RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014856
(417 letters)
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 390 bits (1005), Expect = e-133
Identities = 169/381 (44%), Positives = 227/381 (59%), Gaps = 39/381 (10%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALN-GSLKDQEVLIRGR------- 112
+NYG +PL + + + G++ + L+ D+EVL R R
Sbjct: 2 KDNYGKLPLIQSRDSDRT----------GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQ 51
Query: 113 -----------RVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 160
+ S +Q L ++SK MV++ SL+ ESIV V G+V D IK
Sbjct: 52 GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS 111
Query: 161 ATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 218
AT Q +E+ I K+Y +S + PI +EDASRSEAE E A P VN DTRL+ RV
Sbjct: 112 ATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGL-----PVVNLDTRLDYRV 166
Query: 219 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSA 278
ID+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A
Sbjct: 167 IDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKA 226
Query: 279 CLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMD 338
LAQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D
Sbjct: 227 YLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLD 286
Query: 339 IVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDAGVEI 396
+ LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 287 TLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEI 346
Query: 397 DPLGDLNTESERKLGQLVLEK 417
DL+TE+E+ LG+LV +K
Sbjct: 347 GDFEDLSTENEKFLGKLVRDK 367
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 382 bits (982), Expect = e-129
Identities = 161/443 (36%), Positives = 231/443 (52%), Gaps = 73/443 (16%)
Query: 32 KKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGRE 91
A + +K E N+ +P+ + Q +G +
Sbjct: 4 SMAATQEKKPQLPPVVLLK----TPELVSGENFKVMPMHQSQP----------CYKTGLK 49
Query: 92 WTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVR 134
+TE+ L ++ ++ V IR R + T Q L +K +++SKE V+
Sbjct: 50 YTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALV-MKSETISKEFVQ 108
Query: 135 FVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSE 192
F + +S ESI D+ G+V + I+ ATQQ VE+ + + VS A P+ IED +
Sbjct: 109 FCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPS 168
Query: 193 AEIEKAS--------------------------------------KEGVQLPRVNQDTRL 214
+ +K + +V+QDTRL
Sbjct: 169 SVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRL 228
Query: 215 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK 274
+NR++D+RT+ N IFRIQS +FR+FL S+ FVEIHTPKLI SSEGGS +F + Y
Sbjct: 229 DNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYF 288
Query: 275 GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS 334
+ A LAQSPQL+KQM+I GDF +VFE GPVFRAE+S T RHL EF GLD+EMEI ++Y
Sbjct: 289 DRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYH 348
Query: 335 EVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 394
E +D+++ LF IFD + EL+ + KQYPFE L Y+P LRLT++E ++ML+ +G
Sbjct: 349 ECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP-FLRLTYKEAIEMLRASGE 407
Query: 395 EIDPLGDLNTESERKLGQLVLEK 417
I D T E KLG+L+ K
Sbjct: 408 TIGDYDDFTTPQEVKLGELIKAK 430
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 364 bits (936), Expect = e-123
Identities = 100/346 (28%), Positives = 157/346 (45%), Gaps = 45/346 (13%)
Query: 90 REWTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEM 132
+ L Q+V + G R VQ T V E+
Sbjct: 2 YRTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI--TAPKKKVDPEL 59
Query: 133 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRS 191
+ + L +E +V V GVV A E+ +K+ ++RA P+ +
Sbjct: 60 FKLIPKLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVK- 114
Query: 192 EAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVE 251
DTRL+NR +D+R IF+I+S V R F F+E
Sbjct: 115 ----------------AELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIE 158
Query: 252 IHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 311
IHTPK+IA ++EGG+ +F + Y + A LAQSPQL+KQ+ + RV+E P+FRAE+
Sbjct: 159 IHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEH 218
Query: 312 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPL 371
T RHL E +D EM + EVM ++ L + + KEL+ + + L
Sbjct: 219 NTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL 278
Query: 372 KYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417
+ R+++++ +++L D G EI D++TE ER LG+ ++E
Sbjct: 279 PFP----RVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMEN 320
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 326 bits (837), Expect = e-108
Identities = 93/341 (27%), Positives = 158/341 (46%), Gaps = 50/341 (14%)
Query: 90 REWTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEM 132
+ + +EV+ G + Q + +
Sbjct: 2 YRSHFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVV-----DKNSSA 56
Query: 133 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRS 191
+ L+ ES++ V G+V K A + +E+ +++ +S+A P+ + ++
Sbjct: 57 FGISQELTQESVIQVRGIV----KADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKA 112
Query: 192 EAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVE 251
+ DTRL RV+D+R Q + +IQS FR+ L E F+E
Sbjct: 113 -----------------DIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIE 155
Query: 252 IHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 311
I TPK+IA ++EGG+ +F + Y G+ A LAQSPQL+K++ + G RVFE P +RAE+S
Sbjct: 156 IFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEES 214
Query: 312 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPL 371
T HL EF +DVEM Y++VM +++ + I ++ K+EL+ + + P +
Sbjct: 215 DTPFHLAEFISMDVEMAF-ADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKI 273
Query: 372 KYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 412
K RL + E +++L+ G I D+ T R L +
Sbjct: 274 PIK----RLKYTEAIEILRSKGYNIKFGDDIGTPELRILNE 310
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 317 bits (814), Expect = e-105
Identities = 95/332 (28%), Positives = 148/332 (44%), Gaps = 56/332 (16%)
Query: 104 DQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 146
QEV + G R VQ + + ES +
Sbjct: 13 GQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGL------------KLPLPESALR 60
Query: 147 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQL 205
V G+V VE A +EVQ K++ +S A + P+ I
Sbjct: 61 VRGLV----VENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEW--------------- 101
Query: 206 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGG 265
R N DT L R + +R + ++Q+ + FR++L ++F EI TPK++ +EGG
Sbjct: 102 -RANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGG 160
Query: 266 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 325
S +F +DY + A LAQSPQL+KQ+ + F RV+E PV+R E+ +T RHL E+ LDV
Sbjct: 161 SGLFGVDYFEKRAYLAQSPQLYKQIMVGV-FERVYEVAPVWRMEEHHTSRHLNEYLSLDV 219
Query: 326 EMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 385
EM ++M + + L + + N E+ + +P P RLT E
Sbjct: 220 EMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIP----RLTHAEA 275
Query: 386 VQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417
++LK+ + DL+ E+ER LG+ E+
Sbjct: 276 KRILKE-ELGYPVGQDLSEEAERLLGEYAKER 306
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 204 bits (522), Expect = 1e-61
Identities = 82/340 (24%), Positives = 144/340 (42%), Gaps = 46/340 (13%)
Query: 91 EWTEVGALNGSLKDQEVLIRG----RRVS-------------TVQCLATVKPDSVSKEMV 133
E + L ++V + G VQ V + V +E
Sbjct: 3 EKVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQA--VVAKNVVGEETF 60
Query: 134 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEA 193
+ L ES V V G+V + A EV ++KL + ++ PI
Sbjct: 61 EKAKKLGRESSVIVEGIV----KADERAPGGAEVHVEKLEVIQAVSEFPIPE-------- 108
Query: 194 EIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIH 253
+ + + L+ R + IRT I +++ + R++LL + + E+
Sbjct: 109 ----------NPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVF 158
Query: 254 TPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 313
P L+ G+ EGG+ +F+L Y + A L+QS QL+ + +I G +V+ P FRAE S T
Sbjct: 159 PPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSRT 217
Query: 314 HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYP-FEPLK 372
RHL EF L++E ++M + + L + + KKE+E +
Sbjct: 218 RRHLTEFWHLELEAAW-MDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNT- 275
Query: 373 YKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 412
+P R++++E + +L+ GV ++ DL + ER L +
Sbjct: 276 -EPPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLTE 314
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 175 bits (446), Expect = 1e-50
Identities = 72/341 (21%), Positives = 128/341 (37%), Gaps = 65/341 (19%)
Query: 103 KDQEVLIRG----RRVS--------------TVQCLATVKPDSVSKEMVRFVRSLSNESI 144
+++ V I+G R +Q + +++ E
Sbjct: 10 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQV--LLMDKLCQTYDAL---TVNTECT 64
Query: 145 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 204
V++ G + E K A E+ + A I V
Sbjct: 65 VEIYGAI-KEVPEGKEAPNGHELIADFWKIIGNAPPGGIDN-----------------VL 106
Query: 205 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 264
+ D L+NR + IR + R+++ R+ + +VE+ P L+ EG
Sbjct: 107 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEG 166
Query: 265 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 324
GS +F LDY G+ + L QS QL+ + I G VF +RAE S T RHL E+ ++
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCIPT-LGDVFCIAQSYRAEKSRTRRHLAEYAHVE 225
Query: 325 VEMEIKKHYSEVMDIVDCLFVTIFDSL--NNVCKKELEAVAKQY-----PFEPLKYKPKT 377
E ++M+ ++ L D L + KK LE + ++ PF
Sbjct: 226 AECPFITL-DDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFL-------- 276
Query: 378 LRLTFEEGVQMLKDAGVEIDPLG------DLNTESERKLGQ 412
R+ +++ ++ L++ VE + D+ +ER +
Sbjct: 277 -RMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTD 316
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 174 bits (444), Expect = 3e-50
Identities = 69/344 (20%), Positives = 139/344 (40%), Gaps = 63/344 (18%)
Query: 100 GSLKDQEVLIRG----RRVS--------------TVQCLATVKPDSVSKEMVRFVRSLSN 141
L+ + V +G R + QC + + + V+ L+
Sbjct: 26 AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQC--VIFGKELCEP--EKVKLLTR 81
Query: 142 ESIVDVIG-VVSVPD---VEIKGATQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEI 195
E +++ G + + +E+Q+ + + + I +D+S
Sbjct: 82 ECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSI----- 136
Query: 196 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 255
++ NR I IR+ Q + +++S++ FR++ +F EI P
Sbjct: 137 ---------------PQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPP 181
Query: 256 KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 315
++ EGGS +F+L Y + A L QS QL+ + I G+ F +RAE S T R
Sbjct: 182 TIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIAS-LGKSFCMLSSYRAEQSRTVR 240
Query: 316 HLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKP 375
HL E+ L+ E+ + ++++ ++ L T+ D++ V ++ P P
Sbjct: 241 HLAEYLHLEAELPF-ISFEDLLNHLEDLVCTVIDNVMAVHGDKIRK------MNPHLKLP 293
Query: 376 KT--LRLTFEEGVQMLKDAGV--EIDPLG---DLNTESERKLGQ 412
R+T+ + ++ D G+ + P D++ + ER++
Sbjct: 294 TRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTD 337
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 155 bits (393), Expect = 3e-44
Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 31/202 (15%)
Query: 217 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVF 269
++I + IQ+++ F + E F + L + G
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 270 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEM 327
++ G L S LHKQ++I ++F P R E RH EFT LD E+
Sbjct: 62 EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEV 121
Query: 328 EIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 387
E + ++M +++ L +F +E FE + E ++
Sbjct: 122 E-RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK---RFE---------VFEYSEVLE 168
Query: 388 MLKDAGVEIDPLGDLNTESERK 409
D E +
Sbjct: 169 EFGS---------DEKASQEME 181
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 100 bits (252), Expect = 4e-23
Identities = 73/269 (27%), Positives = 111/269 (41%), Gaps = 53/269 (19%)
Query: 129 SKEMVRFVRSLSNESIVDVIGVVSV-PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIED 187
+ + E +V G+V + P+ + AT +VEV++ L ++ A P ++
Sbjct: 53 ASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDA 112
Query: 188 ASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSE 247
R E E E +++ RL R +D+R Q R++ +V FL E
Sbjct: 113 GWRGEEEKE-----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDRE 161
Query: 248 NFVEIHTPKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVF 300
FV++ TP L + EG R D+ G L QSPQL KQM + R F
Sbjct: 162 GFVQVETPFLTKSTPEGA----R-DFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYF 216
Query: 301 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDCLFVTIFDSLNNVC 355
+ FR ED R +FT LD+EM S +V+++ + L +F V
Sbjct: 217 QIARCFRDEDLRADRQP-DFTQLDLEM------SFVEVEDVLELNERLMAHVFREALGV- 268
Query: 356 KKELEAVAKQYPFEPLKYKPKTLRLTFEE 384
EL PF RL++EE
Sbjct: 269 --ELPL-----PFP---------RLSYEE 281
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 87.2 bits (217), Expect = 9e-19
Identities = 64/271 (23%), Positives = 106/271 (39%), Gaps = 64/271 (23%)
Query: 129 SKEMVRFVRSLSNESIVDVIGVVSV-PDVEI--KGATQQVEVQIKKLYCVSRAAKTPITI 185
+ ++ L NE + V G V + I AT ++EV L ++RA P+
Sbjct: 53 RADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDS 112
Query: 186 EDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLL 245
++ RL R +D+R + ++++ ++ R+F+
Sbjct: 113 NH-------------------VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMD 153
Query: 246 SENFVEIHTPKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGR 298
F++I TP L + EG R DY KG+ L QSPQL KQ+ + F R
Sbjct: 154 DHGFLDIETPMLTKATPEGA----R-DYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDR 208
Query: 299 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDCLFVTIFDSLNN 353
++ FR ED R EFT +DVE S +V ++++ L ++ +
Sbjct: 209 YYQIVKCFRDEDLRADRQP-EFTQIDVET------SFMTAPQVREVMEALVRHLWLEVKG 261
Query: 354 VCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 384
V +L F +TF E
Sbjct: 262 V---DLG------DFP---------VMTFAE 274
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 56.0 bits (136), Expect = 7e-09
Identities = 34/209 (16%), Positives = 59/209 (28%), Gaps = 50/209 (23%)
Query: 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKL---IAGSSEGGSAV-FRLDYKGQSACLAQ-- 282
++ + R+F +E+ TP + V F + G
Sbjct: 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVT---DIHLVPFETRFVGPGHSQGMNL 91
Query: 283 ----SPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KKHYSE 335
SP+ H + + G VF+ FR E+ H EFT +E
Sbjct: 92 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGR-YHNPEFT----MLEWYRPHYDMYR 146
Query: 336 VMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT--------FEEGVQ 387
+M+ VD L + V E L Y+ LR + +
Sbjct: 147 LMNEVDDLL---------------QQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLRE 191
Query: 388 MLKDAGVEIDPLGDLNTESERKLGQLVLE 416
+ + ++E L+
Sbjct: 192 VAAKLDLSNVA------DTEEDRDTLLQL 214
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 1e-08
Identities = 48/333 (14%), Positives = 95/333 (28%), Gaps = 101/333 (30%)
Query: 135 FVRSLSNESIVDVI-GVVSVPDV-EIKGATQQVEVQIKKLYCVSRAAKTPIT---IEDAS 189
FV + + + D+ ++S ++ I + V +L+ + + + +E+
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 190 RSEAE--IEKASKEGVQLPRVNQDT------RLNNRVIDIRTLANQGIFRIQSQVGNIFR 241
R + + E Q P + RL N D + A + R+Q + R
Sbjct: 88 RINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQ-PYLKL-R 141
Query: 242 QFLL---SENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA----QSPQLHKQMSICG 294
Q LL V I G GS G++ +A S ++ +M
Sbjct: 142 QALLELRPAKNVLID------GV--LGS--------GKT-WVALDVCLSYKVQCKMD-FK 183
Query: 295 ----DFGRVFETGPVF----------------RAEDSYTHRHLCEFTGLDVEMEIK---- 330
+ V R++ S + ++ E++
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH----SIQAELRRLLK 239
Query: 331 -KHYSEVMDIVD--------------C--LFVT----IFDSLNNVCKKELEAVAKQYPFE 369
K Y + ++ C L T + D L+ +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 370 PLKYKPKTLRL---TFEEGVQMLKDAGVEIDPL 399
P + L + Q L + +P
Sbjct: 300 P----DEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Score = 43.3 bits (101), Expect = 2e-04
Identities = 41/350 (11%), Positives = 102/350 (29%), Gaps = 92/350 (26%)
Query: 14 VDSSSQSISKKAAKKEAAKKAKEERRK---EAEAAASAASALSIEEEGPLANNYGDVPLQ 70
+ + + ++ + + + E + L + D+P +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--------DLP-R 320
Query: 71 ELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSK 130
E+ + N P+ +S + ++D ++T V D ++
Sbjct: 321 EVLTTN-PR------RLSI-----IAES---IRD--------GLATWDNWKHVNCDKLTT 357
Query: 131 EMVRFVRSLSNESIVDVIGVVSV--PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDA 188
+ + L + +SV P I + + ++ + + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHI---PTIL---LSLIWFDV-IKSDVMVVVNK 410
Query: 189 SRSEAEIEKASKE------GVQL---PRVNQDTRLNNRVID----IRTLANQGIFRI--- 232
+ +EK KE + L ++ + L+ ++D +T + +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 233 ---------------QSQVGNIFRQFLLSENFVE---IHTPKLIAGSSEGGSAVFRLD-Y 273
+ +FR L F+E H S + + +L Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 274 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 323
K P+ + ++ DF + + E + ++T L
Sbjct: 531 KPY--ICDNDPKYERLVNAILDF--------LPKIE---ENLICSKYTDL 567
Score = 37.9 bits (87), Expect = 0.006
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 19/97 (19%)
Query: 312 YTHRHLCEFTGLDVEM-EIKKHYSEVM-----DIV---DCLFVTIFDSLNNV-CKKELEA 361
+ H H+ D E E + Y +++ V DC V D ++ K+E++
Sbjct: 2 HHHHHM------DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDH 53
Query: 362 VAKQ-YPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID 397
+ TL EE VQ + + I+
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 54.5 bits (132), Expect = 4e-08
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 38/207 (18%)
Query: 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 275
F I+S++ R FL F+EI TP + I G G A + LD Y
Sbjct: 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIPG---GAVA--KPFITYHNELDMNLY-- 227
Query: 276 QSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE--DSYTHRHLCEFTGLDVEMEI---K 330
+ +P+L+ +M + G RV+E G FR E D H EFT E
Sbjct: 228 ----MRIAPELYHKMLVVGGIDRVYEIGRQFRNEGID---LTHNPEFT----TCEFYMAY 276
Query: 331 KHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 390
Y ++M+I + + + + K + + + P R+ E ++ K
Sbjct: 277 ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELE--K 334
Query: 391 DAGVEIDPLGDLNTESERKLGQLVLEK 417
G+++ TE RK+ +
Sbjct: 335 ALGMKLPETNLFETEETRKILDDICVA 361
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 5e-08
Identities = 69/466 (14%), Positives = 136/466 (29%), Gaps = 159/466 (34%)
Query: 4 ESEPPKVQEEVDSSSQSISKKAAKKEAAKKA------------KEERRKEAEAAASAASA 51
++ V + + S++++S+ A+K + + S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-- 235
Query: 52 LSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRG 111
+S PL + +Q + T K + G +T G L L +
Sbjct: 236 ISC----PL--------IGVIQLAHYVVTAK----LLG--FT-PGELRSYL--KGATGHS 274
Query: 112 RRVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVS---VPDVEIKGATQQVEV 167
+ + T +A +S + + + L IGV P+ + + + +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLF------FIGVRCYEAYPNTSLPPSILEDSL 328
Query: 168 QIKKLYCVSRAAKTP-ITIEDASRSEAE--IEKASKEG-----VQLPRVNQDTRLNNRVI 219
+ + +P ++I + ++ + + + K + V++ VN N V+
Sbjct: 329 E------NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GA-KNLVV 379
Query: 220 -----DIRTLANQGIFR--------IQSQVGNIF--RQFLLSENFVEI----HTPKLIAG 260
+ L R QS++ F R+ S F+ + H+ L
Sbjct: 380 SGPPQSLYGLNLT--LRKAKAPSGLDQSRIP--FSERKLKFSNRFLPVASPFHSHLL--- 432
Query: 261 SSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEF 320
S + D + + I PV+ D++ L
Sbjct: 433 --VPASDLINKDLVKNNVSFNAK-----DIQI-----------PVY---DTFDGSDLRVL 471
Query: 321 TGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLR- 379
+G E IVDC+ P+K+ T +
Sbjct: 472 SGSISE-----------RIVDCIIR-----------------------LPVKW-ETTTQF 496
Query: 380 -----LTFEEG--------VQMLKDA-GVEIDPLGDLNTESERKLG 411
L F G KD GV + G L+ + G
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 37.7 bits (87), Expect = 0.008
Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 64/243 (26%)
Query: 136 VRS--LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEA 193
R LS+ S+ V+ VP A+Q E K L + +D + A
Sbjct: 6 TRPLTLSHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEG----FAADDEPTTPA 58
Query: 194 EI----------EKASKEGVQLPRV-----NQDTR--LNNRVIDIRTLA---NQGIFRIQ 233
E+ + Q +V + L DI LA Q
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--DIHALAAKLLQENDTTL 116
Query: 234 SQVGNIFRQF-----LLSENFVEIHTPKLIAGSSEGGS---AVFRLDYKGQ---SACLAQ 282
+ + + + + F + L EG + A+F GQ
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF----GGQGNTDDYF-- 170
Query: 283 SPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 340
+L +++T V D ++ L E + ++ +K +++ ++I+
Sbjct: 171 -EELRD----------LYQTYHVL-VGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNIL 216
Query: 341 DCL 343
+ L
Sbjct: 217 EWL 219
Score = 31.6 bits (71), Expect = 0.57
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 53/135 (39%)
Query: 44 AAASAASALSIE--------------------EEGP-----LANNYGDVPL---QE-LQS 74
A AS A +SIE E G +A N G V QE LQ
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 75 VND---PQTGKWSEAV-----------SGREWTEVGALNGSLKDQEVL--IRGRRVSTVQ 118
V + +TG E V +G ++ AL+ VL I+ +++ ++
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAG----DLRALD---TVTNVLNFIKLQKIDIIE 1881
Query: 119 CLATVKPDSVSKEMV 133
++ + V + +
Sbjct: 1882 LQKSLSLEEV-EGHL 1895
Score = 31.2 bits (70), Expect = 0.84
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 32/142 (22%)
Query: 238 NIFRQFLLSENFVEIHT--PKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSIC 293
F L N +IH KL+ + L +Y + +A+ P K S
Sbjct: 89 TEFENCYLEGN--DIHALAAKLLQENDTTLVKTKELIKNYI-TARIMAKRPFDKKSNS-- 143
Query: 294 GDFGRVFETGPVFRAEDSYTHRHLCEFTG-------LDVEM-EIKKHYSEVMDIVDCLFV 345
+FRA + + F G + E+ ++ + Y +V L
Sbjct: 144 ----------ALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELRDLYQTYH---VLVGDLIK 189
Query: 346 TIFDSLNNVCKKELEAVAKQYP 367
++L+ + + L+A K +
Sbjct: 190 FSAETLSELIRTTLDA-EKVFT 210
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 49.8 bits (120), Expect = 1e-06
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 52/210 (24%)
Query: 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 275
F +S + R++L S ++E+ TP + +AG G +A R LD Y
Sbjct: 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAG---GAAA--RPFITHHNALDMTLY-- 225
Query: 276 QSACLAQSPQLH-KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KK 331
+ + +LH K++ I G +V+E G VFR E T RH EFT +E+
Sbjct: 226 ----MRIAIELHLKRL-IVGGLEKVYEIGRVFRNEGIST-RHNPEFT----MLELYEAYA 275
Query: 332 HYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEP-----------LKYKPKTLR- 379
+ ++M + + L I + +++ P +Y
Sbjct: 276 DFRDIMKLTENLIAHIATEVLG--TTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWR 333
Query: 380 -LTFEEGVQMLKDAGVEIDP---LGDLNTE 405
++ EE ++ K+ GVE+ P G + E
Sbjct: 334 QMSDEEARELAKEHGVEVAPHMTFGHIVNE 363
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 48.3 bits (116), Expect = 3e-06
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 53/211 (25%)
Query: 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 275
F ++S++ RQF+++ F+E+ TP + I G G SA R LD Y
Sbjct: 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIPG---GASA--RPFITHHNALDLDMY-- 234
Query: 276 QSACLAQSPQLH-KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KK 331
L +P+L+ K++ + G F RVFE FR E RH EFT ME+
Sbjct: 235 ----LRIAPELYLKRL-VVGGFERVFEINRNFRNEGISV-RHNPEFT----MMELYMAYA 284
Query: 332 HYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEP-----------LKYKP---KT 377
Y +++++ + LF T+ + ++ + F KY+P
Sbjct: 285 DYHDLIELTESLFRTLAQEVLG--TTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMA 342
Query: 378 LRLTFEEGVQMLKDAGVEIDP---LGDLNTE 405
F+ + + G+ ++ LG + TE
Sbjct: 343 DLDNFDAAKALAESIGITVEKSWGLGRIVTE 373
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 46.4 bits (111), Expect = 1e-05
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 34/141 (24%)
Query: 229 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 275
FR +++ R+F+ +F+E+ TP L I G G +A + LD +
Sbjct: 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIPG---GAAA--KPFVTHHNALDMEMF-- 255
Query: 276 QSACLAQSPQLH-KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KK 331
L +P+L+ K++ I G F RVFE FR E RH EFT ME
Sbjct: 256 ----LRIAPELYLKRL-IVGGFERVFEINRNFRNEGVSP-RHNPEFT----MMEFYAAYT 305
Query: 332 HYSEVMDIVDCLFVTIFDSLN 352
Y +MD + L
Sbjct: 306 DYRWLMDFTERLIRQAAVDAL 326
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 42.6 bits (100), Expect = 1e-04
Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 29/215 (13%)
Query: 176 SRAAKTP-ITIEDASRSEAEIEKASKEGVQLPRVNQDTR---LNNRVIDIRTLANQGIFR 231
S A P +T R E + + + + ++ L+ R D++ + +
Sbjct: 18 SHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEEREN 77
Query: 232 IQSQVGNIFRQFLLSENFVEIHTPKLI------AGSSEGGSAVFRLDYKGQ--------- 276
++ +F + F+EI +P LI + + + + ++
Sbjct: 78 YLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPML 137
Query: 277 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE-MEIKKHYSE 335
+ L L K D ++FE GP +R E HL EFT L M
Sbjct: 138 TPNLYNY--LRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTREN 194
Query: 336 VMDIVDCLF------VTIFDSLNNVCKKELEAVAK 364
+ I+ I V L+ +
Sbjct: 195 LESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHG 229
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.009
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 5 SEPPKVQEEVDSSSQSISK--KAAKKEAAKKAKEERRKEAEAAASAASAL 52
++ ++ +E +SI K + +K + + E E A L
Sbjct: 75 AQADRLTQE----PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL 120
Score = 33.2 bits (75), Expect = 0.077
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 1 MSTESEP--------PKVQEEVDSSSQSISKKAAKKEAAKKAKEE--RRKEAEAAASAAS 50
++ E E K +E+D++S+ + +E AKK EE +R+ + + +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKV--MEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 51 ALSIEEE 57
++
Sbjct: 138 NRIADKA 144
>1x49_A Interferon-induced, double-stranded RNA- activated protein
kinase; structure genomics, DSRM domain, structural
genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Length = 97
Score = 30.8 bits (70), Expect = 0.18
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASAAS 50
SK+ A+ AAK A + E + +
Sbjct: 65 SKQEARNAAAKLAVDILDNENKVDCHTSG 93
>3nku_A DRRA, SIDM; posttranslational modification, ampylation,
adenylylation, R RAB1, vesicular transport, protein
transport; HET: MSE PGE; 2.10A {Legionella pneumophila
subsp}
Length = 213
Score = 32.0 bits (72), Expect = 0.26
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 347 IFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 394
+FD+LNN+C++ A + YP +P+ P L T ++ MLKD V
Sbjct: 124 VFDALNNLCQRIFTASNQIYP-DPIGINPSRLIGTPDDLFGMLKDGMV 170
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure,
transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Length = 179
Score = 31.0 bits (70), Expect = 0.47
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAA 46
+K+ AK+ AAK A + E +
Sbjct: 154 TKQEAKQLAAKLAYLQILSEETGSG 178
Score = 28.7 bits (64), Expect = 2.6
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVP 68
+ + SKK AK AAK A E KE +A + + EG NY
Sbjct: 51 IIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIG-L 109
Query: 69 LQELQ 73
+ +
Sbjct: 110 INRIA 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.58
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 27 KKEAAKKAKEERRKEAEAAASAASALSIE 55
+K+A KK + K A +A AL+I+
Sbjct: 18 EKQALKKL-QASLK--LYADDSAPALAIK 43
Score = 27.6 bits (60), Expect = 5.8
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 357 KELEAVAKQYPFEPLKYKPK-TLRLTFE 383
K+L+A K Y P ++ T E
Sbjct: 23 KKLQASLKLY--AD-DSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 9.8
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 11/32 (34%)
Query: 163 QQVEVQIKKL------YCVSRAAKTPI--TIE 186
+Q +KKL Y A I T+E
Sbjct: 19 KQ---ALKKLQASLKLYADDSAPALAIKATME 47
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 31.2 bits (70), Expect = 0.59
Identities = 13/76 (17%), Positives = 23/76 (30%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTG 81
+ +KE A++ KE A A P ++ + + T
Sbjct: 206 DPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQVPSVPIQQFPTE 265
Query: 82 KWSEAVSGREWTEVGA 97
WS S +W+
Sbjct: 266 DWSAQPSTEDWSAAPT 281
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 31.0 bits (70), Expect = 0.64
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVE---MEIKKHYSEVMDIVDCLF 344
R+FE G +R E +HL EFT L++ +++ + + D+ +
Sbjct: 151 RIFEIGTCYRKESQGA-QHLNEFTMLNLTELGTPLEERHQRLEDMARWVL 199
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding
protein, hydrolase; NMR {Rattus norvegicus} SCOP:
d.50.1.1 PDB: 2l3c_A
Length = 73
Score = 27.6 bits (62), Expect = 1.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 22 SKKAAKKEAAKKA 34
+KK AK AA+KA
Sbjct: 53 TKKKAKLHAAEKA 65
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 30.0 bits (68), Expect = 1.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 189 SRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 230
+ ++A++ V+L V + T L VIDIRTL ++G+F
Sbjct: 1 ADTKAKLTLNGDTAVELD-VLKGT-LGQDVIDIRTLGSKGVF 40
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 28.5 bits (64), Expect = 1.9
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 23 KKAAKKEAAKKAKEERRKEAEAAA 46
K + +E ++ + AA
Sbjct: 89 MKRVGDYYVFEKRESKKSKGGEAA 112
Score = 26.5 bits (59), Expect = 6.8
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 23 KKAAKKEAAKKAKEERRKEAEAAASAAS 50
+ K E+R+ ++ A+
Sbjct: 85 EGYEMKRVGDYYVFEKRESKKSKGGEAA 112
>2l33_A Interleukin enhancer-binding factor 3; structural genomics,
northeast structural genomics consortiu PSI-biology,
protein structure initiative, DRBM; NMR {Homo sapiens}
Length = 91
Score = 27.8 bits (62), Expect = 2.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASA 48
+KK AK AA A E+ + A A
Sbjct: 63 NKKVAKAYAALAALEKLFPDTPLALDA 89
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 29.5 bits (67), Expect = 2.4
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 315 RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDS---LNNVCKKELEAVAKQY 366
RHL L+ EM+I+ SE+ D L I S +NN+ KKEL+A A+ Y
Sbjct: 397 RHL---AKLE-EMKIRGEQSELEKERDQL-QGILASERKMNNLLKKELQADAQAY 446
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics,
PSI-biology, protein structure initiati northeast
structural genomics consortium, NESG; 1.90A {Homo
sapiens}
Length = 75
Score = 26.8 bits (60), Expect = 3.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 22 SKKAAKKEAAKKA 34
+KK AK AA A
Sbjct: 53 NKKVAKAYAALAA 65
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding
protein, hydrolase; NMR {Rattus norvegicus} SCOP:
d.50.1.1 PDB: 2l2k_B
Length = 71
Score = 26.5 bits (59), Expect = 3.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 22 SKKAAKKEAAKKA 34
+KK AK AA+ A
Sbjct: 50 NKKLAKARAAQSA 62
>2dix_A Interferon-inducible double stranded RNA- dependent protein
kinase activator A; structure genomics, DSRM domain,
hypothetical protein PRKRA; NMR {Homo sapiens} SCOP:
d.50.1.1
Length = 84
Score = 26.9 bits (60), Expect = 3.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASA 48
SKK AK AA+ A + A +S
Sbjct: 58 SKKLAKHRAAEAAINILKANASGPSSG 84
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 27.3 bits (60), Expect = 4.0
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 23 KKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLA 61
K K A K+ +AA A + IE + L+
Sbjct: 73 LKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDTSLS 111
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding,
endonuclease, HEL hydrolase, nucleotide-binding,
phosphoprotein, RN binding; HET: MSE; 1.68A {Mus
musculus} PDB: 3c4t_A 2eb1_A
Length = 265
Score = 28.2 bits (63), Expect = 4.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKA 34
+V + S + AK AA++A
Sbjct: 232 EVVGKGKFKGVGRSYRIAKSAAARRA 257
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 28.1 bits (63), Expect = 4.9
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 77 DPQTGKWSEAVS---GREWTEVGALNGSL 102
P+ +W + R V L+ +
Sbjct: 190 YPERNEWRMITAMNTIRSGAGVCVLHNCI 218
Score = 27.7 bits (62), Expect = 6.8
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 77 DPQTGKWSEAVS---GREWTEVGALNGSL 102
+P T +WS R VG ++G +
Sbjct: 96 NPMTNQWSPCAPMSVPRNRIGVGVIDGHI 124
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 28.4 bits (64), Expect = 4.9
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEM 327
R+ V+RA+ + + EF L VE+
Sbjct: 105 RLAYQSNVYRAQQNEGGK-PAEFEQLGVEL 133
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing,
hydrolase; NMR {Drosophila melanogaster}
Length = 114
Score = 27.2 bits (60), Expect = 4.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASA 48
SKK A+ EAA A + + A +
Sbjct: 83 SKKVARIEAAATALRSFIQFKDGAVLS 109
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 28.5 bits (63), Expect = 5.0
Identities = 11/112 (9%), Positives = 25/112 (22%), Gaps = 19/112 (16%)
Query: 292 ICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI--KKHYSEVMDIVDCLFVTIFD 349
++ + G + D + +Y M + +
Sbjct: 224 EVINYYMPLQYGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKEITKGLSAWCE 283
Query: 350 SL------------NNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 389
+ ++ K E + + KP E +QM
Sbjct: 284 NYSKRAKYLASIETDSEIKANYEKIEEVMGNIA-HKKPANFW----EAIQMT 330
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure,
protein/RNA, protein DSRBD, RNA hairpin; NMR
{Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Length = 76
Score = 26.1 bits (58), Expect = 5.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 22 SKKAAKKEAAKKA 34
KK +KK AA+K
Sbjct: 57 GKKVSKKRAAEKM 69
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA
binding protein; 2.14A {Homo sapiens}
Length = 90
Score = 26.5 bits (59), Expect = 5.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 22 SKKAAKKEAAKKA 34
SKKAAK +AA+ A
Sbjct: 64 SKKAAKHKAAEVA 76
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing,
gene regulation-RNA complex; 2.20A {Homo sapiens}
Length = 88
Score = 26.5 bits (59), Expect = 5.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 22 SKKAAKKEAAKKA 34
SKK AK+ AA K
Sbjct: 66 SKKLAKRNAAAKM 78
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.50.1.1
Length = 89
Score = 26.5 bits (59), Expect = 5.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 22 SKKAAKKEAAKKA 34
+KK AKK AA+
Sbjct: 57 NKKIAKKNAAEAM 69
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 27.5 bits (60), Expect = 5.9
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 17 SSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEE 57
+ + +K + ++A E+ R A S++ S+E++
Sbjct: 77 NLATFNKLVSYRKAMYHTLEKARVRAGKTFSSSPGESLEDQ 117
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 28.1 bits (63), Expect = 6.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 315 RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDS---LNNVCKKELEAVAKQY 366
RHL L+ EMEI+ E+ + ++ L N+ EL+ AK++
Sbjct: 691 RHL---AKLE-EMEIRHEQDELSAKAAII-REQLENPESLKNLIISELKEDAKKF 740
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition,
DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Length = 236
Score = 28.0 bits (61), Expect = 6.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 22 SKKAAKKEAAKKA 34
+KK AK AA+ A
Sbjct: 207 NKKLAKARAAQSA 219
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA
complex, protein-RNA interactions, RNA-bining protein;
1.90A {Xenopus laevis} SCOP: d.50.1.1
Length = 69
Score = 26.0 bits (58), Expect = 6.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 22 SKKAAKKEAAKKA 34
SK+ AK+ AA+K
Sbjct: 51 SKQVAKRVAAEKL 63
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 27.6 bits (62), Expect = 7.7
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 77 DPQTGKWSEAVS---GREWTEVGALNGSL 102
+ T +W+ R VG LN L
Sbjct: 179 NATTNEWTYIAEMSTRRSGAGVGVLNNLL 207
Score = 27.6 bits (62), Expect = 7.7
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 77 DPQTGKWSEAVS---GREWTEVGALNGSL 102
DP +W+ + R LNG L
Sbjct: 83 DPVKDQWTSVANMRDRRSTLGAAVLNGLL 111
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos
taurus} PDB: 3a7u_A
Length = 347
Score = 27.6 bits (61), Expect = 7.9
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 299 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKE 358
++ P F + S+T H + V +++K I C L +
Sbjct: 246 IYGKTPKFSVDTSFTVLHEQSHVEIKVFIDVKNGR-----IEVCNIEAPDHWLPLEICDQ 300
Query: 359 LEAVAKQYPFEP 370
L + F P
Sbjct: 301 LNSSLIGSKFSP 312
>2pfy_A Putative exported protein; extracytoplasmic solute receptor,
tripartite ATP independent periplasmic transport,
pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Length = 301
Score = 27.7 bits (62), Expect = 8.1
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 328 EIKKHYSEVMDIVDCLFVTI----FDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 383
+ K+Y + + FV F L ++ + + +T R
Sbjct: 194 DYVKYYYDAQAFIPQSFVIANKRAFQRLPAEVRQAVLDAGA----KAEIRGWQTARAKTR 249
Query: 384 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417
E L G+ ++PL + + +G ++
Sbjct: 250 ELTDTLARNGMSVEPLPPQLAKELQAIGATMVSD 283
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: d.50.1.1
Length = 97
Score = 26.3 bits (58), Expect = 8.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 22 SKKAAKKEAAKKA 34
SKK AK A K
Sbjct: 65 SKKTAKLHVAVKV 77
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 27.6 bits (62), Expect = 8.2
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 298 RVFETGPVFRAEDSYTHRHLCEFTGLDVEM 327
R G +FR E + R E + +E+
Sbjct: 119 RYSYFGKIFRKEKRHKGR-STENYQIGIEL 147
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 8.3
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVP-LQELQ 73
+ S +KA E A + K A+AA + P AN D P L+ +
Sbjct: 747 ELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQ------PRANIQLDFPELKPYK 800
Query: 74 SVNDPQTGKWSEAVS 88
V + +
Sbjct: 801 QVKQIAPAELEGLLD 815
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 27.8 bits (63), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 13 EVDSSSQS--ISKKAAKKEAAKKAK 35
EVDSS + I+ A KEA +K
Sbjct: 574 EVDSSEMAFKIAGSMAIKEAVQKGD 598
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain,
DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.50.1.1
Length = 89
Score = 25.7 bits (57), Expect = 8.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 22 SKKAAKKEAAKKA 34
SKK AK+ AA K
Sbjct: 67 SKKLAKRNAAAKM 79
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein,
gene regulation; 3.00A {Arabidopsis thaliana} PDB:
2l2m_A
Length = 76
Score = 25.7 bits (57), Expect = 9.0
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 22 SKKAAKKEAAKKA 34
+KK A+ A + A
Sbjct: 56 TKKDAEISAGRTA 68
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 27.5 bits (62), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 13 EVDSSSQS--ISKKAAKKEAAKKAK 35
+VDSS + I+ A KEAAKK
Sbjct: 573 DVDSSEMAFKIAASLALKEAAKKCD 597
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 27.5 bits (62), Expect = 9.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 13 EVDSSSQS--ISKKAAKKEAAKKAK 35
+VDSS + ++ A KE KKAK
Sbjct: 585 DVDSSELAFKLAASIAFKEGFKKAK 609
>1x48_A Interferon-induced, double-stranded RNA- activated protein
kinase; structure genomics, DSRM domain, structural
genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Length = 88
Score = 25.8 bits (56), Expect = 9.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASAASALS 53
+K+ AK+ AAK+A ++ K A + S
Sbjct: 56 TKQEAKQLAAKEAYQKLLKSPPKTAGTSGPSS 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.355
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,011,933
Number of extensions: 365569
Number of successful extensions: 1050
Number of sequences better than 10.0: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 99
Length of query: 417
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 321
Effective length of database: 4,021,377
Effective search space: 1290862017
Effective search space used: 1290862017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)