RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014856
(417 letters)
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 168 bits (426), Expect = 4e-49
Identities = 130/238 (54%), Positives = 165/238 (69%), Gaps = 7/238 (2%)
Query: 182 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 241
PI +EDASRSEAE E A LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V +FR
Sbjct: 1 PILLEDASRSEAEAEAA-----GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFR 55
Query: 242 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFE 301
++L ++ F E+HTPKL+ SEGGS+VF + Y A LAQSPQ +KQ I DF RV+E
Sbjct: 56 EYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 115
Query: 302 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEA 361
GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D + LFV IF L E+E
Sbjct: 116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 175
Query: 362 VAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417
V KQYP E K K +RLT++EG++ML+ AG EI DL+TE+E+ LG+LV +K
Sbjct: 176 VRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDK 233
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 124 bits (313), Expect = 2e-33
Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 217 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 276
R + +R + ++Q+ + FR++L ++F EI TPK++ +EGGS +F +DY +
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEK 61
Query: 277 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 336
A LAQSPQ + + G F RV+E PV+R E+ +T RHL E+ LDVEM ++
Sbjct: 62 RAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL 120
Query: 337 MDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI 396
M + + L + + N E+ + +P P LT E ++LK+ +
Sbjct: 121 MRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPR----LTHAEAKRILKE-ELGY 175
Query: 397 DPLGDLNTESERKLGQLVLEK 417
DL+ E+ER LG+ E+
Sbjct: 176 PVGQDLSEEAERLLGEYAKER 196
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 125 bits (314), Expect = 4e-33
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 4/186 (2%)
Query: 208 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA 267
++ RL R +D+R + ++++ ++ R+F+ F++I TP L + EG
Sbjct: 10 NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARD 69
Query: 268 --VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 325
V +KG+ L QSPQL KQ+ + F R ++ FR ED R EFT +DV
Sbjct: 70 YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDV 128
Query: 326 EMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 385
E +V ++++ L ++ + V + + LR +
Sbjct: 129 ETSF-MTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRDESKWA 187
Query: 386 VQMLKD 391
+ D
Sbjct: 188 PLWVID 193
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 124 bits (313), Expect = 6e-33
Identities = 61/234 (26%), Positives = 90/234 (38%), Gaps = 30/234 (12%)
Query: 182 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 241
P ++ R E E E +++ RL R +D+R Q R++ +V
Sbjct: 3 PFPVDAGWRGEEEKE-----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIW 51
Query: 242 QFLLSENFVEIHTPKLIAGSSEGGSAVF--RLDYKGQSACLAQSPQLHKQMSICGDFGRV 299
FL E FV++ TP L + EG G L QSPQL KQM + R
Sbjct: 52 DFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRY 111
Query: 300 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKEL 359
F+ FR ED R +FT LD+EM +V+++ + L +F V
Sbjct: 112 FQIARCFRDEDLRADRQ-PDFTQLDLEMSF-VEVEDVLELNERLMAHVFREALGVELP-- 167
Query: 360 EAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID-----PLGDLNTESER 408
PF L Y+ R ++ L+ G PL + + E E
Sbjct: 168 ------LPFPRLSYEEAMERYGSDK--PDLRREGFRFLWVVDFPLLEWDEEEEA 213
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 118 bits (297), Expect = 7e-31
Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 4/201 (1%)
Query: 205 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 264
+ DTRLNNR +D+R IF+I+S V R F F+EIHTPK+IA ++EG
Sbjct: 9 KVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEG 68
Query: 265 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 324
G+ +F + Y + A LA+SPQL+K++ + RV+E P+FRAE+ T RHL E +D
Sbjct: 69 GTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSID 128
Query: 325 VEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 384
EM + EVM ++ L + + KEL+ FE + K R+++++
Sbjct: 129 SEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELD----ILNFELEEPKLPFPRVSYDK 184
Query: 385 GVQMLKDAGVEIDPLGDLNTE 405
+++L D G EI D++TE
Sbjct: 185 ALEILGDLGKEIPWGEDIDTE 205
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 112 bits (280), Expect = 8e-29
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 10/148 (6%)
Query: 219 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRL 271
++I + IQ+++ F + E F + L + G +
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
Query: 272 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEI 329
+ G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 122
Query: 330 KKHYSEVMDIVDCLFVTIFDSLNNVCKK 357
++M +++ L +F +
Sbjct: 123 -AKMEDIMRLIERLVYGLFRKAEEWTGR 149
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 106 bits (266), Expect = 2e-26
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 9/214 (4%)
Query: 210 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 268
Q+ R R +D I ++ F ++S++ RQF+++ F+E+ TP + +
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61
Query: 269 FR--LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 326
F + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 62 FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELY 120
Query: 327 MEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKEL--EAVAKQYPFEPLKYKPKTLRLTFEE 384
M ++ +++++ + LF T+ + K PFE L + + E
Sbjct: 121 MAYADYH-DLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPET 179
Query: 385 GVQMLKDAGVEIDPLGDLN--TESERKLGQLVLE 416
+ L + + E LG++V E
Sbjct: 180 DMADLDNFDAAKALAESIGITVEKSWGLGRIVTE 213
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 58.9 bits (142), Expect = 2e-11
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 31/140 (22%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGAL-NGSLKDQEVLIRGR-------- 112
+NYG +PL +QS + +TG ++ + L D+EVL R R
Sbjct: 3 DNYGKLPL--IQSRDSDRTG--------QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQG 52
Query: 113 ----------RVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 161
+ S +Q L ++SK MV++ SL+ ESIV V G+V D IK A
Sbjct: 53 ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112
Query: 162 -TQQVEVQIKKLYCVSRAAK 180
Q +E+ I K+Y +S +
Sbjct: 113 TVQNLEIHITKIYTISETPE 132
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 30.8 bits (69), Expect = 0.080
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 23/100 (23%)
Query: 96 GALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPDSVSKEMVRFVRS 138
+ L Q+V + G R VQ T V E+ + +
Sbjct: 8 SEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI--TAPKKKVDPELFKLIPK 65
Query: 139 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 178
L +E +V V GVV A E+ +K+ ++RA
Sbjct: 66 LRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRA 101
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.4 bits (68), Expect = 0.094
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAAS 47
+ + SKK AK AAK A E KE +A +
Sbjct: 51 IIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 89
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 26.9 bits (59), Expect = 1.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKA 34
+ S + SKK AK +AA+
Sbjct: 46 TIDGVTYGSGTASSKKLAKNKAARAT 71
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 28.0 bits (62), Expect = 2.6
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 88 SGREWTEVGALNGSLKDQEVLIRGR---RVSTVQCLATVKPDSVSKEMVRFVRSLSNES 143
SG +T++ A++GS D L R + + + + D K+ F+ N S
Sbjct: 474 SGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNS 532
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 27.1 bits (60), Expect = 2.9
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 317 LCEFTGLDVEMEIKKHYSEVMDI--VDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYK 374
+ G E ++ + + + V+ + V IF + N C + K LK
Sbjct: 48 FLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVN-CAIIANGITKACRELELK-V 105
Query: 375 PKTLRLT---FEEGVQMLKDAGVEIDPLGDLN 403
P +RL E +L ++G+ I DL
Sbjct: 106 PLVVRLEGTNVHEAQNILTNSGLPITSAVDLE 137
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 24.8 bits (54), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKA 34
+V + ++ + +KK A+KEAA+ A
Sbjct: 39 RVNGKTIATGKGRTKKEAEKEAARIA 64
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 68
Score = 24.6 bits (53), Expect = 7.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 22 SKKAAKKEAAKKA 34
SKK A++ AA++
Sbjct: 51 SKKEAEQRAAEEL 63
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.0 bits (54), Expect = 7.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASAA 49
SK+ A+ AAK A + E + +
Sbjct: 58 SKQEARNAAAKLAVDILDNENKVDCHTS 85
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.5 bits (58), Expect = 7.6
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 321 TGLDVEMEIKKHYSEVMD-IVDCLFVTIFDS---LNNVCKKELEAVAKQY 366
TGL+ E ++ Y E++D I + L I S L V ++ELE V +Q+
Sbjct: 438 TGLEHE-KLLDEYKELLDQIAELL--RILGSADRLMEVIREELELVREQF 484
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.8 bits (53), Expect = 7.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKE 41
K+ ++ S +K+ AK+ AAK A + E
Sbjct: 51 KMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSE 83
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 365
Score = 26.1 bits (57), Expect = 8.0
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 329 IKKHYSEVMDIV--DCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 386
K +Y + + + VT+ KK A + E + +T E
Sbjct: 123 SKTYYPSISGLDPKNVFTVTVMPC---TSKK---FEADRPQMEKDGLRDIDAVITTRELA 176
Query: 387 QMLKDAGVEIDPLGD 401
+M+KDA + L D
Sbjct: 177 KMIKDAKIPFAKLED 191
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 25.2 bits (55), Expect = 8.9
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 136 VRSLSNESIVDVIGVV 151
+ + S +S+VD+IG+
Sbjct: 10 LENKSKDSLVDIIGIC 25
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
virus type 1 [TaxId: 11676]}
Length = 316
Score = 25.8 bits (57), Expect = 9.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 98 LNGSLKDQEVLIR 110
LNGSL ++EV+IR
Sbjct: 115 LNGSLAEEEVVIR 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.355
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,421,606
Number of extensions: 65700
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 33
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.0 bits)