Query 014859
Match_columns 417
No_of_seqs 199 out of 1770
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:12:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 3.9E-46 8.4E-51 345.3 25.4 311 38-410 10-362 (370)
2 KOG2058 Ypt/Rab GTPase activat 100.0 1.5E-42 3.3E-47 343.1 19.3 254 36-394 122-385 (436)
3 KOG1092 Ypt/Rab-specific GTPas 100.0 7.9E-41 1.7E-45 320.9 21.7 273 50-412 176-477 (484)
4 smart00164 TBC Domain in Tre-2 100.0 5.4E-39 1.2E-43 294.5 17.7 195 60-311 1-198 (199)
5 KOG2224 Uncharacterized conser 100.0 7.1E-38 1.5E-42 300.2 19.9 318 14-413 380-734 (781)
6 KOG2223 Uncharacterized conser 100.0 1.1E-35 2.4E-40 285.4 21.5 264 52-410 290-557 (586)
7 KOG2197 Ypt/Rab-specific GTPas 100.0 1.2E-34 2.5E-39 295.4 18.2 341 30-415 43-448 (488)
8 PF00566 RabGAP-TBC: Rab-GTPas 100.0 2.6E-33 5.5E-38 259.1 23.5 168 161-375 46-214 (214)
9 COG5210 GTPase-activating prot 100.0 6.1E-34 1.3E-38 295.0 21.1 240 36-377 182-429 (496)
10 KOG1093 Predicted protein kina 100.0 2.2E-31 4.8E-36 263.8 18.0 202 161-410 390-592 (725)
11 KOG2222 Uncharacterized conser 100.0 8.5E-31 1.8E-35 254.1 16.5 251 51-406 158-416 (848)
12 KOG1091 Ypt/Rab-specific GTPas 100.0 4.6E-29 1E-33 247.4 19.0 281 66-409 27-363 (625)
13 KOG4347 GTPase-activating prot 100.0 2.5E-28 5.4E-33 246.2 14.5 249 38-392 174-425 (671)
14 KOG4436 Predicted GTPase activ 99.9 2.3E-26 5E-31 235.3 22.1 254 38-395 550-810 (948)
15 KOG2595 Predicted GTPase activ 99.9 2.1E-25 4.6E-30 209.6 14.9 202 162-411 97-303 (395)
16 KOG1102 Rab6 GTPase activator 99.9 1.4E-23 3E-28 210.5 12.8 184 163-396 187-373 (397)
17 KOG2221 PDZ-domain interacting 99.8 2.1E-21 4.5E-26 172.6 3.4 211 15-286 48-267 (267)
18 KOG3636 Uncharacterized conser 99.7 2.1E-17 4.6E-22 160.3 15.5 175 184-408 91-271 (669)
19 KOG4436 Predicted GTPase activ 99.5 5.3E-14 1.2E-18 145.3 13.3 239 55-395 176-425 (948)
20 KOG1648 Uncharacterized conser 99.5 1.2E-14 2.6E-19 142.8 0.7 275 30-406 526-800 (813)
21 KOG2801 Probable Rab-GAPs [Int 98.8 1.2E-07 2.6E-12 88.7 15.8 186 182-413 108-298 (559)
22 PF14961 BROMI: Broad-minded p 97.2 0.012 2.7E-07 65.3 16.8 178 190-414 1088-1283(1296)
23 KOG2224 Uncharacterized conser 80.8 0.58 1.2E-05 46.8 0.4 33 202-234 566-598 (781)
24 KOG2197 Ypt/Rab-specific GTPas 67.4 2.7 5.8E-05 43.9 1.3 76 35-111 148-224 (488)
25 PF10815 ComZ: ComZ; InterPro 40.1 51 0.0011 23.3 3.6 39 256-294 6-44 (56)
26 PF08109 Antimicrobial14: Lact 34.2 29 0.00063 20.7 1.4 16 202-217 3-18 (31)
27 PF08649 DASH_Dad1: DASH compl 27.2 1.4E+02 0.0031 21.6 4.2 49 367-417 3-58 (58)
28 PRK10878 hypothetical protein; 23.1 1.1E+02 0.0024 23.0 3.3 29 250-278 21-49 (72)
29 PF13041 PPR_2: PPR repeat fam 20.4 1.4E+02 0.003 20.0 3.1 26 266-291 24-49 (50)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=3.9e-46 Score=345.35 Aligned_cols=311 Identities=25% Similarity=0.434 Sum_probs=256.8
Q ss_pred HHHHHhhccCC-CccHHHHHHHHHhCCCC--CCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014859 38 RRWHAAFSEDG-HLDIAKVLRRIQRGGIH--PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPII 114 (417)
Q Consensus 38 ~~W~~~l~~~~-~id~~~l~~~l~~~GIP--~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 114 (417)
+..++.++... .+|..+ ++.++..|+| ..+|+.+|+++||++|++.+. |...+.+++..|..+.++.. ..+
T Consensus 10 ~~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~--w~s~La~~R~~Y~q~i~e~v---~ep 83 (370)
T KOG4567|consen 10 KSIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSK--WTSFLAKKRSLYKQFIEEIV---DEP 83 (370)
T ss_pred hhHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhh--hHHHHHHHHHHHHHHHHHhc---cCc
Confidence 35556665543 378877 7788888999 799999999999999999864 67888999999999988743 222
Q ss_pred CCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChh-----------
Q 014859 115 GSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET----------- 183 (417)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~----------- 183 (417)
|. .......++.....++|.+..+++.|+ ...+..+.+.||++||.||.|+..+|+...
T Consensus 84 g~--~~~~~~v~~~D~~~dhPls~~~~sdwn--------~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~ 153 (370)
T KOG4567|consen 84 GK--KDNSKKVDSNDTDEDHPLSLGPTSDWN--------TFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSR 153 (370)
T ss_pred cc--cccccccccCcccccCCCCCCchhhHH--------HHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhH
Confidence 21 111111222224566777766666663 444555788999999999999999887520
Q ss_pred ----------------hHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcC----------CHHHHHHHHHHHHHHhh
Q 014859 184 ----------------NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE----------NEADAFWCFEHTMRRLR 237 (417)
Q Consensus 184 ----------------~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~----------~E~~aF~~f~~l~~~~~ 237 (417)
......|||..||..||.|||+||||+|+||+++|+. .|+|||+||+.||..++
T Consensus 154 ~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseir 233 (370)
T KOG4567|consen 154 RRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIR 233 (370)
T ss_pred hhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHH
Confidence 1233578999999999999999999999999999984 38999999999999999
Q ss_pred hcccCC--CCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCc
Q 014859 238 ENFRTN--TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNI 315 (417)
Q Consensus 238 ~~~~~~--~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~ 315 (417)
++|..+ ...-|++..+..+..+|+.+|-+||.||++.+|.|..|+++|+++|++.+||++++++|||.+++....
T Consensus 234 Dnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r--- 310 (370)
T KOG4567|consen 234 DNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR--- 310 (370)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh---
Confidence 999764 445588888999999999999999999999999999999999999999999999999999999987543
Q ss_pred hhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC
Q 014859 316 FSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL 395 (417)
Q Consensus 316 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~ 395 (417)
.+|++++|+|||...|+.||+. ||+..+++|++.+ ..
T Consensus 311 ----------------------------------------fd~Ll~iCcsmlil~Re~il~~--DF~~nmkLLQ~yp-~t 347 (370)
T KOG4567|consen 311 ----------------------------------------FDFLLYICCSMLILVRERILEG--DFTVNMKLLQNYP-TT 347 (370)
T ss_pred ----------------------------------------hHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHhcCC-CC
Confidence 3489999999999999999994 9999999999999 88
Q ss_pred CHHHHHHHHHHHHHH
Q 014859 396 DAKKACNEALKIQKK 410 (417)
Q Consensus 396 d~~~il~~A~~l~~~ 410 (417)
|+..+++.|..|..+
T Consensus 348 di~~~l~~A~~Lr~~ 362 (370)
T KOG4567|consen 348 DISKMLAVADSLRDK 362 (370)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998843
No 2
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=343.06 Aligned_cols=254 Identities=24% Similarity=0.416 Sum_probs=213.8
Q ss_pred CHHHHHHhhccC-------CCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 014859 36 SARRWHAAFSED-------GHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQ 108 (417)
Q Consensus 36 ~~~~W~~~l~~~-------~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~ 108 (417)
+..+|...+..+ ..+.....++.++|+|||+++|+.||..+.|... ....+..|+.+...--
T Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~-----------~~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 122 RQLRWELELQSNIKLHSPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARR-----------QLNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHHhhhhhcccccccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchh-----------hccCchhHHHHHhcCC
Confidence 356788777663 1222233488999999999999999999999311 1111567777766310
Q ss_pred hhccccCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCC-cCCCChh--hH
Q 014859 109 NIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSL-VFYESET--NQ 185 (417)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~-~~f~~~~--~~ 185 (417)
. +. ..+.++|+.|+.||||++ +.|..+. ++
T Consensus 191 ---------------------------~----------------~~----~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~ 223 (436)
T KOG2058|consen 191 ---------------------------E----------------KK----SPVVKQIKLDLPRTFPDNFKGFDSEDSDGR 223 (436)
T ss_pred ---------------------------C----------------cc----chHHHHHHhccccccCCCcccCCCCCchHH
Confidence 0 00 035789999999999999 7887764 38
Q ss_pred HHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCH
Q 014859 186 AKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDP 265 (417)
Q Consensus 186 ~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P 265 (417)
..|+|||.||+.+||.||||||||++||++|+++++|++|||||+.+++++.+.| +.+++.|.+....+|+.+|+..+|
T Consensus 224 ~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Y-yt~nL~g~qvDQ~VL~~llre~lP 302 (436)
T KOG2058|consen 224 QTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRY-YTPNLIGSQVDQKVLRELLREKLP 302 (436)
T ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhh-cCchhhhhhccHHHHHHHHHHHCH
Confidence 9999999999999999999999999999999999889999999999999998885 478899999999999999999999
Q ss_pred HHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhh
Q 014859 266 KLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERK 345 (417)
Q Consensus 266 ~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (417)
+|+.||..++++..+++++||+|+|+..+|.+.++||||++|.+|.+
T Consensus 303 kl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk--------------------------------- 349 (436)
T KOG2058|consen 303 KLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSK--------------------------------- 349 (436)
T ss_pred HHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccH---------------------------------
Confidence 99999999999999999999999999999999999999999999865
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCC
Q 014859 346 NVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGN 394 (417)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~ 394 (417)
+++.+++|++..+++.|++ +.+..++++++..+...
T Consensus 350 ------------vlfr~Alai~k~~ee~il~-~~~~~~i~~~~~~~~~~ 385 (436)
T KOG2058|consen 350 ------------VLFRVALAILKKHEEEILK-EDSSKEILRVLPDLTKR 385 (436)
T ss_pred ------------HHHHHHHHHHHHhHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 3444899999999999999 57999999999877643
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-41 Score=320.93 Aligned_cols=273 Identities=24% Similarity=0.474 Sum_probs=241.4
Q ss_pred ccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCC
Q 014859 50 LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDG 129 (417)
Q Consensus 50 id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (417)
+|.+ ++|.++++|||..+|+.+|++++|++|.+.. -+....+.++..|.+++.++.......
T Consensus 176 id~~-~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~~--------------- 237 (484)
T KOG1092|consen 176 IDLE-KLRKLCWNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTNG--------------- 237 (484)
T ss_pred ccHH-HHHHHccCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCCc---------------
Confidence 4555 4999999999999999999999999999984 466788999999999999886432110
Q ss_pred CccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHHHHHHHHHHhcCCCCcCCChh
Q 014859 130 QSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMN 209 (417)
Q Consensus 130 ~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~ 209 (417)
+ ...+..+||..|++|+.|..++|..+..++.+.|||+.++.++|..||+||.+
T Consensus 238 -----~---------------------~~~d~~rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgin 291 (484)
T KOG1092|consen 238 -----D---------------------EDQDTWRQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGIN 291 (484)
T ss_pred -----c---------------------ccCccccccccCCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccce
Confidence 0 00135789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-------------------------CHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHC
Q 014859 210 DICSPMIVLLE-------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTID 264 (417)
Q Consensus 210 ~Iaa~ll~~~~-------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~ 264 (417)
+++.+++.++. -|++||||+..|+..+.++|.+.. +|++.....++.|++..|
T Consensus 292 dlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfaQ--pGIq~kV~~L~eLv~RID 369 (484)
T KOG1092|consen 292 DLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFAQ--PGIQRKVKNLKELVQRID 369 (484)
T ss_pred eeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhcC--hhHHHHHHHHHHHHHHhc
Confidence 99999999872 289999999999999999998764 599999999999999999
Q ss_pred HHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhh
Q 014859 265 PKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFER 344 (417)
Q Consensus 265 P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (417)
+.|++||+++|++-.+|++||+-|||.|++|+..++|+||.+++++...
T Consensus 370 ~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf------------------------------- 418 (484)
T KOG1092|consen 370 EPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGF------------------------------- 418 (484)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccch-------------------------------
Confidence 9999999999999999999999999999999999999999999986654
Q ss_pred hhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC----CHHHHHHHHHHHHHHHH
Q 014859 345 KNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL----DAKKACNEALKIQKKYL 412 (417)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~----d~~~il~~A~~l~~~~~ 412 (417)
..|++|+|+|.|..-+++|++ +||.+++.||++++..- +++.++..|..+..-|.
T Consensus 419 -----------~~FhvYvcAAFL~kW~~eL~e--~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~ 477 (484)
T KOG1092|consen 419 -----------NEFHVYVCAAFLLKWSSELME--NDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFS 477 (484)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 457899999999999999996 59999999999999433 88889999988776653
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=5.4e-39 Score=294.53 Aligned_cols=195 Identities=33% Similarity=0.622 Sum_probs=171.1
Q ss_pred HhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCccCCCCccc
Q 014859 60 QRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDS 139 (417)
Q Consensus 60 ~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 139 (417)
+++|||+.+|+.||+.++|+.+...+ ..+..|.++.++....
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~----------------------------- 42 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPK----------------------------- 42 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCC-----------------------------
Confidence 36899999999999999998765432 1357888887764210
Q ss_pred ccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh--hhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHH
Q 014859 140 LDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIV 217 (417)
Q Consensus 140 ~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~ 217 (417)
+. ...++|++||.||++++++|+.. ..++.|.|||.+|+.++|++||||||++||++|++
T Consensus 43 ------------~~------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~ 104 (199)
T smart00164 43 ------------DK------SIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLL 104 (199)
T ss_pred ------------Ch------hhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHH
Confidence 00 13579999999999999999864 58999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHh-CCCCccchHHHHHHHhhcccCCh
Q 014859 218 LLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLED-LDGGEYLFAFRMLMVLFRREFSF 296 (417)
Q Consensus 218 ~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~-~~i~~~~f~~~W~~tlF~~~l~~ 296 (417)
++.+|++|||||+++|++....++ .++++++...+..++.+|+.++|+||+||.+ +|+++.+|+.+|++|+|++++|+
T Consensus 105 ~~~~e~~af~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 105 VMPDEEDAFWCLVKLMERYGPNFY-LPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred hcCCHHHHHHHHHHHHHHhCcccC-CCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 998899999999999999877664 5667789999999999999999999999996 99999999999999999999999
Q ss_pred hhHHHHHHHHhhccc
Q 014859 297 VDALYLWELMWAMEY 311 (417)
Q Consensus 297 ~~v~riWD~~l~~~~ 311 (417)
+.++||||.++++|.
T Consensus 184 ~~~~riwD~~l~eG~ 198 (199)
T smart00164 184 EIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999874
No 5
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.1e-38 Score=300.16 Aligned_cols=318 Identities=26% Similarity=0.515 Sum_probs=264.3
Q ss_pred CCCcccCCCCCCCCCC----CCCCCCCHHHHHH-hhccCCCc-cHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHH
Q 014859 14 LDSYYPIRPECQADVP----KAGKTLSARRWHA-AFSEDGHL-DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE 87 (417)
Q Consensus 14 ~~~~~~~~~~~~~~~~----~~~~~l~~~~W~~-~l~~~~~i-d~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~ 87 (417)
.-.|-..||+....+. ...++++...|.. .+++.|.+ +.-++++.+++|||..++|+.||++||.+|...+|.+
T Consensus 380 yr~f~i~rpel~~se~hpde~~~kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~e 459 (781)
T KOG2224|consen 380 YRHFMICRPELKKSEMHPDEGDVKKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFE 459 (781)
T ss_pred hhheeeecCCCCccccCCccchhhhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchh
Confidence 3456677888776665 4445777888887 67777888 4446677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhccccCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHh
Q 014859 88 ERNQIRQQRRQQYAAWKTECQ-NIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIG 166 (417)
Q Consensus 88 ~~~~~~~~~~~~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~ 166 (417)
+|......++++|++...+-. ++.| .+...-|+.+.-.++
T Consensus 460 dr~al~~~krkey~eiqqkrlysmsp---------------------------------------eeh~~fwknvq~tvd 500 (781)
T KOG2224|consen 460 DRAALMDIKRKEYEEIQQKRLYSMSP---------------------------------------EEHIAFWKNVQFTVD 500 (781)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCH---------------------------------------HHHHHHHhheEEEEe
Confidence 999999999999998877643 2221 345556666667789
Q ss_pred hcccCCCCCCcCCCCh--hhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhh-------
Q 014859 167 LDVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLR------- 237 (417)
Q Consensus 167 ~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~------- 237 (417)
|||.||.+++++|..+ .+.+.|+|||..|+.|||.+||.|||++++||.|.-..+|.++||||+.||..+.
T Consensus 501 kdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapil 580 (781)
T KOG2224|consen 501 KDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPIL 580 (781)
T ss_pred cceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHH
Confidence 9999999999999876 5699999999999999999999988888877777766666666666666665321
Q ss_pred -------------------hcccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCcc--chHHHHHHHhhcccCCh
Q 014859 238 -------------------ENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEY--LFAFRMLMVLFRREFSF 296 (417)
Q Consensus 238 -------------------~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~--~f~~~W~~tlF~~~l~~ 296 (417)
..|...+....+...+..++.|++...|..|+||.++|-+.. +||.+|++.+|.|+||-
T Consensus 581 aevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~e 660 (781)
T KOG2224|consen 581 AEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPE 660 (781)
T ss_pred HhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccH
Confidence 345556666678888999999999999999999999886543 79999999999999999
Q ss_pred hhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 014859 297 VDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLR 376 (417)
Q Consensus 297 ~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~ 376 (417)
..++|||+..|++ +-. ..|++|+|+||+-..-+..+.
T Consensus 661 a~airiweacwa~-y~t------------------------------------------dyfhlficlaiiaiy~ddvi~ 697 (781)
T KOG2224|consen 661 AEAIRIWEACWAH-YLT------------------------------------------DYFHLFICLAIIAIYADDVIA 697 (781)
T ss_pred HHHHHHHHHHHHH-hhH------------------------------------------HHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999986 221 347899999999999999998
Q ss_pred hcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHH
Q 014859 377 EAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLS 413 (417)
Q Consensus 377 ~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~~~~~ 413 (417)
+..--|+++..+.++.-.+|-+-|+++|..+..||+-
T Consensus 698 q~l~~demllhf~nlam~mdgelilrkar~ll~qfr~ 734 (781)
T KOG2224|consen 698 QNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQFRL 734 (781)
T ss_pred hhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHHHhh
Confidence 7888999999999999999999999999999999974
No 6
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=285.43 Aligned_cols=264 Identities=22% Similarity=0.350 Sum_probs=213.4
Q ss_pred HHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCccccccccccCCC
Q 014859 52 IAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQ-YAAWKTECQNIVPIIGSGKFITAAIVTDDGQ 130 (417)
Q Consensus 52 ~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~-Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (417)
..+-++.++|.|||+.+|+.||.+..|. ..+.|.+-....+....+. ..++-++..
T Consensus 290 ~SrR~relWwQGiP~~VRGkvW~laIGN-el~it~elfd~~la~Aker~ak~~aeq~~---------------------- 346 (586)
T KOG2223|consen 290 KSRRVRELWWQGIPPSVRGKVWSLAIGN-ELNITYELFDIALARAKEREAKSLAEQMS---------------------- 346 (586)
T ss_pred hhHHHHHHHHccCChhhcchhhHhhhCc-ccccCHHHHHHHHHHHHHHHHHHHHhhcc----------------------
Confidence 3345889999999999999999999993 4555544333222222221 122211100
Q ss_pred ccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh-hhHHHHHHHHHHHHHhcCCCCcCCChh
Q 014859 131 SLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDVLAIYSWVDNDIGYVQGMN 209 (417)
Q Consensus 131 ~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~-~~~~~L~rIL~~y~~~~p~igY~QGm~ 209 (417)
+...+......+|+.|+.||||+..+|+.+ +..+.|..+|.+|+.|.|++||+|||.
T Consensus 347 ----------------------~sa~~re~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmS 404 (586)
T KOG2223|consen 347 ----------------------NSAADREASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMS 404 (586)
T ss_pred ----------------------cchhhhhcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchH
Confidence 000111235678999999999999999875 679999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh--hcccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHH
Q 014859 210 DICSPMIVLLENEADAFWCFEHTMRRLR--ENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLM 287 (417)
Q Consensus 210 ~Iaa~ll~~~~~E~~aF~~f~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~ 287 (417)
+|+|+|++.+ ++++||.||.+|+++-. ..|..+ .+.+..++..|+..|++..|+|+.||.++++.|.+|.+.|+.
T Consensus 405 FIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~d--~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwif 481 (586)
T KOG2223|consen 405 FIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRVD--HSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIF 481 (586)
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhcC--cHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHH
Confidence 9999998888 88999999999999843 334433 347889999999999999999999999999999999999999
Q ss_pred HhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHH
Q 014859 288 VLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVL 367 (417)
Q Consensus 288 tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail 367 (417)
+||+..+|++..+||||+|+-+|.. |++-.+++||
T Consensus 482 tlyskslpldlacRIwDvy~rdgee---------------------------------------------Flfr~~lgIl 516 (586)
T KOG2223|consen 482 TLYSKSLPLDLACRIWDVYCRDGEE---------------------------------------------FLFRTALGIL 516 (586)
T ss_pred HHHhccCChHHhhhhhheeeecchH---------------------------------------------HHHHHHHHHH
Confidence 9999999999999999999988743 7777889999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 014859 368 ETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKK 410 (417)
Q Consensus 368 ~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~~ 410 (417)
...+++++. +|+..+.++|..++.++..+++...-..+.-+
T Consensus 517 klyepkLl~--mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~ 557 (586)
T KOG2223|consen 517 KLYEPKLLV--MDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQ 557 (586)
T ss_pred HHccchHhh--hhHHHHHHHHHhCcccCCHHHHHHHHHHHhhh
Confidence 999999998 59999999999999999988887665555444
No 7
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-34 Score=295.40 Aligned_cols=341 Identities=41% Similarity=0.753 Sum_probs=281.5
Q ss_pred CCCCCCCHHHHHHhhccCCCcc-HHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 014859 30 KAGKTLSARRWHAAFSEDGHLD-IAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQ 108 (417)
Q Consensus 30 ~~~~~l~~~~W~~~l~~~~~id-~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~ 108 (417)
+.+..++.++|...+.+.+... ..++++.+..+||++.+|+.||.+|+|+|+.+.+.+++..+....+.+|..|...+.
T Consensus 43 ~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~ 122 (488)
T KOG2197|consen 43 KPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQ 122 (488)
T ss_pred ccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcc
Confidence 7788889999999999988864 778889999999999999999999999999999999999999999999999999998
Q ss_pred hhccccCCC-ccccccccccCCCcc-------------CCCC------------------cc------------------
Q 014859 109 NIVPIIGSG-KFITAAIVTDDGQSL-------------QDSN------------------RD------------------ 138 (417)
Q Consensus 109 ~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~p~------------------~~------------------ 138 (417)
.+....+.+ .+.......+..+|. .... +.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (488)
T KOG2197|consen 123 MMKSTVGNGLSYVVSSVVSDNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRE 202 (488)
T ss_pred hhhhhhccccceeeeEEeecCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCccccccc
Confidence 887766555 222222222222220 0000 00
Q ss_pred ------------cccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhh--HHHHHHHHHHHHHhcCCCCc
Q 014859 139 ------------SLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETN--QAKLWDVLAIYSWVDNDIGY 204 (417)
Q Consensus 139 ------------~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~--~~~L~rIL~~y~~~~p~igY 204 (417)
..+..|.......+.....+......|.+||.||.+.+.++....+ ...|..||.+|+.+++++||
T Consensus 203 ~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY 282 (488)
T KOG2197|consen 203 RVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGY 282 (488)
T ss_pred ccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCcccc
Confidence 0001111111111111111223446788999999999999988877 99999999999999999999
Q ss_pred CCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHH
Q 014859 205 VQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFR 284 (417)
Q Consensus 205 ~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~ 284 (417)
||||+++.+|++.++.+|.+|||||+.+|.+.+.+|..+.. +++..+..+..+++..||.||.||++.+.....|+++
T Consensus 283 ~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d~~--~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr 360 (488)
T KOG2197|consen 283 CQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRIDQS--GMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFR 360 (488)
T ss_pred ccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccccc--cHHHHhhhhhhhccccCHHHHhhccccCCCccceeee
Confidence 99999999999999999999999999999999999986654 8999999999999999999999999999999999999
Q ss_pred HHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHH
Q 014859 285 MLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVA 364 (417)
Q Consensus 285 W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (417)
|++.+|.++|..++++++|+++++.-+.+ .|+++++.
T Consensus 361 ~l~v~frrEf~~ed~l~LWEvlw~~~~~~-------------------------------------------~f~~~~~~ 397 (488)
T KOG2197|consen 361 MLLVPFRREFEFEDSLRLWEVLWTDLPSP-------------------------------------------HFHLYVAP 397 (488)
T ss_pred hhhcccccccccccHHHHHHHHHhcCccc-------------------------------------------hHHHHHHH
Confidence 99999999999999999999999976553 38899999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 014859 365 SVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKS 415 (417)
Q Consensus 365 ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~~~~~~~ 415 (417)
|+|...++.|+....+++++++.++.+....|+..++..|..++.++....
T Consensus 398 ~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~~ 448 (488)
T KOG2197|consen 398 AILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQME 448 (488)
T ss_pred hhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHhcc
Confidence 999999999998888999999999999999999999999999988876544
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=2.6e-33 Score=259.07 Aligned_cols=168 Identities=32% Similarity=0.620 Sum_probs=147.7
Q ss_pred HHhHHhhcccCCCCCCcCCCChhhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHH-hhhc
Q 014859 161 GLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR-LREN 239 (417)
Q Consensus 161 ~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~-~~~~ 239 (417)
..++|++|+.||+++...+..+..++.|.+||.+|+.++|++||+|||++|+++++.++.+|++|||||+++|+. ....
T Consensus 46 ~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~ 125 (214)
T PF00566_consen 46 IFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDF 125 (214)
T ss_dssp CHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGG
T ss_pred HHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhccccccc
Confidence 468999999999997788888899999999999999999999999999999999998888999999999999933 4444
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhh
Q 014859 240 FRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLY 319 (417)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~ 319 (417)
|. ++..++...+..++.+++.++|+|++||.+.++++..|+.+|+.|+|++.+|.+.++|||| ++.+|+..
T Consensus 126 ~~--~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~------ 196 (214)
T PF00566_consen 126 FQ--PNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKF------ 196 (214)
T ss_dssp TS--TTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTH------
T ss_pred cc--ccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCc------
Confidence 43 4456799999999999999999999999999999999999999999999999999999999 66666531
Q ss_pred ccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHH
Q 014859 320 ESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLL 375 (417)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il 375 (417)
+++++++|++...|++||
T Consensus 197 --------------------------------------~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 197 --------------------------------------FLFFIALAILKYLRDQIL 214 (214)
T ss_dssp --------------------------------------HHHHHHHHHHHHTHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHhC
Confidence 378899999999999986
No 9
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=294.99 Aligned_cols=240 Identities=29% Similarity=0.504 Sum_probs=199.3
Q ss_pred CHHHHHHhhccCCC-c---cHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014859 36 SARRWHAAFSEDGH-L---DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 111 (417)
Q Consensus 36 ~~~~W~~~l~~~~~-i---d~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (417)
....|.+++..++. . ...+ ++.+.+.|||+.+|+.||..++|+++... .....|..+.+.+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gip~~~r~~vw~~~~~~~~~~~----------~~~~~y~~~~~~~~~~~ 250 (496)
T COG5210 182 ADKLWISYLDPNPLSFLPVQLSK-LRELIRKGIPNELRGDVWEFLLGIGFDLD----------KNPGLYERLLNLHREAK 250 (496)
T ss_pred HHHHHHHHHhcccchhhhhhHHH-HHHHHHhcCChHhhhhhHHHHhccchhhc----------cCchHHHHHHHHHHhcC
Confidence 34567888877655 2 3334 67778889999999999999999876544 24456666666543211
Q ss_pred cccCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHH--HH
Q 014859 112 PIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK--LW 189 (417)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~--L~ 189 (417)
. | . ....++|++||.||++.+..|+....... |+
T Consensus 251 ~----------------------~-----------------~-----~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~ 286 (496)
T COG5210 251 I----------------------P-----------------T-----QEIISQIEKDLSRTFPDNSLFQTEISIRAENLR 286 (496)
T ss_pred C----------------------C-----------------c-----HHHHHHHHccccccccccccccCcccccHHHHH
Confidence 0 0 0 02578999999999999999988766555 99
Q ss_pred HHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHH--hhhcccCCCCchhHHHHHHHHHHHHHHHCHHH
Q 014859 190 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR--LRENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 267 (417)
Q Consensus 190 rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L 267 (417)
|||.+|+.++|++||||||++|+|+|++++..|++|||||+.||.. +...| ..++.|+...+..+..+++..+|+|
T Consensus 287 rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~--~~~~~G~~~~~~~l~~~v~~~~p~l 364 (496)
T COG5210 287 RVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYF--LKNLSGLHRDLKVLDDLVEELDPEL 364 (496)
T ss_pred HHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhc--ccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998799999999999994 34444 4567899999999999999999999
Q ss_pred HHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhh
Q 014859 268 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNV 347 (417)
Q Consensus 268 ~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (417)
|+||...++...+|+++||+|+|++.+|++.++||||++|++|.+
T Consensus 365 ~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~----------------------------------- 409 (496)
T COG5210 365 YEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS----------------------------------- 409 (496)
T ss_pred HHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH-----------------------------------
Confidence 999999999999999999999999999999999999999998864
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 014859 348 KTGLPDKTSALSVFLVASVLETKNKKLLRE 377 (417)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ail~~~r~~il~~ 377 (417)
+.+.+++|++...+.+++..
T Consensus 410 ----------~l~~~~~~~l~~~~~~l~~~ 429 (496)
T COG5210 410 ----------MLFQLALAILKLLRDKLLKL 429 (496)
T ss_pred ----------HHHHHHHHHHHhhhhhhhcc
Confidence 45667788888889998873
No 10
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.97 E-value=2.2e-31 Score=263.82 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=186.0
Q ss_pred HHhHHhhcccCCCCCCcCCCChhhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhc
Q 014859 161 GLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLL-ENEADAFWCFEHTMRRLREN 239 (417)
Q Consensus 161 ~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~-~~E~~aF~~f~~l~~~~~~~ 239 (417)
+.+||+.|++|+.....+.+++.++++|+|+|.+|+..+|..-|.||+..+|+||++.. ++|..||-|+..++-++..+
T Consensus 390 tdrqievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~ 469 (725)
T KOG1093|consen 390 TDRQIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQH 469 (725)
T ss_pred chhhhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999875 67999999999999887655
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhh
Q 014859 240 FRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLY 319 (417)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~ 319 (417)
|+..++..-++..+..|..++..|||+|++||..+|+.+++|+++||+|+|+++||++.++.+||-++..+.+
T Consensus 470 fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~S------- 542 (725)
T KOG1093|consen 470 FFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSS------- 542 (725)
T ss_pred HHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCc-------
Confidence 5444445578899999999999999999999999999999999999999999999999999999999986643
Q ss_pred ccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHH
Q 014859 320 ESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKK 399 (417)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~ 399 (417)
|.+++++|++...|+.+|.. ++.|.+.++.+++ ++|++.
T Consensus 543 --------------------------------------Fplmi~vAil~~lR~~LLa~--nfne~illf~d~p-dldId~ 581 (725)
T KOG1093|consen 543 --------------------------------------FPLMIGVAILIQLRDPLLAC--NFNECILLFSDLP-DLDIDV 581 (725)
T ss_pred --------------------------------------cHHHHHHHHHHHhhhhhhhC--CchhheeeeccCC-cccHHH
Confidence 78999999999999999994 8999999999999 999999
Q ss_pred HHHHHHHHHHH
Q 014859 400 ACNEALKIQKK 410 (417)
Q Consensus 400 il~~A~~l~~~ 410 (417)
++++...+++.
T Consensus 582 ~Ires~~l~e~ 592 (725)
T KOG1093|consen 582 CIRESYHLMET 592 (725)
T ss_pred HHHHHhhhhhC
Confidence 99999998863
No 11
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=8.5e-31 Score=254.07 Aligned_cols=251 Identities=23% Similarity=0.422 Sum_probs=207.8
Q ss_pred cHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCC
Q 014859 51 DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQ 130 (417)
Q Consensus 51 d~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (417)
..+++...+..||||..+|+.+|+.|.|.... .+.....|++.++++..-.
T Consensus 158 ktdk~~~llkeggiphslr~~lw~rlsga~~k----------kk~ae~sy~~ilk~~andk------------------- 208 (848)
T KOG2222|consen 158 KTDKFEELLKEGGIPHSLRAFLWMRLSGALAK----------KKDAETSYEDILKACANDK------------------- 208 (848)
T ss_pred chHHHHHHHHcCCCCcchhHHHHHHhhhhhhh----------hccccccHHHHHHHhcccc-------------------
Confidence 45565566677889999999999999997422 2234456888887763210
Q ss_pred ccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh--hhHHHHHHHHHHHHHhcCCCCcCCCh
Q 014859 131 SLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGM 208 (417)
Q Consensus 131 ~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~y~~~~p~igY~QGm 208 (417)
| .+-.||++|+-|+.|++.+|..+ .+.+.|+|||.+.++..|++||||||
T Consensus 209 ----~------------------------~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~ 260 (848)
T KOG2222|consen 209 ----L------------------------MIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGM 260 (848)
T ss_pred ----c------------------------chhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCc
Confidence 0 24579999999999999999875 67999999999999999999999999
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhh-hcccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHH
Q 014859 209 NDICSPMIVLLENEADAFWCFEHTMRRLR-ENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLM 287 (417)
Q Consensus 209 ~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~ 287 (417)
.-|+|.+|+.+ .|+.|||++..+++.+. ++|+ ..+.-|++..-.+...|+.-+.|.|-+.|.+++++.++....||+
T Consensus 261 gviva~lllf~-~ee~afwmmaaiiedilp~nfy-sqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~l 338 (848)
T KOG2222|consen 261 GVIVACLLLFC-EEENAFWMMAAIIEDILPANFY-SQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFL 338 (848)
T ss_pred cHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhh-hhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHH
Confidence 99999988888 78899999999999965 4454 567789999999999999999999999999999999999999999
Q ss_pred HhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHH-HHHHH
Q 014859 288 VLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVF-LVASV 366 (417)
Q Consensus 288 tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ai 366 (417)
|+|+..+....++||||.||.+|. +.+| +++.|
T Consensus 339 tlf~nv~~~killriwd~~fy~g~----------------------------------------------i~ifql~i~i 372 (848)
T KOG2222|consen 339 TLFANVFHMKILLRIWDFFFYEGG----------------------------------------------INIFQLIIGI 372 (848)
T ss_pred HHHHHHHHHHHHHHHHHhheecCc----------------------------------------------chhHHHHHHH
Confidence 999999999999999999998764 2344 67788
Q ss_pred HHHHHHHHHH---hcCChHHHHHHHhhhcCCC-CHHHHHHHHHH
Q 014859 367 LETKNKKLLR---EAKGLDDVVKILADITGNL-DAKKACNEALK 406 (417)
Q Consensus 367 l~~~r~~il~---~~~~~~~i~~~l~~~~~~~-d~~~il~~A~~ 406 (417)
|....+.|.+ ...+..+|...+.++|... |++.++..|..
T Consensus 373 lkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~ 416 (848)
T KOG2222|consen 373 LKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGE 416 (848)
T ss_pred HHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhh
Confidence 8877776653 2256778888888888665 88888888754
No 12
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-29 Score=247.41 Aligned_cols=281 Identities=22% Similarity=0.329 Sum_probs=214.9
Q ss_pred CCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCccCCCCcccccCCCC
Q 014859 66 PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWH 145 (417)
Q Consensus 66 ~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 145 (417)
...|+.+|+++||++|.+.+. |.......+..|..+...+. +.|+. .+.. +.-.-++++|.++...+.|+
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~ss--~id~~~~~ra~~r~~r~~~L-~dPh~------~k~~-~s~d~~idnPLSq~~~S~W~ 96 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENSS--WIDNLRRLRANYRRLRRRLL-IDPHN------LKEN-HSPDLPIDNPLSQNPQSVWN 96 (625)
T ss_pred hhhhhHHHHHhheecCCCchh--HHHHHHHHhhhhhccccccc-cCccc------cccc-cCCCcccCCccccCCCchhh
Confidence 457999999999999998754 44556667777776644321 11111 0000 12234567888888888875
Q ss_pred CCcccchHHHHHHHHHHhHHhhcccCCCCCC-cCCCChhhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCC---
Q 014859 146 VDGAISDKKVLQWMLGLHQIGLDVVRTDRSL-VFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLEN--- 221 (417)
Q Consensus 146 ~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~-~~f~~~~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~--- 221 (417)
+.....+....|+.|+.||||.+ .+|+.+..+..|++||..|+..+|++||-|||+++.||+++|...
T Consensus 97 --------rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q 168 (625)
T KOG1091|consen 97 --------RFFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQ 168 (625)
T ss_pred --------hhcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHH
Confidence 23333456789999999999999 888888999999999999999999999999999999999998631
Q ss_pred ----------------H-----------HHHH--HHHHHHHHHhhhcc------------------cC----CCCchhHH
Q 014859 222 ----------------E-----------ADAF--WCFEHTMRRLRENF------------------RT----NTGMIGVQ 250 (417)
Q Consensus 222 ----------------E-----------~~aF--~~f~~l~~~~~~~~------------------~~----~~~~~~~~ 250 (417)
| .+++ -+++.+|..-..+| .. .++.+.+.
T Consensus 169 ~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~ 248 (625)
T KOG1091|consen 169 ALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVF 248 (625)
T ss_pred HHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHH
Confidence 2 2223 24555553311111 10 12344566
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHH-HHhhcccCCCchhhhccCCCCCCCc
Q 014859 251 SQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE-LMWAMEYNPNIFSLYESNSSTSDGR 329 (417)
Q Consensus 251 ~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD-~~l~~~~~~~~f~~~~~~~~~~~~~ 329 (417)
.....+..+|...|+.|+.||.+.+|.|++|..||+..||.|+||+.+++.+|| ++++.++..
T Consensus 249 e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~---------------- 312 (625)
T KOG1091|consen 249 EANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRG---------------- 312 (625)
T ss_pred HHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchH----------------
Confidence 677788899999999999999999999999999999999999999999999999 666654432
Q ss_pred ccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 014859 330 QVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQK 409 (417)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~ 409 (417)
.++-|++++||...|+.++.. +..-.++.+-+.+..+|+++++..|..+..
T Consensus 313 ---------------------------~Lv~~m~VsmLL~IRd~Llss--~~~tcL~~Lm~yP~~~Dv~~~iekAl~l~~ 363 (625)
T KOG1091|consen 313 ---------------------------ILVACMFVSMLLYIRDSLLSS--EYQTCLQYLMNYPEIIDVDKFIEKALHLQK 363 (625)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHh--cchhHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 278899999999999999984 344499999999999999999999998875
No 13
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.95 E-value=2.5e-28 Score=246.18 Aligned_cols=249 Identities=18% Similarity=0.350 Sum_probs=211.8
Q ss_pred HHHHHhhccCCC-ccHHH--HHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014859 38 RRWHAAFSEDGH-LDIAK--VLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPII 114 (417)
Q Consensus 38 ~~W~~~l~~~~~-id~~~--l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 114 (417)
+.|.+++..+|. +++.. .++++.+.|+|...|+++|.++.|.. ..+..+...|.++.+...
T Consensus 174 k~W~~~f~~~G~~~~~~qt~~~~Klv~~gipe~~rgeiW~l~sGav----------~~~l~~~Geygkll~~~~------ 237 (671)
T KOG4347|consen 174 KFWKKYFIKDGPNMNQIQTILLRKLLYNGFPEDPRGEIWYLASGAV----------ASLLLNPGEYGKLLHSVT------ 237 (671)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhcCCChHHHHHHhhhHHH----------HHhhcCcHHhhhhhhccc------
Confidence 359999988766 44332 36777788999999999999999973 345567788888777531
Q ss_pred CCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHHHHHHH
Q 014859 115 GSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAI 194 (417)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ 194 (417)
++. .-....|++|+.|..|.++-|+.+.+...|+|||.+
T Consensus 238 -------------------G~~----------------------~~a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~A 276 (671)
T KOG4347|consen 238 -------------------GKR----------------------SVATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTA 276 (671)
T ss_pred -------------------CCc----------------------ccccccccCCCCCCCCcchhhhCCCchhhHHHHHHh
Confidence 000 023467999999999999999999999999999999
Q ss_pred HHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhC
Q 014859 195 YSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDL 274 (417)
Q Consensus 195 y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~ 274 (417)
|++.||+|||||-||-+++.+++.. .|+++||+++.+.+.+.+.|+ +....|......+|+.+++.+.|.|+.|+..+
T Consensus 277 ya~~Np~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~ip~yy-s~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l 354 (671)
T KOG4347|consen 277 YAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYIPDYY-SKTVVGTLIDQSVFEELVEDTLPVLGEHLAVL 354 (671)
T ss_pred hhccCCchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhccccc-chhhhhhHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 9999999999999999999988887 788999999999999888877 45677888999999999999999999999999
Q ss_pred CCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCC
Q 014859 275 DGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDK 354 (417)
Q Consensus 275 ~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (417)
+ ...+...+||+|+|-..+|++..+||-|+||.+|+.
T Consensus 355 ~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~r------------------------------------------ 391 (671)
T KOG4347|consen 355 G-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPR------------------------------------------ 391 (671)
T ss_pred c-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccH------------------------------------------
Confidence 9 667889999999999999999999999999998864
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhc
Q 014859 355 TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADIT 392 (417)
Q Consensus 355 ~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~ 392 (417)
.++-+++||+....+.|+. +.|-.+++.++.+..
T Consensus 392 ---vlFqiaLail~~N~~~il~-~~dDge~~~vl~~y~ 425 (671)
T KOG4347|consen 392 ---VLFQIALAILKQNAERILS-ATDDGEAMMVLGNYF 425 (671)
T ss_pred ---HHHHHHHHHHHhhHHHhcc-cCCchHHHHHHHHHH
Confidence 3455889999999999998 567788888776654
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=235.28 Aligned_cols=254 Identities=21% Similarity=0.354 Sum_probs=208.1
Q ss_pred HHHHHhhcc---CCCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014859 38 RRWHAAFSE---DGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPII 114 (417)
Q Consensus 38 ~~W~~~l~~---~~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 114 (417)
..|++++.. .-..|++. +-...+.|+|..-|+.+|.++.-- |. +.+.
T Consensus 550 ~~wek~~e~~~~~~k~d~ed-~~~~l~~gvprsrrgeiwtflA~q--------------------~~-~~~~-------- 599 (948)
T KOG4436|consen 550 ETWEKILERTRIKIKKDMED-LHSALRTGVPRSRRGEIWTFLAEQ--------------------HS-LNHA-------- 599 (948)
T ss_pred HHHHHHHHHhhhcccccHHH-HHHHHHccCchhhhHHHHHHHHHH--------------------HH-Hhcc--------
Confidence 479999877 22247777 455566799999999999998731 00 0000
Q ss_pred CCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh--hhHHHHHHHH
Q 014859 115 GSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDVL 192 (417)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~rIL 192 (417)
++..+++..-+..+.+.++.+..+.|..|+.||||++++|+.. .++..+.|+|
T Consensus 600 -------------------------l~~~kr~~~~p~~~llkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~L 654 (948)
T KOG4436|consen 600 -------------------------LPDKKRPPDFPYKELLKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLL 654 (948)
T ss_pred -------------------------CCcccCCCCCChHHHHHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHH
Confidence 0111111112225677888888999999999999999999875 6799999999
Q ss_pred HHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHh--hhcccCCCCchhHHHHHHHHHHHHHHHCHHHHHH
Q 014859 193 AIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQH 270 (417)
Q Consensus 193 ~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~h 270 (417)
.+|+..+|++|||||+.++|+++|+.+ +|+.||-++..||... +..|. +.+..++..++.+.+++..+.+.||+|
T Consensus 655 kayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~--pdm~~lq~qmyqLsrl~hd~hrdlyn~ 731 (948)
T KOG4436|consen 655 KAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYR--PDMKKLQIQMYQLSRLLHDYHRDLYNH 731 (948)
T ss_pred HHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhc--hHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999998 8999999999999774 44554 567789999999999999999999999
Q ss_pred HHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhcC
Q 014859 271 LEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTG 350 (417)
Q Consensus 271 L~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (417)
+.++.|.|.+|+.+||+|+|+..+|+..+.|++|.+|..|..
T Consensus 732 le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~te-------------------------------------- 773 (948)
T KOG4436|consen 732 LEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTE-------------------------------------- 773 (948)
T ss_pred HHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccc--------------------------------------
Confidence 999999999999999999999999999999999999998754
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC
Q 014859 351 LPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL 395 (417)
Q Consensus 351 ~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~ 395 (417)
++.-+++++|..++..|++ +.++++|+.+++++.+.+
T Consensus 774 -------vifK~a~~llsv~k~~l~e-~dn~e~i~d~~k~~~p~~ 810 (948)
T KOG4436|consen 774 -------VIFKVALSLLSVHKQLLLE-KDNFEEIVDFLKTTLPKM 810 (948)
T ss_pred -------hhhhhHHHHHHhhHHHHHh-hhhHHHHHHHHHHhhhhh
Confidence 3445788888888888877 679999999999877443
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.93 E-value=2.1e-25 Score=209.64 Aligned_cols=202 Identities=20% Similarity=0.269 Sum_probs=172.5
Q ss_pred HhHHhhcccCCCCCCcCCCCh----hhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 014859 162 LHQIGLDVVRTDRSLVFYESE----TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLR 237 (417)
Q Consensus 162 ~~qI~~Dv~RT~~~~~~f~~~----~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~ 237 (417)
.+|+..|+.|++...+.--.. ..++.|..++......||+..|.||.|+||..|++++ .|.+|+-+...+-....
T Consensus 97 ~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~l 175 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHL 175 (395)
T ss_pred cceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHH
Confidence 579999999998665421122 3466677777777789999999999999999999999 68999999888876544
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccC-ChhhHHHHHHHHhhcccCCCch
Q 014859 238 ENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREF-SFVDALYLWELMWAMEYNPNIF 316 (417)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l-~~~~v~riWD~~l~~~~~~~~f 316 (417)
..|. .+++.+....+..+..+++..+|+||+.|.+-.+.+ +|+.+|++|||+|.+ ++..++|++|.|++.++-
T Consensus 176 rdfM-~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl---- 249 (395)
T KOG2595|consen 176 RDFM-LPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPL---- 249 (395)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcc----
Confidence 4444 466778899999999999999999999999988876 899999999999999 899999999999997543
Q ss_pred hhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCC
Q 014859 317 SLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLD 396 (417)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d 396 (417)
..+|++++++...|++|+++..++.-+...+..++.++.
T Consensus 250 -----------------------------------------~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp 288 (395)
T KOG2595|consen 250 -----------------------------------------LPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLP 288 (395)
T ss_pred -----------------------------------------hhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccC
Confidence 468999999999999999987889989999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014859 397 AKKACNEALKIQKKY 411 (417)
Q Consensus 397 ~~~il~~A~~l~~~~ 411 (417)
.+.+++.+..++.++
T Consensus 289 ~d~lik~s~~~i~~~ 303 (395)
T KOG2595|consen 289 YDTLIKESVLLITRK 303 (395)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999997776543
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=210.53 Aligned_cols=184 Identities=24% Similarity=0.444 Sum_probs=162.4
Q ss_pred hHHhhcccCCCCCCcCCCCh--hhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcc
Q 014859 163 HQIGLDVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENF 240 (417)
Q Consensus 163 ~qI~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~ 240 (417)
.+| +|+.||++.+..|... .+++.|.+|+.+|+.+++++||||||..++++++.++ .|++|||+++.+|......+
T Consensus 187 ~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~~~~ 264 (397)
T KOG1102|consen 187 EII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYGLDL 264 (397)
T ss_pred HHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccchhc
Confidence 456 9999999999988773 5689999999999999999999999999999999998 59999999999999875444
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhc
Q 014859 241 RTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYE 320 (417)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~ 320 (417)
. ..+..++...+..+..+++...|.++.|+...++...+|+.+|++|+|+..+|++.+.|+||.++.+|..
T Consensus 265 ~-~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~-------- 335 (397)
T KOG1102|consen 265 L-SPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVS-------- 335 (397)
T ss_pred c-cccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchH--------
Confidence 4 5677899999999999999999999999999999999999999999999999999999999999998832
Q ss_pred cCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhh-hcCCCC
Q 014859 321 SNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILAD-ITGNLD 396 (417)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~-~~~~~d 396 (417)
++..++++++....+.+++. +++.++.++.+ ++...|
T Consensus 336 -------------------------------------i~~~~~~~l~~~~~~~~~~~--~~e~~~~~l~~~~~~~~~ 373 (397)
T KOG1102|consen 336 -------------------------------------ILFRFSLALLKHKADDLLDL--DFESLLSYLRVDLPKSYD 373 (397)
T ss_pred -------------------------------------HHHHHHHHHhhhhhHHHhhc--cHHHHHHHHhcccHhhcC
Confidence 45667888999888888883 69999999975 333333
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.1e-21 Score=172.55 Aligned_cols=211 Identities=22% Similarity=0.376 Sum_probs=163.2
Q ss_pred CCcccCCCCCCCCCC---CCCCCC--CHHHHHHhhccCCCc--cHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHH
Q 014859 15 DSYYPIRPECQADVP---KAGKTL--SARRWHAAFSEDGHL--DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE 87 (417)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~~~~l--~~~~W~~~l~~~~~i--d~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~ 87 (417)
|++|++.-+.....+ ...+.| ++.+|..+++++... ...+.++--|+.|||+.+|+..|++|.|...+-.
T Consensus 48 dr~gfi~~~q~a~~~k~~~~~~~L~~ReskwL~mldnw~~~m~kk~~~ir~rcrkgippslr~Raw~ylsGa~~~~~--- 124 (267)
T KOG2221|consen 48 DRFGFIEGEQGAQGKKEPETRGELRYRESKWLHMLDNWHEEMRKKQKKIRPRCRKGIPPSLRGRAWRYLSGAPSPPP--- 124 (267)
T ss_pred cccceeecccccccCCCcccHHHHHhhHHHHHHHHHHHHHHHHhccccccchhhcCCCcccchhHHHhhcCCCCCCC---
Confidence 677777666544443 112222 356899998875432 1223456667889999999999999999753322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhh
Q 014859 88 ERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGL 167 (417)
Q Consensus 88 ~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~ 167 (417)
+++..|..+ +...++|. ..+.|++
T Consensus 125 -------~np~~~~~~-------------------------~~~pG~p~------------------------t~e~i~k 148 (267)
T KOG2221|consen 125 -------KNPVVFDEL-------------------------GPAPGDPK------------------------TAEGIHK 148 (267)
T ss_pred -------CCcchhhhc-------------------------cCCCCCCc------------------------chhhhcc
Confidence 122222221 11222332 4577999
Q ss_pred cccCCCCCCcCCCCh--hhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCC
Q 014859 168 DVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTG 245 (417)
Q Consensus 168 Dv~RT~~~~~~f~~~--~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~ 245 (417)
|+.|-|+.+.+|.+. .++..|+|+|.+|..++|+.||||+-.-|++++++.+ .+.++||||+.+.+++.+.|+ .++
T Consensus 149 dl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqicekylqgy~-~sg 226 (267)
T KOG2221|consen 149 DLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQICEKYLQGYY-SSG 226 (267)
T ss_pred ccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHHHHHccccc-ccc
Confidence 999999999999874 5799999999999999999999999999999999988 788999999999999876665 356
Q ss_pred chhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHH
Q 014859 246 MIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRML 286 (417)
Q Consensus 246 ~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~ 286 (417)
+..++..-.++..|++..+|..|.|+....+++.+|...||
T Consensus 227 leaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 227 LEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred hhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 77888889999999999999999999999999999999997
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.75 E-value=2.1e-17 Score=160.34 Aligned_cols=175 Identities=18% Similarity=0.287 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCcCC--ChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHH
Q 014859 184 NQAKLWDVLAIYSWVDNDIGYVQ--GMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIR 261 (417)
Q Consensus 184 ~~~~L~rIL~~y~~~~p~igY~Q--Gm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~ 261 (417)
....|..++..|+... ++.|.. |+-.+.-|++++-.+.++.|-||..+++++.+.-...++. .+..|+-||+
T Consensus 91 vv~dlES~iTfYCK~R-n~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~-----~Fh~FRLLlq 164 (669)
T KOG3636|consen 91 VVSDLESFITFYCKKR-NMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQ-----IFHLFRLLLQ 164 (669)
T ss_pred hhHhhhhHhhhhhhcc-CCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCc-----cchHHHHHHH
Confidence 3557788888888622 244544 7788899999988899999999999999987666544432 4789999999
Q ss_pred HHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhch
Q 014859 262 TIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGK 341 (417)
Q Consensus 262 ~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (417)
.|+|+|+.||..+.++|.+|+..||-+||+...+.+.+..+||.++..+...
T Consensus 165 YHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF---------------------------- 216 (669)
T KOG3636|consen 165 YHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPF---------------------------- 216 (669)
T ss_pred hcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCce----------------------------
Confidence 9999999999999999999999999999999999999999999999876542
Q ss_pred hhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHH-hcCChHHHHHHHhhhcCCC---CHHHHHHHHHHHH
Q 014859 342 FERKNVKTGLPDKTSALSVFLVASVLETKNKKLLR-EAKGLDDVVKILADITGNL---DAKKACNEALKIQ 408 (417)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~-~~~~~~~i~~~l~~~~~~~---d~~~il~~A~~l~ 408 (417)
++.|+++.+|..-|+.||+ ...+.+++++||.+++..+ |+..+++.|....
T Consensus 217 ----------------~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 217 ----------------LVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred ----------------ehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 4566788999999999995 3457899999999999776 7778888886544
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.54 E-value=5.3e-14 Score=145.28 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=190.0
Q ss_pred HHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCccCC
Q 014859 55 VLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQD 134 (417)
Q Consensus 55 l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (417)
.+.....+|+|...|..+|+.|+..- +. ++ ....+.|.++.....-
T Consensus 176 ~l~e~Ve~~~p~~frli~~qlLssat--d~-----~q--~~I~e~~sdl~~~s~~------------------------- 221 (948)
T KOG4436|consen 176 KLKELVEGGIPMHFRLIRWQLLSSAT--DR-----EQ--ALIFEDYSDLAPCSSQ------------------------- 221 (948)
T ss_pred hhHHHHhcCCchHHHHHHHHHhcccc--cc-----hh--hHHHHHHHHHhhhcch-------------------------
Confidence 46778899999999999999999852 11 11 2245666666553110
Q ss_pred CCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChh---------hHHHHHHHHHHHHHhcCCCCcC
Q 014859 135 SNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET---------NQAKLWDVLAIYSWVDNDIGYV 205 (417)
Q Consensus 135 p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~---------~~~~L~rIL~~y~~~~p~igY~ 205 (417)
..++ .+.-.|..|+.||++.+.+|++.. .++.|+|+..+|+...-++|||
T Consensus 222 ----------------~Ek~-----~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifs 280 (948)
T KOG4436|consen 222 ----------------QEKE-----LHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFS 280 (948)
T ss_pred ----------------hhhh-----HHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 0111 245679999999999999998852 4899999999999999999999
Q ss_pred CChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCH-HHHHHHHhCCCCccchHHH
Q 014859 206 QGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDP-KLHQHLEDLDGGEYLFAFR 284 (417)
Q Consensus 206 QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P-~L~~hL~~~~i~~~~f~~~ 284 (417)
||=+.|++.+++++ +++.+|..++.+|..++..-.+.+.+..+-..+..++...+...| .|+.|+.+.+++.++|...
T Consensus 281 qGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs 359 (948)
T KOG4436|consen 281 QGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARS 359 (948)
T ss_pred cchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHH
Confidence 99999999888877 788999999999999876666677777788889999999999999 9999999999999999999
Q ss_pred HHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHH
Q 014859 285 MLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVA 364 (417)
Q Consensus 285 W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (417)
||++.|...+|+...-++.|.+.+.|-. +.....+
T Consensus 360 ~flt~~ltt~Pi~~a~r~~~~f~~egll---------------------------------------------k~fr~~i 394 (948)
T KOG4436|consen 360 WFLTNFLTTFPIFMAARISDTFSSEGLL---------------------------------------------KRFRDSI 394 (948)
T ss_pred HHHHhhcccCchhhccccccccccccHH---------------------------------------------HHHhhhH
Confidence 9999999999999999999999987632 2345677
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHh-hhcCCC
Q 014859 365 SVLETKNKKLLREAKGLDDVVKILA-DITGNL 395 (417)
Q Consensus 365 ail~~~r~~il~~~~~~~~i~~~l~-~~~~~~ 395 (417)
|++...++.-+. ..|++.....++ +.+...
T Consensus 395 a~~~~~~d~~~~-s~D~EG~~~~~qr~~s~~v 425 (948)
T KOG4436|consen 395 AYLHQLRDIELE-SLDMEGMLSYFQRNRSNTV 425 (948)
T ss_pred HHHHHHhhhhhh-ccCccccccchhhcccccc
Confidence 888444444444 578988887775 344444
No 20
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.45 E-value=1.2e-14 Score=142.83 Aligned_cols=275 Identities=23% Similarity=0.366 Sum_probs=210.3
Q ss_pred CCCCCCCHHHHHHhhccCCCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 014859 30 KAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQN 109 (417)
Q Consensus 30 ~~~~~l~~~~W~~~l~~~~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~ 109 (417)
+++.++|++.|.++..+ ..+..-.+++..++||.....|+.+|+.+++.+..++...+.+.......+.|....-.+..
T Consensus 526 da~~glt~~~W~qy~~d-~t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~ 604 (813)
T KOG1648|consen 526 DASAGLTEKFWKQYRAD-PTIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR 604 (813)
T ss_pred CccccccHHHHHHHhcC-CchHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh
Confidence 78899999999999765 46666667888999999999999999999999888887766666666666777654443332
Q ss_pred hccccCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHH
Q 014859 110 IVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLW 189 (417)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~ 189 (417)
...+.|++|+.|+.++..+|.++.+.+. +
T Consensus 605 --------------------------------------------------~~~~~~~kd~e~~~~~~~~fs~~~~les-~ 633 (813)
T KOG1648|consen 605 --------------------------------------------------ANLHRIDKDVERCDRNLMFFSNKDNLES-R 633 (813)
T ss_pred --------------------------------------------------hheeeecchhhhCcchheeecCCcchhh-h
Confidence 2357899999999999999999988888 8
Q ss_pred HHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCHHHHH
Q 014859 190 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 269 (417)
Q Consensus 190 rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~ 269 (417)
++...|...+-+-||.|||+++.+|++..+++|..+--||.-+|-+.+..|.. .+++...+-.++ +++..+|-..
T Consensus 634 ~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q---~~~~~~~l~~~r-~~~v~~~l~s- 708 (813)
T KOG1648|consen 634 RVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQ---RPGMSKCLLNLR-LIQVVDPLIS- 708 (813)
T ss_pred eeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCC---CCCccccccccc-chhhhcchhc-
Confidence 89999999999999999999999999999999888777888888777766653 234444444443 5666666222
Q ss_pred HHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhc
Q 014859 270 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKT 349 (417)
Q Consensus 270 hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (417)
-++. .+-..++||..-|.++++.+-...+|..+++...-
T Consensus 709 ~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------------------------------------- 747 (813)
T KOG1648|consen 709 DIDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRL------------------------------------- 747 (813)
T ss_pred chhh----hhhcceeeeccCcccccCCCCcceeeEeecccccc-------------------------------------
Confidence 2211 12345999999999999999999999999975321
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHH
Q 014859 350 GLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALK 406 (417)
Q Consensus 350 ~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~ 406 (417)
..+..|.+|+..+. -...+.++....+..+++++++.+.+.-|-+.++.-|..
T Consensus 748 ---~~~~~~~i~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~ 800 (813)
T KOG1648|consen 748 ---RITDDFAIFFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSART 800 (813)
T ss_pred ---ccCcchhhhhhhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcc
Confidence 01234778888877 556677777677889999999998877777776655543
No 21
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.2e-07 Score=88.73 Aligned_cols=186 Identities=12% Similarity=0.126 Sum_probs=140.2
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhh-hcccCCCCchhHHHHHHHHHHHH
Q 014859 182 ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLR-ENFRTNTGMIGVQSQLSTLSQII 260 (417)
Q Consensus 182 ~~~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~lL 260 (417)
..+....++||.+.++..|+|++|..+..+++.++...-+|+++|--.++++..-. +.-+.+..+......+..|..++
T Consensus 108 argegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlv 187 (559)
T KOG2801|consen 108 ARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLV 187 (559)
T ss_pred CcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHH
Confidence 35566788999999999999999999999999999999999999988777764311 11111334446677788899999
Q ss_pred HHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhc
Q 014859 261 RTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCG 340 (417)
Q Consensus 261 ~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 340 (417)
.+....-++.+....-+.......|-..+|. ++|+-...|++|.|+.+|+.
T Consensus 188 nkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflvegyk---------------------------- 238 (559)
T KOG2801|consen 188 NKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVEGYK---------------------------- 238 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeecchH----------------------------
Confidence 9998888887765544444556778777775 59999999999999999875
Q ss_pred hhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHH----HHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHH
Q 014859 341 KFERKNVKTGLPDKTSALSVFLVASVLETKNKKL----LREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLS 413 (417)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~i----l~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~~~~~ 413 (417)
.+..+++|||....+.- ++...-..+|-.|..++.....+++++.+|..++.--++
T Consensus 239 -----------------vlyrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairlfsrk 298 (559)
T KOG2801|consen 239 -----------------VLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRLFSRK 298 (559)
T ss_pred -----------------HHHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhHH
Confidence 34557788887665432 343344566777888999999999999999887654333
No 22
>PF14961 BROMI: Broad-minded protein
Probab=97.23 E-value=0.012 Score=65.32 Aligned_cols=178 Identities=9% Similarity=0.092 Sum_probs=121.6
Q ss_pred HHHHHHHHhcCCCCcCCChhHHHHHHHHhc-CCHHHHHHHHHHHHHHhh------hc--c---cC-----CCCchhHHHH
Q 014859 190 DVLAIYSWVDNDIGYVQGMNDICSPMIVLL-ENEADAFWCFEHTMRRLR------EN--F---RT-----NTGMIGVQSQ 252 (417)
Q Consensus 190 rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~-~~E~~aF~~f~~l~~~~~------~~--~---~~-----~~~~~~~~~~ 252 (417)
+++..|..+...-+|. |..-.++.+++++ .+-+.+.-.+.++-..+. +. . .. ....+-....
T Consensus 1088 ~~~~~~~~~~~~~~y~-g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~~~ 1166 (1296)
T PF14961_consen 1088 HILFEFIHFCLQGSYP-GHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYFCS 1166 (1296)
T ss_pred HHHhhhhcccCCCCCC-CchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhhhH
Confidence 3444554555554554 6666666555555 444444444433332221 11 0 00 0111122346
Q ss_pred HHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccc
Q 014859 253 LSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVN 332 (417)
Q Consensus 253 ~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 332 (417)
+..++.+|+...|.++.-|.-.|..+...|.+|+.-+|=+-+++..++.-.=..+..|+.
T Consensus 1167 ~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~d-------------------- 1226 (1296)
T PF14961_consen 1167 CHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPD-------------------- 1226 (1296)
T ss_pred HHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCcc--------------------
Confidence 789999999999999999999999999999999999999999999988777777776654
Q ss_pred hhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhh-cCCCCHHHHHHHHHHHHHHH
Q 014859 333 DKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADI-TGNLDAKKACNEALKIQKKY 411 (417)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~-~~~~d~~~il~~A~~l~~~~ 411 (417)
|.+|+|+|++.+.++.||+.. .-.++..|++.- -....+..-+.-...|-.+|
T Consensus 1227 -------------------------yqvY~~VailkHlq~~ilq~~-q~q~L~~flke~~l~gF~~~~~~~yM~~Le~~y 1280 (1296)
T PF14961_consen 1227 -------------------------YQVYICVAILKHLQPEILQHT-QTQDLQVFLKEEALRGFRVSDYLEYMENLEQRY 1280 (1296)
T ss_pred -------------------------ceeehhHHHHHHhhHHHHHhh-hhchHHHHhhhccccceeHHhHHHHHHHHHHHh
Confidence 679999999999999999864 444466666642 24667777777777777777
Q ss_pred HHh
Q 014859 412 LSK 414 (417)
Q Consensus 412 ~~~ 414 (417)
+..
T Consensus 1281 R~~ 1283 (1296)
T PF14961_consen 1281 RPR 1283 (1296)
T ss_pred HhH
Confidence 654
No 23
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=80.78 E-value=0.58 Score=46.82 Aligned_cols=33 Identities=39% Similarity=0.976 Sum_probs=31.5
Q ss_pred CCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014859 202 IGYVQGMNDICSPMIVLLENEADAFWCFEHTMR 234 (417)
Q Consensus 202 igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~ 234 (417)
+|..|||++++||+|.-..+|.++||||+.||.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmq 598 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQ 598 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhc
Confidence 788899999999999999999999999999997
No 24
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=67.42 E-value=2.7 Score=43.91 Aligned_cols=76 Identities=28% Similarity=0.448 Sum_probs=60.3
Q ss_pred CCHHHHHHhhccCCCccHH-HHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014859 35 LSARRWHAAFSEDGHLDIA-KVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 111 (417)
Q Consensus 35 l~~~~W~~~l~~~~~id~~-~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (417)
++.+.|.....+.+.++.. ........+|+-+.+|+.+|+.++++++++.+..++...... ...|...+.+|....
T Consensus 148 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~ 224 (488)
T KOG2197|consen 148 LTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTS 224 (488)
T ss_pred chhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheecc
Confidence 7889999988777776422 223366777786699999999999999999999888777666 888998888886543
No 25
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=40.12 E-value=51 Score=23.26 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccC
Q 014859 256 LSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREF 294 (417)
Q Consensus 256 ~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l 294 (417)
|-.+--++.|+--..|++.||+.+.-.++-|++||+..+
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 455667888999999999999999999999999998754
No 26
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=34.21 E-value=29 Score=20.68 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=11.6
Q ss_pred CCcCCChhHHHHHHHH
Q 014859 202 IGYVQGMNDICSPMIV 217 (417)
Q Consensus 202 igY~QGm~~Iaa~ll~ 217 (417)
-||+||+.+...-.|.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 4899999887765443
No 27
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=27.21 E-value=1.4e+02 Score=21.56 Aligned_cols=49 Identities=10% Similarity=0.279 Sum_probs=32.2
Q ss_pred HHHHHHHHHH-hcCChHHHHHHHhhhcCCCCHHHHH------HHHHHHHHHHHHhhcC
Q 014859 367 LETKNKKLLR-EAKGLDDVVKILADITGNLDAKKAC------NEALKIQKKYLSKSKK 417 (417)
Q Consensus 367 l~~~r~~il~-~~~~~~~i~~~l~~~~~~~d~~~il------~~A~~l~~~~~~~~~~ 417 (417)
....|+.+++ -+.++++++.-++.+... ++.++ ..-..||.+|...+.|
T Consensus 3 Fe~qR~~Li~eI~~~~e~vl~nlN~LNRs--LE~~i~VGkEF~~V~~LW~~F~~~m~~ 58 (58)
T PF08649_consen 3 FERQRDRLIQEISESMESVLNNLNALNRS--LESVISVGKEFESVSSLWSQFYNGMAK 58 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 4567888774 346889999988877655 33443 3445677887766543
No 28
>PRK10878 hypothetical protein; Provisional
Probab=23.11 E-value=1.1e+02 Score=23.05 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHhCCCCc
Q 014859 250 QSQLSTLSQIIRTIDPKLHQHLEDLDGGE 278 (417)
Q Consensus 250 ~~~~~~~~~lL~~~~P~L~~hL~~~~i~~ 278 (417)
......|+.||...||+||..+...+-.+
T Consensus 21 ~~e~~~Fe~LL~~~D~dL~~W~~g~~~p~ 49 (72)
T PRK10878 21 DDEKRIFIRLLECDDPDLFNWLMNHGKPA 49 (72)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCCCC
Confidence 44678999999999999999999766544
No 29
>PF13041 PPR_2: PPR repeat family
Probab=20.42 E-value=1.4e+02 Score=19.96 Aligned_cols=26 Identities=12% Similarity=0.177 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCccchHHHHHHHhhc
Q 014859 266 KLHQHLEDLDGGEYLFAFRMLMVLFR 291 (417)
Q Consensus 266 ~L~~hL~~~~i~~~~f~~~W~~tlF~ 291 (417)
+|++.+.+.|+.|..+++.-++..|+
T Consensus 24 ~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 24 KLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 47788888999999988887777664
Done!