EeCCCceecccCCHHHH-H-HHHhCCCC
Confidence 44668889999999999999998854210 1 101 123 334455666 456552 2 3444433
Q ss_pred -ceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHHhH
Q 014856 298 -RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFD 349 (417)
Q Consensus 298 -rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 349 (417)
|+|++|+|||++ . +.+|+|+|+|+|..+... -++.++..+++.++..+|.
T Consensus 185 irifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 185 IRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp CCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred eeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999997 3 789999999999766531 1388999999999998875
No 25
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.22 E-value=1.3e-06 Score=88.72 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=74.5
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC----CCC------cceeee-ccCCCceeeccCHHH-----HHHHhh
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EGG------SAVFRL-DYKGQSACLAQSPQL-----HKQMSI 292 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~----egg------a~~F~v-~~~~~~~~L~~Spql-----~lq~li 292 (417)
-.+++..|.+.+|+.|...||.||.||+|..... -|| .+.|.+ +--|+.++|+--... |.....
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~~ 94 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKM 94 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhccc
Confidence 4668899999999999999999999999987431 122 135554 334577888843322 222222
Q ss_pred c--cc-CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 293 C--GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 293 ~--~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
. .. --|+|+||+|||+|.+. .-+.-||+|+|+|.-..++. .+++.++.+++..
T Consensus 95 ~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~ 153 (420)
T 1qe0_A 95 QGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQS 153 (420)
T ss_dssp GGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHH
Confidence 1 12 25999999999999753 34678999999998665432 3566666555554
No 26
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.19 E-value=9.7e-06 Score=80.86 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=73.7
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC------C----CCcceeee-ccCCCceeecc--CHHHHHHHhhccc
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------E----GGSAVFRL-DYKGQSACLAQ--SPQLHKQMSICGD 295 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------e----gga~~F~v-~~~~~~~~L~~--Spql~lq~li~~g 295 (417)
-.+++..|.+.+|+.|...||.||.||++..... + .+.+.|.+ +--|+.+.|+- .|.+..- +....
T Consensus 35 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~-~~~~~ 113 (344)
T 1z7m_A 35 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRL-YSQIK 113 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHH-HHTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHH-HHhcC
Confidence 3568889999999999999999999999987421 1 12346665 44677888883 3333222 21111
Q ss_pred ---CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHH
Q 014856 296 ---FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFV 345 (417)
Q Consensus 296 ---~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 345 (417)
--|.|+||+|||+|.+. .-+.-||+|+++|.-..++. .+++.++.+++.
T Consensus 114 ~~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~ 168 (344)
T 1z7m_A 114 DSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGESADKSELEILSLALQVIE 168 (344)
T ss_dssp SCCCEEEEEEEECCCCCC--------CCEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 25999999999999863 44788999999998665421 244444444443
No 27
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.18 E-value=4.8e-06 Score=86.08 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=73.2
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecC----CC----CCcceeee-ccCCCceeeccC-----HHHHHHHhhc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE----GGSAVFRL-DYKGQSACLAQS-----PQLHKQMSIC 293 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~e----gga~~F~v-~~~~~~~~L~~S-----pql~lq~li~ 293 (417)
.-.+++..|.+.+|+.|...||.||.||+|.... ++ -+.+.|.+ +--|+.++|+.. +.++...+..
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s 144 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKS 144 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhh
Confidence 4578899999999999999999999999998753 11 12345665 345788999863 2444443221
Q ss_pred c-cC-CceEEEeeccccCCCCCc--ccccccccceeeechhc
Q 014856 294 G-DF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKK 331 (417)
Q Consensus 294 ~-g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~ 331 (417)
. .+ -|+|+||+|||+|-.-.. --..||+|+|+|.-..+
T Consensus 145 ~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~ 186 (458)
T 2i4l_A 145 YKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVD 186 (458)
T ss_dssp GGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESS
T ss_pred ccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECC
Confidence 1 12 499999999999942111 13579999999986643
No 28
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.12 E-value=1.1e-05 Score=82.40 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=73.0
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C--C---Ccceeee-ccCCCceeeccCHHHHHHHhhcc-c---C
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E--G---GSAVFRL-DYKGQSACLAQSPQLHKQMSICG-D---F 296 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e--g---ga~~F~v-~~~~~~~~L~~Spql~lq~li~~-g---~ 296 (417)
-.+++..|.+.+|+-|...||.||.||+|..... . | +.+.|.+ +--|+.+.|+--.-...=++++. . +
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~l 98 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQR 98 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCCC
Confidence 3668899999999999999999999999987431 1 1 2346765 44678888884322222222222 1 2
Q ss_pred -CceEEEeeccccCCCCCcccccccccceeeechhc
Q 014856 297 -GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 331 (417)
Q Consensus 297 -~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~ 331 (417)
-|.|+||++||.|.+. .-+.-||+|+++|.-..+
T Consensus 99 P~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 99 PLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp SEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred CeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 4999999999999764 335789999999986654
No 29
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.08 E-value=1.3e-05 Score=82.24 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=74.8
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--------CCCcceeeeccCCCceeeccCHHH-----HHHHhhcc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQL-----HKQMSICG 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--------egga~~F~v~~~~~~~~L~~Spql-----~lq~li~~ 294 (417)
.-.+++..|.+++++++.+.||.||.||.|..... ..+-+.|.+. +..+||+-..+. |....+..
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~ 247 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKE 247 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhcccc
Confidence 44668999999999999999999999999987531 1122356543 678899855443 33322221
Q ss_pred -c-CCceEEEeeccccCCCCCc------ccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 295 -D-FGRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 295 -g-~~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
. --|+|++|+|||+|.+... --.-||+|+|++. |.. -++..+..++++.
T Consensus 248 ~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~-pe~s~~~~~e~i~ 304 (425)
T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVH-PDTSYDELEKLVK 304 (425)
T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred ccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECC-HHHHHHHHHHHHH
Confidence 2 2499999999999985311 1235999999976 332 2344444444443
No 30
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.07 E-value=7.6e-06 Score=88.06 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=73.7
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC-----cceeee-ccCC-CceeeccCHHHHHHHhhcc---
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRL-DYKG-QSACLAQSPQLHKQMSICG--- 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v-~~~~-~~~~L~~Spql~lq~li~~--- 294 (417)
.-.+++..|.+.+|+.|.+.||.||.||+|..... -|. -+.|.+ +--+ +.++|+--..-..=+++..
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~ 348 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPH 348 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhh
Confidence 45789999999999999999999999999987431 121 234543 3346 7888985443222222222
Q ss_pred ---cC-CceEEEeeccccCCCCCccc----ccccccceeeechhccHHHHHH
Q 014856 295 ---DF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMD 338 (417)
Q Consensus 295 ---g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~~~~~d~m~ 338 (417)
.+ -|+|+||+|||+|.+. .+| .-||||+|+|. |.+ .+.+.+
T Consensus 349 syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~-~~~~~d 397 (645)
T 1nyr_A 349 SYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVR-PDQIKE 397 (645)
T ss_dssp BGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EEC-GGGHHH
T ss_pred hccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcC-HHHHHH
Confidence 12 3999999999999973 333 47999999998 553 334443
No 31
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.04 E-value=2e-05 Score=80.16 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=77.7
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC------CCCcceeee-ccCCCceeecc--CHHHHH---HHhhcccC
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLAQ--SPQLHK---QMSICGDF 296 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~~--Spql~l---q~li~~g~ 296 (417)
-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+ +--|+.+.||- .|.+.. ..+-...+
T Consensus 23 ~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 102 (400)
T 3od1_A 23 WYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRAY 102 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCCC
Confidence 3568889999999999999999999999976432 112346765 44567777872 233322 11101122
Q ss_pred -CceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 297 -GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 297 -~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
-|.|+||+|||.|.+. .-+.-||+|+++|.-..++. -|++.++.+++..
T Consensus 103 P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~ 155 (400)
T 3od1_A 103 PLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDGTASADGEVIALMIAALKR 155 (400)
T ss_dssp CEEEEEEEEEECCCC----CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHH
Confidence 4999999999999863 44678999999998654432 3566666666643
No 32
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.02 E-value=1.6e-05 Score=80.83 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=77.5
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--CC-C-------cceeee-ccCCCceeecc--CHHHHHHHhhcc-
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG-G-------SAVFRL-DYKGQSACLAQ--SPQLHKQMSICG- 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--eg-g-------a~~F~v-~~~~~~~~L~~--Spql~lq~li~~- 294 (417)
-.+++..|.+.+|+-|...||.||.||+|..... .+ | .+.|.+ +--|+.+.|+- .|.+..- .+..
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~-~~~~~ 94 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRA-YLEHG 94 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHH-HHhcc
Confidence 3568889999999999999999999999987431 11 2 246765 44577888873 3333332 1111
Q ss_pred ----c-CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHH
Q 014856 295 ----D-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFV 345 (417)
Q Consensus 295 ----g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 345 (417)
. --|.|+||++||.|.+. .-+.-||+|+++|.-..++. .+++.++.+++.
T Consensus 95 ~~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~ 152 (421)
T 1h4v_B 95 MKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSENPILDAEAVVLLYECLK 152 (421)
T ss_pred ccccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCCChhhhHHHHHHHHHHHH
Confidence 1 25999999999999764 34668999999998664422 144444444443
No 33
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.01 E-value=2.4e-05 Score=81.39 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=78.9
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC------cceeeeccC-----CCceeeccCHH-----HHHH
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHKQ 289 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~lq 289 (417)
-.+++..|.+.+|+.|...||.||.||+|.+... ++| -+.|.+..- +..++|+--.+ +|.+
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 4668899999999999999999999999998652 122 235665432 57899986554 4555
Q ss_pred Hhhcc-cC-CceEEEeeccccCCC-CCcccccccccceeeechhccHHHHHHHHHHH
Q 014856 290 MSICG-DF-GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCL 343 (417)
Q Consensus 290 ~li~~-g~-~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l 343 (417)
..... .+ -|+|+||+|||+|.+ ...--.-||+|+|.+..+.+ ..++...+..+
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~-~~~ad~E~~~~ 178 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRM 178 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHH
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCC-HHHHHHHHHHH
Confidence 43221 33 399999999999964 12113459999999998875 45554444444
No 34
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=98.01 E-value=1.4e-05 Score=82.93 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=77.4
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---C-CC------cceeee-ccC-CCceeecc--CHHHHH---HHh
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYK-GQSACLAQ--SPQLHK---QMS 291 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~v-~~~-~~~~~L~~--Spql~l---q~l 291 (417)
-.+++..|.+.+|+.|...||.||.||+|..... . |. .+.|.+ +-- |+.+.|+- .|.+.. +..
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~ 124 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHN 124 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcc
Confidence 4668999999999999999999999999976431 1 21 235665 334 77888883 333322 111
Q ss_pred hccc-CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 292 ICGD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 292 i~~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
.... --|.|+||+|||.|.+.. -+.-||+|+++|+-..++. .+++.++.+++..
T Consensus 125 ~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~ 182 (467)
T 4e51_A 125 MLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWED 182 (467)
T ss_dssp TTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 1111 248999999999998644 4568999999998543321 3566666655544
No 35
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.97 E-value=1.4e-05 Score=81.16 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=72.3
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---C-CC------cceeee-ccCCCceeecc--CHHHHHHHhhcc-
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYKGQSACLAQ--SPQLHKQMSICG- 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~v-~~~~~~~~L~~--Spql~lq~li~~- 294 (417)
-.+++..|.+.+|+-|...||.||.||+|..... . |. .+.|.+ +--|+.+.|+- .|.+..- .+..
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~-~~~~~ 95 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRA-GIEHG 95 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHH-HHhcc
Confidence 3668899999999999999999999999987431 1 21 246766 44577888883 2333222 1111
Q ss_pred ---c-CCceEEEeeccccCCCCCcccccccccceeeechhc
Q 014856 295 ---D-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 331 (417)
Q Consensus 295 ---g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~ 331 (417)
. --|.|+||++||.|... .-+.-||+|+++|.-..+
T Consensus 96 ~~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 96 LLYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp CSTTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCC
T ss_pred cccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCC
Confidence 1 25999999999999764 446789999999986654
No 36
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.96 E-value=9.1e-06 Score=84.16 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=73.6
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecC----C-CCCcc-eeeeccC----------------CCceeecc--CH
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S-EGGSA-VFRLDYK----------------GQSACLAQ--SP 284 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~-egga~-~F~v~~~----------------~~~~~L~~--Sp 284 (417)
-.+++..|.+.+|+.|...||.||.||++-... . +...+ .|.+.-- |+.+.||- .|
T Consensus 25 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~ 104 (465)
T 3net_A 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCChH
Confidence 356788999999999999999999999985421 1 22233 6765322 57788872 23
Q ss_pred HH---HHHHhhcccC-CceEEEeeccccCCCCCcccccccccceeeechhccH-----HHHHHHHHHHHHH
Q 014856 285 QL---HKQMSICGDF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY-----SEVMDIVDCLFVT 346 (417)
Q Consensus 285 ql---~lq~li~~g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~-----~d~m~~~e~li~~ 346 (417)
.+ +.+......+ -|.|+||||||.|... .-+.-||+|+++|+-..++. -|++.++-+++..
T Consensus 105 ~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~ 174 (465)
T 3net_A 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEA 174 (465)
T ss_dssp HHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHH
Confidence 32 2222211112 3999999999999863 44678999999998654321 2577777666654
No 37
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.95 E-value=3.6e-05 Score=79.60 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=75.8
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC------CcceeeeccC-----CCceeeccCHHH-----HHH
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYK-----GQSACLAQSPQL-----HKQ 289 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~-----~~~~~L~~Spql-----~lq 289 (417)
-.+++..|.+.+|+.|...||.||.||+|..... +. +-+.|.+..- +..++|+--.+- |.+
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 4668999999999999999999999999987431 11 2346766433 678899854433 333
Q ss_pred Hhhcc-cC-CceEEEeeccccCCCCCcc--cccccc-cceeeechhccHHHHHHH
Q 014856 290 MSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDI 339 (417)
Q Consensus 290 ~li~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~ 339 (417)
..... .+ -|+|+||+|||+|.+.+.- -.-||+ |+|.+..+.+ ..++...
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~-~~~a~~e 170 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHST-KEEAENQ 170 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESS-HHHHHHH
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECC-HHHHHHH
Confidence 21111 22 3999999999999862211 235999 9999987775 4554444
No 38
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.91 E-value=2.8e-05 Score=81.22 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=41.4
Q ss_pred CceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 297 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 297 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
-|+|+||+|||+|.. +.+|+|+|+|+|..+... -++.|++.+++.++..+
T Consensus 348 iriFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 348 VKYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred ceEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 489999999999985 789999999999987532 13788888888887765
No 39
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.90 E-value=2.3e-05 Score=78.97 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=74.8
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-----C-CC-cceeee-ccCCCceeecc--CHHHHHH---Hhh-ccc
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-----E-GG-SAVFRL-DYKGQSACLAQ--SPQLHKQ---MSI-CGD 295 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-----e-gg-a~~F~v-~~~~~~~~L~~--Spql~lq---~li-~~g 295 (417)
.+++..|...+|+.|...||.||.||++..... + .. .+.|.+ +--|+.+.|+- .|.+..- .+- ...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 116 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRT 116 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCC
Confidence 567889999999999999999999999976421 1 12 345655 33467777772 2333221 110 122
Q ss_pred CCceEEEeeccccCCCC-----Ccccccccccceeeechhc-cH---HHHHHHHHHHHHH
Q 014856 296 FGRVFETGPVFRAEDSY-----THRHLCEFTGLDVEMEIKK-HY---SEVMDIVDCLFVT 346 (417)
Q Consensus 296 ~~rVfeIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~~-~~---~d~m~~~e~li~~ 346 (417)
--|.|+||+|||.|.+. ..-+.-||+|+++|.-..+ +. -+++.++.+++..
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~ 176 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAA 176 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999751 2346789999999986543 21 3566666666644
No 40
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.90 E-value=3.7e-05 Score=81.42 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=76.5
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--C-C-----Ccceeee-ccCCCceeeccCHH-----HHHHHhhc
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC 293 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~v-~~~~~~~~L~~Spq-----l~lq~li~ 293 (417)
.-.+++..|.+.+|+.|...||.||.||+|..... . | +.+.|.+ +--++.++|+--.. +|...+..
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 44778999999999999999999999999987531 1 2 2235655 34568899984442 44443221
Q ss_pred -ccC-CceEEEeeccccCCCCCccc----ccccccceeeechhccHHHHHHHHH
Q 014856 294 -GDF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVD 341 (417)
Q Consensus 294 -~g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~~~~~d~m~~~e 341 (417)
..+ -|+|+||+|||+|.+ . +| .-||+|+|+|.-..+ -.++...++
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~-~~~~~~e~~ 175 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHAD-EASLDQSYR 175 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESS-HHHHHHHHH
T ss_pred hhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCC-HHHHHHHHH
Confidence 122 399999999999986 3 33 369999999986553 334433333
No 41
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.89 E-value=3.6e-05 Score=79.58 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=76.0
Q ss_pred HHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCCc----ceeee-ccCCCceeecc--CHHHHHHHhhccc----
Q 014856 230 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLAQ--SPQLHKQMSICGD---- 295 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~~--Spql~lq~li~~g---- 295 (417)
.+++..|...+|+.|...||.||.||++..... ..|. +.|.+ +--|+.+.||- .|.+..- +....
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~-~~~~~~~~~ 121 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARL-LLGKGRSLL 121 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHH-HHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHH-HHhcCcccC
Confidence 568899999999999999999999999987542 1132 35665 34567777773 2333221 11111
Q ss_pred -CCceEEEeeccccCCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 296 -FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 296 -~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
--|.|+||+|||.|.+. .-+.-||+|+++|+-..++. -|++.++.+++..
T Consensus 122 ~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 122 LPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp SSEEEEECCEEECCCC------CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 25899999999999864 34678999999998654321 3566666665554
No 42
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.88 E-value=3.9e-05 Score=79.42 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=74.8
Q ss_pred HHHHHHhHHHHHHHHHh-hhCCcEeecCceeeecCC-------CC-Ccceeeecc---CCCceeeccCHHHHHHHhhcc-
Q 014856 228 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGSS-------EG-GSAVFRLDY---KGQSACLAQSPQLHKQMSICG- 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl-~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~~---~~~~~~L~~Spql~lq~li~~- 294 (417)
.-.+++..|.+.+|+.+ .+.||.||.||+|..... ++ +.+.|.+.- -+..++|+--.+-..=.+...
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 34678999999999999 999999999999987431 11 233566533 257889985543322222222
Q ss_pred -----cC-CceEEEeeccccCCCC---CcccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 295 -----DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 295 -----g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
.+ -|+|++|+|||+|.+. ...-.-||+|.|.+. |.. -+++.+.+++++.
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~-~e~~~~e~~~~i~ 199 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCT-PSQVKSEIFNSLK 199 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcC-HHHHHHHHHHHHH
Confidence 12 3899999999999863 211345999999996 554 3444444444443
No 43
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.83 E-value=3.6e-05 Score=79.62 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=76.2
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCCc-----ceeeeccCCCceeeccCHHHHHHHhhcc------
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS-----AVFRLDYKGQSACLAQSPQLHKQMSICG------ 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga-----~~F~v~~~~~~~~L~~Spql~lq~li~~------ 294 (417)
-.+++..|.+++++.+.+.||.||.||.|..... .|-. +.|.+. +..+||+-..+...=.+...
T Consensus 192 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~~ 269 (455)
T 2dq0_A 192 IVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDGK 269 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCch
Confidence 4668899999999999999999999999987531 1211 245442 56889997665544333221
Q ss_pred cC-CceEEEeeccccCCCCC------cccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 295 DF-GRVFETGPVFRAEDSYT------HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 295 g~-~rVfeIgp~FR~E~s~t------~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
.+ -|+|++|+|||+|.+.. ..-.-||+|.|++ .|.. -++..+..++++.
T Consensus 270 ~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~-pe~s~~~~~e~l~ 325 (455)
T 2dq0_A 270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSR-PEESWEWHEKIIR 325 (455)
T ss_dssp TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEEC-TTTHHHHHHHHHH
T ss_pred hCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecC-HHHHHHHHHHHHH
Confidence 22 38999999999998521 1123499999998 4554 3555555555554
No 44
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.83 E-value=3.9e-05 Score=82.58 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=74.8
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC-----CcceeeeccCCCceeeccCHHHHHHHhhcc-----
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql~lq~li~~----- 294 (417)
.-.+++..|.+.+|+.+.+.||.||.||+|..... -| +-+.|.++--+..++|+--..-..=.+...
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy 348 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 348 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEG
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhc
Confidence 45778999999999999999999999999987531 01 234666554567889985443222112221
Q ss_pred -cC-CceEEEeeccccCCCCCcc----cccccccceeeechhccHHHHHHH
Q 014856 295 -DF-GRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDI 339 (417)
Q Consensus 295 -g~-~rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~~~~~~d~m~~ 339 (417)
.+ -|+|+||+|||+|.+ +.+ -.-||||.|++. |.+ .+++...
T Consensus 349 r~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~-~~~~~~e 396 (642)
T 1qf6_A 349 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCT-EEQIRDE 396 (642)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EEC-GGGHHHH
T ss_pred cccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcC-HHHHHHH
Confidence 22 399999999999986 222 246999999998 654 3444333
No 45
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.80 E-value=4.4e-05 Score=79.35 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=79.6
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-C--C-----CcceeeeccCCCceeeccCHHHHHHHhhccc-C--
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD-F-- 296 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~li~~g-~-- 296 (417)
.-.+++.+|++++++.+.+.||.||.||.|+.... + | +.+.|.+.--+.++||.-..+.-+=.++..- +
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhcccccc
Confidence 56789999999999999999999999999987542 1 1 2346666433567899876665554443321 1
Q ss_pred ------CceEEEeeccccCCCC------CcccccccccceeeechhccHHHHHHHHHHHHH
Q 014856 297 ------GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 297 ------~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
=|+|++++|||+|.+. +.--.-||+|.|.+. |.. -++..+..++|+.
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~-pe~s~~e~e~ml~ 321 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTE-PEKSWEEFDRMIG 321 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeC-HHHHHHHHHHHHH
Confidence 2699999999999742 111234999999986 443 3555655555554
No 46
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.80 E-value=3.9e-05 Score=80.26 Aligned_cols=114 Identities=19% Similarity=0.194 Sum_probs=77.7
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC------cceeeeccC-----CCceeeccCHH-----HHHH
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHKQ 289 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~lq 289 (417)
-.+++..|.+.+|+.|.+ ||.||.||+|..... +.| -+.|.+..- +..++|+--.+ +|.+
T Consensus 70 g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 148 (501)
T 1nj1_A 70 GFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHh
Confidence 456788899999999999 999999999987541 122 235665432 56889985543 3444
Q ss_pred Hhhcc-cC-CceEEEeeccccCCCCCcc--cccccc-cceeeechhccHHHHHHHHHHHH
Q 014856 290 MSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 290 ~li~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~~e~li 344 (417)
..... .+ -|+|+||+|||+|...+.- =.-||+ |+|.+..+.+ .+++...+++++
T Consensus 149 ~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~-~e~a~~e~~~~l 207 (501)
T 1nj1_A 149 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT-ASEAEEQVERAV 207 (501)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS-HHHHHHHHHHHH
T ss_pred hhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECC-HHHHHHHHHHHH
Confidence 32221 23 3999999999999852211 234999 9999987775 556555554444
No 47
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.79 E-value=5.1e-05 Score=78.63 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=71.9
Q ss_pred HHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CC-----CcceeeeccCCCceeeccCHH-----HHHHHhhcc-
Q 014856 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG- 294 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spq-----l~lq~li~~- 294 (417)
-.+++..|.+.+|+.|...||.||.||+|..... .| +.+.|.++--|..++|+--.. +|.+.+-..
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r 127 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHR 127 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhcc
Confidence 4668899999999999999999999999987531 12 234677765678899984432 233322111
Q ss_pred ---cC-CceEEEeeccccCCCC--Cc-ccccccccceeeech
Q 014856 295 ---DF-GRVFETGPVFRAEDSY--TH-RHLCEFTGLDVEMEI 329 (417)
Q Consensus 295 ---g~-~rVfeIgp~FR~E~s~--t~-rHl~EFt~lE~e~a~ 329 (417)
.+ -|+|+||+|||+|.+. .. .-.-||+|+|+|.-.
T Consensus 128 ~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~ 169 (471)
T 3a32_A 128 SKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV 169 (471)
T ss_dssp GGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred ccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc
Confidence 33 4999999999999752 11 134699999999754
No 48
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.78 E-value=0.00013 Score=74.61 Aligned_cols=123 Identities=12% Similarity=0.172 Sum_probs=79.3
Q ss_pred ccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-C--C-----CcceeeeccCCCceeeccCHHHH
Q 014856 216 NRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLH 287 (417)
Q Consensus 216 ~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~ 287 (417)
.++.++... -.+++..|.+++++.+.+.||.||.||.|..... . | +.+.|.+. +..+||+-..+-.
T Consensus 156 ~G~~~~~p~----ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~ 229 (421)
T 1ses_A 156 SRSYALKGD----LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVV 229 (421)
T ss_dssp SSCCCEETH----HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHH
T ss_pred CCeEEECcH----HHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHH
Confidence 455555543 4568899999999999999999999999987431 0 1 22355543 5678998776655
Q ss_pred HHHhhccc------C-CceEEEeeccccCCC------CCcccccccccceeeechhccHHHHHHHHHHHH
Q 014856 288 KQMSICGD------F-GRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 288 lq~li~~g------~-~rVfeIgp~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
.-.++... + -|+|++|+|||+|-+ .+.--.-||+|+|++.....+.++..+..++++
T Consensus 230 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 230 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp HHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 54443221 2 389999999999952 111123599999987643220244444444443
No 49
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.78 E-value=9.4e-05 Score=77.47 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=69.1
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-------CC-Ccceeeecc---------CCCceeeccCHHHHHHH
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLDY---------KGQSACLAQSPQLHKQM 290 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~~---------~~~~~~L~~Spql~lq~ 290 (417)
...+++.+|++++++.+.+.||.||.||.|..... ++ +.+.|.+.- -+..+||.-..+..+=.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 45789999999999999999999999999987532 11 234676643 24678999776665432
Q ss_pred hhcc------cC-CceEEEeeccccCCCC------Ccccccccccceeee
Q 014856 291 SICG------DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEM 327 (417)
Q Consensus 291 li~~------g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~ 327 (417)
+... .+ =|+|++++|||+|.+. +.--.-||+|.|.+.
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~ 328 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV 328 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE
Confidence 2211 11 3799999999999741 111234999999975
No 50
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.74 E-value=0.00015 Score=76.41 Aligned_cols=117 Identities=11% Similarity=0.143 Sum_probs=79.4
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--------CCCcceeeeccCCCceeeccCHHHHHHHhhccc----
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 295 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--------egga~~F~v~~~~~~~~L~~Spql~lq~li~~g---- 295 (417)
.-.+++.+|++++++.+.+.||.||.||.|..... .-+.+.|.+. +..+||.-..+..+=.+....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~ 350 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 350 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccH
Confidence 45789999999999999999999999999987532 1134567764 367899866655433222211
Q ss_pred --C-CceEEEeeccccCCCC------CcccccccccceeeechhccHHHHHHHHHHHHHH
Q 014856 296 --F-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 296 --~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 346 (417)
+ =|+|++|+|||+|.+. +.--.-||+|.|.+.--...+++..+..++|+..
T Consensus 351 ~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 351 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred hhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHH
Confidence 1 3799999999999631 1223459999999853222123666666666543
No 51
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.74 E-value=0.00011 Score=76.78 Aligned_cols=119 Identities=14% Similarity=0.200 Sum_probs=80.0
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC--------CCCc-ceeeeccC-CCceeeccCHHHHHHHhhcc---
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGS-AVFRLDYK-GQSACLAQSPQLHKQMSICG--- 294 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--------egga-~~F~v~~~-~~~~~L~~Spql~lq~li~~--- 294 (417)
...++..+|++++++.+.+.||.||.||.|..... .-+. +.|.+.-- +.++||+-..+..+=.+...
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccC
Confidence 35678889999999999999999999999997532 1123 56766432 46889997776544322221
Q ss_pred ---cC-CceEEEeeccccCCC-----CCcccccccccceeeechhccHHHHHHHHHHHHHH
Q 014856 295 ---DF-GRVFETGPVFRAEDS-----YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 295 ---g~-~rVfeIgp~FR~E~s-----~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 346 (417)
.+ =|+|++|+|||+|-+ .+.--.-||+|.|.+.--....++..+..++|+..
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHH
Confidence 11 389999999999965 11112248999999874432114666666666543
No 52
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.72 E-value=0.00012 Score=75.21 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=74.6
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecC---CCCCc---ceeee-ccCCCceeecc--CHHHHHHHhhccc--C
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICGD--F 296 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga---~~F~v-~~~~~~~~L~~--Spql~lq~li~~g--~ 296 (417)
.-.+++..|.+.+|+.|...||.||.||+|.... ...|. +.|.+ +--|+.+.|+- .+.+-. ++.... -
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR-~~~~~~~~p 104 (464)
T 4g84_A 26 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFAR-YLAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHHHHH-HHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcCcHHHHH-HHHhcCCCC
Confidence 3467889999999999999999999999997642 11122 24543 33467788873 233322 111111 2
Q ss_pred CceEEEeeccccCCCC-Ccccccccccceeeechh-ccH---HHHHHHHHHHHHH
Q 014856 297 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIK-KHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 297 ~rVfeIgp~FR~E~s~-t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~ 346 (417)
-|.|+||++||.|... ..-+.-||+|+++|.-.. +.. -|+|.++-+++..
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 159 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 159 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHH
Confidence 4889999999999743 233567999999997542 111 3566666665543
No 53
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.70 E-value=7.6e-05 Score=78.33 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=81.0
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC------cceeeeccC-----CCceeeccCHH-----HHH
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 288 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 288 (417)
.-++++..|.+.+|+.|.+.||.||.||+|.+... ++| -+.|.+.-- +..++|+-..+ +|.
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 44678999999999999999999999999987542 222 335665432 56899985543 344
Q ss_pred HHhhc-ccC-CceEEEeeccccCCCCCc--ccccccccceeeechhccHHHHHHHHHHHH
Q 014856 289 QMSIC-GDF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 289 q~li~-~g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
..... ..+ -|+|+||+|||+|-+.+. .-.-||+|.|.+....+ .+++.+.++.++
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~-~e~a~~e~~~~l 191 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHAT-AEDAVSQLSDYW 191 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECC-HHHHHHHHHHHH
Confidence 43222 133 389999999999943221 13459999999997665 667776666665
No 54
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.66 E-value=0.00012 Score=76.60 Aligned_cols=118 Identities=14% Similarity=0.201 Sum_probs=73.1
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCCcc---eeee-ccCCCceeecc--CHHHHHHHhhccc--C
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGSA---VFRL-DYKGQSACLAQ--SPQLHKQMSICGD--F 296 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga~---~F~v-~~~~~~~~L~~--Spql~lq~li~~g--~ 296 (417)
.-.+++..|.+.+|+.|...||.||.||+|..... ..|.. .|.+ +--|+.+.|+- .+.+-. ++.... -
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR-~~~~~~~~p 157 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFAR-YLAMNKLTN 157 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHH-HHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHH-HHHhCCCCC
Confidence 44678899999999999999999999999975321 11211 4543 33467777873 222221 111111 2
Q ss_pred CceEEEeeccccCCCCC-cccccccccceeeechh-cc---HHHHHHHHHHHHHH
Q 014856 297 GRVFETGPVFRAEDSYT-HRHLCEFTGLDVEMEIK-KH---YSEVMDIVDCLFVT 346 (417)
Q Consensus 297 ~rVfeIgp~FR~E~s~t-~rHl~EFt~lE~e~a~~-~~---~~d~m~~~e~li~~ 346 (417)
-|.|+||+|||.|.... .-+.-||+|+++|+-.. +. --|+|.++-+++..
T Consensus 158 ~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 158 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp EEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 48899999999997522 23567999999998642 11 13566666665543
No 55
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.59 E-value=9.3e-05 Score=76.92 Aligned_cols=117 Identities=10% Similarity=0.175 Sum_probs=79.6
Q ss_pred HHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-C--C-----CcceeeeccCCCceeeccCHHHHHHHhhccc---
Q 014856 227 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD--- 295 (417)
Q Consensus 227 ~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~li~~g--- 295 (417)
....+++.+|++++++.+.++||.||.||.|..... + | +.+.|.+.--+..+||.-..+..+= .+..+
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~-~l~~~~i~ 283 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIA-AYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHH-HHTTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHH-HHHhcccc
Confidence 346789999999999999999999999999987542 1 1 1245666433678999877666653 23222
Q ss_pred ----C-CceEEEeeccccCC-CCC-----cccccccccceeeechhccHHH--HHHHHHHHHHH
Q 014856 296 ----F-GRVFETGPVFRAED-SYT-----HRHLCEFTGLDVEMEIKKHYSE--VMDIVDCLFVT 346 (417)
Q Consensus 296 ----~-~rVfeIgp~FR~E~-s~t-----~rHl~EFt~lE~e~a~~~~~~d--~m~~~e~li~~ 346 (417)
+ =|+|++++|||+|. +.+ .--.-||+|.|.+. |.. -++ ..+..++|+..
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~-pe~~~s~~e~e~~~~~ 345 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCS-PRQEESWRHLEDMITT 345 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeC-cchHHHHHHHHHHHHH
Confidence 1 37999999999996 311 11233999999974 432 233 55555555443
No 56
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.58 E-value=0.00013 Score=70.41 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=68.2
Q ss_pred HHHHHH--HHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeec--cCHHHHHHHhhcc---cCCceEEEeecccc
Q 014856 236 VGNIFR--QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSICG---DFGRVFETGPVFRA 308 (417)
Q Consensus 236 i~~~iR--~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~--~Spql~lq~li~~---g~~rVfeIgp~FR~ 308 (417)
|.+.+| +.|...||.||.||++-....=.. +.| ++--|+.+.|| ..|.+. ..-+.. .--|.|++|+|||.
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a-~~~~~~~~~~p~R~~y~g~vfR~ 82 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVL-NHRKRYSPDSQIKVWYADFVYRY 82 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHH-HHHTTCTTCCCEEEECCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHH-HHHhhcCCCCceEEEEeceEEec
Confidence 344455 999999999999999987543222 244 34457778887 334444 222221 23599999999999
Q ss_pred CCCCCcccccccccceeeechhccH---HHHHHHHHHHHHH
Q 014856 309 EDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 346 (417)
Q Consensus 309 E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 346 (417)
|.+.. -||||+++|+-..++. -|++.++-+++..
T Consensus 83 e~~~~----Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 83 SGSDL----VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp ETTEE----EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCC----CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 98633 6999999998654432 3455555555543
No 57
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.57 E-value=0.00018 Score=75.51 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=77.7
Q ss_pred HHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC---CCC------cceeeeccC-----CCceeeccCHH-----HHH
Q 014856 228 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 288 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 288 (417)
.-++++..|.+.+|+.+.+.||.||.||+|..... +.| -+.|.+..- +..++|+--.+ +|.
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~ 138 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYA 138 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHH
Confidence 34678899999999999999999999999987531 122 124544221 23588874432 344
Q ss_pred HHhhc-ccC-CceEEEeeccccCCCCCcc--cccccccceeeechhccHHHHHHHHHHHHH
Q 014856 289 QMSIC-GDF-GRVFETGPVFRAEDSYTHR--HLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 345 (417)
Q Consensus 289 q~li~-~g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 345 (417)
+.... .++ -|+|++|+|||.|-+.++- =.-||+|.|.+..|.+ .++..+.++.++.
T Consensus 139 ~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~-~e~a~~E~~~~l~ 198 (519)
T 4hvc_A 139 KWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT-MEEAAEEVLQILD 198 (519)
T ss_dssp HHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred hhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecC-HHHHHHHHHHHHH
Confidence 43222 123 4899999999999532211 2249999999998875 5666666655543
No 58
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.46 E-value=0.00016 Score=75.99 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=76.2
Q ss_pred HHHHHHhHHHHHHHH-HhhhCCcEeecCceeeecCC-------CC-Ccceeeec-----c--------------------
Q 014856 228 GIFRIQSQVGNIFRQ-FLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLD-----Y-------------------- 273 (417)
Q Consensus 228 ~i~~~rs~i~~~iR~-fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~-----~-------------------- 273 (417)
.-.++...|.+.+++ ++.+.||.||.||+|.+... ++ +-+.|.+. .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 446688899999996 68899999999999987431 11 12345552 0
Q ss_pred ------CCCceeeccCHHH-----HHHHhhc-ccCC-ceEE-EeeccccCCC--CCcccccccccceeeechhccHHHHH
Q 014856 274 ------KGQSACLAQSPQL-----HKQMSIC-GDFG-RVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVM 337 (417)
Q Consensus 274 ------~~~~~~L~~Spql-----~lq~li~-~g~~-rVfe-Igp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m 337 (417)
-+..+||+-..+. |...... ..+. |+|+ ||+|||+|.. +..--.-||+|.|++. |.+ -++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~-pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGT-KEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEE-HHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeC-hHHHH
Confidence 2467888854432 2221111 1122 7999 9999999943 2223345999999998 664 67777
Q ss_pred HHHHHHH
Q 014856 338 DIVDCLF 344 (417)
Q Consensus 338 ~~~e~li 344 (417)
+..++++
T Consensus 387 ee~ee~i 393 (522)
T 2cja_A 387 KCAEELH 393 (522)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777777
No 59
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.28 E-value=0.00056 Score=71.54 Aligned_cols=33 Identities=3% Similarity=0.075 Sum_probs=29.4
Q ss_pred HHHHHhHHHHHHHHHhh--hCCcEeecCceeeecC
Q 014856 229 IFRIQSQVGNIFRQFLL--SENFVEIHTPKLIAGS 261 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~--~~gF~EV~TP~l~~~~ 261 (417)
-.+++..|.+.+|+.+. +.||.||.||+|.+..
T Consensus 38 G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 46689999999999999 8999999999998753
No 60
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.08 E-value=0.00098 Score=69.93 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=49.4
Q ss_pred eeeccC--HHHHHHHhh--cccC--CceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 278 ACLAQS--PQLHKQMSI--CGDF--GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 278 ~~L~~S--pql~lq~li--~~g~--~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
..||.| |-|...... ..+. -|+||||+|||.+..-+.+|.+||++++..+... .++.|++.+++.++..+
T Consensus 181 svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 181 LTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred cccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 567755 444443221 1111 3899999999986531567999999999998773 24889999999988765
No 61
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.05 E-value=0.00072 Score=67.21 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=80.7
Q ss_pred HHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecCC-CC-C------cceeeeccC------------------------
Q 014856 227 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G------SAVFRLDYK------------------------ 274 (417)
Q Consensus 227 ~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-g------a~~F~v~~~------------------------ 274 (417)
...-+++..|.+++|+ ..+.||.||.||.|..... ++ | -..|.+.-|
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 3556788899999999 8899999999999987532 11 1 124554222
Q ss_pred -CCceeeccCH-----HHHHHH-hhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHHHHHHHH
Q 014856 275 -GQSACLAQSP-----QLHKQM-SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 275 -~~~~~L~~Sp-----ql~lq~-li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 347 (417)
+.++||.-.. ++|... .+...--|+..+|+|||.|.|.+...+-+|+|.|+-. |.. -+++.+..++|+..+
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~t-pEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGT-PDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EES-HHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeC-HHHHHHHHHHHHHHH
Confidence 2367887544 444532 2322224666799999999987777788999999755 343 677777777777554
No 62
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.0026 Score=66.88 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=49.2
Q ss_pred eeec--cCHHHHHHHhhc--cc--CCceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 278 ACLA--QSPQLHKQMSIC--GD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 278 ~~L~--~Spql~lq~li~--~g--~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
..|| .+|-|..+...- .+ --|+||||+|||.+...+.+|.+||.|++.-+... -++.|+...++.++..+
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4566 446555553321 11 23899999999986531356999999999988764 14889999999988765
No 63
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=96.99 E-value=0.002 Score=65.78 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhC--------CcEeecC-ceeeecC--------CC-CCcce-eeeccCCCceeecc--CHHHHHHHhhcc
Q 014856 236 VGNIFRQFLLSE--------NFVEIHT-PKLIAGS--------SE-GGSAV-FRLDYKGQSACLAQ--SPQLHKQMSICG 294 (417)
Q Consensus 236 i~~~iR~fl~~~--------gF~EV~T-P~l~~~~--------~e-gga~~-F~v~~~~~~~~L~~--Spql~lq~li~~ 294 (417)
+...||++|... ||.|+.+ |.+.+.. .. .-|.. --+-|++....||. ||-+.. ++..
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~--~l~~ 130 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWD--LLHA 130 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHH--HHHT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHH--HHHH
Confidence 444555555554 8999999 6666421 01 11111 01114566677874 454443 3445
Q ss_pred cCCceEEEeeccccCCCCCccccccccccee
Q 014856 295 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 325 (417)
Q Consensus 295 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~ 325 (417)
+..|+|++|.|||.+.. +..|.|.|.++|-
T Consensus 131 ~~~k~~~~G~VyR~D~~-da~h~n~fhQ~eg 160 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQI-DSQHYPIFHQLEA 160 (415)
T ss_dssp TCSEEEEEEEEECCCCC-BTTBCSEEEEEEE
T ss_pred CCCCEEEeeeEEeccch-hhhhhHHhcCCCc
Confidence 67899999999999974 7899999999994
No 64
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.83 E-value=0.0015 Score=70.73 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHHHHHhh-hCCcEeecCceeeec
Q 014856 229 IFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAG 260 (417)
Q Consensus 229 i~~~rs~i~~~iR~fl~-~~gF~EV~TP~l~~~ 260 (417)
=.+++..|.+.+|+.|. ..||.||.||+|.+.
T Consensus 100 G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 100 GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 46789999999999998 569999999999873
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.75 E-value=0.0026 Score=67.56 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=49.6
Q ss_pred eeec--cCHHHHHHHhh--ccc--CCceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 278 ACLA--QSPQLHKQMSI--CGD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 278 ~~L~--~Spql~lq~li--~~g--~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
..|| .+|-|..+... ..+ =-|+||||+|||++...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 200 sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4566 44655554332 112 24899999999986521567999999999988763 14889999999998865
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.73 E-value=0.0028 Score=67.50 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=49.6
Q ss_pred eeec--cCHHHHHHHhh--ccc--CCceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 278 ACLA--QSPQLHKQMSI--CGD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 278 ~~L~--~Spql~lq~li--~~g--~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
..|| .+|-|..+... ..+ =-|+||||+|||++...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4566 44655554332 112 24899999999986521567999999999988763 14889999999998865
No 67
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.71 E-value=0.0029 Score=67.48 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=49.6
Q ss_pred eeec--cCHHHHHHHhh--ccc--CCceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 278 ACLA--QSPQLHKQMSI--CGD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 278 ~~L~--~Spql~lq~li--~~g--~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
..|| .+|-|..+... ..+ =-|+||||+|||++...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4566 44655554332 112 24899999999986521567999999999988763 14889999999998865
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.62 E-value=0.0034 Score=67.13 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=49.5
Q ss_pred eeec--cCHHHHHHHhh--ccc--CCceEEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 278 ACLA--QSPQLHKQMSI--CGD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 278 ~~L~--~Spql~lq~li--~~g--~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
..|| .+|-|..+... ..+ =-|+||||+|||++...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4566 44655554332 112 24899999999986521567999999999988763 14889999999998865
No 69
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.38 E-value=0.0063 Score=62.78 Aligned_cols=106 Identities=10% Similarity=0.038 Sum_probs=57.9
Q ss_pred HHHHhHHHHHHHHHh-hhCC-cEeecCceeeecCCCCCcceeeeccCCCceeecc-CHHHHHHHh---hcc---cC-Cce
Q 014856 230 FRIQSQVGNIFRQFL-LSEN-FVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQ-SPQLHKQMS---ICG---DF-GRV 299 (417)
Q Consensus 230 ~~~rs~i~~~iR~fl-~~~g-F~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~-Spql~lq~l---i~~---g~-~rV 299 (417)
..+|..|.+.+|.-+ ..+| +.||.||+......-|.-+-|. +||+- +-|-..... +-. .+ =|+
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~i 176 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-------GGLRENLLHGALEHYVNCLDLVNKRLPYGL 176 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-------ceECCCCChhHHHHHhhhhhhccccCCeEE
Confidence 468899998555555 4466 7779999854433333333443 78885 333333222 111 11 268
Q ss_pred EEEeeccccCCC-CCcccc----cccccceeeechhccHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDS-YTHRHL----CEFTGLDVEMEIKKHYSEVMDIVDCLF 344 (417)
Q Consensus 300 feIgp~FR~E~s-~t~rHl----~EFt~lE~e~a~~~~~~d~m~~~e~li 344 (417)
.+||+|||+|.. .+.+|- -|||+.|++. |.+ -++..+..+.++
T Consensus 177 aqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~-Pe~~~e~~~~~~ 224 (459)
T 3ikl_A 177 AQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTP-PRTSNQWLDFWL 224 (459)
T ss_dssp EEEEEEECCC----------CCCCEEEEEEEEE-EEC-GGGHHHHHHHHH
T ss_pred EEEeeeeecccccccCCCCcccccceeeeeEEE-EeC-hhHHHHHHHHHH
Confidence 999999999941 133332 5999999974 432 334444444433
No 70
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.91 E-value=0.015 Score=59.99 Aligned_cols=113 Identities=11% Similarity=0.062 Sum_probs=67.7
Q ss_pred HHHHhHHHHHHHHH-h-hhCCcEeecCceeeecCCCCC--------ccee---------------ee--ccCCCceeecc
Q 014856 230 FRIQSQVGNIFRQF-L-LSENFVEIHTPKLIAGSSEGG--------SAVF---------------RL--DYKGQSACLAQ 282 (417)
Q Consensus 230 ~~~rs~i~~~iR~f-l-~~~gF~EV~TP~l~~~~~egg--------a~~F---------------~v--~~~~~~~~L~~ 282 (417)
.+++..|.+++++. + ...|+.||.||+|.+...-.+ ++-+ .+ .+++..+||+-
T Consensus 62 ~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRP 141 (454)
T 1g5h_A 62 VELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRA 141 (454)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECS
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecc
Confidence 67899999988876 4 589999999999987542111 1111 11 23456778885
Q ss_pred --CHHH---HHHHhhcc--cC-CceEEEeeccc---cCCCCCccc----ccccccceeeechhccHHHHHHHHHHHHHH
Q 014856 283 --SPQL---HKQMSICG--DF-GRVFETGPVFR---AEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 346 (417)
Q Consensus 283 --Spql---~lq~li~~--g~-~rVfeIgp~FR---~E~s~t~rH----l~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 346 (417)
+|-. |+..+-.. .+ =++++||+||| ||-+ + +| .-||||.|++. |.+ .++..+..+.++..
T Consensus 142 eta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~-pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 142 TLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTP-TRTSSQWLDFWLRH 216 (454)
T ss_dssp CSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EEC-HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeC-HhhHHHHHHHHHHH
Confidence 3222 23322111 33 38999999999 6964 2 33 46999999985 554 66666555554443
No 71
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.82 E-value=0.036 Score=51.14 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCC-C-----CCcceeee-cc-CCCceeeccCHHHHHHHhhcc----cCC--ce
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DY-KGQSACLAQSPQLHKQMSICG----DFG--RV 299 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~-~~~~~~L~~Spql~lq~li~~----g~~--rV 299 (417)
..+.+.+|+.|...||.||-|-.+++... + .......+ |- -.....||+|-=--+=..+.. +.. |+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~l 86 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKF 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEE
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeE
Confidence 35678899999999999999999987431 1 11223333 22 224467887743322223332 332 89
Q ss_pred EEEeeccccCCCCC-----cccccccccceeeech-------------hccHHHHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDSYT-----HRHLCEFTGLDVEMEI-------------KKHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 300 feIgp~FR~E~s~t-----~rHl~EFt~lE~e~a~-------------~~~~~d~m~~~e~li~~i 347 (417)
||||+||+.++... ..+..|..+|-.-+.. . ++.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~-df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 87 FEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENT-SVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHH-HHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCc-CHHHHHHHHHHHHHHh
Confidence 99999999765211 1234577777765544 2 3778877777777654
No 72
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.55 E-value=0.037 Score=58.87 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhCCcEeecCceeeecC--------CCCCcceeee-ccCC-CceeeccCHHHHHHHhhccc-----CCce
Q 014856 235 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSICGD-----FGRV 299 (417)
Q Consensus 235 ~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~egga~~F~v-~~~~-~~~~L~~Spql~lq~li~~g-----~~rV 299 (417)
.+.+.+|+.|...||.||.|+.+++.. ..++...+.+ |-.. ....||+|-=--+=..+..+ -=|+
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrl 474 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 457789999999999999999998642 1122334444 2222 33577876322222223222 2379
Q ss_pred EEEeeccccCCCCCcccccccccceeeechh-ccHHHHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 300 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 347 (417)
||||+|||.... +.+|.+|+.++..-+... .++.++...++.++..+
T Consensus 475 FEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 475 FEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 999999998763 457888999998765542 23677777777666554
No 73
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.46 E-value=0.059 Score=59.29 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCCC----CCcc-eeee-ccCC-CceeeccCHHHHHHHhhcc----cC--CceE
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSE----GGSA-VFRL-DYKG-QSACLAQSPQLHKQMSICG----DF--GRVF 300 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~e----gga~-~F~v-~~~~-~~~~L~~Spql~lq~li~~----g~--~rVf 300 (417)
..+.+.+|++|...||.|+.|..+++...- +... .+.+ |... ....||+|-=--+=..+.. +. -|+|
T Consensus 496 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlF 575 (795)
T 2rhq_B 496 QHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLY 575 (795)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEE
Confidence 456778999999999999999999865311 1223 3444 2222 3446776543222222322 22 3899
Q ss_pred EEeeccccCCCCCcccccccccceeeechh------------ccHHHHHHHHHHHHHHH
Q 014856 301 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 301 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 347 (417)
|||+|||.+.. +..| +||.++..-+... -++.|+...++.++..+
T Consensus 576 EiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 576 EIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999997542 2256 8999998765542 14889999999998865
No 74
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.99 E-value=0.084 Score=48.62 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhCCcEeecCceeeecCC-C-----CCcceeee-ccC-CCceeeccCHHHHHHHhh----cccCC--ce
Q 014856 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYK-GQSACLAQSPQLHKQMSI----CGDFG--RV 299 (417)
Q Consensus 234 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~-~~~~~L~~Spql~lq~li----~~g~~--rV 299 (417)
..+.+.+|+.|...||.||-|-.+++... + .......+ |-. ..-..||+|-=--+=..+ ..+.. |+
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~l 86 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYL 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeE
Confidence 35678899999999999999999987431 1 11122333 222 345688887433222222 33444 89
Q ss_pred EEEeeccccCCCC-----Ccccccccccceeeechh------------ccHHHHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDSY-----THRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 300 feIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 347 (417)
||||+||+.++.. ...+..|..+|-.-+... -++.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 87 FEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999975421 113456777777655441 14788888888887665
No 75
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=91.83 E-value=0.56 Score=51.48 Aligned_cols=106 Identities=21% Similarity=0.148 Sum_probs=69.1
Q ss_pred HhHHHHHHHHHhhhCCcEeecCceeeecC----CCCCcceeee-ccC-CCceeeccCHHHHHHHhhcc----c-C--Cce
Q 014856 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSAVFRL-DYK-GQSACLAQSPQLHKQMSICG----D-F--GRV 299 (417)
Q Consensus 233 rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga~~F~v-~~~-~~~~~L~~Spql~lq~li~~----g-~--~rV 299 (417)
...+.+.+|++|...||.|+-|-.+++.. ...+...+.+ |-. .....||+|-=--+=..+.. + . -|+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrl 570 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALL 570 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEE
Confidence 45567889999999999999999888642 1112233444 222 23346776642222222321 2 2 489
Q ss_pred EEEeeccccCCCCCcccccccccceeeechh-----------ccHHHHHHHHHHHHHHH
Q 014856 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-----------KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 300 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-----------~~~~d~m~~~e~li~~i 347 (417)
||||+||| + .||.++..-+... -++.|+...++.++..+
T Consensus 571 FEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 571 FEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 99999999 2 6788888766553 14889999999998865
No 76
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=85.65 E-value=5.6 Score=32.32 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=29.6
Q ss_pred cCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 138 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 138 ~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.+.+|++|.|.|.+... ..|.+||++.....|.+|
T Consensus 66 ~l~~Gdvv~i~g~vk~~------~~g~~eL~~g~~~~i~~~ 100 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREG------YYGGLECTANYVEILKKG 100 (105)
T ss_dssp CCCTTCEEEEEEEEEEC------TTSSEEEEEEEEEEEECC
T ss_pred ccCCCCEEEEEEEEEEc------cCCCEEEEeCCceEEEec
Confidence 69999999999988653 235799999999999888
No 77
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=84.37 E-value=4.2 Score=33.85 Aligned_cols=55 Identities=9% Similarity=0.224 Sum_probs=38.9
Q ss_pred EEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCC
Q 014856 117 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTP 182 (417)
Q Consensus 117 iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~-~~lP 182 (417)
|+||+--+ ..+.++.+.+|+.|.|+|.+....+ .| ..++|+++.|+.|+.. ..=|
T Consensus 49 i~vv~~Gk-------~AE~~~~l~kGs~V~VeGrL~trs~--~G--~kl~l~a~~Ie~l~~~~~~~~ 104 (115)
T 3fhw_A 49 ISAVALGD-------LALLLADTPLGTEMQVQGFLAPARK--DS--VKVKLHLQQARRIAGSMGRDP 104 (115)
T ss_dssp EEEEEETH-------HHHHHTTCCTTCEEEEEEEEEESST--TC--SSEEEEEEEEEECCCSCCC--
T ss_pred EEEEEEhH-------HHHhhhccCCCCEEEEEEEEEECCC--CC--CEEEEEEEEEEEcCCCCCCCC
Confidence 78887631 2233477999999999999986432 22 3599999999999776 4334
No 78
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=84.23 E-value=3.9 Score=33.05 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=33.4
Q ss_pred EEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 117 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 117 iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
++|++-.+. .+ ...+.|.+|+.|.|+|.+... ....|.+. ++|++++|+.|+.
T Consensus 50 ~~vv~~g~~---Ae---~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHE---NQ---AITHSITVGSRITVQGFISCH-KAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESST---TH---HHHTTCCTTCEEEEEEEEEC---------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHH---HH---HHHhhCCCCCEEEEEEEEEec-cCCCCCEE-EEEEEEEEEECcC
Confidence 888877431 11 234669999999999999865 22223223 8999999998863
No 79
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=75.99 E-value=12 Score=30.63 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=41.6
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEE-EEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G-~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.+.|++++.. +...+|...|..|+++.|.| .|.......+...+.+||....-..+.+|
T Consensus 50 ~G~I~at~~~------~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 50 SGEIRATAFN------DFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp TEEEEEEECH------HHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEES
T ss_pred CCeEEEEECH------HHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEEC
Confidence 3389988863 33456778899999999996 55544434444456799998877777766
No 80
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=75.53 E-value=19 Score=28.48 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=34.0
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHH-cCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~-~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.++.|-+++--+. +. .+..|++|.|.|.+..- .+.+||.+.+.-.+.+|
T Consensus 47 eTG~I~~tlW~~~----------~~~~i~~Gdvv~i~g~v~~~-------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 47 DTGSIRGTLWNEL----------ADFEVKKGDIAEVSGYVKQG-------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp TTEEEEEEEEGGG----------GGCCCCTTCEEEEEEEEEEC---------CEEEEEEEEEEEECC
T ss_pred CCCcEEEEEECCc----------cccccCCCCEEEEEEEEEEc-------CCeEEEEECCCcEEEEC
Confidence 5667777654211 11 69999999999987542 24799999988777654
No 81
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=75.09 E-value=18 Score=31.61 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=37.8
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
|..|.|++-.+.. ...-.....+..|++|.|.|.|.. -.++.+|.+.+|.++..
T Consensus 75 G~~I~cv~w~~~~---~~~~~~~~~l~~G~~VrV~G~v~~-------fr~~rqI~~~~i~~v~d 128 (159)
T 3kf6_A 75 GMVLRVVFIIQDD---FSMSKRAISMSPGNVVCVFGKINS-------FRSEVELIAQSFEELRD 128 (159)
T ss_dssp SCEEEEEEEGGGC---HHHHHHHTTCCTTCEEEEEEEEEC-------SSSSCEEEEEEEEEECS
T ss_pred CCeEEEEEEccCC---CCcccccccCCCCCEEEEEEEEEe-------eCCEEEEEEEEEEECCC
Confidence 3369999876432 111122345899999999999963 23568999999998874
No 82
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=73.37 E-value=11 Score=30.80 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=36.2
Q ss_pred ceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 014856 115 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 115 ~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~~ 178 (417)
..++|++-. +......+.|.+|+.|.|+|.+....- ...|.+ ..+||.++.|.+|++.
T Consensus 50 ~~~~v~~wg------~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 50 DYVNCTLWR------KTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEEEH------HHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEEEEC------HHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 347777763 111223456999999999999875321 122333 2489999999998754
No 83
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=69.22 E-value=19 Score=29.07 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=34.8
Q ss_pred EEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEee
Q 014856 117 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 176 (417)
Q Consensus 117 iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls 176 (417)
++|++-- ...+ +..|.+|+.|.|+|.+....- ++ ..+.||++.|+.+.
T Consensus 55 i~vv~~g-------k~Ae-~~~l~KG~~v~veGrL~~rs~--~~--~~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 55 IPARILG-------RQAE-EWQYRQGDCATVEGFLAQKSR--RS--LMPMLRIQNIKEYK 102 (103)
T ss_dssp EEEEEEH-------HHHH-HSTTCTTCEEEEEEEEEESSS--SC--CCEEEEEEEEEECC
T ss_pred EEEEEEh-------HHhh-hhccCCCCEEEEEEEEEECcc--CC--ccEEEEEEEEEEcC
Confidence 6777652 2233 567999999999999986432 22 36999999998763
No 84
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=69.10 E-value=7.5 Score=32.05 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=43.8
Q ss_pred ccccccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHH-HcCCCCcEEEEEEEEecCCccCCCC
Q 014856 97 ALNGSLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDVEIKGA 161 (417)
Q Consensus 97 ~l~~~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~-~~l~~es~V~V~G~v~~~~~~~~~~ 161 (417)
++.....+..|.|+|. .++.|+|-+... .|. ..+++++-|.|.|.|-+.-
T Consensus 30 ~a~~~~Dd~~V~L~G~Iv~~~~~d~Y~F~D~TG~I~VeId~~---------~w~g~~v~p~~~Vri~GevDkd~------ 94 (109)
T 1nnx_A 30 SAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHK---------RWNGVTVTPKDTVEIQGEVDKDW------ 94 (109)
T ss_dssp HHTTSCSSEEEEEEEEEEEEEETTEEEEEETTEEEEEECCGG---------GSTTCCCCTTSCEEEEEEEEEET------
T ss_pred HHhhCcCCCeEEEEEEEEEEeCCCeEEEECCCccEEEEEChh---------hcCCcccCCCCEEEEEEEECCCC------
Confidence 3333455677777777 667788776532 132 3589999999999997521
Q ss_pred ceeEEEEEeEEEEee
Q 014856 162 TQQVEVQIKKLYCVS 176 (417)
Q Consensus 162 t~~~El~~~~i~vls 176 (417)
...||.|..|++|.
T Consensus 95 -~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 95 -NSVEIDVKQIRKVN 108 (109)
T ss_dssp -TEEEEEEEEEEEC-
T ss_pred -CceEEEEEEEEEcc
Confidence 24689999998874
No 85
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=65.81 E-value=21 Score=31.03 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=36.5
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~~ 178 (417)
.+.|++-. +......+.|.+|+.|.|+|.+....- ...|.+ -.+||.+..|.+|..-
T Consensus 57 ~i~vv~wg------~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 57 WHRIAFFN------RLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEET------HHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEEh------HHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 46777652 211223456999999999999875321 122433 2499999999998654
No 86
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=65.80 E-value=8.7 Score=42.09 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=66.0
Q ss_pred HHHHHHHHhhhCCcEeecCceeeecCC----CCCcceeee-ccC-CCceeeccCHHHHHHHhh----cccC--CceEEEe
Q 014856 236 VGNIFRQFLLSENFVEIHTPKLIAGSS----EGGSAVFRL-DYK-GQSACLAQSPQLHKQMSI----CGDF--GRVFETG 303 (417)
Q Consensus 236 i~~~iR~fl~~~gF~EV~TP~l~~~~~----egga~~F~v-~~~-~~~~~L~~Spql~lq~li----~~g~--~rVfeIg 303 (417)
..+.+|+.|...||.||-|-.+++... .++.....+ |-. ..--.||+|-=--+=..+ ..+. -|+||||
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG 573 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESG 573 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEee
Confidence 355789999999999999999986321 111222333 222 244578887433222222 2233 3899999
Q ss_pred eccccCCCCCcccccccccceeeechh------------ccHHHHHHHHHHHHHHH
Q 014856 304 PVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 347 (417)
Q Consensus 304 p~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 347 (417)
+||+..+. +..+..|..+|-+-++.. -++.|+...+|.++..+
T Consensus 574 ~Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 574 LRFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eEEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 99987542 223334555554433221 14788888888888654
No 87
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=63.68 E-value=22 Score=29.85 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=37.2
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCce-eEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t~-~~El~~~~i~vls~~ 178 (417)
.+.|++-. +......+.|.+||.|.|+|.+....- ...|.+. .+||.+++|.+|...
T Consensus 50 ~~~v~~wg------~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 50 FIDARLFG------RTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEH------HHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEEc------HHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 46777652 111223456999999999999875321 1223332 389999999998753
No 88
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=62.47 E-value=34 Score=34.38 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=39.2
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
+++.|.|++... ++.+-+.+..|..||.|.|.|-++. | .|.++++.+++.+
T Consensus 312 ~~~~i~c~ayep----tk~fr~~vr~L~~GD~V~v~G~v~~---------g--tLnvEk~~v~~l~ 362 (402)
T 3au7_A 312 KFGSVKCAAFEP----TKQFRNVIRLLRKGDVVEVYGSMKK---------D--TINLEKIQIVELA 362 (402)
T ss_dssp TTEEEEEEECGG----GTTHHHHHTTCCTTCEEEEEEEEET---------T--EEEEEEEEEEECC
T ss_pred CCCEEEEEEEcc----chHHHHHHhcCCCCCEEEEEEeecC---------C--EEEEEEEEEcccC
Confidence 455788887642 3456677889999999999999753 2 6999999999774
No 89
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=61.18 E-value=44 Score=27.25 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=32.6
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEec-CC-ccCCCCc-eeEEEEEeEEEEee
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-PD-VEIKGAT-QQVEVQIKKLYCVS 176 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~-~~-~~~~~~t-~~~El~~~~i~vls 176 (417)
....|-|++..+... . -.+.+|+.|.|.|.+.. .. ....|.+ --+||.+.+|..|+
T Consensus 48 ~~Dfi~ivvw~klAe-------~-~~~~kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 48 TKDYLPITISNRLFE-------G-MNLEVGTRVKIEGQLRSYNRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp CEEEEEEEEEGGGST-------T-CCCCTTCEEEEEEEEEEEECC--------EEEEEEEEEEEEEC
T ss_pred CCcEEEEEEEhHHhh-------H-HhhcCCCEEEEEEEEEecceEECCCCCEEEEEEEEEEEEEEcc
Confidence 344577777643211 1 13569999999999853 11 1112322 24899999999875
No 90
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=59.50 E-value=27 Score=30.22 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=35.4
Q ss_pred ceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 014856 115 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 115 ~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~~ 178 (417)
..+.|++-. +......+.|.+|+.|.|+|.+....- ...|.+ ..+||.+++|.+|...
T Consensus 63 ~~~~v~~wg------~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 63 DFFRIVTFG------RLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEEEH------HHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEEEEC------HHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 346777652 112223456999999999999875321 112333 2389999999999754
No 91
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=54.95 E-value=17 Score=30.45 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=29.6
Q ss_pred HHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 014856 136 VRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 178 (417)
Q Consensus 136 ~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~~ 178 (417)
.+.|.+|+.|.|+|.+....- ...|.+ ..+||.++.|.+|++.
T Consensus 83 ~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 83 YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred HhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 456999999999999985321 122333 2489999999998753
No 92
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=50.91 E-value=42 Score=27.91 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=34.1
Q ss_pred ccCCcEEEEEee----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCcee
Q 014856 101 SLKDQEVLIRGR----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ 164 (417)
Q Consensus 101 ~~~G~~V~vrgr----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~ 164 (417)
...|+.|++-|+ +++.|+|.++.. .+ ...+.+|.|.|+|.. .
T Consensus 19 ~fvgk~VrivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p---~~---------~~l~~~vEViG~V~~----------~ 76 (121)
T 3kdf_A 19 QFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEP---LD---------EEISGIVEVVGRVTA----------K 76 (121)
T ss_dssp GGTTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSC---CS---------SCCCSEEEEEEEECT----------T
T ss_pred hhCCCeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCC---CC---------cccCcEEEEEEEECC----------C
Confidence 577788887777 345566655431 11 122459999999863 2
Q ss_pred EEEEEeEEEEeec
Q 014856 165 VEVQIKKLYCVSR 177 (417)
Q Consensus 165 ~El~~~~i~vls~ 177 (417)
.+|.+..+..++.
T Consensus 77 ~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 77 ATILCTSYVQFKE 89 (121)
T ss_dssp SCEEEEEEEECCC
T ss_pred CeEEEEEEEecCC
Confidence 3577777666654
No 93
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=45.31 E-value=57 Score=27.92 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=32.8
Q ss_pred ccCCcEEEEEee----------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCcee
Q 014856 101 SLKDQEVLIRGR----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ 164 (417)
Q Consensus 101 ~~~G~~V~vrgr----------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~ 164 (417)
...|+.|+|-|+ ++..|+|.++.. .+ -..+.+|.|.|+|...
T Consensus 40 ~fvGk~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~p---L~---------~~~~~~VEViG~V~~~---------- 97 (142)
T 2pi2_E 40 QFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEP---LD---------EEISGIVEVVGRVTAK---------- 97 (142)
T ss_dssp GSTTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSC---CS---------SCCCSEEEEEEEECTT----------
T ss_pred hhCCCEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCC---CC---------ccCCCEEEEEEEECCC----------
Confidence 577888888877 444555554321 01 1346799999999531
Q ss_pred EEEEEeEEEEeec
Q 014856 165 VEVQIKKLYCVSR 177 (417)
Q Consensus 165 ~El~~~~i~vls~ 177 (417)
.+|.+..+.-++.
T Consensus 98 ~tI~~~~~~~fGd 110 (142)
T 2pi2_E 98 ATILCTSYVQFKE 110 (142)
T ss_dssp SCEEEEEEEECCC
T ss_pred CcEEEEEEEecCC
Confidence 3466666554443
No 94
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=42.96 E-value=31 Score=28.35 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=27.2
Q ss_pred ccCCcEEEEEee--------------cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEec
Q 014856 101 SLKDQEVLIRGR--------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 153 (417)
Q Consensus 101 ~~~G~~V~vrgr--------------~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 153 (417)
.+.|+.|+|-|+ +++.|.|.++.. ..+..+.+|.|.|+|..
T Consensus 15 ~~~g~~VrivGkV~~~~g~~~~l~s~d~~~Vtv~l~~~------------~~~~~~~~vEViG~V~~ 69 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTGNTLLMQTSDLGNVEIAMTPD------------SDVSSSTFVEVTGKVSD 69 (114)
T ss_dssp GGTTSEEEEEEEEEEEETTEEEEECTTSCEEEEECCSS------------CCGGGCSEEEEEEEECT
T ss_pred hhCCCeEEEEEEEeeeCCCEEEEEeCCCCEEEEEeCCC------------CCcccCcEEEEEEEEcC
Confidence 467888888877 445555555431 12346789999999964
No 95
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=41.81 E-value=70 Score=29.01 Aligned_cols=59 Identities=7% Similarity=0.112 Sum_probs=39.3
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEE-EEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G-~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.| .|++++.. +..-+|...|..|+++.|.+ .|.......+...+.+||....-..+.+|
T Consensus 54 ~G-~I~at~~~------~~~~~~~~~l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 54 SG-EIRATAFN------EQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp SC-EEEEEEEH------HHHHHHGGGCCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred CC-eEEEEECh------HHHHHhhhhcccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEc
Confidence 44 88988873 23345677899999999997 44433333333446799998765555555
No 96
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=41.46 E-value=40 Score=27.73 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=29.6
Q ss_pred HHHcCCCCcEEEEEEEEecCCcc-C--CCCc-eeEEEEEe----EEEEeec
Q 014856 135 FVRSLSNESIVDVIGVVSVPDVE-I--KGAT-QQVEVQIK----KLYCVSR 177 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~~-~--~~~t-~~~El~~~----~i~vls~ 177 (417)
..+.|.+|+.|.|+|.+....-. . .|.+ ..+||.++ +|.+|+.
T Consensus 69 ~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 69 IDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp HHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred HHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 34569999999999998753211 2 2444 34899997 8988865
No 97
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=41.25 E-value=54 Score=27.84 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=36.6
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCcc-CCCCce-eEEE---EEeEEEEeecC
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGATQ-QVEV---QIKKLYCVSRA 178 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-~~~~t~-~~El---~~~~i~vls~~ 178 (417)
...+.|++-. +......+.|.+||.|.|+|.+....-. ..+.+. .+|| .+.+|.+|...
T Consensus 52 t~~~~v~~wg------~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 52 TEWHRVVLFG------KLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp CEEEEEEEET------HHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred cEEEEEEEeh------HHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 3457777762 1112234569999999999998753211 223332 3788 78888887643
No 98
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=40.75 E-value=1e+02 Score=25.44 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=33.2
Q ss_pred cCc-eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 113 RVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 113 ~~~-~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
++| .|.|..-...+..+ .-...+..|+.|.|.|.+..- .|...|.+..|..+..
T Consensus 57 ~TG~~I~~~~W~~~~~~~----~~~~~~~~g~yVrV~G~l~~f-------~g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 57 MTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSF-------QNKKSLVAFKIMPLED 111 (132)
T ss_dssp SSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEEE-------TTEEEEEEEEEEECSS
T ss_pred CCCCEEEEEEEccCCCcc----cccccccCCCEEEEEEEEEeE-------CCEEEEEEEEEEEcCC
Confidence 455 67777653221110 124579999999999998642 2457788888887654
No 99
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=38.65 E-value=73 Score=29.65 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=34.7
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCce-eEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQ-QVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~-~~El~~~~i~vls~~ 178 (417)
.+.|++-. +......+.|.+|+.|.|+|.+....-...|.+. .+||.+++|.+|...
T Consensus 53 ~~~v~~~g------~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 53 YHRVRLLG------RQAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEET------HHHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEEc------hHHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 46676652 2212234569999999999999753211123332 389999999998754
No 100
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=36.95 E-value=1.5e+02 Score=24.01 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=31.8
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCcc-CCCCc-eeEEEEEeEEE
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLY 173 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-~~~~t-~~~El~~~~i~ 173 (417)
...+.|++-.+ ......+.|.+||.|.|+|.+....-. ..|.+ ...||.+++|+
T Consensus 52 t~fi~vv~wgk------~AE~~~~yl~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 52 PARLKVVGWGA------VAQELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp CEEEEEEEETH------HHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEE
T ss_pred cEEEEEEEEhH------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEE
Confidence 44577777631 111234569999999999998753211 12322 34889888875
No 101
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=36.52 E-value=1.1e+02 Score=27.52 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=33.1
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCcc-CCCCc-eeEEEEEeEEEE
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYC 174 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-~~~~t-~~~El~~~~i~v 174 (417)
+..+.|++-. +......+.|.+|+.|.|+|.+....-. ..+.+ ..+||.+++|..
T Consensus 52 T~wi~Vvawg------klAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 52 SLFLTCSVWR------QAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp CEEEEEEEET------HHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred cEEEEEEEEh------HHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 3446777762 2122234569999999999999853211 12323 348999998875
No 102
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=36.43 E-value=93 Score=29.78 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=36.2
Q ss_pred eEEEEEeeCCCCccHHHHHHHHc-CCCCcEEEEEEEEecCCc-cCCCCce-eEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRS-LSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~-l~~es~V~V~G~v~~~~~-~~~~~t~-~~El~~~~i~vls~~ 178 (417)
.+.|++.. +......+. |.+|+.|.|+|.+....- ...|.+. .+||.+++|.+|...
T Consensus 53 ~i~vv~~g------~~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 53 YHRVSILG------KPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEES------HHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEEc------HHHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 46777762 222234566 899999999999875221 1123332 389999999998753
No 103
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=35.95 E-value=1.1e+02 Score=26.59 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=32.2
Q ss_pred CceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCcc-CCCCc-eeEEEEEeEE
Q 014856 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKL 172 (417)
Q Consensus 114 ~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~-~~~~t-~~~El~~~~i 172 (417)
...+.|++-. +......+.|.+|+.|.|+|.+....-. ..+.+ ..+||.+++|
T Consensus 52 t~~~~v~~wg------~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 52 ALFLRCNIWR------EAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp CEEEEEEEEH------HHHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred cEEEEEEEeh------HHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 3357777763 1222345679999999999998753211 12333 2378877755
No 104
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi}
Probab=35.35 E-value=13 Score=30.93 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=20.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHH
Q 014856 19 QSISKKAAKKEAAKKAKEERRKEA 42 (417)
Q Consensus 19 ~~~sk~~lkk~~k~~~k~~kka~~ 42 (417)
+++||++|||..|..+...+|+++
T Consensus 54 ~~~skSaLKKa~K~~~~~~kK~~k 77 (113)
T 2kqr_A 54 EAASKTALKKSWKRYEQEMLKNEK 77 (113)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTCT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999888653
No 105
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=34.73 E-value=1.4e+02 Score=23.93 Aligned_cols=46 Identities=11% Similarity=0.307 Sum_probs=30.0
Q ss_pred EEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEE
Q 014856 117 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 173 (417)
Q Consensus 117 iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~ 173 (417)
|+||+-- ...+.+..+.+|+.|.|+|.+...... ...+=++++.+.
T Consensus 50 i~vv~wG-------k~AE~~~~~~kGs~V~VeGrL~trs~~----s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAG-------KMASVLDRIAPGTVLECVGFLARKHRS----SKALVFHISGLE 95 (101)
T ss_dssp EEEEEET-------HHHHHHTTSCTTCEEEEEEEEEECC--------CEEEEEEEEE
T ss_pred EEEEEEh-------HHHHHHhhcCCCCEEEEEEEEEeCcCC----CCeeEEEEeccc
Confidence 7888762 233455679999999999999753211 134667777664
No 106
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=34.71 E-value=60 Score=32.52 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=39.0
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEE-EEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G-~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
..+.|++++.. ...-+|...|..|+++.|.+ .|.......+...+.+||....-..+.+|
T Consensus 48 e~G~I~at~~~------~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 48 DSGEIKATGFN------DAVDRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp SSCEEEEEEET------HHHHHHTTTCCTTCEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred CCCEEEEEEeH------HHHHHHHHheecCCEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 44489998873 23445777899999999997 44444333334446799998754444444
No 107
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=33.55 E-value=87 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeec
Q 014856 135 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSR 177 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~~i~vls~ 177 (417)
.+..|.+|+.|.|+|.+....- ...|.+ ..+||.+++|.+|..
T Consensus 189 ~~~~l~KG~~V~V~GrL~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 189 NMKELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp HHTTCCTTCEEEEEEEEEEEECC------CEEEEEEEEEEEECCC
T ss_pred HHHhcCCCCEEEEEEEEeeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 3333999999999999875321 112333 248999999999864
No 108
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=33.13 E-value=93 Score=28.92 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=29.9
Q ss_pred HcCCCCcEEEEEEEEecCCc-cCCCCce-eEEEEEeEEEEeecC
Q 014856 137 RSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 178 (417)
Q Consensus 137 ~~l~~es~V~V~G~v~~~~~-~~~~~t~-~~El~~~~i~vls~~ 178 (417)
..|.+|+.|.|+|.+....- ...|.+. .+||.++.|.+|...
T Consensus 187 ~~l~KG~~V~V~G~l~~~~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 187 SELRKGDGLLVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp TTCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred hhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEECccc
Confidence 38999999999999875321 1223332 389999999998653
No 109
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=33.03 E-value=40 Score=27.83 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeecc-CCCceeeccCHHHHHH
Q 014856 232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQ 289 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~Spql~lq 289 (417)
.|--+++++.+|+.++|+ ||-|.-.+.-.|..+- ..| .+-..-|-+||+-...
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIvLNIsp~Av~~ 61 (111)
T 1ou8_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVP-VEYVKDGQIVLNLSASATGN 61 (111)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBCC-GGGCBTTEEEEECSTTTCEE
T ss_pred CccHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCC-HHHhcCCEEEEECChhhhcC
Confidence 477899999999999999 9999876553444421 112 3567778888865544
No 110
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=32.66 E-value=43 Score=27.89 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=37.5
Q ss_pred HHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeecc-CCCceeeccCHHHHHH
Q 014856 232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQ 289 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~Spql~lq 289 (417)
.|--+++++.+|+.++|| ||-|.-.+.-.|..+- ..| .+...-|-+||+-...
T Consensus 9 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIVLNIsp~Av~~ 62 (118)
T 1yfn_A 9 RRPYLLRAFYEWLLDNQL----TPHLVVDVTLPGVQVP-MEYARDGQIVLNIAPRAVGN 62 (118)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSC-GGGCBTTEEEEECSGGGCEE
T ss_pred CccHHHHHHHHHHHcCCC----cceEEEEcCCCCccCC-HHHhcCCEEEEECChhhhcC
Confidence 477899999999999999 9999876553444421 122 3567788888876554
No 111
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=32.49 E-value=1.3e+02 Score=26.33 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEE----eEEEEeecC
Q 014856 135 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQI----KKLYCVSRA 178 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~----~~i~vls~~ 178 (417)
..+.|.+|+.|.|+|.+....- ...|.+ ..+||.+ .+|.+|+..
T Consensus 86 ~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 86 ALQYLHKGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp HHHHCCTTCEEEEEEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred HHHhCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 3456999999999999875321 122333 2488887 589988654
No 112
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=32.18 E-value=1.3e+02 Score=24.87 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=33.2
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 177 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~ 177 (417)
+++.|.|..-...+..+ ..-...+..|++|.|.|.+..- .|...|.+..|..+..
T Consensus 62 ~TG~I~~~~W~~~~~~~---~~~~~~~~~g~yVrV~G~v~~f-------~g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 62 GTGQIEVRQWLDSSSDD---SSKASEIRNNVYVRVLGTLKSF-------QNRRSISSGHMRPVID 116 (136)
T ss_dssp SSCEEEEEEECC-----------CCSCCTTCEEEEEEEEEEE-------TTEEEEEESEEEECSS
T ss_pred CCCCEEEEEecccCCcc---cccccccCCCCEEEEEEEEEEe-------CCEEEEEEEEEEECCC
Confidence 45567776643211100 0123569999999999998642 2457788888877653
No 113
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=29.97 E-value=1.1e+02 Score=25.39 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=26.8
Q ss_pred HHHcCCCCcEEEEEEEEecCCccCCCCc-eeEEEEEeEEEE
Q 014856 135 FVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYC 174 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~~~~~~t-~~~El~~~~i~v 174 (417)
..+.|.+|+.|.|+|.+....-...|.+ ..+||.++.|-.
T Consensus 77 ~~~~l~KG~~V~VeGrL~~~~~dkdG~~r~~~ev~a~~vg~ 117 (128)
T 4dam_A 77 ASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGH 117 (128)
T ss_dssp HHHHCCTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred HHHhcCCCCEEEEEEEEEEeEEcCCCCEEEEEEEEEEEEEe
Confidence 3467999999999999875322222333 237888887753
No 114
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=29.28 E-value=57 Score=26.06 Aligned_cols=54 Identities=6% Similarity=0.052 Sum_probs=33.8
Q ss_pred cCceEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 113 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 113 ~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
+++.|.+.+-... .. ....+..|++|.|.|.+.... -.|.++|.+.+...+.++
T Consensus 52 ~TG~I~~t~w~~~----~~---~~~~l~~G~vv~i~g~~v~~~-----f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 52 DTGELRAVFWTEN----IK---LLKKFREGDVIRIKDVNIRGG-----FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp TTEEEEEEEETTG----GG---GGGTCCTTSEEEEEEEEECCC-----SSSSCEEEECTTCCEEEE
T ss_pred CCCeEEEEEeCch----hh---hhhcCCCCCEEEEEeeEEccc-----cCCeEEEEECCCceEEEC
Confidence 5567777776321 11 125799999999999875321 124578887765555544
No 115
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=29.18 E-value=48 Score=28.04 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeecc-CCCceeeccCHHHHHH
Q 014856 232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQ 289 (417)
Q Consensus 232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~Spql~lq 289 (417)
.|.-+++++.+|+.++|| ||-|.-.+.-.|..+= ..| .+-..-|-+||+-...
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~L~Vda~~~~v~VP-~~~v~dGqIVLNIsp~Av~~ 61 (129)
T 1ou9_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVP-VEYVKDGQIVLNLSASATGN 61 (129)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSC-GGGCBTTEEEEECCTTTCEE
T ss_pred CchHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCC-HHHhcCCEEEEECChhhhcC
Confidence 477899999999999999 9999876553444421 122 3567778888875554
No 116
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=27.40 E-value=92 Score=26.30 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=35.5
Q ss_pred eEEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 116 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 116 ~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
.++||+-.+. -+ ...+.|.+|+-|.|+|.+.... ...|. ..+.+++++|+.|+.-
T Consensus 66 ~i~vv~wGk~---AE---~~~~yl~KGs~V~VeGrL~tr~-~k~G~-kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 66 QMPVIVSGHE---NQ---AITHSITVGSRITVQGFISCHK-AKNGL-SKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEEESTG---GG---GGGTTCCTTCEEEEEEEEEEEC-TTTTS-CEEEEEEEEEEETTSC
T ss_pred EEEEEEEhHH---HH---HHHHhcCCCCEEEEEEEEEEEE-CCCCC-EEEEEEEEEEEECcCC
Confidence 3788887421 11 1234599999999999998532 11121 2367799999998643
No 117
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=25.28 E-value=1.4e+02 Score=23.86 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=25.4
Q ss_pred HcCCCCcEEEEE-EEEecCCccCCCCceeEEEEEeEEEEeecC
Q 014856 137 RSLSNESIVDVI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178 (417)
Q Consensus 137 ~~l~~es~V~V~-G~v~~~~~~~~~~t~~~El~~~~i~vls~~ 178 (417)
..+..|++|.|. |.+..- .|.++|.+.++..+.+.
T Consensus 59 ~~~~~G~~V~i~n~~v~~~-------~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 59 PLLEQGESYLLRSVVVGEY-------NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp CCCCTTCEEEEEEEEEEEE-------TTEEEEEECSSSEEEEC
T ss_pred cccCCCCEEEEEEEEEEEE-------CCEEEEEECCceEEEEC
Confidence 368999999999 666431 25689999877666554
No 118
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=23.92 E-value=43 Score=29.62 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHcCCCCcEEEEEEEEecCCcc-CCCCce-eEEE---EEeEEEEeec
Q 014856 135 FVRSLSNESIVDVIGVVSVPDVE-IKGATQ-QVEV---QIKKLYCVSR 177 (417)
Q Consensus 135 ~~~~l~~es~V~V~G~v~~~~~~-~~~~t~-~~El---~~~~i~vls~ 177 (417)
..+.|.+|+.|.|+|.+....-. ..+.+. .+|| .+.+|.+|..
T Consensus 68 ~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~ 115 (178)
T 1eqq_A 68 ASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 115 (178)
T ss_dssp HHHHCCTTCEEEECCEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC
T ss_pred HHHhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEeeeecCeEEEccc
Confidence 34569999999999998753211 123222 2677 6667766653
No 119
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=20.41 E-value=1.3e+02 Score=27.12 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHcCCCCcEEEEEEEEecCCc-cCCCCc-eeEEEEEe----EEEEeecC
Q 014856 136 VRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIK----KLYCVSRA 178 (417)
Q Consensus 136 ~~~l~~es~V~V~G~v~~~~~-~~~~~t-~~~El~~~----~i~vls~~ 178 (417)
.+.|.+|+.|.|+|.+....- ...+.+ -.+||.++ +|.+|..-
T Consensus 90 ~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 90 EQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp HHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred HhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 356999999999999875321 122433 34899998 68888653
Done!