Query 014859
Match_columns 417
No_of_seqs 199 out of 1770
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 8E-52 2.7E-56 409.7 27.0 289 34-414 23-339 (345)
2 1fkm_A Protein (GYP1P), ORF YO 100.0 1.3E-51 4.5E-56 414.4 25.9 328 36-414 7-385 (396)
3 2qq8_A TBC1 domain family memb 100.0 1.9E-49 6.4E-54 390.8 24.0 286 35-408 19-309 (334)
4 3qye_A TBC1 domain family memb 100.0 7.2E-49 2.5E-53 386.4 15.5 269 36-408 29-308 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2E-47 6.9E-52 372.8 17.5 258 37-407 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 3E-46 1E-50 361.4 23.3 263 37-411 20-289 (292)
7 3qwl_A TBC1 domain family memb 100.0 5.6E-40 1.9E-44 315.8 24.2 252 39-414 28-289 (294)
8 4g26_A Pentatricopeptide repea 32.8 1.9E+02 0.0064 28.7 9.8 49 266-314 126-174 (501)
9 2kvs_A Uncharacterized protein 30.3 34 0.0012 25.3 2.7 36 377-412 38-73 (80)
10 4g26_A Pentatricopeptide repea 17.6 5E+02 0.017 25.5 9.6 49 266-314 91-139 (501)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=8e-52 Score=409.67 Aligned_cols=289 Identities=22% Similarity=0.412 Sum_probs=248.3
Q ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014859 34 TLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 113 (417)
Q Consensus 34 ~l~~~~W~~~l~~~~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (417)
.-+.++|.++++.. .+|.++ ++.++++|||+.+|+.||++++|++|.+. ++|.....+++..|.++++++.....
T Consensus 23 ~~r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~- 97 (345)
T 2qfz_A 23 ASRLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN- 97 (345)
T ss_dssp -CHHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC-
Confidence 45678999999764 478888 55567899999999999999999998876 46777888899999999998642100
Q ss_pred cCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHHHHHH
Q 014859 114 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLA 193 (417)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~ 193 (417)
+ ....+..++|++||.||+|+ ++|+.+..++.|.|||.
T Consensus 98 --------------------~---------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~ 135 (345)
T 2qfz_A 98 --------------------D---------------------EVHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILF 135 (345)
T ss_dssp --------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHH
T ss_pred --------------------c---------------------cchHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHH
Confidence 0 00114578999999999999 99999999999999999
Q ss_pred HHHHhcCCCCcCCChhHHHHHHHHhcC------------------------CHHHHHHHHHHHHHHhhhcccCCCCchhH
Q 014859 194 IYSWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGV 249 (417)
Q Consensus 194 ~y~~~~p~igY~QGm~~Iaa~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~ 249 (417)
+|+.+||++|||||||+||++|++++. +|++|||||+.+|++++++|. .+.+++
T Consensus 136 ~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i 213 (345)
T 2qfz_A 136 IWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGI 213 (345)
T ss_dssp HHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHH
T ss_pred HHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHH
Confidence 999999999999999999999998874 289999999999999987776 346799
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCc
Q 014859 250 QSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGR 329 (417)
Q Consensus 250 ~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~ 329 (417)
...+..++.+|+.++|+||+||.+.|+++.+|+++||+|+|++++|++.++||||.+|++|...
T Consensus 214 ~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~---------------- 277 (345)
T 2qfz_A 214 QMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF---------------- 277 (345)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999987542
Q ss_pred ccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCC----CCHHHHHHHHH
Q 014859 330 QVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGN----LDAKKACNEAL 405 (417)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~----~d~~~il~~A~ 405 (417)
..|++|+|+|+|...|+.||+ +.+++++++++++++.. .|++.+++.|.
T Consensus 278 --------------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~ 330 (345)
T 2qfz_A 278 --------------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAY 330 (345)
T ss_dssp --------------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHH
Confidence 126789999999999999998 47999999999999965 37999999999
Q ss_pred HHHHHHHHh
Q 014859 406 KIQKKYLSK 414 (417)
Q Consensus 406 ~l~~~~~~~ 414 (417)
.++.+|...
T Consensus 331 ~l~~~~~~~ 339 (345)
T 2qfz_A 331 RLKFAFADA 339 (345)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 999988653
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.3e-51 Score=414.42 Aligned_cols=328 Identities=23% Similarity=0.387 Sum_probs=251.7
Q ss_pred CHHHHHHhhccCCCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 014859 36 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 115 (417)
Q Consensus 36 ~~~~W~~~l~~~~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 115 (417)
+.++|.+++.+.+.+|.++ ++.++++|||+.+|+.||++|+|++|.+.+ +|..+...+++.|.++++++....
T Consensus 7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~---- 79 (396)
T 1fkm_A 7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ---- 79 (396)
T ss_dssp HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS----
T ss_pred HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhcc----
Confidence 4579999998876689888 556777899999999999999999998874 577788899999999999863200
Q ss_pred CCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHHHHHHHH
Q 014859 116 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY 195 (417)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y 195 (417)
++ .+ .+..+||++||.||+|++++|+.+.+++.|+|||.+|
T Consensus 80 ------------------~~---------------~~------~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~ay 120 (396)
T 1fkm_A 80 ------------------HS---------------RD------IPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLW 120 (396)
T ss_dssp ------------------CS---------------TH------HHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHH
T ss_pred ------------------Cc---------------cc------HHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHH
Confidence 00 01 1357899999999999999999999999999999999
Q ss_pred HHhcCCCCcCCChhHHHHHHHHhcC---------------------C-------HHHHHHHHHHHHHHhhhcccCCCCch
Q 014859 196 SWVDNDIGYVQGMNDICSPMIVLLE---------------------N-------EADAFWCFEHTMRRLRENFRTNTGMI 247 (417)
Q Consensus 196 ~~~~p~igY~QGm~~Iaa~ll~~~~---------------------~-------E~~aF~~f~~l~~~~~~~~~~~~~~~ 247 (417)
+.+||++|||||||+|+++||+++. + |++|||||++||++++++|.. +.+
T Consensus 121 a~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~--~~~ 198 (396)
T 1fkm_A 121 AIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQP 198 (396)
T ss_dssp HHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST--TCH
T ss_pred HHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cHH
Confidence 9999999999999999999998752 1 999999999999999887764 467
Q ss_pred hHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCC
Q 014859 248 GVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSD 327 (417)
Q Consensus 248 ~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~ 327 (417)
++...+..++.+|+.++|+||+||.+.|+.+.+|+++||+|+|+++||++.++||||.+|++|......+.+-.. ....
T Consensus 199 ~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~-~~~~ 277 (396)
T 1fkm_A 199 GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSS-NDIK 277 (396)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhc-cccc
Confidence 999999999999999999999999999999999999999999999999999999999999988211100000000 0000
Q ss_pred Ccccchhh---hhhhch--hhhh--hhhcCCC---C---------CCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 014859 328 GRQVNDKQ---LKQCGK--FERK--NVKTGLP---D---------KTSALSVFLVASVLETKNKKLLREAKGLDDVVKIL 388 (417)
Q Consensus 328 ~~~~~~~~---~~~~~~--~~~~--~~~~~~~---~---------~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l 388 (417)
++.++... ..++|- +..+ -..++++ + +...|++|+|+|+|...|+.||+ .++++++++|
T Consensus 278 ~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L 355 (396)
T 1fkm_A 278 PPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFL 355 (396)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHH
T ss_pred CCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 00000000 011110 0000 0000101 1 11478999999999999999998 5999999999
Q ss_pred hhhcCC----CCHHHHHHHHHHHHHHHHHh
Q 014859 389 ADITGN----LDAKKACNEALKIQKKYLSK 414 (417)
Q Consensus 389 ~~~~~~----~d~~~il~~A~~l~~~~~~~ 414 (417)
++++.. .|++.++++|..++..|...
T Consensus 356 ~~~p~~~~~~~di~~ll~~A~~l~~~~~~~ 385 (396)
T 1fkm_A 356 QNPPTKDWTETDIEMLLSEAFIWQSLYKDA 385 (396)
T ss_dssp TSCSCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred hcCCCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 999963 58999999999999888654
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-49 Score=390.76 Aligned_cols=286 Identities=20% Similarity=0.306 Sum_probs=229.5
Q ss_pred CCHHHHH-HhhccCCC-ccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014859 35 LSARRWH-AAFSEDGH-LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVP 112 (417)
Q Consensus 35 l~~~~W~-~~l~~~~~-id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~ 112 (417)
-...+|. +++.+.+. .+.++ ++.++++|||+++|+.||++++|+. ...+...+.......+..|.++........
T Consensus 19 ~~~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~- 95 (334)
T 2qq8_A 19 NAVLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVE- 95 (334)
T ss_dssp CHHHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCc-
Confidence 3467898 58877555 46555 7778899999999999999999975 345555555555555566655433211000
Q ss_pred ccCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh-hhHHHHHHH
Q 014859 113 IIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDV 191 (417)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~-~~~~~L~rI 191 (417)
.+| .|.+ .....+..+||++||.||+|++++|+.+ .+++.|+||
T Consensus 96 -------------~~d-----~~~~-----------------~~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rI 140 (334)
T 2qq8_A 96 -------------NED-----AGFS-----------------AADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSI 140 (334)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHH
T ss_pred -------------ccc-----cccc-----------------cccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHH
Confidence 000 0000 0001135689999999999999999875 579999999
Q ss_pred HHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhh--hcccCCCCchhHHHHHHHHHHHHHHHCHHHHH
Q 014859 192 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLR--ENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 269 (417)
Q Consensus 192 L~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~ 269 (417)
|.+|+.+||++|||||||+|||+|++++ +|++|||||+++|++.. .+|. .+.+++...+..++.+|+.++|+||+
T Consensus 141 L~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~P~L~~ 217 (334)
T 2qq8_A 141 LGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFR--VDHGLMLTYFAAFEVFFEENLPKLFA 217 (334)
T ss_dssp HHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHS--SCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccC--CChHHHHHHHHHHHHHHHHHCHHHHH
Confidence 9999999999999999999999999887 89999999999998753 3443 44568999999999999999999999
Q ss_pred HHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhc
Q 014859 270 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKT 349 (417)
Q Consensus 270 hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (417)
||.+.|+++.+|+++||+|+|++++|++.++||||++|++|.
T Consensus 218 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~-------------------------------------- 259 (334)
T 2qq8_A 218 HFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE-------------------------------------- 259 (334)
T ss_dssp HHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH--------------------------------------
T ss_pred HHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC--------------------------------------
Confidence 999999999999999999999999999999999999999874
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 014859 350 GLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQ 408 (417)
Q Consensus 350 ~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~ 408 (417)
.|++++|+|+|...++.|++ .+++++++++++++..+|++.+++.|..+.
T Consensus 260 -------~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 260 -------EFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp -------HHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 27889999999999999998 389999999999999999999999998865
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=7.2e-49 Score=386.38 Aligned_cols=269 Identities=22% Similarity=0.428 Sum_probs=224.3
Q ss_pred CHHHHHHhhccCCC----ccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014859 36 SARRWHAAFSEDGH----LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 111 (417)
Q Consensus 36 ~~~~W~~~l~~~~~----id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (417)
+.++|.+++.+.+. .+.++ ++.++++|||+.+|+.||++|+|+.+...+..+ .....+..|.++.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 56789999987664 47777 566667899999999999999997432111000 00112345555433210
Q ss_pred cccCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh--hhHHHHH
Q 014859 112 PIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLW 189 (417)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~ 189 (417)
...++|++||.||+|++++|..+ .+++.|+
T Consensus 102 ------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~ 133 (331)
T 3qye_A 102 ------------------------------------------------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLY 133 (331)
T ss_dssp ------------------------------------------------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHH
T ss_pred ------------------------------------------------CchhHHHHhhcccCCCchhhcCCCcccHHHHH
Confidence 12478999999999999999986 7899999
Q ss_pred HHHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHh--hhcccCCCCchhHHHHHHHHHHHHHHHCHHH
Q 014859 190 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 267 (417)
Q Consensus 190 rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L 267 (417)
|||.+|+.+||++|||||||+||++|++++ +|++|||||+.+|.+. +..|. ++++++...+..++.+|+.++|+|
T Consensus 134 ~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~~p~L 210 (331)
T 3qye_A 134 NILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYR--PDMIILQIQMYQLSRLLHDYHRDL 210 (331)
T ss_dssp HHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGS--TTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887 8999999999999874 45554 567799999999999999999999
Q ss_pred HHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhh
Q 014859 268 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNV 347 (417)
Q Consensus 268 ~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (417)
|+||.+.|+++.+|+++||+|+|++++|++.++||||++|++|..
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~----------------------------------- 255 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE----------------------------------- 255 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT-----------------------------------
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH-----------------------------------
Confidence 999999999999999999999999999999999999999998754
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC---CHHHHHHHHHHHH
Q 014859 348 KTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL---DAKKACNEALKIQ 408 (417)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~---d~~~il~~A~~l~ 408 (417)
+++++|+|+|...|+.||+ +.+++++++++++...++ |++.+++.|..+.
T Consensus 256 ----------~l~~valaiL~~~~~~ll~-~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 256 ----------VIFKVALSLLGSHKPLILQ-HENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp ----------HHHHHHHHHHHHTHHHHHT-CCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCC
Confidence 7899999999999999998 469999999999855566 7889999997665
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-47 Score=372.75 Aligned_cols=258 Identities=21% Similarity=0.400 Sum_probs=220.1
Q ss_pred HHHHHHhhccCCCc---cHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014859 37 ARRWHAAFSEDGHL---DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 113 (417)
Q Consensus 37 ~~~W~~~l~~~~~i---d~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (417)
.++|.+++++.+.. +.++ ++.++++|||+.+|+.||+.|+|+.+. ....+.|..+.++.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 46799999875332 3444 666777899999999999999998652 12345676654320
Q ss_pred cCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh--hhHHHHHHH
Q 014859 114 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDV 191 (417)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--~~~~~L~rI 191 (417)
. ...++|++||.||+|++++|... .+++.|+||
T Consensus 67 --------------------~-------------------------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~I 101 (310)
T 3hzj_A 67 --------------------S-------------------------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKI 101 (310)
T ss_dssp --------------------C-------------------------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHH
T ss_pred --------------------C-------------------------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHH
Confidence 0 12478999999999999999876 679999999
Q ss_pred HHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHH--hhhcccCCCCchhHHHHHHHHHHHHHHHCHHHHH
Q 014859 192 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR--LRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 269 (417)
Q Consensus 192 L~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~ 269 (417)
|.+|+.+||++|||||||+||++|++++ +|++|||||+++|.+ +++.|. ++++++...+..++.+|+.++|+||+
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~~p~L~~ 178 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYR--NNFEDLHCKFYQLERLMQEQLPDLHS 178 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTH--HHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhccccccccc--ccHHHHHHHHHHHHHHHHHhChHHHH
Confidence 9999999999999999999999999998 899999999999987 445553 56778999999999999999999999
Q ss_pred HHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhc
Q 014859 270 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKT 349 (417)
Q Consensus 270 hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (417)
||.+.|+++.+|+++||+|+|++++|++.++||||.++++|..
T Consensus 179 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~------------------------------------- 221 (310)
T 3hzj_A 179 HFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLN------------------------------------- 221 (310)
T ss_dssp HHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTT-------------------------------------
T ss_pred HHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcH-------------------------------------
Confidence 9999999999999999999999999999999999999998754
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh-hhcCC----CCHHHHHHHHHHH
Q 014859 350 GLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILA-DITGN----LDAKKACNEALKI 407 (417)
Q Consensus 350 ~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~-~~~~~----~d~~~il~~A~~l 407 (417)
+++++|+|+|...|+.|++. ++++++++++ +++.. .|++.+++.|..+
T Consensus 222 --------~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 222 --------IIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp --------HHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 68889999999999999983 8999999996 66643 4899999999877
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3e-46 Score=361.42 Aligned_cols=263 Identities=21% Similarity=0.281 Sum_probs=220.4
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhC-C-CCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014859 37 ARRWHAAFSEDGHLDIAKVLRRIQRG-G-IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPII 114 (417)
Q Consensus 37 ~~~W~~~l~~~~~id~~~l~~~l~~~-G-IP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 114 (417)
.+++++.+. ++.+|.+++++.+..+ | +|+++|+.||++|+|+.+.+.+.. |.....
T Consensus 20 ~~~i~~~l~-~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~~--------- 77 (292)
T 4hl4_A 20 VAEIHQALN-SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNLR--------- 77 (292)
T ss_dssp HHHHHHHHT-SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTHH---------
T ss_pred HHHHHHHHc-CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhhc---------
Confidence 346777774 4568999966655543 3 689999999999999977654211 110000
Q ss_pred CCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCCh----hhHHHHHH
Q 014859 115 GSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE----TNQAKLWD 190 (417)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~----~~~~~L~r 190 (417)
...+..+||++||.||+++++.|... ..++.|.|
T Consensus 78 ------------------------------------------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~ 115 (292)
T 4hl4_A 78 ------------------------------------------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELID 115 (292)
T ss_dssp ------------------------------------------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHH
T ss_pred ------------------------------------------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHH
Confidence 01134689999999999999988653 45789999
Q ss_pred HHHHHHHhcCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCHHHHHH
Q 014859 191 VLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQH 270 (417)
Q Consensus 191 IL~~y~~~~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~~h 270 (417)
||.+|+.+||++|||||||+||++|++++ +|++|||||+++|+...+.|+ .+++.++...+..++.+|+.++|+||+|
T Consensus 116 iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~-~~~~~~~~~~~~~l~~ll~~~~P~L~~h 193 (292)
T 4hl4_A 116 IILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFM-DPTMDNTKHILNYLMPIIDQVNPELHDF 193 (292)
T ss_dssp HHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGG-CSSSCTTTGGGGGHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 99999999999999999999999999887 899999999999997554444 4566788899999999999999999999
Q ss_pred HHhCCCCccchHHHHHHHhhcccCC-hhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhhc
Q 014859 271 LEDLDGGEYLFAFRMLMVLFRREFS-FVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKT 349 (417)
Q Consensus 271 L~~~~i~~~~f~~~W~~tlF~~~l~-~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (417)
|.+.++ ..+|+++||+|+|++++| ++.++||||.++++|..
T Consensus 194 L~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~------------------------------------- 235 (292)
T 4hl4_A 194 MQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL------------------------------------- 235 (292)
T ss_dssp HC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTT-------------------------------------
T ss_pred HHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCc-------------------------------------
Confidence 999999 469999999999999996 99999999999998753
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 014859 350 GLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKY 411 (417)
Q Consensus 350 ~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~~~ 411 (417)
+++|+|+|++...|+.||+...+++.++.++++++..+|++.+++.|..++++|
T Consensus 236 --------~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~ 289 (292)
T 4hl4_A 236 --------MPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQF 289 (292)
T ss_dssp --------HHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence 689999999999999999865689999999999999999999999999999987
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.6e-40 Score=315.84 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=206.2
Q ss_pred HHHHhhccCCCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCc
Q 014859 39 RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGK 118 (417)
Q Consensus 39 ~W~~~l~~~~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~ 118 (417)
....++ ++..+|.+++++.+++||||+.+|+.||++|+|++|.+++. |+.++++++++|.+++++..
T Consensus 28 ~~~~ll-~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~---------- 94 (294)
T 3qwl_A 28 SLEILL-KDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALK---------- 94 (294)
T ss_dssp HHHHHT-TSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHh-cCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhh----------
Confidence 455655 45778999977777776699999999999999999999854 78899999999999988732
Q ss_pred cccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHHHHHHHHHHh
Q 014859 119 FITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWV 198 (417)
Q Consensus 119 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~~~ 198 (417)
+.++|+.+.++ ....+..|...
T Consensus 95 ------------------------------------------~~r~I~~~tP~----------------~~vfl~~~~~~ 116 (294)
T 3qwl_A 95 ------------------------------------------VVRFVSDATPQ----------------AEVYLRMYQLE 116 (294)
T ss_dssp ------------------------------------------HTTSCCTTSCH----------------HHHHHHHHHHH
T ss_pred ------------------------------------------hhhhhhccCch----------------HHHHHHHHHcc
Confidence 23444432211 11122222211
Q ss_pred ----------cCCCCcCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCCchhHHHHHHHHHHHHHHHCHHHH
Q 014859 199 ----------DNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLH 268 (417)
Q Consensus 199 ----------~p~igY~QGm~~Iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~P~L~ 268 (417)
+++ .++|||..||++++.++.+|++|||||+++|++++++|.. +.+|++.. ++.+|+.++|+|+
T Consensus 117 ~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~--~~~gl~~~---l~~LL~~~dP~L~ 190 (294)
T 3qwl_A 117 SGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD--SLPQLPKA---FEQYLNLEDGRLL 190 (294)
T ss_dssp HTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTT--TGGGHHHH---HHHHHHHHCHHHH
T ss_pred cccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCC--ChhHHHHH---HHHHHHHHHHHHH
Confidence 122 2459999999999999999999999999999998877764 46688765 4899999999999
Q ss_pred HHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCcccchhhhhhhchhhhhhhh
Q 014859 269 QHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVK 348 (417)
Q Consensus 269 ~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (417)
+||.+.|+.+.+++.+||+|+|++++|++.++||||.+|++|.
T Consensus 191 ~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~------------------------------------- 233 (294)
T 3qwl_A 191 THLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSC------------------------------------- 233 (294)
T ss_dssp HHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS-------------------------------------
T ss_pred HHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc-------------------------------------
Confidence 9999999988887789999999999999999999999999653
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 014859 349 TGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSK 414 (417)
Q Consensus 349 ~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~~~~~~ 414 (417)
.|++++|+|+|..+|+.||+ +...+++++++++++ ..|++.++++|..++.+|+..
T Consensus 234 --------~~l~~valAiL~~~r~~Ll~-~~~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~~ 289 (294)
T 3qwl_A 234 --------KILVFVAVEILLTFKIKVMA-LNSAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCGT 289 (294)
T ss_dssp --------THHHHHHHHHHHHTHHHHHH-CCSHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHCC
T ss_pred --------hHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCCC
Confidence 37899999999999999998 456699999999999 679999999999999999863
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=32.84 E-value=1.9e+02 Score=28.71 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCC
Q 014859 266 KLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPN 314 (417)
Q Consensus 266 ~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~ 314 (417)
+++..+.+.|+.|...++.-++..|++.=.++...++|+.+...|..|+
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 3566777889999999999999999998899999999999999887765
No 9
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=30.31 E-value=34 Score=25.30 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=27.5
Q ss_pred hcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 014859 377 EAKGLDDVVKILADITGNLDAKKACNEALKIQKKYL 412 (417)
Q Consensus 377 ~~~~~~~i~~~l~~~~~~~d~~~il~~A~~l~~~~~ 412 (417)
+.+++++|..++....-+-.+-+++++|+.+|++-.
T Consensus 38 ~~~d~~eIs~Yle~~~~~~~~~e~vkralsly~~~~ 73 (80)
T 2kvs_A 38 LEERHQVIRAYVMSNYTDHQLIETTNRAISLYMANL 73 (80)
T ss_dssp SCSSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999875545456778899999998754
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=17.65 E-value=5e+02 Score=25.49 Aligned_cols=49 Identities=12% Similarity=-0.099 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCC
Q 014859 266 KLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPN 314 (417)
Q Consensus 266 ~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~ 314 (417)
+|+..+.+.|+.|..+++.-++..+++.=.++....+++.+...|..|+
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd 139 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR 139 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Confidence 3667778889999999999999999999999999999999998887665
Done!