Query 014857
Match_columns 417
No_of_seqs 130 out of 690
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 17.0 2.1E+02 0.0073 21.1 4.7 41 308-349 2-43 (54)
2 2v2f_A Penicillin binding prot 10.7 83 0.0028 19.1 0.8 12 350-361 5-16 (26)
3 2knc_A Integrin alpha-IIB; tra 9.0 4.3E+02 0.015 19.4 4.3 40 310-350 7-47 (54)
4 2jsh_A Appetite-regulating hor 6.9 74 0.0025 20.3 -0.6 13 373-385 10-22 (26)
5 2fnf_X Putative RAS effector N 6.9 1.3E+02 0.0045 22.9 0.7 18 55-72 2-19 (72)
6 3pm2_A Odorant binding protein 5.4 1.4E+02 0.0048 26.1 0.1 22 361-383 60-81 (173)
7 1wrg_A LH-1, light-harvesting 5.0 7.1E+02 0.024 18.3 3.7 14 403-416 33-46 (55)
8 1lgh_A LH II, B800/850, light 4.7 8.2E+02 0.028 18.1 3.9 24 389-412 15-38 (56)
9 1h8a_C AMV V-MYB, MYB transfor 4.7 1.8E+02 0.006 24.0 0.2 31 120-150 2-37 (128)
10 1nkz_B Light-harvesting protei 4.2 7.6E+02 0.026 17.2 3.1 17 398-415 21-37 (41)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=16.97 E-value=2.1e+02 Score=21.15 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCCcccHHHHHHH-HHHHHHHHHHHhhhhhhccccCCccccC
Q 014857 308 GSPLASPWFATANV-AAGFVLVMYVLTPLCYWLNIYNAKTFPI 349 (417)
Q Consensus 308 ~sPL~~P~~a~~N~-~~G~vl~~~ii~p~lyy~N~w~s~~~Pi 349 (417)
|.|--+|+|.++-. .+|.++ .-+++.++|--+.+.-++-+.
T Consensus 2 ~~~~~vp~WiIi~svl~GLLL-L~Lii~~LwK~GFFKR~~~~~ 43 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLL-LMLLILALWKIGFFKRPLKKK 43 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTSCCSCC
T ss_pred CCCccCchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCCcch
Confidence 45667899986544 555555 444555888777776666443
No 2
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=10.66 E-value=83 Score=19.09 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=9.5
Q ss_pred cchhccccCCce
Q 014857 350 FSDQLFTTTGRE 361 (417)
Q Consensus 350 ~S~~lfd~~G~~ 361 (417)
.++.+||++|+.
T Consensus 5 ~ss~IYD~~g~~ 16 (26)
T 2v2f_A 5 TSSKIYDNKNQL 16 (26)
T ss_pred CCCEEEeCCCCE
Confidence 567889998875
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.98 E-value=4.3e+02 Score=19.40 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCcccHHHHHHH-HHHHHHHHHHHhhhhhhccccCCccccCc
Q 014857 310 PLASPWFATANV-AAGFVLVMYVLTPLCYWLNIYNAKTFPIF 350 (417)
Q Consensus 310 PL~~P~~a~~N~-~~G~vl~~~ii~p~lyy~N~w~s~~~Pi~ 350 (417)
+--+|+|-++-. .+|.++ .-+++.++|--+.+.-++-|..
T Consensus 7 ~~~vp~wiIi~svl~GLll-L~li~~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLL-LTILVLAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTCCSCC
T ss_pred CCCcchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCCCCcc
Confidence 445899986544 555555 4445568888888877776654
No 4
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=6.94 E-value=74 Score=20.34 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=11.0
Q ss_pred ccCHHHHHhcCCC
Q 014857 373 HIDIAAYQREGPL 385 (417)
Q Consensus 373 ~ld~~aY~~ysp~ 385 (417)
++-++-|++||+.
T Consensus 10 ~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 10 KLSGAQYQQHGRA 22 (26)
T ss_dssp GGHHHHCSCSSSC
T ss_pred EecHHHHHHHhHH
Confidence 6778899999985
No 5
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=6.92 E-value=1.3e+02 Score=22.86 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=4.2
Q ss_pred HhHhhccCCCCCCCCCcc
Q 014857 55 KQVALTVSTEDDTCLPVL 72 (417)
Q Consensus 55 ~eVra~v~~~DDp~~p~~ 72 (417)
++||.+.+..+||+++..
T Consensus 2 ~~~~~~~~~~~dp~~~~~ 19 (72)
T 2fnf_X 2 RDVRSIFEQPQDPRVLAE 19 (72)
T ss_dssp ------------CCCCGG
T ss_pred cchhhhccCCCCcccccc
Confidence 579999999999987654
No 6
>3pm2_A Odorant binding protein (AGAP007287-PA); alpha helical protein, odorant MOLE antennae, transport protein; 1.80A {Anopheles gambiae}
Probab=5.38 E-value=1.4e+02 Score=26.11 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=18.1
Q ss_pred eeecceeeCCCCccCHHHHHhcC
Q 014857 361 EYNITAIIDSNFHIDIAAYQREG 383 (417)
Q Consensus 361 ~Ynvs~Il~~d~~ld~~aY~~ys 383 (417)
.||-+.+++ |++||.++.+++-
T Consensus 60 i~~~~g~l~-~g~ld~~~~~~~l 81 (173)
T 3pm2_A 60 VMNSTSLYS-NGKIDREALTKLY 81 (173)
T ss_dssp HHHHTTCEE-TTEECHHHHHHHH
T ss_pred hHHHhCCcc-CCcccHHHHHHHH
Confidence 678888898 7799999988753
No 7
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=4.98 E-value=7.1e+02 Score=18.32 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCC
Q 014857 403 TATIVHVALFHGSW 416 (417)
Q Consensus 403 ta~i~h~~L~h~~~ 416 (417)
-|++.|++.|.++-
T Consensus 33 iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 33 VAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHhcc
Confidence 48999999998873
No 8
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=4.74 E-value=8.2e+02 Score=18.08 Aligned_cols=24 Identities=21% Similarity=-0.020 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 014857 389 IFFATTYGLGFAALTATIVHVALF 412 (417)
Q Consensus 389 ~~~~l~y~~~fA~~ta~i~h~~L~ 412 (417)
+.-.+--.++|.++.|.++|.+|-
T Consensus 15 P~~~L~~l~~~v~vlAllIH~~lL 38 (56)
T 1lgh_A 15 PSTWLPVIWIVATVVAIAVHAAVL 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888899999999874
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=4.65 E-value=1.8e+02 Score=24.03 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=9.8
Q ss_pred hhccCCcee-ecCCCceeeecC----CCCCccccee
Q 014857 120 AAKLTDRVF-FKSTPLEFTLNP----GPFNVKEHVL 150 (417)
Q Consensus 120 a~~lP~~~~-~~~~~~~f~LNP----GPFniKEH~l 150 (417)
|+.||.|.- --..+|.-.||| ||||..|...
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~ 37 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQR 37 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHH
Confidence 566787664 112356556777 7999999753
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=4.20 E-value=7.6e+02 Score=17.16 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 014857 398 GFAALTATIVHVALFHGS 415 (417)
Q Consensus 398 ~fA~~ta~i~h~~L~h~~ 415 (417)
.|.++ |++.|++.|-+|
T Consensus 21 ~F~~i-A~vAH~l~w~wr 37 (41)
T 1nkz_B 21 VFLGL-ALVAHFLAFSAT 37 (41)
T ss_dssp HHHHH-HHHHHHHHHHHS
T ss_pred HHHHH-HHHHHHHHHHhC
Confidence 34444 889999988765
Done!