Query 014857
Match_columns 417
No_of_seqs 130 out of 690
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 5E-136 1E-140 1068.9 24.9 377 41-417 40-416 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 2E-124 4E-129 1008.0 30.9 368 49-417 1-371 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 2.6E-76 5.5E-81 635.7 28.6 337 55-416 1-342 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 3.3E-68 7.1E-73 569.3 15.7 318 71-416 1-321 (624)
5 TIGR00733 putative oligopeptid 98.3 1E-05 2.2E-10 87.9 14.2 221 72-339 2-226 (591)
6 COG1297 Predicted membrane pro 87.3 2.5 5.5E-05 46.5 8.6 168 67-259 10-179 (624)
7 TIGR02106 cyd_oper_ybgT cyd op 45.6 23 0.0005 24.4 2.5 19 76-94 5-23 (30)
8 PF08173 YbgT_YccB: Membrane b 44.4 25 0.00055 23.8 2.5 18 76-93 5-22 (28)
9 PRK14749 hypothetical protein; 41.6 29 0.00064 23.8 2.5 19 76-94 5-23 (30)
10 PF11166 DUF2951: Protein of u 26.4 57 0.0012 28.1 2.4 17 74-90 72-88 (98)
11 PF04995 CcmD: Heme exporter p 25.1 87 0.0019 23.0 3.0 25 390-414 5-30 (46)
12 TIGR03141 cytochro_ccmD heme e 24.9 81 0.0018 23.1 2.8 26 390-415 6-32 (45)
13 COG4890 Predicted outer membra 24.7 79 0.0017 22.5 2.5 19 76-94 5-23 (37)
14 PF09726 Macoilin: Transmembra 23.9 63 0.0014 36.7 3.0 60 211-277 52-115 (697)
15 KOG3817 Uncharacterized conser 23.5 42 0.00091 35.4 1.4 18 39-56 422-439 (452)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-136 Score=1068.92 Aligned_cols=377 Identities=61% Similarity=1.098 Sum_probs=367.9
Q ss_pred cchhhhccccCChhHhHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhh
Q 014857 41 ITEAVVEEEENSPVKQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMA 120 (417)
Q Consensus 41 ~~~~~~~~~~~SPy~eVra~v~~~DDp~~p~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~yplG~~~a 120 (417)
+|+++++++|||||||||++||++|||++|++|||||+||+++|+++|++||||++|+|+++|+.+++|+++||+||+||
T Consensus 40 ~~e~~~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma 119 (761)
T KOG2262|consen 40 DDENELEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMA 119 (761)
T ss_pred cccccccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHH
Confidence 33333567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCceeecCCCceeeecCCCCCcccceeeeeecccCCcchhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhhhh
Q 014857 121 AKLTDRVFFKSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQVLGFGWAG 200 (417)
Q Consensus 121 ~~lP~~~~~~~~~~~f~LNPGPFniKEH~litIma~~a~~~aya~~ii~~q~lfy~~~~~~~~~ill~lStQliGyGlAG 200 (417)
|+||+|++..++||+|+|||||||+|||++|||+||++++++||+++|.+|+.|||+++++++++|++++||++|||+||
T Consensus 120 ~~lP~~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAG 199 (761)
T KOG2262|consen 120 KTLPTWKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAG 199 (761)
T ss_pred HhCCceeeecCcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhh
Confidence 99999998327899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceecCCCccCCchhHHHHHHHHhhhcccCCCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCce
Q 014857 201 IFRRYLVEPAAMWWPANLVQVSLFRALHEREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVV 280 (417)
Q Consensus 201 l~R~~LVyP~~miWP~~L~~vaL~~aLH~~~~~~~~~isr~rfF~~~f~~~F~y~~~P~yifp~Ls~fs~~cwi~P~n~~ 280 (417)
|+||+||||++|+||++|++|+||||||++|++.+.++||+|||+++|+++|+|||||+||||+||+|||+|||.|+|++
T Consensus 200 l~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~ 279 (761)
T KOG2262|consen 200 LFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSIT 279 (761)
T ss_pred hhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHH
Confidence 99999999999999999999999999999999888789999999999999999999999999999999999999999999
Q ss_pred EEEecccccCccccccccchhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccCcchhccccCCc
Q 014857 281 AQQVGSGLYGLGVAAVGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGR 360 (417)
Q Consensus 281 v~~lfGg~~GLGl~p~tfDWn~I~~~~~sPL~~P~~a~~N~~~G~vl~~~ii~p~lyy~N~w~s~~~Pi~S~~lfd~~G~ 360 (417)
++|||||.+|||++|+||||++|++|.+|||++||||++|+++|+++++||++|++||+|+|+++||||+|+++||++|+
T Consensus 280 ~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~ 359 (761)
T KOG2262|consen 280 ANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGN 359 (761)
T ss_pred HHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeeCCCCccCHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 014857 361 EYNITAIIDSNFHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGSWL 417 (417)
Q Consensus 361 ~Ynvs~Il~~d~~ld~~aY~~ysp~yls~~~~l~y~~~fA~~ta~i~h~~L~h~~~~ 417 (417)
+||++||||+|++||.+|||+|||+|+|+.|+++||++||+++|+|+|++||||||+
T Consensus 360 sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdi 416 (761)
T KOG2262|consen 360 SYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDI 416 (761)
T ss_pred EeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHH
Confidence 999999999999999999999999999999999999999999999999999999974
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=2e-124 Score=1007.97 Aligned_cols=368 Identities=34% Similarity=0.666 Sum_probs=357.0
Q ss_pred ccCChhHhHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhccCCcee
Q 014857 49 EENSPVKQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVF 128 (417)
Q Consensus 49 ~~~SPy~eVra~v~~~DDp~~p~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~yplG~~~a~~lP~~~~ 128 (417)
|+||||||||++|+++|||++|++|||+|+||++++++++++||+|++|+|+++++++++||++||+||+|||+||+|++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ecCCCceeeecCCCCCcccceeeeeecccCCcchhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhhhhhcccceec
Q 014857 129 FKSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVE 208 (417)
Q Consensus 129 ~~~~~~~f~LNPGPFniKEH~litIma~~a~~~aya~~ii~~q~lfy~~~~~~~~~ill~lStQliGyGlAGl~R~~LVy 208 (417)
+.++++|+|||||||+|||++|+||||++.+.+|+++++.+|++|||++++++++|++++|||++|||+||++||++||
T Consensus 81 -~~~g~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~ 159 (681)
T TIGR00727 81 -TIRGRKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVVY 159 (681)
T ss_pred -ccccceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEec
Confidence 3345679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCchhHHHHHHHHhhhcccC--CCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecc
Q 014857 209 PAAMWWPANLVQVSLFRALHEREKR--ASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGS 286 (417)
Q Consensus 209 P~~miWP~~L~~vaL~~aLH~~~~~--~~~~isr~rfF~~~f~~~F~y~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfG 286 (417)
|++|+||++|++++|+|+||+++++ ++|++||+|||+++|+++|+|+|+|+||||+||+|||+|||+|||+++|||||
T Consensus 160 p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g 239 (681)
T TIGR00727 160 PARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFG 239 (681)
T ss_pred cccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhc
Confidence 9999999999999999999986643 34789999999999999999999999999999999999999999999999999
Q ss_pred cccCccccc-cccchhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccCcchhccccCCceeecc
Q 014857 287 GLYGLGVAA-VGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGREYNIT 365 (417)
Q Consensus 287 g~~GLGl~p-~tfDWn~I~~~~~sPL~~P~~a~~N~~~G~vl~~~ii~p~lyy~N~w~s~~~Pi~S~~lfd~~G~~Ynvs 365 (417)
|.+|||++| +|||||+|+++.+|||++|+|+++|+++|+++++||++|++||+|+|+++||||+||++|||+|++||||
T Consensus 240 ~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~vs 319 (681)
T TIGR00727 240 GSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNVT 319 (681)
T ss_pred cccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccccc
Confidence 999999999 8999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCccCHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 014857 366 AIIDSNFHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGSWL 417 (417)
Q Consensus 366 ~Il~~d~~ld~~aY~~ysp~yls~~~~l~y~~~fA~~ta~i~h~~L~h~~~~ 417 (417)
||||+|++||++|||||||||++++|+++||++||+++|+++|++|||||++
T Consensus 320 ~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i 371 (681)
T TIGR00727 320 EILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLL 371 (681)
T ss_pred eeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999863
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.6e-76 Score=635.68 Aligned_cols=337 Identities=38% Similarity=0.627 Sum_probs=316.7
Q ss_pred HhHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhccCCceeecCCCc
Q 014857 55 KQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPL 134 (417)
Q Consensus 55 ~eVra~v~~~DDp~~p~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~yplG~~~a~~lP~~~~~~~~~~ 134 (417)
||||+ ||++|||++|++|||+|++|++++++++++||+|.+|++.++++++++||++||+||+|+|+||+|+ ++
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~-----~~ 74 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE-----GW 74 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc-----cc
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999987 36
Q ss_pred eeeecCCCCCcccceeeeeecccCCcchhHHHHHHHHHHHhcccchHHHHHHHHHHHhh--hhhhhhhhcccceecCCCc
Q 014857 135 EFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQV--LGFGWAGIFRRYLVEPAAM 212 (417)
Q Consensus 135 ~f~LNPGPFniKEH~litIma~~a~~~aya~~ii~~q~lfy~~~~~~~~~ill~lStQl--iGyGlAGl~R~~LVyP~~m 212 (417)
+|+|||||||+|||+++++|||++.+.+++++++.+|++||+++.++++++++++++|+ +|+|+||++||++|+|++|
T Consensus 75 ~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l 154 (654)
T TIGR00728 75 KFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKL 154 (654)
T ss_pred ceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccc
Confidence 78999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCchhHHHHHHHHhhhcccCC-CCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecccccCc
Q 014857 213 WWPANLVQVSLFRALHEREKRA-SGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGL 291 (417)
Q Consensus 213 iWP~~L~~vaL~~aLH~~~~~~-~~~isr~rfF~~~f~~~F~y~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfGg~~GL 291 (417)
+||+.+++++|+++||++.... +++++| +++.+ |.++|+.++.++|+||+.|+++.++ +|| |+
T Consensus 155 ~~P~~la~a~l~~al~~~~~~~~g~~~~r---~l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---gl 218 (654)
T TIGR00728 155 PWPSGLATAELFKALHGKFHTANGDTIAK---NLLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---GL 218 (654)
T ss_pred cCCcccHHHHHHHHhhhccCccCCCccch---hHHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---cc
Confidence 9999999999999998754432 344555 33222 8899999999999999999988885 555 89
Q ss_pred cccccccchhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccCcchhccccCCceeec-ceeeCC
Q 014857 292 GVAAVGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGREYNI-TAIIDS 370 (417)
Q Consensus 292 Gl~p~tfDWn~I~~~~~sPL~~P~~a~~N~~~G~vl~~~ii~p~lyy~N~w~s~~~Pi~S~~lfd~~G~~Ynv-s~Il~~ 370 (417)
|+++++|||+++.++.++|+++|+++++|+++|.+++.|+++|++||+|+|+++++|++|++.||++|.+||. ++|+++
T Consensus 219 g~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~ 298 (654)
T TIGR00728 219 GSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVVD 298 (654)
T ss_pred cccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEeC
Confidence 9999999999997788999999999999999999999999999999999999999999999999999999998 999988
Q ss_pred C-CccCHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014857 371 N-FHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGSW 416 (417)
Q Consensus 371 d-~~ld~~aY~~ysp~yls~~~~l~y~~~fA~~ta~i~h~~L~h~~~ 416 (417)
+ .++|++||++|||+|++++| |+++||+++++++|++++|+|+
T Consensus 299 ~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ 342 (654)
T TIGR00728 299 GLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRD 342 (654)
T ss_pred CCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHH
Confidence 8 79999999999999999999 9999999999999999999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=3.3e-68 Score=569.35 Aligned_cols=318 Identities=37% Similarity=0.647 Sum_probs=303.4
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhccCCceeecCCCceeeecCCCCCccccee
Q 014857 71 VLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVKEHVL 150 (417)
Q Consensus 71 ~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~yplG~~~a~~lP~~~~~~~~~~~f~LNPGPFniKEH~l 150 (417)
|+|||++++|++++++++++||+|.+|++.+.++++++||++||+||+|+| .++++.|||||||+|||++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~----------~~~~~~ln~gp~~~kE~~~ 70 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLAR----------IGWRFSLNPGPFTIKENNL 70 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHh----------hccccccCCCCCCHHHHHH
Confidence 689999999999999999999999999999999999999999999999998 1245679999999999999
Q ss_pred eeeecccCCcchhHHHHHHH--HHHHhcccchHHHHHHHHHHHhhhhhhhhhhcccceecCCCccCCchhHHHHHHHHhh
Q 014857 151 ITIFANSGAGSVYAIHIVTV--VKVFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRALH 228 (417)
Q Consensus 151 itIma~~a~~~aya~~ii~~--q~lfy~~~~~~~~~ill~lStQliGyGlAGl~R~~LVyP~~miWP~~L~~vaL~~aLH 228 (417)
+.+||+++++.+++.+++.+ |..||+++++++.++++++++|++|+|+||++||++|+|.+|+||+.+++++++++||
T Consensus 71 vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh 150 (624)
T PF03169_consen 71 VQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALH 150 (624)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhc
Confidence 99999999999999999999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecccccCccccccccchhhhhhhCC
Q 014857 229 EREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGLGVAAVGIDWSTISSYLG 308 (417)
Q Consensus 229 ~~~~~~~~~isr~rfF~~~f~~~F~y~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfGg~~GLGl~p~tfDWn~I~~~~~ 308 (417)
+++.. +..++|+|+|+++|+++|+|+|+|+|+||+|+.++|+||++|+|++++++||+.. ++||||.+. .+
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~~--~g 221 (624)
T PF03169_consen 151 SGGGW-REAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPIL--IG 221 (624)
T ss_pred cCccc-hhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHHh--cC
Confidence 98821 1235899999999999999999999999999999999999999999999998766 999999996 68
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhhhhhc-cccCCccccCcchhccccCCceeecceeeCCCCccCHHHHHhcCCCcc
Q 014857 309 SPLASPWFATANVAAGFVLVMYVLTPLCYWL-NIYNAKTFPIFSDQLFTTTGREYNITAIIDSNFHIDIAAYQREGPLYL 387 (417)
Q Consensus 309 sPL~~P~~a~~N~~~G~vl~~~ii~p~lyy~-N~w~s~~~Pi~S~~lfd~~G~~Ynvs~Il~~d~~ld~~aY~~ysp~yl 387 (417)
+|+++|+++++|.++|.+++.|++.|++||+ |.|+++++|++|+++||++|+ +|+++|.++|++||++++
T Consensus 222 ~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~~~ 292 (624)
T PF03169_consen 222 SGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPMYG 292 (624)
T ss_pred CCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHHHH
Confidence 9999999999999999999989999999999 999999999999999999999 889999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014857 388 SIFFATTYGLGFAALTATIVHVALFHGSW 416 (417)
Q Consensus 388 s~~~~l~y~~~fA~~ta~i~h~~L~h~~~ 416 (417)
++.++++|+..|+.++++++|.+++|+|+
T Consensus 293 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~~ 321 (624)
T PF03169_consen 293 SGLFALSYGWSFAALTASIVHAILWHWKA 321 (624)
T ss_pred hHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=98.28 E-value=1e-05 Score=87.91 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=158.7
Q ss_pred cchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhccCCceeecCCCceeeecCCCCCcccceee
Q 014857 72 LTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVKEHVLI 151 (417)
Q Consensus 72 ~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~yplG~~~a~~lP~~~~~~~~~~~f~LNPGPFniKEH~li 151 (417)
.|+|+.++|++++++.++.|....+|.=-..=.++..-++++-+=|++. ++|++|+.++
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~---------------------~~t~~Enniv 60 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR---------------------DRSILENNMV 60 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc---------------------cCChhHHHHH
Confidence 6999999999999999999999999976665566777777776666431 2699999999
Q ss_pred eeecccCCcchhHHHHHHHHH-HHh-c--ccchHHHHHHHHHHHhhhhhhhhhhcccceecCCCccCCchhHHHHHHHHh
Q 014857 152 TIFANSGAGSVYAIHIVTVVK-VFY-K--QHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRAL 227 (417)
Q Consensus 152 tIma~~a~~~aya~~ii~~q~-lfy-~--~~~~~~~~ill~lStQliGyGlAGl~R~~LVyP~~miWP~~L~~vaL~~aL 227 (417)
--+|+++.+-+ . ++.+.. ++. + ++++++.-++.++.--++|--++=.+||.+|...+.-||+--.+.-++++-
T Consensus 61 QT~asA~~~~a--g-~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g 137 (591)
T TIGR00733 61 QTAASAAGTLS--S-VIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAG 137 (591)
T ss_pred HHHHHHHHHHH--H-HHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcc
Confidence 77777655333 2 333332 322 2 357788888888889999999999999999999999999999998888864
Q ss_pred hhcccCCCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecccccCccccccccchhhhhhhC
Q 014857 228 HEREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGLGVAAVGIDWSTISSYL 307 (417)
Q Consensus 228 H~~~~~~~~~isr~rfF~~~f~~~F~y~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfGg~~GLGl~p~tfDWn~I~~~~ 307 (417)
.+. + +.++.|.-+..++.+++|.++++ +.... +..-.|.. .|.+..-+++||+- .+.
T Consensus 138 ~~g--~---~~~~~~~l~~g~~~s~~~~~~~~--~~~~~-~~~~~~~~-------------~g~~~~~~~~~~Sp--alv 194 (591)
T TIGR00733 138 DKA--R---NGTGAKPIAYGGILASIYAFLGS--LRVWS-GTLSAAKL-------------VGRRALYFGSDLSL--ALI 194 (591)
T ss_pred ccc--c---chhhHHHHHHHHHHHHHHHHHHH--hccCC-chHHHHHh-------------cCCcceEEEecccH--HHH
Confidence 221 1 12456777778889999988843 22221 11112221 11122224678885 367
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhhhhhc
Q 014857 308 GSPLASPWFATANVAAGFVLVMYVLTPLCYWL 339 (417)
Q Consensus 308 ~sPL~~P~~a~~N~~~G~vl~~~ii~p~lyy~ 339 (417)
|.-+.++.-..+..++|.++.-.++.|.+...
T Consensus 195 G~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~ 226 (591)
T TIGR00733 195 GVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAK 226 (591)
T ss_pred cCceeeChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999999777788877654
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=87.35 E-value=2.5 Score=46.50 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=110.7
Q ss_pred CCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhccCCceeecCCCceeeecCCCCCcc
Q 014857 67 TCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVK 146 (417)
Q Consensus 67 p~~p~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~yplG~~~a~~lP~~~~~~~~~~~f~LNPGPFniK 146 (417)
-++|-.|+|..++|+..+++..+-|..+-+|.---..+++-+-+++ |+- ++- | .++|+-
T Consensus 10 ~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVIS------mav-------lk~----~----~~~sil 68 (624)
T COG1297 10 AFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVIS------MAV-------LKA----F----KGSSIL 68 (624)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHH------HHH-------HHH----h----Cccchh
Confidence 3689999999999999999999999999999776666677666666 221 110 1 278999
Q ss_pred cceeeeeecccCCcchh-HHHHHHHHH-HHhcccchHHHHHHHHHHHhhhhhhhhhhcccceecCCCccCCchhHHHHHH
Q 014857 147 EHVLITIFANSGAGSVY-AIHIVTVVK-VFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLF 224 (417)
Q Consensus 147 EH~litIma~~a~~~ay-a~~ii~~q~-lfy~~~~~~~~~ill~lStQliGyGlAGl~R~~LVyP~~miWP~~L~~vaL~ 224 (417)
|+-++--||+++.+.+- .+.++.... +=|.+++.+.--......--++|-=+.==+||-+|-+++.=||.--...-++
T Consensus 69 ENNmVQT~ASAagtlsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL 148 (624)
T COG1297 69 ENNMVQTQASAAGTLSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVL 148 (624)
T ss_pred hhHHHHHHHhhhccccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHH
Confidence 99999888887765444 334443332 3344665544333322222333333333469999999999999999999999
Q ss_pred HHhhhcccCCCCCcccchhhHHHHHHHHHHHhhhh
Q 014857 225 RALHEREKRASGGVTRTQFFMMGFVCSFAYYVFPG 259 (417)
Q Consensus 225 ~aLH~~~~~~~~~isr~rfF~~~f~~~F~y~~~P~ 259 (417)
++...++... |-.|-=.+......+|-++-+
T Consensus 149 ~~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~ 179 (624)
T COG1297 149 KAGNQREGDA----SGIKLIALGGALAALYSLLAS 179 (624)
T ss_pred HhcCCCCCCc----ccchhhhhhhHHHHHHHHHhc
Confidence 9987433221 223333444555555655544
No 7
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=45.63 E-value=23 Score=24.36 Aligned_cols=19 Identities=37% Similarity=0.810 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 014857 76 MWVLGTLSCVLLSFLNQFF 94 (417)
Q Consensus 76 ~~~lG~~~~~~ga~inq~F 94 (417)
+|++|+.+++..+.+|.+-
T Consensus 5 aWilG~~lA~~~~v~~a~w 23 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAMW 23 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998754
No 8
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=44.41 E-value=25 Score=23.80 Aligned_cols=18 Identities=33% Similarity=0.759 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014857 76 MWVLGTLSCVLLSFLNQF 93 (417)
Q Consensus 76 ~~~lG~~~~~~ga~inq~ 93 (417)
+|++|+.+++..+.+|.+
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999999875
No 9
>PRK14749 hypothetical protein; Provisional
Probab=41.65 E-value=29 Score=23.82 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 014857 76 MWVLGTLSCVLLSFLNQFF 94 (417)
Q Consensus 76 ~~~lG~~~~~~ga~inq~F 94 (417)
+|++|+.+++..+.+|-+.
T Consensus 5 aWiLG~~lAc~f~ilna~w 23 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLVW 23 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998653
No 10
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=26.38 E-value=57 Score=28.15 Aligned_cols=17 Identities=29% Similarity=0.862 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHh
Q 014857 74 FRMWVLGTLSCVLLSFL 90 (417)
Q Consensus 74 fR~~~lG~~~~~~ga~i 90 (417)
+|||++|++=+++|+.+
T Consensus 72 ~KmwilGlvgTi~gsli 88 (98)
T PF11166_consen 72 IKMWILGLVGTIFGSLI 88 (98)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999888655
No 11
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.12 E-value=87 Score=22.96 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=20.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcC
Q 014857 390 FFAT-TYGLGFAALTATIVHVALFHG 414 (417)
Q Consensus 390 ~~~l-~y~~~fA~~ta~i~h~~L~h~ 414 (417)
.|++ +|++++.++...+++...-++
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~~~~~~r 30 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVWSLRRRR 30 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 899999999999999887654
No 12
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=24.87 E-value=81 Score=23.08 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 014857 390 FFAT-TYGLGFAALTATIVHVALFHGS 415 (417)
Q Consensus 390 ~~~l-~y~~~fA~~ta~i~h~~L~h~~ 415 (417)
.|++ +||+++.++...+.+...-+++
T Consensus 6 ~yVW~sYg~t~l~l~~li~~~~~~~r~ 32 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLILWSLLDRRR 32 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 8999999999999988876653
No 13
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=24.66 E-value=79 Score=22.52 Aligned_cols=19 Identities=26% Similarity=0.746 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 014857 76 MWVLGTLSCVLLSFLNQFF 94 (417)
Q Consensus 76 ~~~lG~~~~~~ga~inq~F 94 (417)
+|++|+.+++--+.+|.+-
T Consensus 5 aWiLG~lLAcAFgiinAlw 23 (37)
T COG4890 5 AWILGLLLACAFGIINALW 23 (37)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999988888654
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.88 E-value=63 Score=36.69 Aligned_cols=60 Identities=13% Similarity=0.404 Sum_probs=42.2
Q ss_pred CccCCchhHHHHHHHHhhhcccCCCCCcccchhhHHHHHH---HHHHHhhhh-HHHHhhhhhhhhhhhcCC
Q 014857 211 AMWWPANLVQVSLFRALHEREKRASGGVTRTQFFMMGFVC---SFAYYVFPG-YLLEMLTSLSWICWIFPK 277 (417)
Q Consensus 211 ~miWP~~L~~vaL~~aLH~~~~~~~~~isr~rfF~~~f~~---~F~y~~~P~-yifp~Ls~fs~~cwi~P~ 277 (417)
+.+||..|-..+..++++-+.-. +..|++|..+ ++||.+||. |+|=+-|..-|+-.+...
T Consensus 52 e~~~p~wl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~~~~ 115 (697)
T PF09726_consen 52 EYLWPFWLLLRSVYDSFKYQGLA-------FSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYVWHT 115 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence 56799999999999888776322 3334443332 578999995 667777777888877764
No 15
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.47 E-value=42 Score=35.43 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=10.3
Q ss_pred cccchhhhccccCChhHh
Q 014857 39 SEITEAVVEEEENSPVKQ 56 (417)
Q Consensus 39 ~~~~~~~~~~~~~SPy~e 56 (417)
....|+.+.+.++|||+|
T Consensus 422 ~~~~p~~~s~~~~s~~~~ 439 (452)
T KOG3817|consen 422 RNSEPEPESESDDSEEEE 439 (452)
T ss_pred hcCCCCCcccccCchhhh
Confidence 334444445556777776
Done!