Query 014860
Match_columns 417
No_of_seqs 473 out of 2141
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.5E-49 3.4E-54 405.0 38.7 297 99-407 470-767 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.1E-49 6.7E-54 402.8 39.3 296 99-408 435-733 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 7.3E-45 1.6E-49 367.1 32.8 284 99-407 187-507 (697)
4 PLN03081 pentatricopeptide (PP 100.0 6E-44 1.3E-48 360.4 36.0 287 100-407 86-439 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.7E-43 3.6E-48 365.2 33.9 301 89-407 239-638 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-42 2.5E-47 359.1 29.5 294 92-407 141-437 (857)
7 PRK11788 tetratricopeptide rep 99.9 7.2E-19 1.5E-23 166.7 32.9 286 87-391 54-349 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.7E-18 3.7E-23 164.1 35.1 278 110-406 44-327 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 1.9E-16 4.1E-21 165.9 38.4 287 104-409 570-886 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 2.9E-16 6.2E-21 164.5 39.2 283 103-407 535-817 (899)
11 PRK15174 Vi polysaccharide exp 99.7 8E-14 1.7E-18 139.5 38.7 283 87-390 61-348 (656)
12 PRK15174 Vi polysaccharide exp 99.7 5.3E-13 1.2E-17 133.6 38.5 296 87-404 95-397 (656)
13 KOG4422 Uncharacterized conser 99.6 1.7E-12 3.7E-17 115.6 27.9 292 94-401 199-565 (625)
14 TIGR00990 3a0801s09 mitochondr 99.6 2.7E-11 5.9E-16 121.4 37.2 166 212-390 332-497 (615)
15 TIGR00990 3a0801s09 mitochondr 99.6 1.3E-11 2.9E-16 123.7 34.2 259 114-390 307-572 (615)
16 KOG4422 Uncharacterized conser 99.6 6E-12 1.3E-16 112.1 27.4 290 103-410 118-449 (625)
17 KOG4626 O-linked N-acetylgluco 99.6 2.3E-12 5.1E-17 119.6 24.6 278 102-403 219-499 (966)
18 PF13429 TPR_15: Tetratricopep 99.6 4.1E-14 8.9E-19 127.6 12.4 261 107-388 14-276 (280)
19 PRK11447 cellulose synthase su 99.5 7.5E-11 1.6E-15 126.1 37.6 181 87-282 288-523 (1157)
20 PF13429 TPR_15: Tetratricopep 99.5 1.5E-13 3.3E-18 123.9 12.3 254 142-413 13-267 (280)
21 PRK11447 cellulose synthase su 99.5 3.5E-10 7.5E-15 121.0 38.5 263 109-390 359-701 (1157)
22 PRK10747 putative protoheme IX 99.5 1E-10 2.2E-15 110.6 30.8 255 109-388 126-389 (398)
23 COG2956 Predicted N-acetylgluc 99.5 3.1E-10 6.7E-15 98.0 27.4 289 86-391 53-349 (389)
24 PRK14574 hmsH outer membrane p 99.4 1.4E-09 3.1E-14 109.9 36.6 143 261-404 299-460 (822)
25 PRK10049 pgaA outer membrane p 99.4 1.9E-09 4.1E-14 110.4 38.2 291 104-405 52-404 (765)
26 PRK10049 pgaA outer membrane p 99.4 1.1E-09 2.4E-14 112.1 36.4 299 87-402 68-435 (765)
27 KOG4626 O-linked N-acetylgluco 99.4 5.6E-11 1.2E-15 110.7 24.0 247 139-407 220-469 (966)
28 TIGR00540 hemY_coli hemY prote 99.4 7.8E-10 1.7E-14 105.1 32.7 279 88-388 104-398 (409)
29 PF13041 PPR_2: PPR repeat fam 99.4 3.2E-13 7E-18 86.8 6.6 49 288-336 1-49 (50)
30 COG2956 Predicted N-acetylgluc 99.4 1E-09 2.3E-14 94.8 29.5 275 113-407 47-328 (389)
31 PF13041 PPR_2: PPR repeat fam 99.4 3.8E-13 8.3E-18 86.4 6.7 50 323-372 1-50 (50)
32 PRK09782 bacteriophage N4 rece 99.4 2.9E-09 6.3E-14 109.9 38.4 233 136-391 476-708 (987)
33 PRK10747 putative protoheme IX 99.4 1.5E-09 3.2E-14 102.7 33.4 271 113-409 96-376 (398)
34 TIGR02521 type_IV_pilW type IV 99.4 6.3E-10 1.4E-14 97.0 27.4 201 173-388 31-231 (234)
35 TIGR00540 hemY_coli hemY prote 99.4 3.2E-09 6.9E-14 100.9 32.8 284 105-409 86-385 (409)
36 PRK09782 bacteriophage N4 rece 99.4 3.3E-09 7.1E-14 109.6 34.6 276 89-390 462-741 (987)
37 PRK14574 hmsH outer membrane p 99.4 1.1E-08 2.3E-13 103.7 37.1 300 98-407 96-497 (822)
38 KOG1126 DNA-binding cell divis 99.3 3.6E-10 7.7E-15 106.5 23.0 268 114-407 332-604 (638)
39 TIGR02521 type_IV_pilW type IV 99.3 3E-09 6.6E-14 92.6 27.2 202 135-353 29-231 (234)
40 KOG4318 Bicoid mRNA stability 99.3 6.9E-11 1.5E-15 114.1 17.3 82 322-406 201-283 (1088)
41 PRK12370 invasion protein regu 99.3 2.4E-09 5.2E-14 105.7 28.8 248 117-390 277-536 (553)
42 COG3071 HemY Uncharacterized e 99.3 1.7E-08 3.8E-13 89.9 30.6 256 113-387 96-388 (400)
43 KOG4318 Bicoid mRNA stability 99.2 4E-10 8.6E-15 109.0 17.6 257 87-375 11-286 (1088)
44 PRK12370 invasion protein regu 99.2 3.5E-08 7.5E-13 97.5 30.8 248 135-404 254-519 (553)
45 KOG1126 DNA-binding cell divis 99.2 3.6E-09 7.9E-14 99.8 22.2 259 105-391 357-622 (638)
46 KOG2076 RNA polymerase III tra 99.2 2.6E-07 5.7E-12 90.3 34.0 261 115-391 153-480 (895)
47 KOG1155 Anaphase-promoting com 99.2 1E-07 2.2E-12 86.5 28.4 216 174-407 331-553 (559)
48 KOG1155 Anaphase-promoting com 99.2 1.1E-07 2.4E-12 86.3 27.2 248 131-399 256-509 (559)
49 KOG1840 Kinesin light chain [C 99.1 2.5E-08 5.3E-13 94.7 23.6 246 134-387 196-477 (508)
50 KOG2003 TPR repeat-containing 99.1 1.2E-07 2.6E-12 85.7 25.9 273 111-407 429-707 (840)
51 COG3071 HemY Uncharacterized e 99.1 4.8E-07 1E-11 80.8 27.3 246 149-411 96-378 (400)
52 KOG2076 RNA polymerase III tra 99.1 7.8E-07 1.7E-11 87.1 30.9 281 91-389 162-512 (895)
53 KOG1129 TPR repeat-containing 99.1 3.2E-08 6.9E-13 85.9 19.0 230 141-390 227-459 (478)
54 PRK11189 lipoprotein NlpI; Pro 99.0 1.2E-06 2.7E-11 79.3 29.6 149 115-280 40-191 (296)
55 PRK11189 lipoprotein NlpI; Pro 99.0 1.2E-06 2.7E-11 79.3 29.2 235 151-406 40-282 (296)
56 PF12569 NARP1: NMDA receptor- 99.0 3E-06 6.5E-11 81.6 30.5 273 108-388 11-333 (517)
57 KOG1840 Kinesin light chain [C 98.9 3.4E-07 7.4E-12 87.1 22.5 243 103-353 201-478 (508)
58 COG3063 PilF Tfp pilus assembl 98.9 3.5E-06 7.6E-11 70.1 24.6 209 175-399 37-245 (250)
59 KOG1129 TPR repeat-containing 98.9 2.5E-07 5.5E-12 80.4 18.4 230 105-354 227-458 (478)
60 PF12854 PPR_1: PPR repeat 98.9 2.8E-09 6.1E-14 61.6 4.1 32 355-386 2-33 (34)
61 PF12854 PPR_1: PPR repeat 98.9 3.5E-09 7.5E-14 61.3 4.2 32 320-351 2-33 (34)
62 KOG2002 TPR-containing nuclear 98.9 1.4E-06 3E-11 86.0 24.0 276 107-391 502-800 (1018)
63 cd05804 StaR_like StaR_like; a 98.8 1.8E-05 3.9E-10 74.0 31.0 262 110-388 15-292 (355)
64 KOG2003 TPR repeat-containing 98.8 5.3E-06 1.2E-10 75.4 24.8 209 147-375 500-709 (840)
65 PF04733 Coatomer_E: Coatomer 98.8 5E-07 1.1E-11 81.0 18.3 250 111-390 11-266 (290)
66 KOG1173 Anaphase-promoting com 98.8 1.6E-05 3.5E-10 74.3 28.1 271 110-405 253-533 (611)
67 cd05804 StaR_like StaR_like; a 98.8 2.9E-05 6.3E-10 72.6 29.6 264 111-390 53-337 (355)
68 KOG0495 HAT repeat protein [RN 98.8 0.00011 2.5E-09 70.0 32.5 116 289-405 718-862 (913)
69 KOG2002 TPR-containing nuclear 98.8 4.4E-06 9.4E-11 82.7 23.7 282 102-400 453-757 (1018)
70 KOG0547 Translocase of outer m 98.7 7.2E-06 1.6E-10 75.3 23.0 221 113-353 338-565 (606)
71 KOG1173 Anaphase-promoting com 98.7 1.9E-05 4E-10 73.9 25.4 259 93-371 269-533 (611)
72 PF04733 Coatomer_E: Coatomer 98.7 8.7E-07 1.9E-11 79.4 16.4 221 106-354 40-265 (290)
73 COG3063 PilF Tfp pilus assembl 98.7 2.5E-05 5.3E-10 65.2 23.0 191 109-316 43-233 (250)
74 KOG0495 HAT repeat protein [RN 98.7 0.00015 3.1E-09 69.3 30.8 266 102-389 517-782 (913)
75 KOG1070 rRNA processing protei 98.7 2.4E-05 5.3E-10 80.2 26.1 234 155-409 1443-1685(1710)
76 PF12569 NARP1: NMDA receptor- 98.7 5.2E-05 1.1E-09 73.2 27.5 233 143-391 10-293 (517)
77 KOG0547 Translocase of outer m 98.6 1.4E-05 3E-10 73.5 21.6 223 147-389 336-566 (606)
78 KOG1174 Anaphase-promoting com 98.6 0.00018 4E-09 65.0 27.7 267 113-400 208-511 (564)
79 KOG1128 Uncharacterized conser 98.6 1.1E-05 2.4E-10 77.6 20.2 241 133-407 394-636 (777)
80 KOG1070 rRNA processing protei 98.5 0.00012 2.5E-09 75.4 27.2 241 116-377 1440-1688(1710)
81 KOG2047 mRNA splicing factor [ 98.5 0.00052 1.1E-08 65.5 29.4 290 88-391 122-508 (835)
82 KOG1128 Uncharacterized conser 98.5 2.1E-05 4.6E-10 75.7 19.3 231 106-371 403-634 (777)
83 TIGR03302 OM_YfiO outer membra 98.4 0.00011 2.4E-09 64.3 22.0 185 171-389 31-232 (235)
84 KOG1125 TPR repeat-containing 98.4 0.00011 2.3E-09 69.2 22.1 257 109-382 293-564 (579)
85 PLN02789 farnesyltranstransfer 98.4 0.001 2.2E-08 60.7 28.2 134 111-261 47-183 (320)
86 PLN02789 farnesyltranstransfer 98.4 0.00047 1E-08 62.8 26.0 241 114-390 33-303 (320)
87 PRK14720 transcript cleavage f 98.4 0.00019 4.1E-09 73.0 25.3 82 212-319 117-198 (906)
88 COG5010 TadD Flp pilus assembl 98.4 0.0001 2.2E-09 62.9 19.0 153 145-314 74-226 (257)
89 TIGR03302 OM_YfiO outer membra 98.4 8.4E-05 1.8E-09 65.1 19.6 198 134-354 30-232 (235)
90 KOG4340 Uncharacterized conser 98.3 0.00033 7.1E-09 60.8 21.3 279 104-407 13-323 (459)
91 KOG3081 Vesicle coat complex C 98.3 0.00041 8.8E-09 59.3 21.3 252 108-390 15-272 (299)
92 TIGR00756 PPR pentatricopeptid 98.3 1.1E-06 2.4E-11 51.3 4.5 33 292-324 2-34 (35)
93 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.9E-11 50.9 4.6 33 327-359 2-34 (35)
94 KOG1915 Cell cycle control pro 98.3 0.003 6.5E-08 58.4 30.2 297 91-399 130-476 (677)
95 PF13812 PPR_3: Pentatricopept 98.3 1.6E-06 3.4E-11 50.3 4.2 32 327-358 3-34 (34)
96 KOG3081 Vesicle coat complex C 98.3 0.0021 4.6E-08 55.1 24.0 137 180-339 115-255 (299)
97 PRK04841 transcriptional regul 98.2 0.0018 3.8E-08 68.7 29.7 272 111-391 462-762 (903)
98 PRK15359 type III secretion sy 98.2 4.6E-05 9.9E-10 61.0 13.7 111 86-202 11-121 (144)
99 PRK15179 Vi polysaccharide bio 98.2 0.00064 1.4E-08 68.3 24.5 235 136-407 27-268 (694)
100 COG5010 TadD Flp pilus assembl 98.2 0.00075 1.6E-08 57.6 21.0 153 111-280 76-228 (257)
101 PF13812 PPR_3: Pentatricopept 98.2 2E-06 4.3E-11 49.9 4.1 33 291-323 2-34 (34)
102 KOG3785 Uncharacterized conser 98.2 0.00095 2.1E-08 59.3 22.1 56 108-165 64-119 (557)
103 KOG1915 Cell cycle control pro 98.2 0.0047 1E-07 57.2 28.6 259 113-392 85-354 (677)
104 PF08579 RPM2: Mitochondrial r 98.2 5.7E-05 1.2E-09 55.7 12.0 89 175-266 27-116 (120)
105 PRK10370 formate-dependent nit 98.2 0.00094 2E-08 56.6 21.4 164 217-405 22-188 (198)
106 KOG1125 TPR repeat-containing 98.2 0.00023 5E-09 67.0 18.6 221 147-387 295-525 (579)
107 PRK10370 formate-dependent nit 98.2 0.00014 3E-09 61.6 15.9 128 114-258 52-182 (198)
108 KOG3785 Uncharacterized conser 98.2 0.00036 7.9E-09 61.9 18.6 222 116-364 269-498 (557)
109 PRK15179 Vi polysaccharide bio 98.2 0.00063 1.4E-08 68.4 22.8 161 117-296 68-228 (694)
110 KOG2376 Signal recognition par 98.2 0.0048 1E-07 58.7 26.5 283 108-407 84-505 (652)
111 PRK15359 type III secretion sy 98.1 0.00041 8.9E-09 55.5 17.0 93 296-390 30-122 (144)
112 KOG4340 Uncharacterized conser 98.1 0.00065 1.4E-08 59.0 18.6 238 139-400 12-283 (459)
113 KOG3616 Selective LIM binding 98.1 0.00026 5.7E-09 68.4 17.8 167 183-386 742-908 (1636)
114 KOG1156 N-terminal acetyltrans 98.1 0.0066 1.4E-07 58.4 26.7 278 91-392 30-320 (700)
115 KOG2047 mRNA splicing factor [ 98.1 0.0073 1.6E-07 58.1 26.8 277 101-395 102-422 (835)
116 KOG2053 Mitochondrial inherita 98.1 0.0062 1.3E-07 60.6 27.2 223 113-355 21-256 (932)
117 KOG1156 N-terminal acetyltrans 98.1 0.0036 7.8E-08 60.1 24.6 256 113-388 19-282 (700)
118 KOG0985 Vesicle coat protein c 98.1 0.0045 9.7E-08 62.4 25.8 182 172-385 1103-1304(1666)
119 KOG2376 Signal recognition par 98.1 0.0014 3.1E-08 62.0 21.5 26 369-394 233-258 (652)
120 PF08579 RPM2: Mitochondrial r 98.1 0.00011 2.3E-09 54.3 11.2 79 294-372 29-116 (120)
121 COG4783 Putative Zn-dependent 98.1 0.0038 8.2E-08 58.1 23.8 223 108-353 209-436 (484)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00032 6.9E-09 65.3 17.1 125 256-388 171-296 (395)
123 PRK14720 transcript cleavage f 98.1 0.0032 7E-08 64.3 25.1 217 103-371 33-268 (906)
124 PF10037 MRP-S27: Mitochondria 98.0 7.9E-05 1.7E-09 69.6 12.6 124 206-338 61-186 (429)
125 PF10037 MRP-S27: Mitochondria 98.0 0.0001 2.2E-09 68.9 13.2 126 248-373 60-186 (429)
126 PRK04841 transcriptional regul 98.0 0.011 2.4E-07 62.7 30.4 273 108-389 416-720 (903)
127 KOG3617 WD40 and TPR repeat-co 98.0 0.0013 2.9E-08 64.6 20.7 231 111-387 738-994 (1416)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00029 6.2E-09 65.6 15.9 128 172-318 168-296 (395)
129 COG4783 Putative Zn-dependent 98.0 0.00083 1.8E-08 62.3 18.3 183 134-354 271-454 (484)
130 PF01535 PPR: PPR repeat; Int 98.0 7.5E-06 1.6E-10 46.2 3.2 27 293-319 3-29 (31)
131 KOG0985 Vesicle coat protein c 98.0 0.0022 4.8E-08 64.5 21.7 231 137-407 1104-1354(1666)
132 KOG1174 Anaphase-promoting com 98.0 0.013 2.8E-07 53.5 25.3 239 93-354 223-500 (564)
133 TIGR02552 LcrH_SycD type III s 98.0 0.00066 1.4E-08 53.6 15.2 106 136-257 16-121 (135)
134 KOG3060 Uncharacterized conser 98.0 0.0086 1.9E-07 51.1 23.7 188 150-354 25-220 (289)
135 PF01535 PPR: PPR repeat; Int 98.0 1.2E-05 2.6E-10 45.4 3.6 29 327-355 2-30 (31)
136 PF09976 TPR_21: Tetratricopep 98.0 0.00072 1.6E-08 54.2 15.3 127 256-385 14-143 (145)
137 KOG3616 Selective LIM binding 97.9 0.00036 7.9E-09 67.5 15.1 167 109-314 740-906 (1636)
138 PF06239 ECSIT: Evolutionarily 97.9 0.00036 7.8E-09 58.1 11.9 105 251-375 44-153 (228)
139 KOG2053 Mitochondrial inherita 97.8 0.034 7.4E-07 55.6 26.7 227 147-393 19-259 (932)
140 TIGR02552 LcrH_SycD type III s 97.8 0.0017 3.6E-08 51.3 15.3 98 172-282 16-113 (135)
141 PF06239 ECSIT: Evolutionarily 97.8 0.00062 1.3E-08 56.7 12.5 121 192-340 33-153 (228)
142 KOG3060 Uncharacterized conser 97.8 0.0092 2E-07 50.9 19.3 166 235-404 28-198 (289)
143 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0017 3.6E-08 49.8 14.0 100 292-391 4-107 (119)
144 KOG4162 Predicted calmodulin-b 97.7 0.055 1.2E-06 53.3 26.2 265 117-390 460-784 (799)
145 KOG1914 mRNA cleavage and poly 97.7 0.025 5.4E-07 53.5 22.5 175 189-377 347-527 (656)
146 KOG1914 mRNA cleavage and poly 97.7 0.048 1E-06 51.6 27.0 127 272-402 349-480 (656)
147 KOG4162 Predicted calmodulin-b 97.7 0.03 6.5E-07 55.1 23.7 212 130-354 316-542 (799)
148 PF09976 TPR_21: Tetratricopep 97.7 0.0057 1.2E-07 49.0 16.2 125 175-315 14-143 (145)
149 cd00189 TPR Tetratricopeptide 97.6 0.0018 3.9E-08 46.6 11.7 94 293-388 3-96 (100)
150 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0033 7.3E-08 48.1 13.5 102 139-249 4-106 (119)
151 PF05843 Suf: Suppressor of fo 97.6 0.0022 4.7E-08 57.6 14.0 128 139-282 3-135 (280)
152 PRK10866 outer membrane biogen 97.6 0.044 9.6E-07 48.0 22.7 184 172-388 31-240 (243)
153 PF04840 Vps16_C: Vps16, C-ter 97.6 0.058 1.3E-06 49.2 23.7 111 255-386 178-288 (319)
154 PF05843 Suf: Suppressor of fo 97.5 0.0035 7.6E-08 56.3 14.3 144 212-369 2-149 (280)
155 cd00189 TPR Tetratricopeptide 97.5 0.0032 6.9E-08 45.3 11.6 92 142-247 5-96 (100)
156 KOG0624 dsRNA-activated protei 97.5 0.075 1.6E-06 47.6 25.6 270 107-397 44-344 (504)
157 PF14938 SNAP: Soluble NSF att 97.4 0.01 2.2E-07 53.4 16.2 26 175-200 37-62 (282)
158 PRK02603 photosystem I assembl 97.4 0.025 5.3E-07 46.8 16.7 88 255-343 36-124 (172)
159 PLN03088 SGT1, suppressor of 97.4 0.0058 1.3E-07 57.0 14.0 101 109-218 10-110 (356)
160 PRK02603 photosystem I assembl 97.3 0.028 6E-07 46.4 16.4 89 173-272 35-124 (172)
161 PF12895 Apc3: Anaphase-promot 97.3 0.00052 1.1E-08 49.2 5.2 81 303-385 2-83 (84)
162 PF12688 TPR_5: Tetratrico pep 97.3 0.017 3.8E-07 44.2 13.6 105 297-406 8-118 (120)
163 PF12895 Apc3: Anaphase-promot 97.2 0.0011 2.4E-08 47.4 6.1 82 267-350 2-83 (84)
164 PF14938 SNAP: Soluble NSF att 97.2 0.17 3.6E-06 45.6 22.2 152 214-388 97-265 (282)
165 CHL00033 ycf3 photosystem I as 97.2 0.013 2.9E-07 48.1 13.0 102 117-222 15-117 (168)
166 PF14559 TPR_19: Tetratricopep 97.2 0.002 4.4E-08 43.8 6.7 64 148-218 2-65 (68)
167 KOG1127 TPR repeat-containing 97.1 0.097 2.1E-06 53.2 20.0 216 116-352 473-698 (1238)
168 PF12921 ATP13: Mitochondrial 97.1 0.0099 2.2E-07 46.0 10.6 87 210-304 1-102 (126)
169 KOG0548 Molecular co-chaperone 97.1 0.27 5.9E-06 46.6 24.4 103 110-221 11-114 (539)
170 PLN03088 SGT1, suppressor of 97.1 0.017 3.6E-07 53.9 14.2 101 145-261 10-110 (356)
171 PRK10866 outer membrane biogen 97.1 0.17 3.8E-06 44.3 20.4 185 143-352 38-239 (243)
172 PF12921 ATP13: Mitochondrial 97.1 0.012 2.6E-07 45.5 10.8 52 320-371 47-99 (126)
173 COG4700 Uncharacterized protei 97.1 0.06 1.3E-06 43.9 14.8 132 89-226 77-208 (251)
174 PRK15363 pathogenicity island 97.0 0.076 1.7E-06 42.4 15.2 86 300-387 45-130 (157)
175 PF04840 Vps16_C: Vps16, C-ter 97.0 0.24 5.3E-06 45.1 22.4 110 212-350 178-287 (319)
176 KOG3617 WD40 and TPR repeat-co 97.0 0.1 2.3E-06 52.0 19.0 71 113-197 812-882 (1416)
177 PF13525 YfiO: Outer membrane 97.0 0.17 3.7E-06 43.1 18.8 185 179-380 11-198 (203)
178 CHL00033 ycf3 photosystem I as 97.0 0.036 7.9E-07 45.5 14.2 116 153-279 15-138 (168)
179 PRK10153 DNA-binding transcrip 96.9 0.077 1.7E-06 51.9 17.1 139 102-257 338-489 (517)
180 KOG0548 Molecular co-chaperone 96.9 0.43 9.4E-06 45.4 22.4 229 140-390 227-456 (539)
181 PRK10153 DNA-binding transcrip 96.9 0.12 2.6E-06 50.6 18.3 62 254-318 420-481 (517)
182 PF14559 TPR_19: Tetratricopep 96.9 0.005 1.1E-07 41.8 6.5 50 303-353 4-53 (68)
183 PF13432 TPR_16: Tetratricopep 96.9 0.0066 1.4E-07 40.8 7.0 57 144-202 4-60 (65)
184 KOG2796 Uncharacterized conser 96.8 0.25 5.4E-06 42.7 17.5 140 214-365 180-324 (366)
185 PRK15363 pathogenicity island 96.8 0.047 1E-06 43.6 12.0 98 137-248 35-132 (157)
186 KOG1127 TPR repeat-containing 96.8 0.092 2E-06 53.4 16.4 166 211-389 492-659 (1238)
187 KOG0624 dsRNA-activated protei 96.7 0.42 9E-06 43.0 24.0 247 87-354 91-370 (504)
188 PF12688 TPR_5: Tetratrico pep 96.7 0.18 3.8E-06 38.7 14.6 91 219-317 9-102 (120)
189 PF03704 BTAD: Bacterial trans 96.6 0.018 3.9E-07 46.1 9.2 71 292-363 64-139 (146)
190 PF03704 BTAD: Bacterial trans 96.6 0.064 1.4E-06 42.8 12.3 73 174-258 63-140 (146)
191 PRK10803 tol-pal system protei 96.6 0.054 1.2E-06 47.9 12.6 96 292-389 145-246 (263)
192 PF13432 TPR_16: Tetratricopep 96.5 0.017 3.6E-07 38.8 7.3 54 299-353 6-59 (65)
193 KOG0553 TPR repeat-containing 96.4 0.039 8.5E-07 48.4 10.3 101 112-221 92-192 (304)
194 KOG2041 WD40 repeat protein [G 96.4 0.58 1.2E-05 46.1 18.7 95 93-197 684-784 (1189)
195 COG4700 Uncharacterized protei 96.4 0.44 9.4E-06 39.1 19.9 164 101-280 56-219 (251)
196 PF13414 TPR_11: TPR repeat; P 96.3 0.018 4E-07 39.1 6.5 65 136-202 2-67 (69)
197 COG4235 Cytochrome c biogenesi 96.3 0.16 3.5E-06 44.8 13.6 125 89-222 143-271 (287)
198 PF13414 TPR_11: TPR repeat; P 96.3 0.025 5.5E-07 38.4 7.2 63 325-388 3-66 (69)
199 KOG3941 Intermediate in Toll s 96.3 0.037 8E-07 48.1 9.4 106 251-376 64-174 (406)
200 PF13170 DUF4003: Protein of u 96.3 0.8 1.7E-05 41.3 20.5 158 189-354 78-250 (297)
201 KOG2280 Vacuolar assembly/sort 96.3 1.4 3E-05 43.9 21.0 262 99-384 505-794 (829)
202 PF10300 DUF3808: Protein of u 96.2 0.5 1.1E-05 45.8 18.0 105 91-200 180-294 (468)
203 PRK10803 tol-pal system protei 96.2 0.13 2.8E-06 45.5 12.6 104 137-249 143-247 (263)
204 KOG3941 Intermediate in Toll s 96.2 0.088 1.9E-06 45.8 10.9 88 209-305 65-173 (406)
205 PF04053 Coatomer_WDAD: Coatom 96.1 0.37 8.1E-06 46.1 16.3 131 174-349 296-426 (443)
206 PF09205 DUF1955: Domain of un 96.1 0.43 9.4E-06 36.7 14.1 135 235-392 18-152 (161)
207 COG4235 Cytochrome c biogenesi 96.0 0.43 9.4E-06 42.2 14.8 102 171-282 154-255 (287)
208 PF13371 TPR_9: Tetratricopept 96.0 0.055 1.2E-06 37.2 7.7 56 145-202 3-58 (73)
209 KOG0553 TPR repeat-containing 96.0 0.13 2.7E-06 45.4 11.0 101 145-262 89-190 (304)
210 smart00299 CLH Clathrin heavy 95.9 0.63 1.4E-05 36.7 16.1 44 178-225 12-55 (140)
211 PF08631 SPO22: Meiosis protei 95.9 1.2 2.7E-05 39.9 23.9 228 149-385 5-271 (278)
212 PF13424 TPR_12: Tetratricopep 95.9 0.03 6.5E-07 39.2 6.0 60 327-386 7-72 (78)
213 PF13281 DUF4071: Domain of un 95.9 1.5 3.2E-05 40.7 20.4 86 172-265 140-228 (374)
214 KOG2796 Uncharacterized conser 95.9 1.1 2.3E-05 39.0 16.3 144 174-332 178-326 (366)
215 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.27 5.8E-06 46.3 13.4 62 290-353 75-140 (453)
216 PF13525 YfiO: Outer membrane 95.8 0.99 2.1E-05 38.3 17.7 175 145-344 13-197 (203)
217 PF07035 Mic1: Colon cancer-as 95.8 0.81 1.8E-05 37.2 16.0 139 235-390 10-150 (167)
218 KOG1538 Uncharacterized conser 95.8 2.2 4.9E-05 41.8 19.7 92 289-391 746-848 (1081)
219 COG5107 RNA14 Pre-mRNA 3'-end 95.7 0.64 1.4E-05 43.4 14.8 146 211-371 397-546 (660)
220 PF13170 DUF4003: Protein of u 95.7 1.5 3.4E-05 39.5 20.9 153 235-389 78-250 (297)
221 PF13371 TPR_9: Tetratricopept 95.7 0.039 8.4E-07 38.0 5.8 59 108-168 2-60 (73)
222 PF04053 Coatomer_WDAD: Coatom 95.7 0.91 2E-05 43.5 16.6 158 181-386 269-428 (443)
223 PF13424 TPR_12: Tetratricopep 95.5 0.048 1.1E-06 38.1 6.0 65 137-201 5-74 (78)
224 KOG1130 Predicted G-alpha GTPa 95.5 0.27 5.8E-06 45.3 11.6 279 108-388 24-343 (639)
225 PF13281 DUF4071: Domain of un 95.2 2.6 5.7E-05 39.1 20.4 167 215-392 145-337 (374)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.77 1.7E-05 43.3 13.8 67 135-201 73-140 (453)
227 smart00299 CLH Clathrin heavy 94.9 1.5 3.2E-05 34.6 16.1 132 99-266 5-137 (140)
228 KOG2041 WD40 repeat protein [G 94.9 4.5 9.7E-05 40.2 21.2 22 261-282 930-951 (1189)
229 COG4105 ComL DNA uptake lipopr 94.7 2.6 5.7E-05 36.6 23.1 194 172-394 34-237 (254)
230 KOG2280 Vacuolar assembly/sort 94.6 5.6 0.00012 39.9 20.0 261 103-387 439-771 (829)
231 COG1729 Uncharacterized protei 94.3 0.9 2E-05 39.7 11.4 98 256-354 144-244 (262)
232 KOG1538 Uncharacterized conser 94.2 2.5 5.3E-05 41.5 14.9 219 102-354 599-846 (1081)
233 PRK15331 chaperone protein Sic 94.2 0.61 1.3E-05 37.6 9.4 86 265-353 48-133 (165)
234 COG3629 DnrI DNA-binding trans 94.0 0.72 1.6E-05 40.9 10.3 84 137-222 153-238 (280)
235 PF09613 HrpB1_HrpK: Bacterial 93.9 2.7 6E-05 33.7 13.4 83 137-226 7-92 (160)
236 PF09613 HrpB1_HrpK: Bacterial 93.8 2.8 6.1E-05 33.7 12.4 110 264-381 20-130 (160)
237 KOG1585 Protein required for f 93.8 4 8.7E-05 35.2 14.1 209 137-384 31-251 (308)
238 KOG2114 Vacuolar assembly/sort 93.7 2.6 5.6E-05 42.6 14.4 180 136-351 333-516 (933)
239 PF09205 DUF1955: Domain of un 93.7 2.6 5.6E-05 32.6 14.6 121 266-408 14-134 (161)
240 PF10602 RPN7: 26S proteasome 93.6 3.5 7.6E-05 34.1 13.3 99 173-282 36-141 (177)
241 KOG2610 Uncharacterized conser 93.6 5.4 0.00012 36.1 15.2 158 147-315 113-272 (491)
242 COG3118 Thioredoxin domain-con 93.6 5 0.00011 35.6 15.2 143 146-304 143-286 (304)
243 PF04184 ST7: ST7 protein; In 93.6 7.2 0.00016 37.4 16.7 78 215-301 263-342 (539)
244 PF08631 SPO22: Meiosis protei 93.6 5.3 0.00011 35.8 26.1 225 112-352 4-273 (278)
245 COG3898 Uncharacterized membra 93.5 6.2 0.00014 36.5 24.2 252 112-389 131-392 (531)
246 PF13929 mRNA_stabil: mRNA sta 93.4 5.4 0.00012 35.4 16.3 62 285-346 197-259 (292)
247 COG3629 DnrI DNA-binding trans 93.3 1.3 2.8E-05 39.3 10.7 76 293-369 156-236 (280)
248 PRK15331 chaperone protein Sic 93.1 1.1 2.4E-05 36.1 9.1 88 146-247 46-133 (165)
249 COG4649 Uncharacterized protei 93.1 4.1 8.9E-05 33.2 14.8 139 136-286 58-199 (221)
250 KOG2610 Uncharacterized conser 93.0 6.9 0.00015 35.5 15.4 153 185-351 115-273 (491)
251 PF07079 DUF1347: Protein of u 92.9 5.6 0.00012 37.5 14.4 134 235-372 22-179 (549)
252 PF13512 TPR_18: Tetratricopep 92.7 1.7 3.7E-05 34.2 9.5 53 302-354 22-76 (142)
253 PF13929 mRNA_stabil: mRNA sta 92.6 7 0.00015 34.7 16.4 149 176-335 134-288 (292)
254 KOG1920 IkappaB kinase complex 92.6 16 0.00035 38.8 22.8 90 251-353 932-1027(1265)
255 KOG2114 Vacuolar assembly/sort 92.5 6.9 0.00015 39.8 15.4 178 102-316 335-516 (933)
256 PF04184 ST7: ST7 protein; In 92.4 11 0.00023 36.2 20.4 79 258-336 263-342 (539)
257 KOG4555 TPR repeat-containing 92.3 4 8.6E-05 31.5 10.6 54 146-201 52-105 (175)
258 PRK11906 transcriptional regul 92.1 11 0.00024 35.9 16.5 160 105-280 257-433 (458)
259 KOG4555 TPR repeat-containing 92.1 4.5 9.7E-05 31.3 11.7 90 181-282 51-143 (175)
260 KOG0543 FKBP-type peptidyl-pro 92.1 7.7 0.00017 36.0 14.2 125 262-389 216-355 (397)
261 KOG1130 Predicted G-alpha GTPa 92.0 2.1 4.6E-05 39.6 10.5 262 137-407 15-328 (639)
262 PF10300 DUF3808: Protein of u 92.0 13 0.00028 36.2 22.6 158 145-317 196-374 (468)
263 PF13428 TPR_14: Tetratricopep 91.7 0.68 1.5E-05 28.1 5.1 27 363-389 4-30 (44)
264 PF07035 Mic1: Colon cancer-as 91.5 6.6 0.00014 32.0 15.6 133 193-353 14-148 (167)
265 PF13512 TPR_18: Tetratricopep 91.5 5.8 0.00013 31.3 11.2 79 326-405 12-93 (142)
266 PRK09687 putative lyase; Provi 91.4 10 0.00022 34.0 29.0 240 135-406 35-279 (280)
267 PF10602 RPN7: 26S proteasome 91.2 6 0.00013 32.7 11.8 97 291-387 37-140 (177)
268 COG1729 Uncharacterized protei 91.2 6.4 0.00014 34.5 12.2 104 103-212 144-249 (262)
269 KOG4570 Uncharacterized conser 91.1 2.9 6.4E-05 37.3 10.0 105 285-391 59-166 (418)
270 cd00923 Cyt_c_Oxidase_Va Cytoc 91.0 2 4.3E-05 31.1 7.3 62 235-298 23-84 (103)
271 PF13428 TPR_14: Tetratricopep 90.9 0.78 1.7E-05 27.8 4.8 26 176-201 4-29 (44)
272 KOG1920 IkappaB kinase complex 90.8 24 0.00052 37.7 17.5 116 208-352 932-1053(1265)
273 KOG1585 Protein required for f 90.8 10 0.00022 32.8 17.6 171 150-348 71-250 (308)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 2.4 5.1E-05 30.7 7.4 50 152-202 22-71 (103)
275 KOG0276 Vesicle coat complex C 90.5 3 6.6E-05 40.6 10.3 98 185-315 649-746 (794)
276 PF02284 COX5A: Cytochrome c o 90.5 5.5 0.00012 29.2 10.0 61 236-298 27-87 (108)
277 PF13176 TPR_7: Tetratricopept 90.3 0.81 1.8E-05 26.3 4.3 23 328-350 2-24 (36)
278 KOG1550 Extracellular protein 90.2 18 0.00038 36.2 16.2 189 153-355 228-427 (552)
279 COG3118 Thioredoxin domain-con 90.2 13 0.00028 33.2 17.4 166 87-268 118-286 (304)
280 PF13176 TPR_7: Tetratricopept 90.1 0.75 1.6E-05 26.5 4.0 26 175-200 1-26 (36)
281 TIGR02561 HrpB1_HrpK type III 90.0 8.2 0.00018 30.6 12.8 63 138-202 8-73 (153)
282 KOG0543 FKBP-type peptidyl-pro 89.5 7.1 0.00015 36.3 11.5 125 109-247 216-354 (397)
283 COG1747 Uncharacterized N-term 89.3 22 0.00047 34.4 21.1 180 134-333 63-247 (711)
284 PF02259 FAT: FAT domain; Int 89.3 18 0.00039 33.4 23.9 53 108-165 5-57 (352)
285 KOG4570 Uncharacterized conser 89.0 4.4 9.5E-05 36.3 9.4 104 247-354 57-164 (418)
286 PF13762 MNE1: Mitochondrial s 88.7 11 0.00023 29.9 11.2 93 245-337 28-127 (145)
287 KOG0550 Molecular chaperone (D 88.6 21 0.00046 33.4 19.6 272 113-406 61-369 (486)
288 KOG1550 Extracellular protein 88.5 29 0.00062 34.7 17.5 180 189-392 228-429 (552)
289 PRK11906 transcriptional regul 88.4 11 0.00024 35.9 12.2 117 115-246 318-434 (458)
290 PF02284 COX5A: Cytochrome c o 87.7 9.1 0.0002 28.1 9.9 45 310-354 30-74 (108)
291 COG1747 Uncharacterized N-term 87.6 28 0.00061 33.6 23.3 63 172-248 65-127 (711)
292 COG4649 Uncharacterized protei 87.3 15 0.00032 30.1 15.6 137 254-392 59-200 (221)
293 COG5107 RNA14 Pre-mRNA 3'-end 87.1 28 0.00061 33.1 30.1 96 87-187 27-123 (660)
294 TIGR02561 HrpB1_HrpK type III 86.9 14 0.0003 29.4 11.9 53 266-320 22-74 (153)
295 PF11207 DUF2989: Protein of u 86.6 15 0.00033 30.8 10.8 75 149-226 119-193 (203)
296 KOG0276 Vesicle coat complex C 86.0 8.8 0.00019 37.6 10.2 131 175-350 616-746 (794)
297 PF11207 DUF2989: Protein of u 85.8 11 0.00023 31.7 9.6 72 271-344 123-197 (203)
298 KOG0550 Molecular chaperone (D 85.3 33 0.00072 32.2 18.4 157 110-282 178-349 (486)
299 PF13934 ELYS: Nuclear pore co 84.6 7.8 0.00017 33.5 8.8 94 86-187 89-186 (226)
300 COG0457 NrfG FOG: TPR repeat [ 84.6 22 0.00047 29.5 28.9 202 174-389 60-265 (291)
301 COG3898 Uncharacterized membra 84.6 35 0.00076 31.9 28.0 283 102-410 83-378 (531)
302 COG0457 NrfG FOG: TPR repeat [ 84.2 23 0.00049 29.4 27.4 226 114-354 36-265 (291)
303 PF13374 TPR_10: Tetratricopep 84.1 3.2 7E-05 24.2 4.6 26 327-352 4-29 (42)
304 KOG1941 Acetylcholine receptor 84.1 35 0.00076 31.5 12.6 168 106-281 88-273 (518)
305 PF13374 TPR_10: Tetratricopep 83.8 2.9 6.4E-05 24.4 4.3 30 173-202 2-31 (42)
306 COG5187 RPN7 26S proteasome re 83.7 32 0.00069 30.7 13.3 134 251-388 78-220 (412)
307 PF13431 TPR_17: Tetratricopep 83.1 2 4.4E-05 24.3 3.1 23 171-193 11-33 (34)
308 PF00515 TPR_1: Tetratricopept 82.6 4.3 9.3E-05 22.6 4.5 29 174-202 2-30 (34)
309 PF00637 Clathrin: Region in C 82.5 0.3 6.6E-06 38.7 -0.7 126 260-407 13-138 (143)
310 PF07163 Pex26: Pex26 protein; 82.2 19 0.00042 31.8 9.9 88 107-196 89-181 (309)
311 PF04097 Nic96: Nup93/Nic96; 81.9 63 0.0014 32.8 17.6 110 87-202 239-356 (613)
312 PF08311 Mad3_BUB1_I: Mad3/BUB 81.1 16 0.00034 28.3 8.4 65 131-198 60-124 (126)
313 TIGR02508 type_III_yscG type I 81.1 19 0.00042 26.4 8.2 51 298-354 47-97 (115)
314 COG4455 ImpE Protein of avirul 80.8 13 0.00027 31.7 8.0 78 141-221 5-82 (273)
315 KOG0991 Replication factor C, 80.7 37 0.0008 29.4 13.2 74 284-360 188-273 (333)
316 COG4455 ImpE Protein of avirul 80.6 15 0.00032 31.3 8.3 77 256-334 3-81 (273)
317 PF07719 TPR_2: Tetratricopept 80.6 5.5 0.00012 21.9 4.5 29 174-202 2-30 (34)
318 COG4105 ComL DNA uptake lipopr 80.0 41 0.00088 29.5 22.7 193 137-353 35-232 (254)
319 PRK09687 putative lyase; Provi 79.7 46 0.00099 29.9 29.5 233 100-371 36-278 (280)
320 PF00515 TPR_1: Tetratricopept 79.7 6.8 0.00015 21.7 4.6 27 327-353 3-29 (34)
321 PF10579 Rapsyn_N: Rapsyn N-te 79.3 7.6 0.00017 27.0 5.3 47 337-383 18-66 (80)
322 PF00637 Clathrin: Region in C 79.0 0.57 1.2E-05 37.1 -0.2 118 235-375 23-140 (143)
323 KOG4077 Cytochrome c oxidase, 78.2 18 0.00039 27.8 7.4 46 156-202 68-113 (149)
324 PF13174 TPR_6: Tetratricopept 77.4 5.4 0.00012 21.8 3.7 26 177-202 4-29 (33)
325 PF11846 DUF3366: Domain of un 76.8 9.3 0.0002 32.0 6.6 54 113-166 120-173 (193)
326 KOG1941 Acetylcholine receptor 76.8 63 0.0014 29.9 12.9 232 147-388 16-274 (518)
327 KOG2066 Vacuolar assembly/sort 76.4 96 0.0021 31.8 19.0 153 107-282 362-533 (846)
328 PF13431 TPR_17: Tetratricopep 76.4 3 6.6E-05 23.6 2.4 24 134-157 10-33 (34)
329 PF04097 Nic96: Nup93/Nic96; 75.9 62 0.0013 32.8 13.0 202 176-391 114-358 (613)
330 TIGR03504 FimV_Cterm FimV C-te 75.0 6.1 0.00013 24.0 3.5 26 366-391 5-30 (44)
331 KOG1464 COP9 signalosome, subu 74.8 60 0.0013 28.7 15.2 49 152-201 42-93 (440)
332 PF07719 TPR_2: Tetratricopept 74.7 11 0.00024 20.6 4.6 26 328-353 4-29 (34)
333 KOG0687 26S proteasome regulat 74.4 69 0.0015 29.2 14.2 137 248-388 64-209 (393)
334 COG3947 Response regulator con 74.2 66 0.0014 28.9 15.7 70 293-363 282-356 (361)
335 PF07721 TPR_4: Tetratricopept 73.4 5.9 0.00013 20.7 2.9 21 177-197 5-25 (26)
336 PF11846 DUF3366: Domain of un 72.4 22 0.00047 29.8 7.7 53 266-318 120-172 (193)
337 cd08819 CARD_MDA5_2 Caspase ac 72.4 27 0.00059 24.9 6.7 65 344-413 21-85 (88)
338 PF13181 TPR_8: Tetratricopept 72.1 14 0.0003 20.3 4.5 27 327-353 3-29 (34)
339 PF07163 Pex26: Pex26 protein; 72.1 68 0.0015 28.6 10.4 119 112-242 46-181 (309)
340 KOG4648 Uncharacterized conser 71.8 16 0.00035 33.3 6.8 81 262-353 105-186 (536)
341 PF11848 DUF3368: Domain of un 71.6 16 0.00036 22.6 5.0 31 372-402 14-45 (48)
342 TIGR03504 FimV_Cterm FimV C-te 71.4 11 0.00023 23.0 4.0 23 331-353 5-27 (44)
343 PF09454 Vps23_core: Vps23 cor 71.2 9.2 0.0002 25.6 4.0 46 362-407 10-55 (65)
344 PF13181 TPR_8: Tetratricopept 71.2 14 0.00029 20.4 4.4 29 174-202 2-30 (34)
345 PF11848 DUF3368: Domain of un 70.2 21 0.00045 22.1 5.2 29 303-331 15-43 (48)
346 KOG2297 Predicted translation 69.8 86 0.0019 28.3 15.8 73 171-268 163-237 (412)
347 COG5108 RPO41 Mitochondrial DN 69.7 27 0.00058 34.9 8.2 92 295-389 33-132 (1117)
348 TIGR02508 type_III_yscG type I 69.5 42 0.00092 24.7 7.9 85 235-328 21-105 (115)
349 PRK15180 Vi polysaccharide bio 69.4 95 0.0021 30.0 11.4 110 239-353 310-419 (831)
350 PHA02875 ankyrin repeat protei 68.7 1.1E+02 0.0024 29.1 14.2 213 112-361 10-231 (413)
351 PF10345 Cohesin_load: Cohesin 68.7 1.4E+02 0.003 30.3 21.2 198 171-388 28-253 (608)
352 KOG0687 26S proteasome regulat 68.4 95 0.0021 28.3 14.6 149 123-282 56-209 (393)
353 PF07575 Nucleopor_Nup85: Nup8 68.2 14 0.00031 37.0 6.5 29 172-200 404-432 (566)
354 PF11838 ERAP1_C: ERAP1-like C 66.6 1E+02 0.0022 28.0 19.5 110 270-384 146-261 (324)
355 PRK15180 Vi polysaccharide bio 65.9 45 0.00098 32.0 8.6 126 262-392 297-423 (831)
356 PF07079 DUF1347: Protein of u 65.5 1.3E+02 0.0029 28.9 23.5 265 112-390 17-328 (549)
357 COG5159 RPN6 26S proteasome re 65.1 1E+02 0.0023 27.6 11.0 127 217-351 9-151 (421)
358 PF13934 ELYS: Nuclear pore co 64.9 93 0.002 26.9 10.6 108 102-225 77-186 (226)
359 KOG0292 Vesicle coat complex C 64.8 59 0.0013 33.8 9.6 130 147-319 653-782 (1202)
360 PF11663 Toxin_YhaV: Toxin wit 64.4 7.4 0.00016 30.1 2.8 32 302-335 107-138 (140)
361 PF10579 Rapsyn_N: Rapsyn N-te 63.6 23 0.0005 24.7 4.8 47 149-195 18-65 (80)
362 cd08819 CARD_MDA5_2 Caspase ac 62.8 53 0.0012 23.4 6.6 61 156-226 21-81 (88)
363 PF11838 ERAP1_C: ERAP1-like C 62.1 1.2E+02 0.0027 27.4 23.5 145 235-386 146-305 (324)
364 KOG4521 Nuclear pore complex, 61.2 2.3E+02 0.0051 30.8 13.3 125 174-313 984-1125(1480)
365 PF10345 Cohesin_load: Cohesin 61.1 1.9E+02 0.0042 29.3 23.9 166 107-280 65-251 (608)
366 PF11663 Toxin_YhaV: Toxin wit 61.1 8.1 0.00018 29.9 2.5 32 337-370 107-138 (140)
367 PF06552 TOM20_plant: Plant sp 60.0 89 0.0019 25.9 8.3 65 152-223 50-125 (186)
368 PF14689 SPOB_a: Sensor_kinase 59.7 27 0.0006 23.0 4.6 24 365-388 28-51 (62)
369 smart00028 TPR Tetratricopepti 58.5 24 0.00051 18.0 3.8 28 175-202 3-30 (34)
370 PRK10564 maltose regulon perip 58.4 23 0.00049 31.8 5.2 43 286-328 252-295 (303)
371 PRK10564 maltose regulon perip 58.3 30 0.00064 31.1 5.9 45 206-258 251-296 (303)
372 KOG4567 GTPase-activating prot 58.2 63 0.0014 29.2 7.7 70 310-384 263-342 (370)
373 PF09477 Type_III_YscG: Bacter 57.9 77 0.0017 23.7 8.1 78 235-320 22-99 (116)
374 COG5108 RPO41 Mitochondrial DN 57.1 79 0.0017 31.8 8.8 92 259-353 33-131 (1117)
375 COG2909 MalT ATP-dependent tra 57.0 2.6E+02 0.0056 29.4 24.9 229 148-385 426-684 (894)
376 PRK14951 DNA polymerase III su 56.4 2.3E+02 0.0051 28.8 13.3 44 272-317 187-230 (618)
377 cd08326 CARD_CASP9 Caspase act 56.4 41 0.00089 23.8 5.3 38 373-413 43-80 (84)
378 COG5187 RPN7 26S proteasome re 56.2 1.5E+02 0.0033 26.6 9.6 68 324-391 114-186 (412)
379 COG0735 Fur Fe2+/Zn2+ uptake r 55.8 75 0.0016 25.2 7.4 8 345-352 40-47 (145)
380 COG0735 Fur Fe2+/Zn2+ uptake r 55.2 75 0.0016 25.2 7.3 61 346-407 7-68 (145)
381 PF09454 Vps23_core: Vps23 cor 55.1 25 0.00053 23.5 3.8 50 323-373 6-55 (65)
382 PF13762 MNE1: Mitochondrial s 54.7 1.1E+02 0.0023 24.4 12.7 84 292-375 41-130 (145)
383 smart00777 Mad3_BUB1_I Mad3/BU 53.8 1E+02 0.0022 23.8 9.0 74 119-198 51-124 (125)
384 cd00280 TRFH Telomeric Repeat 53.7 95 0.002 25.8 7.5 66 306-374 85-157 (200)
385 PRK08691 DNA polymerase III su 53.6 2.7E+02 0.0059 28.7 13.1 84 270-356 180-276 (709)
386 PF10366 Vps39_1: Vacuolar sor 53.5 88 0.0019 23.4 7.0 26 363-388 42-67 (108)
387 PF10366 Vps39_1: Vacuolar sor 53.3 83 0.0018 23.5 6.8 27 327-353 41-67 (108)
388 COG3947 Response regulator con 53.2 1.7E+02 0.0038 26.3 18.0 166 81-258 146-357 (361)
389 PRK07003 DNA polymerase III su 52.8 3E+02 0.0064 28.9 12.7 84 270-356 180-276 (830)
390 KOG1586 Protein required for f 52.8 1.6E+02 0.0034 25.7 12.6 28 336-363 165-192 (288)
391 PF14689 SPOB_a: Sensor_kinase 51.2 51 0.0011 21.7 4.8 46 189-247 6-51 (62)
392 PF10475 DUF2450: Protein of u 51.1 1.9E+02 0.0041 26.1 10.9 89 254-348 127-220 (291)
393 COG4785 NlpI Lipoprotein NlpI, 50.1 1.7E+02 0.0036 25.2 13.7 64 136-201 98-161 (297)
394 PF04762 IKI3: IKI3 family; I 50.1 3.6E+02 0.0078 29.1 18.4 60 107-166 700-762 (928)
395 COG2976 Uncharacterized protei 50.0 1.6E+02 0.0034 24.9 10.0 91 145-249 97-189 (207)
396 KOG0890 Protein kinase of the 49.8 3.7E+02 0.0081 31.9 13.4 149 178-349 1388-1542(2382)
397 PF11817 Foie-gras_1: Foie gra 49.3 90 0.0019 27.4 7.6 58 295-352 183-245 (247)
398 KOG2396 HAT (Half-A-TPR) repea 49.2 2.7E+02 0.0058 27.3 24.2 76 91-167 94-170 (568)
399 KOG0686 COP9 signalosome, subu 48.4 2.5E+02 0.0053 26.7 12.2 64 255-319 151-216 (466)
400 PF02259 FAT: FAT domain; Int 48.3 2.2E+02 0.0048 26.1 26.7 66 252-318 144-212 (352)
401 COG2178 Predicted RNA-binding 48.2 1.7E+02 0.0036 24.6 10.2 18 371-388 132-149 (204)
402 KOG4077 Cytochrome c oxidase, 47.8 1.3E+02 0.0028 23.3 10.2 42 348-389 72-113 (149)
403 PF09477 Type_III_YscG: Bacter 47.5 1.2E+02 0.0026 22.7 8.3 32 357-390 68-99 (116)
404 PF12862 Apc5: Anaphase-promot 46.7 76 0.0017 22.8 5.7 33 145-177 49-81 (94)
405 PRK11639 zinc uptake transcrip 46.7 1.2E+02 0.0026 24.8 7.4 59 284-343 20-78 (169)
406 COG4785 NlpI Lipoprotein NlpI, 46.6 1.9E+02 0.0041 24.9 16.8 179 208-405 95-282 (297)
407 PF12926 MOZART2: Mitotic-spin 46.5 1.1E+02 0.0023 21.9 8.4 63 210-282 9-71 (88)
408 cd00280 TRFH Telomeric Repeat 46.2 1.7E+02 0.0038 24.3 7.9 65 270-337 85-155 (200)
409 smart00638 LPD_N Lipoprotein N 45.3 3.3E+02 0.0072 27.3 21.0 201 189-406 291-506 (574)
410 PF11817 Foie-gras_1: Foie gra 45.3 1.4E+02 0.003 26.2 8.1 60 328-387 181-245 (247)
411 PF08870 DUF1832: Domain of un 45.2 66 0.0014 24.3 5.2 25 272-296 7-32 (113)
412 PRK14958 DNA polymerase III su 45.2 3.2E+02 0.0069 27.1 12.4 86 235-324 180-279 (509)
413 KOG0890 Protein kinase of the 44.1 6.3E+02 0.014 30.2 22.8 66 325-393 1670-1735(2382)
414 KOG2659 LisH motif-containing 44.0 2.1E+02 0.0046 24.7 10.3 65 251-318 23-92 (228)
415 KOG1114 Tripeptidyl peptidase 42.8 4.5E+02 0.0098 28.1 17.4 31 266-305 1159-1189(1304)
416 PF06552 TOM20_plant: Plant sp 42.4 2E+02 0.0043 23.9 10.2 81 189-282 51-135 (186)
417 PRK14956 DNA polymerase III su 41.5 3.5E+02 0.0077 26.5 11.3 101 235-360 182-283 (484)
418 KOG3364 Membrane protein invol 41.1 94 0.002 24.4 5.4 68 135-202 30-100 (149)
419 PF02847 MA3: MA3 domain; Int 41.1 1.1E+02 0.0024 22.7 6.1 24 294-317 6-29 (113)
420 KOG2422 Uncharacterized conser 41.1 3.8E+02 0.0082 26.8 11.2 136 144-280 349-492 (665)
421 PRK08691 DNA polymerase III su 40.2 4.4E+02 0.0096 27.3 12.1 85 236-324 181-279 (709)
422 PHA02875 ankyrin repeat protei 40.0 91 0.002 29.6 6.7 7 265-271 43-49 (413)
423 KOG2063 Vacuolar assembly/sort 39.8 4.9E+02 0.011 27.7 17.7 207 140-371 507-743 (877)
424 PRK10941 hypothetical protein; 39.6 2.8E+02 0.006 24.8 9.6 78 141-222 185-262 (269)
425 PRK10941 hypothetical protein; 39.5 2.8E+02 0.0061 24.8 10.8 78 328-407 184-264 (269)
426 PRK09857 putative transposase; 39.2 2.8E+02 0.0061 25.1 9.2 24 368-391 248-271 (292)
427 PRK14958 DNA polymerase III su 39.1 4E+02 0.0086 26.4 13.4 87 271-360 181-280 (509)
428 KOG4648 Uncharacterized conser 38.7 1.8E+02 0.0039 26.9 7.6 83 108-201 104-186 (536)
429 COG2909 MalT ATP-dependent tra 38.5 5E+02 0.011 27.4 21.5 199 184-391 426-649 (894)
430 PF09090 MIF4G_like_2: MIF4G l 38.4 2.8E+02 0.006 24.4 11.4 54 252-305 9-65 (253)
431 PF11768 DUF3312: Protein of u 38.4 4.1E+02 0.0089 26.4 11.5 59 258-319 412-473 (545)
432 PF09868 DUF2095: Uncharacteri 38.1 1.4E+02 0.0031 22.5 5.7 42 366-407 67-108 (128)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 1.9E+02 0.0041 22.3 9.3 43 308-350 81-124 (126)
434 PRK09462 fur ferric uptake reg 37.8 1.5E+02 0.0033 23.5 6.6 57 284-341 11-68 (148)
435 PF12862 Apc5: Anaphase-promot 37.8 1.5E+02 0.0033 21.2 8.2 21 369-389 50-70 (94)
436 KOG2062 26S proteasome regulat 37.4 4.9E+02 0.011 27.0 15.1 231 153-405 39-287 (929)
437 PRK14951 DNA polymerase III su 37.0 4.7E+02 0.01 26.7 11.5 84 235-322 185-282 (618)
438 smart00544 MA3 Domain in DAP-5 36.9 1.7E+02 0.0038 21.6 9.8 60 293-354 5-66 (113)
439 COG0790 FOG: TPR repeat, SEL1 36.8 3.1E+02 0.0066 24.4 19.0 17 235-251 129-145 (292)
440 cd07153 Fur_like Ferric uptake 36.6 97 0.0021 23.2 5.2 47 296-342 6-52 (116)
441 KOG4507 Uncharacterized conser 36.4 3.6E+02 0.0078 27.1 9.6 154 251-407 568-723 (886)
442 KOG2297 Predicted translation 36.4 3.4E+02 0.0073 24.8 13.8 20 291-310 322-341 (412)
443 PLN03025 replication factor C 36.3 3.4E+02 0.0073 24.8 15.6 99 236-361 161-260 (319)
444 PF09868 DUF2095: Uncharacteri 36.2 1.7E+02 0.0036 22.1 5.8 38 218-264 68-105 (128)
445 PF07064 RIC1: RIC1; InterPro 36.0 3.1E+02 0.0067 24.3 15.3 60 259-318 184-248 (258)
446 KOG3807 Predicted membrane pro 36.0 3.5E+02 0.0076 24.9 13.7 55 263-317 284-338 (556)
447 KOG0991 Replication factor C, 35.4 3.1E+02 0.0067 24.0 16.5 138 179-337 136-284 (333)
448 KOG1258 mRNA processing protei 35.1 4.7E+02 0.01 26.1 20.2 183 172-374 296-489 (577)
449 PRK13800 putative oxidoreducta 34.8 6.1E+02 0.013 27.3 28.1 128 252-390 754-882 (897)
450 PF08542 Rep_fac_C: Replicatio 34.6 1.6E+02 0.0035 20.6 6.0 48 324-373 4-51 (89)
451 PF03745 DUF309: Domain of unk 34.4 1.4E+02 0.003 19.7 5.7 17 302-318 11-27 (62)
452 PF09986 DUF2225: Uncharacteri 34.4 3E+02 0.0064 23.6 11.2 78 208-285 113-196 (214)
453 COG4003 Uncharacterized protei 33.9 1.4E+02 0.003 20.9 4.8 29 366-394 37-65 (98)
454 PF07575 Nucleopor_Nup85: Nup8 33.4 1.3E+02 0.0028 30.2 6.8 20 372-391 507-526 (566)
455 PF04762 IKI3: IKI3 family; I 33.1 6.6E+02 0.014 27.2 12.4 28 292-319 814-843 (928)
456 PF02847 MA3: MA3 domain; Int 33.1 2E+02 0.0044 21.2 7.3 63 257-322 5-69 (113)
457 PRK09857 putative transposase; 33.0 3.7E+02 0.0081 24.3 10.3 64 257-322 209-272 (292)
458 PF12926 MOZART2: Mitotic-spin 32.7 1.8E+02 0.004 20.7 8.0 44 346-389 29-72 (88)
459 PRK07764 DNA polymerase III su 32.5 6.4E+02 0.014 26.9 12.7 31 326-357 249-279 (824)
460 PRK11619 lytic murein transgly 32.2 5.8E+02 0.012 26.2 30.4 279 87-388 81-374 (644)
461 KOG2659 LisH motif-containing 31.6 3.4E+02 0.0074 23.4 9.6 69 133-201 22-92 (228)
462 PF01475 FUR: Ferric uptake re 31.3 96 0.0021 23.5 4.4 45 295-339 12-56 (120)
463 TIGR03581 EF_0839 conserved hy 31.0 1.4E+02 0.0029 25.6 5.2 46 342-387 189-235 (236)
464 PRK14962 DNA polymerase III su 31.0 5.2E+02 0.011 25.3 17.1 45 236-282 179-224 (472)
465 COG2405 Predicted nucleic acid 30.7 1.1E+02 0.0024 24.0 4.4 36 369-404 118-154 (157)
466 KOG4234 TPR repeat-containing 30.5 3.4E+02 0.0074 23.1 9.4 87 183-282 105-196 (271)
467 cd07920 Pumilio Pumilio-family 30.4 4.1E+02 0.009 24.0 13.7 24 104-127 21-44 (322)
468 smart00386 HAT HAT (Half-A-TPR 30.4 89 0.0019 16.3 3.7 15 375-389 2-16 (33)
469 PF11768 DUF3312: Protein of u 30.3 5.6E+02 0.012 25.5 12.1 62 102-166 409-473 (545)
470 cd07153 Fur_like Ferric uptake 30.0 1.2E+02 0.0027 22.6 4.8 47 331-377 6-52 (116)
471 PF13877 RPAP3_C: Potential Mo 29.6 2.1E+02 0.0046 20.4 7.7 60 136-199 32-91 (94)
472 PRK11639 zinc uptake transcrip 29.6 3.1E+02 0.0068 22.4 7.6 63 243-307 15-77 (169)
473 PRK14963 DNA polymerase III su 29.6 5.7E+02 0.012 25.3 13.1 83 271-356 178-272 (504)
474 KOG1114 Tripeptidyl peptidase 29.4 7.4E+02 0.016 26.6 14.4 129 189-351 1163-1292(1304)
475 KOG4567 GTPase-activating prot 29.3 4E+02 0.0087 24.3 8.1 43 275-318 264-306 (370)
476 COG2976 Uncharacterized protei 29.1 3.6E+02 0.0077 22.8 13.1 90 296-390 95-189 (207)
477 PF08314 Sec39: Secretory path 28.9 6.8E+02 0.015 26.1 14.2 166 208-389 429-625 (715)
478 PF15297 CKAP2_C: Cytoskeleton 28.8 4.8E+02 0.01 24.2 9.3 63 307-371 120-186 (353)
479 KOG0686 COP9 signalosome, subu 28.8 5.2E+02 0.011 24.7 15.6 176 173-368 150-352 (466)
480 PRK09462 fur ferric uptake reg 28.6 3E+02 0.0064 21.8 7.2 35 341-375 33-67 (148)
481 COG4003 Uncharacterized protei 28.2 2.2E+02 0.0047 20.0 5.1 35 217-260 37-71 (98)
482 PF14669 Asp_Glu_race_2: Putat 28.1 3.7E+02 0.008 22.7 16.2 174 206-385 3-206 (233)
483 PRK07003 DNA polymerase III su 27.8 7.4E+02 0.016 26.1 14.0 83 117-202 180-274 (830)
484 cd00245 Glm_e Coenzyme B12-dep 27.7 1.9E+02 0.0042 27.7 6.4 158 150-325 24-202 (428)
485 PRK14963 DNA polymerase III su 27.6 6.1E+02 0.013 25.1 11.4 82 235-320 177-271 (504)
486 KOG2396 HAT (Half-A-TPR) repea 27.5 6E+02 0.013 25.0 21.3 89 294-385 464-555 (568)
487 COG2178 Predicted RNA-binding 27.2 3.8E+02 0.0083 22.6 10.5 16 338-353 134-149 (204)
488 KOG2066 Vacuolar assembly/sort 27.1 7.4E+02 0.016 25.9 16.0 24 330-353 510-533 (846)
489 TIGR01914 cas_Csa4 CRISPR-asso 27.1 4.2E+02 0.009 24.4 7.9 72 178-265 279-352 (354)
490 TIGR02270 conserved hypothetic 26.9 5.7E+02 0.012 24.5 26.5 236 108-388 45-280 (410)
491 PF04090 RNA_pol_I_TF: RNA pol 26.5 3.4E+02 0.0074 22.9 7.0 64 254-318 41-104 (199)
492 PRK06645 DNA polymerase III su 26.3 6.5E+02 0.014 25.0 11.4 87 269-358 188-290 (507)
493 PF02184 HAT: HAT (Half-A-TPR) 26.3 97 0.0021 17.4 2.5 24 188-216 2-25 (32)
494 PF12796 Ank_2: Ankyrin repeat 26.3 1.8E+02 0.0039 20.1 4.9 14 265-278 5-18 (89)
495 PF07064 RIC1: RIC1; InterPro 26.1 4.6E+02 0.01 23.2 16.8 59 295-353 184-248 (258)
496 PF01475 FUR: Ferric uptake re 25.8 1.1E+02 0.0024 23.1 3.8 41 366-406 13-54 (120)
497 PRK13184 pknD serine/threonine 25.5 8.8E+02 0.019 26.2 24.3 92 106-202 480-581 (932)
498 PRK14956 DNA polymerase III su 25.2 6.6E+02 0.014 24.7 13.4 100 120-255 185-284 (484)
499 PF06855 DUF1250: Protein of u 25.2 83 0.0018 19.2 2.4 38 126-163 4-41 (46)
500 PRK14971 DNA polymerase III su 25.1 7.5E+02 0.016 25.3 12.3 19 374-392 261-279 (614)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-49 Score=405.00 Aligned_cols=297 Identities=15% Similarity=0.172 Sum_probs=177.1
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT 178 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 178 (417)
|+..+|+.++.+|++.|+.+.|.++|+.|. ..|+.||..+|+.+|.+|++.|++++|.++|+.|.+.+.. ||..+|+.
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-PD~vTYns 547 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNA 547 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 344455555555555555555555555552 3444555555555555555555555555555555554444 55555555
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
||.+|++.|++++|.++|++|...+ .|+.||..+|+++|.+|++.|+ +++|.++|++|.+.|+.|+..+|+
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~-~gi~PD~vTynaLI~ay~k~G~--------ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAET-HPIDPDHITVGALMKACANAGQ--------VDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHcCCCCChHHHH
Confidence 5555555555555555555554310 1455555555555555555555 566666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN 338 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 338 (417)
++|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|++||.+|++.
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 666666666666666666666665 5666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 339 GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 339 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|...|+ ||..||+.+|.+|++.
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 66666666666666666666666666666666666666666666666666666 6666666666666655
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-49 Score=402.78 Aligned_cols=296 Identities=17% Similarity=0.267 Sum_probs=288.0
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT 178 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 178 (417)
|+..+|+.++.+|++.|+++.|.++|+.|. +.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|.. ||..+|++
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 777899999999999999999999999994 7889999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH--CCCCCCHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--DGIEPDIFS 256 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~ 256 (417)
||.+|++.|++++|.++|++|.+. |+.||..+|+.||.+|++.|+ +++|.++|++|.+ .|+.||..+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~---Gv~PD~vTYnsLI~a~~k~G~--------~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSK---NVKPDRVVFNALISACGQSGA--------VDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhcCCCCCcHHH
Confidence 999999999999999999999998 899999999999999999999 9999999999986 688999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA 336 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 336 (417)
|+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|+
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhhc
Q 014860 337 LNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDDF 408 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~~ 408 (417)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+ ||..+|+.||.+|++.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999873
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-45 Score=367.07 Aligned_cols=284 Identities=17% Similarity=0.206 Sum_probs=205.0
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHH-----------------------------------HHHH
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDAST-----------------------------------YHIM 143 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~~l 143 (417)
|+..+|+.++.+|++.|++++|+++|+.|. +.|+.||..+ |+.+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 455778888888888888888888888884 3444444444 4555
Q ss_pred HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh
Q 014860 144 TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS 223 (417)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~ 223 (417)
|.+|++.|++++|.++|+.|.+ +|..+||++|.+|++.|++++|.++|++|.+. |+.||..||++++.+|++
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS---GVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHh
Confidence 5556666666666666666543 56667777777777777777777777777665 677777777777777777
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc
Q 014860 224 RGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ 303 (417)
Q Consensus 224 ~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 303 (417)
.|+ +++|.+++.+|.+.|+.||..+|++||++|+++|++++|.++|++|.+ ||..+||+||.+|++.
T Consensus 338 ~g~--------~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 338 LAL--------LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNH 404 (697)
T ss_pred ccc--------hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHc
Confidence 777 777777777777777777777777777777777777777777777754 6777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 014860 304 GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKL 382 (417)
Q Consensus 304 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~ 382 (417)
|+.++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++|++|.+. |+.|+..+|+++|++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777777653 7777777777777777777777777777
Q ss_pred HHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 383 LKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 383 ~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
+++| ++ |+..+|++|+.+|...
T Consensus 485 ~~~~---~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 485 IRRA---PFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHC---CCCCCHHHHHHHHHHHHHc
Confidence 7665 34 6777777777777665
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6e-44 Score=360.42 Aligned_cols=287 Identities=16% Similarity=0.247 Sum_probs=194.1
Q ss_pred CCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860 100 PRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI 179 (417)
Q Consensus 100 ~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 179 (417)
+..+|+.++..+.+.|++++|+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.|.. ||..+|+.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence 3346777777777777777777777777555556677777777777777777777777777777777666 677777777
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC------
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD------ 253 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~------ 253 (417)
+.+|+++|++++|.++|++|.+ ||..+||++|.+|++.|+ +++|+++|++|.+.|+.||
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~-------~~~~t~n~li~~~~~~g~--------~~~A~~lf~~M~~~g~~p~~~t~~~ 229 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE-------RNLASWGTIIGGLVDAGN--------YREAFALFREMWEDGSDAEPRTFVV 229 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC-------CCeeeHHHHHHHHHHCcC--------HHHHHHHHHHHHHhCCCCChhhHHH
Confidence 7777777777777777777753 466777777777777777 7777777777765554443
Q ss_pred -----------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860 254 -----------------------------IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG 304 (417)
Q Consensus 254 -----------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 304 (417)
..+||+||++|+++|++++|.++|+.|.+ +|..+||+||.+|++.|
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHG 304 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCC
Confidence 44446666667777777766666666654 56666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------
Q 014860 305 RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP--------------------------- 357 (417)
Q Consensus 305 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------------------------- 357 (417)
+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666655555555555555555555555444432
Q ss_pred ----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 358 ----VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 358 ----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
||..+|++||.+|++.|+.++|.++|++|.+.|+ ||..||+.+|.+|++.
T Consensus 385 ~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 4666777777777777777777777777777777 7888888888777765
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-43 Score=365.25 Aligned_cols=301 Identities=14% Similarity=0.151 Sum_probs=196.0
Q ss_pred hHHHHHHhcC--CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860 89 TQFRCAVSEL--PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT 166 (417)
Q Consensus 89 ~~~~~~l~~~--p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 166 (417)
......+... |+..+||.++.+|++.|++++|+++|+.|. ..|+.||..||+.+|.+|++.|+++.+.+++..|.+.
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 3344555555 466899999999999999999999999995 6778999999999999888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 167 PSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 167 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
|.. ||..+||+||.+|+++|++++|.++|++|.. ||..+||++|.+|++.|+ .++|+++|++|.
T Consensus 318 g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d~~s~n~li~~~~~~g~--------~~~A~~lf~~M~ 381 (857)
T PLN03077 318 GFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------KDAVSWTAMISGYEKNGL--------PDKALETYALME 381 (857)
T ss_pred CCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCeeeHHHHHHHHHhCCC--------HHHHHHHHHHHH
Confidence 876 8888888888888888888888888877753 366667777777777776 666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 014860 247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK------- 319 (417)
Q Consensus 247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------- 319 (417)
+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.|+..+|++||.+|++.|++++|.++|++|.+.
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~ 460 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence 666666655555555554444444444444444444 344444444444444443333333333333333211
Q ss_pred -----------------------CC-------------------------------------------------------
Q 014860 320 -----------------------GF------------------------------------------------------- 321 (417)
Q Consensus 320 -----------------------g~------------------------------------------------------- 321 (417)
++
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 12
Q ss_pred ----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-HCC
Q 014860 322 ----------VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ-NKN 390 (417)
Q Consensus 322 ----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~ 390 (417)
.||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. +.|
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 233444555555566666666666666666666666666666666666666666666666666665 445
Q ss_pred C-CChhhHHHHHHHHHhh
Q 014860 391 L-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 391 ~-p~~~t~~~ll~~~~~~ 407 (417)
+ |+..+|+.++++|++.
T Consensus 621 i~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRA 638 (857)
T ss_pred CCCchHHHHHHHHHHHhC
Confidence 5 5666666666666655
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-42 Score=359.08 Aligned_cols=294 Identities=16% Similarity=0.158 Sum_probs=180.6
Q ss_pred HHHHhcC--CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860 92 RCAVSEL--PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 92 ~~~l~~~--p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (417)
.+.+... |+..+|+.++.+|++.|++++|+++|+.|. ..|+.||..||+.++++|+..++++.+.+++..|.+.|..
T Consensus 141 ~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~ 219 (857)
T PLN03077 141 WYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219 (857)
T ss_pred HHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC
Confidence 3444444 566899999999999999999999999995 5688899888887777777666666666666666666655
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
+|..+||+||.+|+++|++++|.++|++|.+ ||..+||+||.+|++.|+ .++|+++|++|.+.|
T Consensus 220 -~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~d~~s~n~li~~~~~~g~--------~~eAl~lf~~M~~~g 283 (857)
T PLN03077 220 -LDVDVVNALITMYVKCGDVVSARLVFDRMPR-------RDCISWNAMISGYFENGE--------CLEGLELFFTMRELS 283 (857)
T ss_pred -cccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------CCcchhHHHHHHHHhCCC--------HHHHHHHHHHHHHcC
Confidence 6666666666666666666666666666643 355555555555555555 555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 250 IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN 329 (417)
Q Consensus 250 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 329 (417)
+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+||+||.+|++.|++++|.++|++|. .||..+||
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n 358 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWT 358 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHH
Confidence 555555555555555555555555555555555 4555555555555555555555555555555553 23445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+ |+..+|+.||++|++.
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 55555555555555555555555555555555555555555555555555555555555555 4555555555555544
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=7.2e-19 Score=166.68 Aligned_cols=286 Identities=14% Similarity=0.140 Sum_probs=183.1
Q ss_pred ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHH
Q 014860 87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRH--DASTYHIMTRKLGAAKMYQEMDDVVNQM 163 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 163 (417)
....+.+.+...|+.. .+..+...+...|+++.|+.+++.+.......+ ....+..+...+...|++++|..+++.+
T Consensus 54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444556665555443 455566666777777777777777654332111 1245666677777777777777777777
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCCccchhhhhHHHHH
Q 014860 164 LATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGKNTYINHVYMETIR 239 (417)
Q Consensus 164 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~~~~~~~~~a~ 239 (417)
.+... .+..+++.++..|.+.|++++|.+.|+.+.+.. ..+. ...|..+...+...|+ .++|.
T Consensus 134 l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~ 200 (389)
T PRK11788 134 VDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG---GDSLRVEIAHFYCELAQQALARGD--------LDAAR 200 (389)
T ss_pred HcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHhCCC--------HHHHH
Confidence 66532 456677777777777777777777777776641 1111 1234456666667777 77777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 240 CLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 240 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +-.....+++.++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777776643 233456666667777777777777777777652 11112345667777777777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHHCCC
Q 014860 320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR---RGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~ 391 (417)
.|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.++++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 355555667777777777777777777776664 4677777766666554 4467777777777777665
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.7e-18 Score=164.11 Aligned_cols=278 Identities=13% Similarity=0.049 Sum_probs=232.4
Q ss_pred HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhC
Q 014860 110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG--TEALYNTIIYFFAEAR 187 (417)
Q Consensus 110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g 187 (417)
.+...|+++.|+..|..+.+.. +.+..++..+...+...|++++|..+++.+.+.+...+ ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3457789999999999997654 45677899999999999999999999999988654311 1356888999999999
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI----FSLNSMIKG 263 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~ 263 (417)
++++|..+|+++.+. .+.+..+++.++..+...|+ +++|.+.++.+.+.+..++. ..+..+...
T Consensus 122 ~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 122 LLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKD--------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred CHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 999999999999874 24567889999999999999 99999999999986533322 245567778
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEE 343 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 343 (417)
+.+.|++++|.+.|+++.+. . +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 190 ALARGDLDAARALLKKALAA-D-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhH-C-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 88999999999999999762 2 345668888899999999999999999999976433335678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860 344 TVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 344 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHhhh
Confidence 99999999886 467777788999999999999999999999876 4888889888877664
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=1.9e-16 Score=165.89 Aligned_cols=287 Identities=11% Similarity=0.050 Sum_probs=164.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
+..+...+...|++++|+.+++.+.+.. +.+...|..+...+...|++++|.+.++.+.+... .+...+..+..+|
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 645 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP--DSALALLLLADAY 645 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence 3444555555566666666665554322 34555555555555555566666555555554432 3344455555555
Q ss_pred HHhCCHHHHHHHHHHhHhCCCC------------------------------CCCCCHHHHHHHHHHHHhcCCccchhhh
Q 014860 184 AEARKLSRAVYVFKYMKNSRNL------------------------------ECRPSIRSYNILFTAFLSRGKNTYINHV 233 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~------------------------------g~~p~~~~~~~li~~~~~~g~~~~~~~~ 233 (417)
.+.|++++|..+|+.+.+.... ..+.+...+..+...+...|+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------- 718 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD------- 718 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC-------
Confidence 5555555555555555543100 012233444444444444554
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 234 YMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC 313 (417)
Q Consensus 234 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 313 (417)
+++|.+.|+++.+.+ |+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|...|++++|...|
T Consensus 719 -~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 719 -YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred -HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 555555555554432 3334444455555555555555555555544 12344555666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 014860 314 DEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLID 393 (417)
Q Consensus 314 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 393 (417)
+++.+.. +.+...++.+...+...|+ .+|+.+++++.+. .+-+..++..+...+...|++++|.++++++.+.+..+
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 6666543 2355566666666666666 5566666666654 12244456667777888899999999999998877668
Q ss_pred hhhHHHHHHHHHhhcC
Q 014860 394 GYTYTKLLDVLEDDFG 409 (417)
Q Consensus 394 ~~t~~~ll~~~~~~~~ 409 (417)
..++..+..++.+.+.
T Consensus 871 ~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 871 AAIRYHLALALLATGR 886 (899)
T ss_pred hHHHHHHHHHHHHcCC
Confidence 8888888888887633
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=2.9e-16 Score=164.49 Aligned_cols=283 Identities=12% Similarity=0.063 Sum_probs=191.8
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF 182 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 182 (417)
.+..+...+.+.|+.++|+..|+.+.+.. +.+...+..+...+...|++++|.++++.+.+... .+...|..+..+
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~ 610 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP--DSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 34445555555666666666666654332 34455556666666666666666666666655433 455666777777
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK 262 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 262 (417)
|.+.|++++|...|+.+.+. .+.+...+..+...+...|+ +++|..+|+++.+.. +.+..++..+..
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKN--------YAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 77777777777777776654 13345566667777777777 777777777766543 334666777777
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
.+...|++++|.++++.+.+. .+.+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++.+.|+.+
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 777777777777777777652 23456667777777778888888888888777653 44466777778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
+|.+.++++.+. .+.+...+..+...|...|+.++|.++|+++.+....+...+..+...+.+.
T Consensus 754 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 754 EAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 888888887765 3456677788888888888888888888888887655777777777666554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=8e-14 Score=139.50 Aligned_cols=283 Identities=12% Similarity=0.039 Sum_probs=191.6
Q ss_pred ChhHHHHHHhcCCCCCC-HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 87 DDTQFRCAVSELPPRFN-NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~~-~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
+...+...+...|+... +..+..+....|+++.|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 61 A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 61 GLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred hHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556677777776653 3344444567888888888888886544 45667777777888888888888888888877
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860 166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM 245 (417)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m 245 (417)
..+ .+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|+ +++|...++.+
T Consensus 139 l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~~a~~~~-~~l~~~g~--------~~eA~~~~~~~ 203 (656)
T PRK15174 139 AFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRGDMIATC-LSFLNKSR--------LPEDHDLARAL 203 (656)
T ss_pred hCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCHHHHHHH-HHHHHcCC--------HHHHHHHHHHH
Confidence 643 566777788888888888888888888776541 2233333333 34677777 88888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 014860 246 VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN----ARELCDEMKRKGF 321 (417)
Q Consensus 246 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~ 321 (417)
.+....++...+..+..++.+.|++++|.+.++..... -+.+...+..+...+...|++++ |...|++..+..
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 66543334444455566777778888888877777652 23356666677777777777764 677777776643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 322 VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
+.+...+..+...+...|++++|...+++..+.. +-+...+..+..+|.+.|++++|...|+++...+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2245667777777777777777777777777642 2234455666677777777777777777777654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.69 E-value=5.3e-13 Score=133.62 Aligned_cols=296 Identities=10% Similarity=-0.011 Sum_probs=231.2
Q ss_pred ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
....+.+.+...|+.. .+..+...+...|+++.|++.|+.+.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4556777777777664 56667777899999999999999997643 45788889999999999999999999998877
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860 166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM 245 (417)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m 245 (417)
... .+...+..+ ..+.+.|++++|...++.+.+. .-.++...+..+...+...|+ .++|+..+++.
T Consensus 173 ~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~---~~~~~~~~~~~l~~~l~~~g~--------~~eA~~~~~~a 238 (656)
T PRK15174 173 EVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPF---FALERQESAGLAVDTLCAVGK--------YQEAIQTGESA 238 (656)
T ss_pred hCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc---CCCcchhHHHHHHHHHHHCCC--------HHHHHHHHHHH
Confidence 654 233344333 3478899999999999998775 112334455666788899999 99999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014860 246 VNDGIEPDIFSLNSMIKGYILSNHVND----ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF 321 (417)
Q Consensus 246 ~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 321 (417)
.+.. +.+...+..+-..+...|++++ |...|+...+. -+.+...+..+...+...|++++|...+++..+...
T Consensus 239 l~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 239 LARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9875 4467788889999999999986 78999988762 234677899999999999999999999999988642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-ChhhHHH
Q 014860 322 VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT-YRTVLDEICRRGRAGEAMKLLKELQNKNLI-DGYTYTK 399 (417)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ 399 (417)
-+...+..+..+|.+.|++++|...|+.+.+. .|+... +..+..++...|+.++|...|++..+.... ....|.-
T Consensus 316 -~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~e 392 (656)
T PRK15174 316 -DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEE 392 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHH
Confidence 24667888899999999999999999999876 355433 344567889999999999999999887541 2333443
Q ss_pred HHHHH
Q 014860 400 LLDVL 404 (417)
Q Consensus 400 ll~~~ 404 (417)
.+..+
T Consensus 393 a~~~~ 397 (656)
T PRK15174 393 GLLAL 397 (656)
T ss_pred HHHHH
Confidence 44443
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.7e-12 Score=115.56 Aligned_cols=292 Identities=13% Similarity=0.144 Sum_probs=193.1
Q ss_pred HHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC
Q 014860 94 AVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT 172 (417)
Q Consensus 94 ~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 172 (417)
.+...|.. .++..+|.++|+-...+.|.++++... ....+.+..+||.+|.+-.-.. ..+++.+|...... ||
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~-Pn 272 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT-PN 272 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC-Cc
Confidence 33445544 589999999999999999999999985 4445899999999998755332 27899999998887 99
Q ss_pred HHHHHHHHHHHHHhCCHHH----HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH--
Q 014860 173 EALYNTIIYFFAEARKLSR----AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV-- 246 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~-- 246 (417)
..|||+++.+.++.|+++. |.+++.+|++. |+.|...+|..+|..+++.++. ...+..++.+..
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKei---GVePsLsSyh~iik~f~re~dp-------~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEI---GVEPSLSSYHLIIKNFKRESDP-------QKVASSWINDIQNS 342 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh---CCCcchhhHHHHHHHhcccCCc-------hhhhHHHHHHHHHh
Confidence 9999999999999998776 56788899998 9999999999999999998882 122333333333
Q ss_pred --HCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 247 --NDGIEP----DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN---YLPN---SFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 247 --~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
-..++| |..-|..-|+.|.+..+.+.|.++..-+....+ +.|+ ..-|..+....|.....+.-..+|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333 344556667777777777777777666543111 1122 1223444455555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------------------
Q 014860 315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ--------------------------------------- 355 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------------------------- 355 (417)
.|.-.-.-|+..+...++++..-.|.++-.-+++..+++.|
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 55544444555555555555554444444444443333322
Q ss_pred ---------------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CChhhHHHHH
Q 014860 356 ---------------RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL--IDGYTYTKLL 401 (417)
Q Consensus 356 ---------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll 401 (417)
........+...-.+.+.|+.++|.++|.-+.+.+- |-....+.++
T Consensus 503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 122333455556667899999999999999866543 4334444333
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.58 E-value=2.7e-11 Score=121.39 Aligned_cols=166 Identities=10% Similarity=-0.064 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
..|+.+...+...|+ +++|+..|++..+.. +-+...|..+...+...|++++|...|+...+. -+.+..
T Consensus 332 ~a~~~lg~~~~~~g~--------~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~ 400 (615)
T TIGR00990 332 IALNLRGTFKCLKGK--------HLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPD 400 (615)
T ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 345555556666666 777777777766553 222446666666777777777777777776552 123456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
.|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+. .+-+...|..+...+.
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHH
Confidence 67777777777777777777777776653 224566666777777777788887777777654 2334566777777777
Q ss_pred HcCCHhHHHHHHHHHHHCC
Q 014860 372 RRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (417)
..|++++|.+.|++.....
T Consensus 479 ~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HccCHHHHHHHHHHHHhcC
Confidence 7888888888877766653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.58 E-value=1.3e-11 Score=123.66 Aligned_cols=259 Identities=12% Similarity=0.034 Sum_probs=208.4
Q ss_pred cCChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 114 QEDPLVCLELFNWASKQPRFRH-DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
.+++++|++.|+.+.......| ....|..+...+...|++++|...++...+... .+...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHH
Confidence 4679999999999875443333 456788888888899999999999999988753 4567888999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND 272 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 272 (417)
+..|++..+. -+.+...|..+...+...|+ +++|...|++..+.. +.+...+..+...+.+.|++++
T Consensus 385 ~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 385 EEDFDKALKL----NSEDPDIYYHRAQLHFIKGE--------FAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999875 23457889999999999999 999999999998875 3456778888889999999999
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHHHHHH
Q 014860 273 ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-----SS-KSYNSLVSALALNGEVEETVK 346 (417)
Q Consensus 273 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~-~~~~~li~~~~~~g~~~~A~~ 346 (417)
|...|+...+. .+.+...|+.+...+...|++++|.+.|++..+..... +. ..++..+..+...|++++|.+
T Consensus 452 A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 452 SMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999998762 34457889999999999999999999999987653221 11 122223334445799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 347 NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 347 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
++++..+.. +-+...+..+...+.+.|++++|.+.|++..+..
T Consensus 530 ~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 530 LCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999988753 2344578889999999999999999999987654
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=6e-12 Score=112.14 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=212.5
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--ccCChhHH-HHHHHHHHcCCC-----------
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG--AAKMYQEM-DDVVNQMLATPS----------- 168 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a-~~~~~~m~~~~~----------- 168 (417)
+-|.|+... .++..+.+.-+|+.| +..|+..+...-..+++..+ ...++.-+ ++.|-.|.+.|.
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 444555543 467788899999999 46677777777666655422 22222111 122222222210
Q ss_pred -------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHH
Q 014860 169 -------FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCL 241 (417)
Q Consensus 169 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~ 241 (417)
.+.+..++..||.+.|+--..++|.++|++.... ..+.+..+||.+|.+-.-.. ..++
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~---k~kv~~~aFN~lI~~~S~~~------------~K~L 260 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA---KGKVYREAFNGLIGASSYSV------------GKKL 260 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh---hheeeHHhhhhhhhHHHhhc------------cHHH
Confidence 1146689999999999999999999999999887 56889999999998765433 2568
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 014860 242 FKQMVNDGIEPDIFSLNSMIKGYILSNHVND----ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN-ARELCDEM 316 (417)
Q Consensus 242 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m 316 (417)
..+|....+.||..|+|+++.+..+.|+++. |.+++.+|++ .|+.|...+|..+|..+++.++..+ |.-++.++
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 8999999999999999999999999998764 6778899999 8999999999999999999988754 45555555
Q ss_pred HHC----CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHHcCCHhHHHH
Q 014860 317 KRK----GFV---P-SSKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDF---ITYRTVLDEICRRGRAGEAMK 381 (417)
Q Consensus 317 ~~~----g~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~---~~~~~li~~~~~~g~~~~A~~ 381 (417)
... .++ | |...|...+..|.+..+.+-|.++-.-+... -+.|+. .-|..+..+.|.....+..+.
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 222 2 4556788888899999999888877666543 123332 245677778888889999999
Q ss_pred HHHHHHHCCC-CChhhHHHHHHHHHhhcCc
Q 014860 382 LLKELQNKNL-IDGYTYTKLLDVLEDDFGN 410 (417)
Q Consensus 382 ~~~~m~~~~~-p~~~t~~~ll~~~~~~~~~ 410 (417)
.|+.|.-.-+ |+..+...+++++.-....
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRL 449 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcc
Confidence 9999988876 8888888888887655433
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.56 E-value=2.3e-12 Score=119.63 Aligned_cols=278 Identities=14% Similarity=0.141 Sum_probs=223.4
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 181 (417)
+.|..|...+..+|+...|++-|+++.+.. +.=...|-.|...|...+.+++|...+.......+ .....+..+..
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp--n~A~a~gNla~ 294 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP--NHAVAHGNLAC 294 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC--cchhhccceEE
Confidence 467777778888899999999888886543 23356788888889999999999998888877654 46778888888
Q ss_pred HHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 182 FFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
.|-..|++|-|+..|++..+. .|+ ...|+.|..++-..|+ +.+|++.|.+..... .--....+.|
T Consensus 295 iYyeqG~ldlAI~~Ykral~~-----~P~F~~Ay~NlanALkd~G~--------V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALEL-----QPNFPDAYNNLANALKDKGS--------VTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred EEeccccHHHHHHHHHHHHhc-----CCCchHHHhHHHHHHHhccc--------hHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 899999999999999998875 554 6789999999999999 999999999888764 3345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 014860 261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNG 339 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g 339 (417)
-..|...|.+++|..+|....+. .+--...++.|...|-..|++++|..-+++... +.|+ ...|+.+-..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 99999999999999999887651 223456788999999999999999999998876 6777 478899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHH
Q 014860 340 EVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDV 403 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~ 403 (417)
+++.|...+.+.+.. .|.- ..++.|...|-..|++.+|..-+++..+...--...|-.++.+
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 999999999888864 4443 4778899999999999999999999888765222333444433
No 18
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=4.1e-14 Score=127.61 Aligned_cols=261 Identities=16% Similarity=0.165 Sum_probs=111.8
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA 186 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 186 (417)
+...+.+.|++++|++++........-+.|..-|..+.......+++++|.+.++.+...+. .+...+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc-ccc
Confidence 35556788999999999965422221133455555566667789999999999999998765 456677888887 799
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 014860 187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYI 265 (417)
Q Consensus 187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~ 265 (417)
+++++|.++++..-+. .++...+..++..+...++ ++++.++++.+.... .+.+...|..+...+.
T Consensus 91 ~~~~~A~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-----DGDPRYLLSALQLYYRLGD--------YDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp --------------------------------H-HHHTT---------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccccccccccc-----ccccchhhHHHHHHHHHhH--------HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 9999999999887665 3566778889999999999 999999999987533 3567788888999999
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET 344 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 344 (417)
+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|
T Consensus 158 ~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccc
Confidence 999999999999998763 35 57788899999999999999999998887763 44556788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 345 VKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 345 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
+.+|++..+. .+.|......+..++...|+.++|.++..+...
T Consensus 234 l~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 234 LEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 9999998875 344777888999999999999999999876543
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.54 E-value=7.5e-11 Score=126.12 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=129.9
Q ss_pred ChhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHH------------HHHHHHHccCCh
Q 014860 87 DDTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYH------------IMTRKLGAAKMY 153 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~ 153 (417)
....+.+.+...|+. ..+..+..++.+.|++++|+..|+.+.+...-.+....+. .....+.+.|++
T Consensus 288 A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence 445566777766643 4566677788899999999999998875432122222221 123456788999
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH--------------
Q 014860 154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT-------------- 219 (417)
Q Consensus 154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~-------------- 219 (417)
++|.+.++++.+... .+...+..+...|...|++++|++.|++..+.. +.+...+..+..
T Consensus 368 ~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 368 AQAERLYQQARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999988764 566778888999999999999999999998751 223333333332
Q ss_pred ----------------------------HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 220 ----------------------------AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN 271 (417)
Q Consensus 220 ----------------------------~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 271 (417)
.+...|+ .++|++.|++..+.. +-+...+..+...|.+.|+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~--------~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK--------WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2334566 889999999988764 235667778888899999999
Q ss_pred HHHHHHHHhhh
Q 014860 272 DALRIFHQMGV 282 (417)
Q Consensus 272 ~a~~~~~~m~~ 282 (417)
+|...++++.+
T Consensus 513 ~A~~~l~~al~ 523 (1157)
T PRK11447 513 QADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1.5e-13 Score=123.92 Aligned_cols=254 Identities=15% Similarity=0.108 Sum_probs=115.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860 142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF 221 (417)
Q Consensus 142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~ 221 (417)
.+...+.+.|++++|.+++.........+.+...|..+...+...++++.|.+.++++...+ +-+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccc-
Confidence 45677889999999999996654443111567777788888888999999999999998762 2245567777777
Q ss_pred HhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHH
Q 014860 222 LSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLC 301 (417)
Q Consensus 222 ~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 301 (417)
...++ .++|.+++++..+. .++...+..++..+.+.++++++.++++..........+...|..+...+.
T Consensus 88 ~~~~~--------~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 88 LQDGD--------PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccc--------cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 68888 99999999887655 356777888999999999999999999998764455678889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860 302 AQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM 380 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 380 (417)
+.|+.++|++.+++..+. .| |....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+
T Consensus 158 ~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccc
Confidence 999999999999999986 34 57788999999999999999999998887763 455667888999999999999999
Q ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhcCcccc
Q 014860 381 KLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIR 413 (417)
Q Consensus 381 ~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~ 413 (417)
..|++....+..|......+-+++...+..+..
T Consensus 235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999987666888888888888877554443
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.50 E-value=3.5e-10 Score=121.05 Aligned_cols=263 Identities=13% Similarity=0.035 Sum_probs=189.7
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH----------
Q 014860 109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT---------- 178 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~---------- 178 (417)
..+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|++.+++..+... .+...+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p--~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP--GNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCH
Confidence 34567899999999999987654 45677788888899999999999999999887653 23333322
Q ss_pred --------------------------------HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 179 --------------------------------IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 179 --------------------------------li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+...+...|++++|++.|++..+. -+-+...+..+...|.+.|+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC
Confidence 233455679999999999999875 13356678888999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----------------------
Q 014860 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---------------------- 284 (417)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------------- 284 (417)
.++|...|+++.+.. +-+...+..+...+...|+.++|...++.+....
T Consensus 511 --------~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 511 --------RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred --------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 999999999988653 2233333333333344445555544444331100
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 285 ----------------NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 285 ----------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 348 (417)
..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...|...|+.++|.+.+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 012344566777888889999999999999988763 336788899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 349 WEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 349 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
+...+. -+.+..++..+..++...|++++|.++++++....
T Consensus 661 ~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 987764 12344566677788889999999999999988764
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=1e-10 Score=110.55 Aligned_cols=255 Identities=11% Similarity=0.052 Sum_probs=201.0
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860 109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYH--IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA 186 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 186 (417)
.+..+.|+++.|.+.+..+.+. .|+...+. .....+...|++++|.+.++.+.+..+ .+......+...|.+.
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P--~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP--RHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Confidence 3337889999999999999643 45654443 335678899999999999999988875 6788999999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCCCH-------HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 187 RKLSRAVYVFKYMKNSRNLECRPSI-------RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS 259 (417)
Q Consensus 187 g~~~~a~~~~~~m~~~~~~g~~p~~-------~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 259 (417)
|++++|.+++..+.+.. ..++. .+|..++.......+ .+...++++.+.+. .+.+......
T Consensus 201 gdw~~a~~~l~~l~k~~---~~~~~~~~~l~~~a~~~l~~~~~~~~~--------~~~l~~~w~~lp~~-~~~~~~~~~~ 268 (398)
T PRK10747 201 GAWSSLLDILPSMAKAH---VGDEEHRAMLEQQAWIGLMDQAMADQG--------SEGLKRWWKNQSRK-TRHQVALQVA 268 (398)
T ss_pred HhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHhCCHH-HhCCHHHHHH
Confidence 99999999999999873 22211 233444444444444 67777777776443 2457788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG 339 (417)
Q Consensus 260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 339 (417)
+..++...|+.++|.+++++..+. .++.. -.++.+....++.+++.+..+...+.. +-|...+..+-..|.+.|
T Consensus 269 ~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 269 MAEHLIECDDHDTAQQIILDGLKR---QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 999999999999999999888662 34442 223445556699999999999998763 336677889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 343 ~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 343 EWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999985 79999999999999999999999999987644
No 23
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.1e-10 Score=97.99 Aligned_cols=289 Identities=14% Similarity=0.167 Sum_probs=181.2
Q ss_pred CChhHHHHHHhcCCCCCCHH-HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHH
Q 014860 86 LDDTQFRCAVSELPPRFNNE-ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYH--IMTRKLGAAKMYQEMDDVVNQ 162 (417)
Q Consensus 86 ~~~~~~~~~l~~~p~~~~~~-~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~ 162 (417)
.+.+.|...+..-|..+-.+ +|.+.+.+.|..+.|+++.+.+...++..-+..... .+..-|...|-+|.|+++|..
T Consensus 53 KAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~ 132 (389)
T COG2956 53 KAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ 132 (389)
T ss_pred hHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 35555666666655554333 355556777788888888877766655444433332 244556777888888888887
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHH
Q 014860 163 MLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCL 241 (417)
Q Consensus 163 m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~ 241 (417)
+.+.+. --......|+..|-...+|++|+++-+++.+.++-..... ...|.-+...+....+ .+.|..+
T Consensus 133 L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~--------~d~A~~~ 202 (389)
T COG2956 133 LVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD--------VDRAREL 202 (389)
T ss_pred Hhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh--------HHHHHHH
Confidence 777655 3445666777778888888888887777776521111111 2235555555555666 7777777
Q ss_pred HHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860 242 FKQMVNDGIEPDIFSL-NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG 320 (417)
Q Consensus 242 ~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 320 (417)
+....+.+ |+.+-- -.+-+.....|++..|.+.++...+ .+..--..+...|..+|...|+.++...++.++.+..
T Consensus 203 l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77776653 333222 2344566677888888888887776 4444445566777788888888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCCHhHHHHHHHHHHHCCC
Q 014860 321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC---RRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~ 391 (417)
..++ .-..+-..-....-.+.|..++.+-..+ +|+...+..||..-. ..|..++.+.+++.|....+
T Consensus 280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 3333 3333434334444455666655554443 588888888887653 34557777778888876654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=1.4e-09 Score=109.94 Aligned_cols=143 Identities=9% Similarity=0.104 Sum_probs=80.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHH
Q 014860 261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG-----FVPSSKSYNSLVSAL 335 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~li~~~ 335 (417)
+-++...|++.++.+.|+.+.. .+.+....+-.++.++|...+++++|+.++..+.... ..++......|.-+|
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~-~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEA-EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3445556666666666666665 4444444556666666777777777777777665432 122333345666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-----------CCCH--H-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHH
Q 014860 336 ALNGEVEETVKNLWEMIEKQR-----------PVDF--I-TYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLL 401 (417)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 401 (417)
...+++++|..+++.+.+.-- .||. . .+..++..+.-.|+..+|++.++++.....-|......+-
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 677777777777776665200 1221 1 2233455566667777777777776555433444444443
Q ss_pred HHH
Q 014860 402 DVL 404 (417)
Q Consensus 402 ~~~ 404 (417)
+.+
T Consensus 458 ~v~ 460 (822)
T PRK14574 458 SIY 460 (822)
T ss_pred HHH
Confidence 333
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.45 E-value=1.9e-09 Score=110.43 Aligned_cols=291 Identities=9% Similarity=0.023 Sum_probs=183.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
+..+...+...+++++|+++|+...+.. +.+...+..+...+...|++++|...++++.+..+ .+.. +..+..++
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~la~~l 126 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHHHHHH
Confidence 5667777788889999999998876543 45677777788888889999999999998887754 4555 88888888
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchh--------------------------------
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYIN-------------------------------- 231 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~-------------------------------- 231 (417)
...|+.++|+..++++.+. .+.+...+..+...+...+....+.
T Consensus 127 ~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 8889999999999888875 1334455555555555544421000
Q ss_pred ------hhhHHHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHhhhhCCC-CCCHHHHHHHHH
Q 014860 232 ------HVYMETIRCLFKQMVND-GIEPDIF-SL----NSMIKGYILSNHVNDALRIFHQMGVVYNY-LPNSFSYDYLIH 298 (417)
Q Consensus 232 ------~~~~~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~ 298 (417)
....++|++.++.+.+. ...|+.. .+ ...+.++...|++++|...|+.+.+ .+- .|+. .-..+..
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPW-AQRWVAS 280 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHH-HHHHHHH
Confidence 00014566666666643 1122221 11 1113344566788888888888776 231 1322 1122456
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HH
Q 014860 299 GLCAQGRTKNARELCDEMKRKGFVP---SSKSYNSLVSALALNGEVEETVKNLWEMIEKQ-----------RPVD---FI 361 (417)
Q Consensus 299 ~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~---~~ 361 (417)
+|...|++++|+..|+++.+..... .......+..++.+.|++++|..+++.+.+.. -.|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 7778888888888888876542111 12345556667778888888888888777641 1122 12
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 362 TYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
.+..+...+...|+.++|+++++++.....-+...+..+...+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34456667777788888888888777664335555555555443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.45 E-value=1.1e-09 Score=112.13 Aligned_cols=299 Identities=11% Similarity=0.019 Sum_probs=209.0
Q ss_pred ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
....+.+.+...|... .+..+...+...|++++|+..++.+.+.. +.+.. +..+..++...|+.++|...++++.+
T Consensus 68 A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 68 SLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455666776666654 34556667788999999999999987654 45666 88888889999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH----------------------------------------------Hh
Q 014860 166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFK----------------------------------------------YM 199 (417)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----------------------------------------------~m 199 (417)
..+ .+...+..+..++...|..+.|++.++ .+
T Consensus 145 ~~P--~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 145 RAP--QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred hCC--CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 765 456666667777777777666655554 33
Q ss_pred HhCCCCCCCCCHH-H----HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 014860 200 KNSRNLECRPSIR-S----YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PDIFSLNSMIKGYILSNHVNDA 273 (417)
Q Consensus 200 ~~~~~~g~~p~~~-~----~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a 273 (417)
.+.- .-.|+.. . ....+..+...|+ .++|+..|+.+.+.+.+ |+. .-..+...|...|++++|
T Consensus 223 l~~~--~~~p~~~~~~~~a~~d~l~~Ll~~g~--------~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 223 EALW--HDNPDATADYQRARIDRLGALLARDR--------YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred Hhhc--ccCCccchHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 2210 0011111 1 1111334456677 99999999999987632 332 222356789999999999
Q ss_pred HHHHHHhhhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHh
Q 014860 274 LRIFHQMGVVYNYL--PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-----------VPS---SKSYNSLVSALAL 337 (417)
Q Consensus 274 ~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~---~~~~~~li~~~~~ 337 (417)
+..|+.+.+..... ........+..++...|++++|..+++.+.+... .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999986522111 1134566777788999999999999999987521 133 2345667788889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHH
Q 014860 338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLD 402 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 402 (417)
.|+.++|+++++++... .+-+...+..+...+...|+.++|++.+++......-+...+.....
T Consensus 372 ~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 372 SNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 99999999999999876 34466788888889999999999999999988876324443333333
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=5.6e-11 Score=110.68 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=189.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHH
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNIL 217 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~l 217 (417)
.|..|...+-..|+..+|.+-|++..+.++ .-...|-.|...|...+.+++|+..|.+.... .| ..+.+..|
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP--~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-----rpn~A~a~gNl 292 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDP--NFLDAYINLGNVYKEARIFDRAVSCYLRALNL-----RPNHAVAHGNL 292 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCC--cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----CCcchhhccce
Confidence 344444455567777777777777766653 22456777788888888888888888777754 34 45667777
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI 297 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 297 (417)
...|-..|. +|.|+..|++..+.. +--...|+.|-.++-..|++.+|++.+...... ...-....+.|-
T Consensus 293 a~iYyeqG~--------ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLg 361 (966)
T KOG4626|consen 293 ACIYYEQGL--------LDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLG 361 (966)
T ss_pred EEEEecccc--------HHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 777888888 999999999988763 223678999999999999999999999988652 223456788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCC
Q 014860 298 HGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI-TYRTVLDEICRRGR 375 (417)
Q Consensus 298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~ 375 (417)
..|...|++++|..+|....+- .|. ...+|.|...|-++|++++|+..+++.+. ++|+.. .|+.+-..|-..|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 9999999999999999988764 444 46789999999999999999999999886 577764 88999999999999
Q ss_pred HhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 376 AGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 376 ~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
++.|.+.+.+.+..+..=....+.|-..+.+.
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 99999999998887643344455555555443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=7.8e-10 Score=105.09 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=193.5
Q ss_pred hhHHHHHHhcCCCCCCH-HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHH
Q 014860 88 DTQFRCAVSELPPRFNN-EELCNVMTLQEDPLVCLELFNWASKQPRFRHDAS--TYHIMTRKLGAAKMYQEMDDVVNQML 164 (417)
Q Consensus 88 ~~~~~~~l~~~p~~~~~-~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (417)
...+.+..+..|++..+ -...++....|+++.|.+.+..+.+.. |+.. ..-.....+...|++++|.+.++.+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 104 EKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555555544333 233455678899999999999885433 4433 33334777888999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH-HHHHHH---HhcCCccchhhhhHHHHHH
Q 014860 165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN-ILFTAF---LSRGKNTYINHVYMETIRC 240 (417)
Q Consensus 165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~-~li~~~---~~~g~~~~~~~~~~~~a~~ 240 (417)
+..+ .+..+...+...|.+.|++++|.+.+..+.+. +.. +...+. .-..++ ...+. .++..+
T Consensus 181 ~~~P--~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~---~~~-~~~~~~~l~~~a~~~~l~~~~--------~~~~~~ 246 (409)
T TIGR00540 181 EMAP--RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA---GLF-DDEEFADLEQKAEIGLLDEAM--------ADEGID 246 (409)
T ss_pred HhCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc---CCC-CHHHHHHHHHHHHHHHHHHHH--------HhcCHH
Confidence 8874 56778889999999999999999999999986 333 333231 111222 22222 233333
Q ss_pred HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 014860 241 LFKQMVNDGI---EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS---YDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 241 ~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.+..+.+... +.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 4444443321 137788888999999999999999999998763 244432 1222223344577888888888
Q ss_pred HHHHCCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 315 EMKRKGFVPS-S--KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 315 ~m~~~g~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
...+. .|+ . ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87765 333 3 556688899999999999999999644444578999899999999999999999999997543
No 29
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=3.2e-13 Score=86.82 Aligned_cols=49 Identities=39% Similarity=0.769 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860 288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA 336 (417)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 336 (417)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1e-09 Score=94.78 Aligned_cols=275 Identities=13% Similarity=0.062 Sum_probs=204.4
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHhCCHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT--EALYNTIIYFFAEARKLS 190 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~ 190 (417)
-++++++|+++|-.|.+.. +-+.++.-.+.+.|-+.|.+|.|+.+++.+.+.+...-+ ....-.|.+-|..+|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4578999999999997644 456666677888999999999999999999998654111 234456778899999999
Q ss_pred HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 014860 191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI----FSLNSMIKGYIL 266 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~ 266 (417)
+|..+|..+.+.+ ..-......|+..|-...+ |++|+++-+++.+.+-.+.. .-|--+-..+..
T Consensus 125 RAE~~f~~L~de~----efa~~AlqqLl~IYQ~tre--------W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 125 RAEDIFNQLVDEG----EFAEGALQQLLNIYQATRE--------WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 9999999999852 2335667889999999999 99999999999987644332 223344455556
Q ss_pred cCCHHHHHHHHHHhhhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 267 SNHVNDALRIFHQMGVVYNYLPNSFSY-DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 345 (417)
..+++.|..++.+..+. .|+.+-- -.+-......|+++.|.+.++...+.+..--..+...|..+|.+.|+.++..
T Consensus 193 ~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 78899999999887652 2333322 3344567889999999999999999865555677889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
..+.++.+.. +....-..|-..-....-.+.|...+.+-..+. |+...+..++..=..+
T Consensus 270 ~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~-Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 270 NFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRK-PTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC-CcHHHHHHHHHhhhcc
Confidence 9999998873 333333444444445556677777777666653 6777777777654433
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=3.8e-13 Score=86.45 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860 323 PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR 372 (417)
Q Consensus 323 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 372 (417)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.43 E-value=2.9e-09 Score=109.92 Aligned_cols=233 Identities=11% Similarity=-0.046 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...|..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|+++... +|+...+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~ 546 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLL 546 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHH
Confidence 67777877777776 78888988777776654 44444444455556899999999999988654 45556677
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY 295 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 295 (417)
.+...+.+.|+ .++|.+.+++..+.. +.+...+..+.....+.|++++|...+++..+. .|+...|..
T Consensus 547 ~la~all~~Gd--------~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~ 614 (987)
T PRK09782 547 AAANTAQAAGN--------GAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVA 614 (987)
T ss_pred HHHHHHHHCCC--------HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHH
Confidence 77788888999 999999999988764 223333333344445569999999999888752 467888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
+...+.+.|++++|+..+++..+... -+...++.+-.++...|+.++|...+++..+. .+-+...+..+..++...|+
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCC
Confidence 89999999999999999999887642 25677788888899999999999999988875 23356678888889999999
Q ss_pred HhHHHHHHHHHHHCCC
Q 014860 376 AGEAMKLLKELQNKNL 391 (417)
Q Consensus 376 ~~~A~~~~~~m~~~~~ 391 (417)
+++|+..|++..+...
T Consensus 693 ~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 693 MAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999887653
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1.5e-09 Score=102.70 Aligned_cols=271 Identities=10% Similarity=0.049 Sum_probs=205.4
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHH-HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHH--HHHHHHHHhCCH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIM-TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYN--TIIYFFAEARKL 189 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~ 189 (417)
..|+++.|.+......+. .+++..+..+ ..+..+.|+++.+.+.+.++.+.. |+..... .....+...|++
T Consensus 96 ~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred hCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCH
Confidence 469999999888776432 2233444333 445589999999999999998765 4433322 446788999999
Q ss_pred HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH
Q 014860 190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-------FSLNSMIK 262 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~ 262 (417)
+.|.+.++++.+. -+-+......+...|.+.|+ +++|.+++..+.+.+..++. .+|..++.
T Consensus 170 ~~Al~~l~~~~~~----~P~~~~al~ll~~~~~~~gd--------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 170 HAARHGVDKLLEV----APRHPEVLRLAEQAYIRTGA--------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999986 24467889999999999999 99999999999988755332 13334444
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
......+.+...++++...+. .+.+......+..++...|+.++|.+++++..+. .||.... ++.+....++.+
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~ 311 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPE 311 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChH
Confidence 444555667777777777552 3467888899999999999999999999999874 4555322 344445669999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFG 409 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~ 409 (417)
++.+..+...+. .+-|...+.++-..|.+.|++++|.+.|+...+.. |+..+|..+-..+.+.+.
T Consensus 312 ~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 312 QLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCC
Confidence 999999998876 33455667888899999999999999999999864 777777777777776633
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=6.3e-10 Score=96.96 Aligned_cols=201 Identities=13% Similarity=0.013 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP 252 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p 252 (417)
...+..+...|...|++++|...+++..+. .+.+...+..+...+...|+ +++|.+.+++..+.. +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-~~ 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGE--------LEKAEDSFRRALTLN-PN 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CC
Confidence 455666666777777777777777776653 12345566666677777777 777777777666554 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLV 332 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 332 (417)
+...+..+...+...|++++|.+.++..............+..+...+...|++++|...+.+..+.. +.+...+..+.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 176 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA 176 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence 44556666666777777777777777765522222234456666667777777777777777776653 22455677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
..+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777788888888888777765 334556666667777777888888777776654
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=3.2e-09 Score=100.92 Aligned_cols=284 Identities=10% Similarity=-0.009 Sum_probs=199.9
Q ss_pred HHHHHHH--hccCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860 105 EELCNVM--TLQEDPLVCLELFNWASKQPRFRHDA-STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 105 ~~ll~~l--~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 181 (417)
..+.+++ ...|+++.|.+.+....+. .|+. ..+-....+..+.|+.+.+.+.+....+.... +.....-....
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~ 161 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHH
Confidence 3344444 4789999999999887543 3543 34445567788899999999999998765432 33344455688
Q ss_pred HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 014860 182 FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL-NSM 260 (417)
Q Consensus 182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l 260 (417)
.+...|+++.|...++.+.+. .+-+...+..+...+...|+ +++|.+++..+.+.++. +...+ ..-
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~~~~~~d--------~~~a~~~l~~l~k~~~~-~~~~~~~l~ 228 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEAYIRSGA--------WQALDDIIDNMAKAGLF-DDEEFADLE 228 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 899999999999999999986 24467789999999999999 99999999999998754 33333 222
Q ss_pred HHHH---HhcCCHHHHHHHHHHhhhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHH
Q 014860 261 IKGY---ILSNHVNDALRIFHQMGVVY--NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS---YNSLV 332 (417)
Q Consensus 261 i~~~---~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li 332 (417)
..++ ...+..+.+.+.+..+-... ....+...+..+...+...|+.++|.+++++..+.. ||... .....
T Consensus 229 ~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~ 306 (409)
T TIGR00540 229 QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLP 306 (409)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHH
Confidence 2222 22233333333444443311 112478889999999999999999999999999863 33321 12222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhhc
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDDF 408 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~~ 408 (417)
......++.+.+.+.++...+. .|+. ....++-..+.+.|++++|.+.|+....... |+...+..+-..+.+.+
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 2334467888999999887765 3333 4556788899999999999999996444333 77778888877777664
Q ss_pred C
Q 014860 409 G 409 (417)
Q Consensus 409 ~ 409 (417)
.
T Consensus 385 ~ 385 (409)
T TIGR00540 385 D 385 (409)
T ss_pred C
Confidence 3
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.38 E-value=3.3e-09 Score=109.57 Aligned_cols=276 Identities=11% Similarity=-0.038 Sum_probs=206.0
Q ss_pred hHHHHHHhcCCC--C-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 89 TQFRCAVSELPP--R-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 89 ~~~~~~l~~~p~--~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
..+...+...|+ . ..|..+..++.. +++.+|+..|....... |+......+...+...|++++|...++.+..
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 334445554444 2 234444455544 78999999887775443 5655544455666799999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860 166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM 245 (417)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m 245 (417)
.+ |+...+..+...+.+.|++++|...|+...+. . +.+...+..+.......|+ +++|...+++.
T Consensus 538 ~~---p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~-P~~~~l~~~La~~l~~~Gr--------~~eAl~~~~~A 602 (987)
T PRK09782 538 HD---MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---G-LGDNALYWWLHAQRYIPGQ--------PELALNDLTRS 602 (987)
T ss_pred cC---CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C-CccHHHHHHHHHHHHhCCC--------HHHHHHHHHHH
Confidence 64 44455667788899999999999999999875 1 2333334444445556699 99999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860 246 VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325 (417)
Q Consensus 246 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 325 (417)
.+.. |+...+..+...+.+.|++++|.+.+++.... -+.+...++.+...+...|+.++|+..+++..+... -+.
T Consensus 603 L~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~ 677 (987)
T PRK09782 603 LNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDP 677 (987)
T ss_pred HHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 8764 67889999999999999999999999998762 234567788888899999999999999999988632 367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
..+..+..++...|++++|+..+++..+. .|+. .+.-.......+..+++.|.+-+++-...+
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88999999999999999999999999875 4544 344445555666777777777766655443
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.37 E-value=1.1e-08 Score=103.69 Aligned_cols=300 Identities=11% Similarity=-0.007 Sum_probs=208.4
Q ss_pred CCCCCCHHHHH---HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHH
Q 014860 98 LPPRFNNEELC---NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEA 174 (417)
Q Consensus 98 ~p~~~~~~~ll---~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 174 (417)
.|.+..+..+. ..+...|+++.|+++|+.+.+.. +-+...+..++..+...++.++|.+.++.+.... |+..
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~ 170 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQ 170 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchH
Confidence 34444444333 35567789999999999887655 4556777777788888899999998888887765 4555
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC----------------------------
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK---------------------------- 226 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~---------------------------- 226 (417)
.+-.++..+...++..+|++.++++.+.. +-+...+..++.++.+.|-
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~ 246 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA 246 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence 55555555555666666888888887751 1123333333333332222
Q ss_pred -------------------------------------cc-c---------------hhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 227 -------------------------------------NT-Y---------------INHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 227 -------------------------------------~~-~---------------~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
.+ . ..+..+.++++.|+.|...|.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 00 0 000116677777777777776666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYN----YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG--------- 320 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------- 320 (417)
..+-.++.++|...++.++|+.+++.+....+ ..++......|..+|...+++++|..+++.+.+.-
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 77888999999999999999999999865322 23345556789999999999999999999999731
Q ss_pred ----CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChh
Q 014860 321 ----FVPSSK-SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGY 395 (417)
Q Consensus 321 ----~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~ 395 (417)
..||-. .+..++..+.-.|+..+|++.++++... -+-|......+...+...|.+.+|++.++.......-+..
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 123333 3445677788999999999999999876 4558888899999999999999999999777766433555
Q ss_pred hHHHHHHHHHhh
Q 014860 396 TYTKLLDVLEDD 407 (417)
Q Consensus 396 t~~~ll~~~~~~ 407 (417)
+......+..+.
T Consensus 486 ~~~~~~~~al~l 497 (822)
T PRK14574 486 LERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHhh
Confidence 555555444433
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=3.6e-10 Score=106.46 Aligned_cols=268 Identities=13% Similarity=0.077 Sum_probs=154.3
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHhCCHHH-
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF-CGTEALYNTIIYFFAEARKLSR- 191 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~- 191 (417)
.-+.++|+..|....... .-+......+.++|-..+++++|+++|+.+.+.... ..+..+|.+.+-.+-+.=.+.-
T Consensus 332 ~y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 345788999998854322 345566777888999999999999999999886532 2456666666654433221111
Q ss_pred HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 192 AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN 271 (417)
Q Consensus 192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 271 (417)
|..+.+.++ -...+|.++-.+|.-.++ .+.|++.|++..+.. +-..++|+.+-.-+.....+|
T Consensus 410 aq~Li~~~~--------~sPesWca~GNcfSLQkd--------h~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 410 AQDLIDTDP--------NSPESWCALGNCFSLQKD--------HDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred HHHHHhhCC--------CCcHHHHHhcchhhhhhH--------HHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHH
Confidence 222222222 235666677666666666 666776666666543 225566666655566666666
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 272 DALRIFHQMGVVYNYLPNSFSYDY---LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 348 (417)
.|...|+.... .|...||+ +-..|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.|+|++++
T Consensus 473 ~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 473 KAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred hHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHH
Confidence 66666665543 44444443 344466666666666666666553322 3444455555566666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 349 WEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 349 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
++..... +-|+..--..+..+...++.++|++.++++++.-.-+...|..+-+.|.+-
T Consensus 547 ~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 547 EKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 6665542 123333233344555566666666666666664222444444444554443
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=3e-09 Score=92.64 Aligned_cols=202 Identities=13% Similarity=0.070 Sum_probs=157.3
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY 214 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~ 214 (417)
.....+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.|++..+. .+.+...+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~ 102 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNNGDVL 102 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHH
Confidence 3466777778888889999999999988877653 45677888888888999999999999888875 23456677
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (417)
..+...+...|+ +++|.+.+++..+.... .....+..+...+...|++++|.+.+++.... .+.+...+
T Consensus 103 ~~~~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 172 (234)
T TIGR02521 103 NNYGTFLCQQGK--------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESL 172 (234)
T ss_pred HHHHHHHHHccc--------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHH
Confidence 888888888888 89999999888764322 23456666777888899999999999888762 22346677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
..+...+...|++++|...+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888999999999999988776 344667777788888888999999888877765
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=6.9e-11 Score=114.13 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHH
Q 014860 322 VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKL 400 (417)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~l 400 (417)
.|+..+|.+++.+-..+|+++.|..++.+|+++|++.+.+-|..|+-+ .|+...+..++.-|...|+ |+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 356666666666666666666666666666666666666555555544 5555566666666666666 566666555
Q ss_pred HHHHHh
Q 014860 401 LDVLED 406 (417)
Q Consensus 401 l~~~~~ 406 (417)
+..+.+
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 554444
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=2.4e-09 Score=105.67 Aligned_cols=248 Identities=12% Similarity=0.069 Sum_probs=128.4
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---------ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLG---------AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
.++|+++|+...+.. +-+...|..+..++. ..+++++|...+++..+..+ .+...+..+...+...|
T Consensus 277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP--~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH--NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcc
Confidence 456666666665433 223444444433322 22335666666666666553 45566666666666666
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS 267 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 267 (417)
++++|...|++..+. -+.+...|..+...+...|+ +++|...+++..+.... +...+..+...+...
T Consensus 353 ~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~--------~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 353 EYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQ--------LEEALQTINECLKLDPT-RAAAGITKLWITYYH 419 (553)
T ss_pred CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhc
Confidence 777777777666654 12234556666666666666 66677776666655311 122222333344556
Q ss_pred CCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 014860 268 NHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 345 (417)
|++++|.+.+++.... . .| +...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|.
T Consensus 420 g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~ 493 (553)
T PRK12370 420 TGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERAL 493 (553)
T ss_pred cCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHH
Confidence 6666666666665431 1 12 2334555555666667777776666665443 222 233344444555555 3555
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 346 KNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 346 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
..++.+.+. ...+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 494 ~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 494 PTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 555555543 112222222 22233444554444444 6665554
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=1.7e-08 Score=89.86 Aligned_cols=256 Identities=11% Similarity=0.072 Sum_probs=157.2
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
..|++.+|.++..... +.+ .-..-.|..-..+..+.|+.+.+-..+.+.-+.... ++....-+..+.....|+++.|
T Consensus 96 ~eG~~~qAEkl~~rna-e~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNA-EHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhh-hcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhH
Confidence 4677888888777763 332 223444555556667778888888888877776444 6666777777777788888888
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-------FSLNSMIKGYI 265 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~ 265 (417)
..-.+++.+.. +...........+|.+.|+ +..+..+...|.+.|+--|. .+|+.++.-..
T Consensus 173 ~~~v~~ll~~~----pr~~~vlrLa~r~y~~~g~--------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 173 RENVDQLLEMT----PRHPEVLRLALRAYIRLGA--------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHHHHHHhC----cCChHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 77777777652 4456777778888888888 78888888888777754433 24555555554
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------------
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--------------------- 324 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------------- 324 (417)
..+..+.-...+++...+ ...+...-.+++.-+.++|+.++|.++.++..+++..|+
T Consensus 241 ~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred ccccchHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHH
Confidence 444444444455554432 223344444555566666666666666666555544433
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 325 ---------SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 325 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
...+.+|-..|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++-.
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 233455555566666666666666644443 4566666666666666666666666655543
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=4e-10 Score=109.01 Aligned_cols=257 Identities=13% Similarity=0.096 Sum_probs=176.1
Q ss_pred ChhHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860 87 DDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT 166 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 166 (417)
+.-...+.....|++.+|..++.-||..|+.+.|- +|..| +....+.+...|+.++....++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC---------
Confidence 44445677788899999999999999999999998 99999 45567888999999999999999887665
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHhHhC-CCCCCCCCHHHHH--------------HHHHHHHhcCCcc
Q 014860 167 PSFCGTEALYNTIIYFFAEARKLSR---AVYVFKYMKNS-RNLECRPSIRSYN--------------ILFTAFLSRGKNT 228 (417)
Q Consensus 167 ~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~-~~~g~~p~~~~~~--------------~li~~~~~~g~~~ 228 (417)
. |...+|..|..+|.+.||+.. +.+.++.+... ...|+---..-+- ..+......|.
T Consensus 80 --e-p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl-- 154 (1088)
T KOG4318|consen 80 --E-PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL-- 154 (1088)
T ss_pred --C-CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH--
Confidence 2 888999999999999999654 33322222221 0011111111111 12222222222
Q ss_pred chhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 229 YINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTK 307 (417)
Q Consensus 229 ~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (417)
++.+++++..+.... ..|-.+ ++.-+.. ++...+++....+.-.+ .|+..+|.+++.+-..+|+.+
T Consensus 155 ------waqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 155 ------WAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred ------HHHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchh
Confidence 444444444332111 011111 2332222 23445555555554223 699999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 308 NARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 308 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
.|..++.+|++.|+..+..-|-.|+.+ .++...+..++..|.+.|+.|+..|+...+..+...|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999888888888776 78888888999999999999999999877777766444
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=3.5e-08 Score=97.50 Aligned_cols=248 Identities=13% Similarity=0.048 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHH-----ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------hCCHHHHHHHHHHhH
Q 014860 135 HDASTYHIMTRKLG-----AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE---------ARKLSRAVYVFKYMK 200 (417)
Q Consensus 135 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 200 (417)
.+...|...+++.. ..+.+++|.+.+++..+..+ .+...|..+..+|.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 45666667666642 23456899999999998764 455666666655542 244899999999998
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860 201 NSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQM 280 (417)
Q Consensus 201 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (417)
+.. +-+...|..+-..+...|+ +++|...|++..+.+ +.+...+..+-..+...|++++|...+++.
T Consensus 332 ~ld----P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 332 ELD----HNNPQALGLLGLINTIHSE--------YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred hcC----CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 852 3467788888888999999 999999999999875 445677888889999999999999999998
Q ss_pred hhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 014860 281 GVVYNYLPNS-FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD 359 (417)
Q Consensus 281 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 359 (417)
.+. .|+. ..+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...+.++... .|+
T Consensus 399 l~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~ 473 (553)
T PRK12370 399 LKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT 473 (553)
T ss_pred Hhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence 763 2432 2333445557778999999999999876532224555777888889999999999999987664 444
Q ss_pred HH-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CChhhHHHHHHHH
Q 014860 360 FI-TYRTVLDEICRRGRAGEAMKLLKELQNKNL--IDGYTYTKLLDVL 404 (417)
Q Consensus 360 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~~~ 404 (417)
.. ..+.+...|+..| ++|...++.+.+..- +....+..++.++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 43 3445555667777 488888888766432 3333334444444
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=3.6e-09 Score=99.79 Aligned_cols=259 Identities=13% Similarity=0.067 Sum_probs=201.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRF-RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
..+..+|-..+++++|.++|+.+++.... -.+.+.|..++-.+-+.- +--.+-+.+.+... -.+.+|.++..+|
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~Laq~Li~~~~--~sPesWca~GNcf 431 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYLAQDLIDTDP--NSPESWCALGNCF 431 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHHHHHHHhhCC--CCcHHHHHhcchh
Confidence 34667777889999999999999765443 457888888876653211 11122333333332 4578999999999
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH---
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS--- 259 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--- 259 (417)
.-.++.+.|++.|++.... .| ...+|+.+-.-+....+ +|.|...|+... ..|...||+
T Consensus 432 SLQkdh~~Aik~f~RAiQl-----dp~faYayTLlGhE~~~~ee--------~d~a~~~fr~Al----~~~~rhYnAwYG 494 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQL-----DPRFAYAYTLLGHESIATEE--------FDKAMKSFRKAL----GVDPRHYNAWYG 494 (638)
T ss_pred hhhhHHHHHHHHHHHhhcc-----CCccchhhhhcCChhhhhHH--------HHhHHHHHHhhh----cCCchhhHHHHh
Confidence 9999999999999999875 45 67888888888888888 999999998877 567777776
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 260 MIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN 338 (417)
Q Consensus 260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 338 (417)
+-..|.+.++++.|+-.|+...+ +.| +.+....+...+-+.|+.++|++++++......+ |...--.-...+...
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSL 570 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhh
Confidence 45678899999999999998865 334 5666677777888999999999999999876544 444444456677788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 339 GEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 339 g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
++.++|+..++++++- .|+. ..|..+...|-+.|+.+.|+.-|.-+.+.+.
T Consensus 571 ~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred cchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 9999999999999985 4554 5677788899999999999999988887765
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.20 E-value=2.6e-07 Score=90.30 Aligned_cols=261 Identities=11% Similarity=0.052 Sum_probs=157.3
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 014860 115 EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY 194 (417)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 194 (417)
|+.++|.+++..+.++. +.....|-.|...|-..|+.+++...+-..-...+ .|...|-.+.....+.|++++|.-
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p--~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP--KDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHhcccHHHHHH
Confidence 66777777777666554 45666677777777777776666655544433322 455666666666666677777777
Q ss_pred HHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCH
Q 014860 195 VFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN----SMIKGYILSNHV 270 (417)
Q Consensus 195 ~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~ 270 (417)
.|.+..+.. +++...+---...|-+.|+ ...|...|.++.+...+.|..-+. .++..+...++.
T Consensus 229 cy~rAI~~~----p~n~~~~~ers~L~~~~G~--------~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 229 CYSRAIQAN----PSNWELIYERSSLYQKTGD--------LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHHHhcC----CcchHHHHHHHHHHHHhCh--------HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 776666641 3344444444555666666 666666666666543222222222 223334445555
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------------
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR-------------------------------- 318 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------------------------------- 318 (417)
+.|.+.++....+.+-..+...++.++..+.+...++.|......+..
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 555555555443333334444555555555555555555555544443
Q ss_pred -----------------------------CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014860 319 -----------------------------KGF--VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVL 367 (417)
Q Consensus 319 -----------------------------~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 367 (417)
..+ .-+...|.-+..+|...|++++|+++|..+...-..-+...|..+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 221 1123345667778888888888888888888774445567888888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 368 DEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
.+|-..|..++|.+.|+.......
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC
Confidence 888888888888888888877653
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-07 Score=86.54 Aligned_cols=216 Identities=12% Similarity=0.022 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP 252 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p 252 (417)
.|...+.+-|+-.++.++|+..|++..+- .| ....|+.|-.-|....+ ...|.+-++...+-. +.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL-----Np~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL-----NPKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDIN-PR 396 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc-----CcchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcC-ch
Confidence 45555666677778889999999998874 34 46678889899999988 889999999888765 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLV 332 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 332 (417)
|-..|--|-.+|.-.+.+.-|+-.|++..+ --+-|...|.+|-++|.+.++.++|++-|.+....|-. +...+..|.
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La 473 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA 473 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 778888899999999999999999988865 22358889999999999999999999999998877633 567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860 333 SALALNGEVEETVKNLWEMIEK----QRPVDF--ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
..|-+.++..+|...|.+-.+. |..-+. ..-.-|..-+.+.+++++|.......... -+...-=+.|++.+.+
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-ETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 9999999999998888876653 333222 22233555677888998888776666555 2334445566666654
Q ss_pred h
Q 014860 407 D 407 (417)
Q Consensus 407 ~ 407 (417)
.
T Consensus 553 ~ 553 (559)
T KOG1155|consen 553 I 553 (559)
T ss_pred h
Confidence 4
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.1e-07 Score=86.27 Aligned_cols=248 Identities=13% Similarity=0.075 Sum_probs=175.3
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHhCCHHH-HHHHHHHhHhCCCCCCC
Q 014860 131 PRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GTEALYNTIIYFFAEARKLSR-AVYVFKYMKNSRNLECR 208 (417)
Q Consensus 131 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~g~~ 208 (417)
.|++-+...-+....+.-...++++|+.+|+++.+.++.. .|..+|+.++-.--.+..+.- |..++. +.+ .+
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idK-----yR 329 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDK-----YR 329 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hcc-----CC
Confidence 3444444444444444445666666666666666654321 345555555543332222221 222211 111 12
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860 209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP 288 (417)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 288 (417)
..|...+.+-|.-.++ .++|...|++..+.+ +-....|+.+-.-|....+...|.+-++...+ -.+.
T Consensus 330 --~ETCCiIaNYYSlr~e--------HEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~ 396 (559)
T KOG1155|consen 330 --PETCCIIANYYSLRSE--------HEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPR 396 (559)
T ss_pred --ccceeeehhHHHHHHh--------HHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCch
Confidence 2445556666666666 999999999999876 44577888898999999999999999998876 3356
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD 368 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 368 (417)
|-..|-.|-++|.-.+...=|+-.|++...-. +-|...|.+|-.+|.+.++.++|.+.|......|- .+...+..|.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHH
Confidence 88899999999999999999999999988753 33789999999999999999999999999998763 36678999999
Q ss_pred HHHHcCCHhHHHHHHHHHHH----CCCCChhhHHH
Q 014860 369 EICRRGRAGEAMKLLKELQN----KNLIDGYTYTK 399 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~----~~~p~~~t~~~ 399 (417)
.|-+.++.++|.+.|+.-++ .|..+..|..+
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 99999999999999887665 34444444333
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=2.5e-08 Score=94.74 Aligned_cols=246 Identities=16% Similarity=0.116 Sum_probs=177.6
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC-----CCCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHhHhCCC--C
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT-----PSFCGTEAL-YNTIIYFFAEARKLSRAVYVFKYMKNSRN--L 205 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~ 205 (417)
+.-..+...+..+|...|+++.|..++....+. |...+...+ .+.+...|...+++++|..+|+++..... .
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334566777889999999999999999988775 222234333 33477789999999999999999876521 1
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 014860 206 --ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGI-EPDIF-SLNSMIKGYILSNHVNDALRI 276 (417)
Q Consensus 206 --g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~~-~~~~li~~~~~~g~~~~a~~~ 276 (417)
..+--..+++.|-.+|.+.|+ +++|...+++..+ .|. .|.+. .++.+...|+..+++++|..+
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GK--------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGK--------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCC--------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 112224568888889999999 5555555544332 222 23332 456677888899999999999
Q ss_pred HHHhhhhCC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHHH
Q 014860 277 FHQMGVVYN--YLP----NSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GF--VPS-SKSYNSLVSALALNGEVEE 343 (417)
Q Consensus 277 ~~~m~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p~-~~~~~~li~~~~~~g~~~~ 343 (417)
+....+... ..+ -..+++.|-..|-..|++++|++++++.... +. .+. ...++.|-..|.+.+..++
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 887644221 112 2467899999999999999999999987743 11 222 4567889999999999999
Q ss_pred HHHHHHHHHH----cCC-CCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 344 TVKNLWEMIE----KQR-PVDF-ITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 344 A~~~~~~m~~----~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
|.++|.+... .|. .|++ .+|..|...|.+.|++++|.++.+...
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999887443 232 2343 589999999999999999999988776
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.2e-07 Score=85.73 Aligned_cols=273 Identities=14% Similarity=0.076 Sum_probs=194.9
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHI-MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL 189 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 189 (417)
|.++|+++.|++++.-..++.+-..+...-+. +++.+--.+++..|.+.-+.....+. -+......-.......|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcH
Confidence 46889999999999887554432222222222 22333334577788887777766543 2222222222333457899
Q ss_pred HHHHHHHHHhHhCCCCCCCCCHHHHHHHH---HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 190 SRAVYVFKYMKNSRNLECRPSIRSYNILF---TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL 266 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li---~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 266 (417)
++|.+.|++.... |..+-.+|. -.+-..|+ +++|++.|-.+...- ..+..+.-.+...|-.
T Consensus 507 dka~~~ykeal~n-------dasc~ealfniglt~e~~~~--------ldeald~f~klh~il-~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 507 DKAAEFYKEALNN-------DASCTEALFNIGLTAEALGN--------LDEALDCFLKLHAIL-LNNAEVLVQIANIYEL 570 (840)
T ss_pred HHHHHHHHHHHcC-------chHHHHHHHHhcccHHHhcC--------HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 9999999999875 333322222 23556677 999999998765421 3466677778888888
Q ss_pred cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860 267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK 346 (417)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 346 (417)
..+...|.+++-+... -++.|....+-|...|-+.|+-..|.+.+-+--.- ++-|..+...|...|....-++++..
T Consensus 571 led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred hhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 8899999999877753 55667888899999999999999998876654432 56688889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHHCCCC-ChhhHHHHHHHHHhh
Q 014860 347 NLWEMIEKQRPVDFITYRTVLDEIC-RRGRAGEAMKLLKELQNKNLI-DGYTYTKLLDVLEDD 407 (417)
Q Consensus 347 ~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~ 407 (417)
+|++..- +.|+..-|..||..|. +.|++.+|..+++....+ +| |......|++.+.+-
T Consensus 648 y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dl 707 (840)
T KOG2003|consen 648 YFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccc
Confidence 9987654 6899999998887664 689999999999988765 65 888888888877654
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.07 E-value=4.8e-07 Score=80.85 Aligned_cols=246 Identities=12% Similarity=0.072 Sum_probs=196.7
Q ss_pred ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCcc
Q 014860 149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNT 228 (417)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 228 (417)
..|++.+|+++...-.+.+. .....|-.-.++-.+.|+.+.+-.++.+..+. .-.++...+-+........|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d-- 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRD-- 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCC--
Confidence 57999999999999877765 34456667778888999999999999999885 224566778888889999999
Q ss_pred chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH-------HHHHHHHHHHH
Q 014860 229 YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS-------FSYDYLIHGLC 301 (417)
Q Consensus 229 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~li~~~~ 301 (417)
.+.|..-.+++.+.+ +-+..+......+|.+.|++.....++..+.+ .+.-.+. .+|..++.-..
T Consensus 169 ------~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 169 ------YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred ------chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876 55778899999999999999999999999998 6665554 46777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------------------
Q 014860 302 AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP------------------------ 357 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------------------ 357 (417)
..+..+.-...|++.-.+ .+-+...-.+++.-+.++|+.++|.++..+..+++..
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHH
Confidence 777777666677766544 4446777788888999999999999988876654322
Q ss_pred ------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcCcc
Q 014860 358 ------VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNS 411 (417)
Q Consensus 358 ------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~~ 411 (417)
-++..+.+|-..|.+.+.|.+|.+.|+.-.+.+ |+.++|+-+-+++.+.+...
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-PSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHcCChH
Confidence 244667888889999999999999999666543 78899999999998774433
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.07 E-value=7.8e-07 Score=87.06 Aligned_cols=281 Identities=14% Similarity=0.097 Sum_probs=211.3
Q ss_pred HHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860 91 FRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 91 ~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (417)
+.+.+...|.. ..|..|...|-..|+.++++..+-.+... -+-|...|..+-....+.|++++|.-.+.+.++..+
T Consensus 162 ~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p- 238 (895)
T KOG2076|consen 162 LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP- 238 (895)
T ss_pred HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-
Confidence 33455555544 57889999999999999999987766432 366889999999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-H----HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-I----RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ 244 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~----~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~ 244 (417)
++...+---+..|-+.|+...|..-|.++-.. .+|. . ..--.++..+...++ .+.|.+.++.
T Consensus 239 -~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----~p~~d~er~~d~i~~~~~~~~~~~~--------~e~a~~~le~ 305 (895)
T KOG2076|consen 239 -SNWELIYERSSLYQKTGDLKRAMETFLQLLQL----DPPVDIERIEDLIRRVAHYFITHNE--------RERAAKALEG 305 (895)
T ss_pred -cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHH
Confidence 66666667778899999999999999999875 1222 2 222335566777777 6777777777
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----------------------------------------
Q 014860 245 MVND-GIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV----------------------------------------- 282 (417)
Q Consensus 245 m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------------------------------------- 282 (417)
.... +-..+...++++...|.+...++.|......+..
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 6652 2244556677777777777777766665555433
Q ss_pred -------------------hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 283 -------------------VYN--YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 283 -------------------~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 341 (417)
..+ +.-+...|.-+..+|...|++.+|+.+|..+...-..-+...|--+.++|-..|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 011 11234456677888999999999999999999875555788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 342 EETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 342 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
++|.+.|+..... .|+. ..--.|-..+-+.|+.++|.+++..|..-
T Consensus 466 e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 9999999999875 3443 34455667788999999999999997643
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.2e-08 Score=85.89 Aligned_cols=230 Identities=11% Similarity=0.031 Sum_probs=189.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH-HHHHH
Q 014860 141 HIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY-NILFT 219 (417)
Q Consensus 141 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~-~~li~ 219 (417)
+-+.+.|.+.|.+.+|++.++...+.- |-+.||-.|-..|.+...++.|+.+|.+-.+. .|..+|| .-+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~-----fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-----FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----CCchhhhhhhhHH
Confidence 346778889999999999998887764 66788999999999999999999999998875 5555554 45667
Q ss_pred HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 014860 220 AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG 299 (417)
Q Consensus 220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 299 (417)
.+-..++ .++|.++|+...+.. +.++....++-.+|.-.++.+.|++.++++.+ .|+ -+...|+.+--+
T Consensus 299 i~eam~~--------~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLC 367 (478)
T KOG1129|consen 299 IHEAMEQ--------QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLC 367 (478)
T ss_pred HHHHHHh--------HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHH
Confidence 7777888 999999999988765 45677777888889999999999999999988 676 566788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860 300 LCAQGRTKNARELCDEMKRKGFVPSS--KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG 377 (417)
Q Consensus 300 ~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 377 (417)
|.-.++++-++--|.+....-..|+. ..|-.+-......|++..|.+.|+-..... .-+...++.|.-.-.+.|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence 88899999999999988876555553 457777777788999999999999888762 334568888888888999999
Q ss_pred HHHHHHHHHHHCC
Q 014860 378 EAMKLLKELQNKN 390 (417)
Q Consensus 378 ~A~~~~~~m~~~~ 390 (417)
+|..+++......
T Consensus 447 ~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 447 GARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHhhhhC
Confidence 9999999887764
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=1.2e-06 Score=79.33 Aligned_cols=149 Identities=14% Similarity=0.014 Sum_probs=76.7
Q ss_pred CChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 115 EDPLVCLELFNWASKQPRFRHD--ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
...+.++.-+..+.......|+ ...|......+...|+.++|...|++..+..+ .+...|+.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHH
Confidence 4455566666555433322222 23344555555566666666666666655543 3455666666666666666666
Q ss_pred HHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 193 VYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN 271 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 271 (417)
...|+...+. .| +..+|..+...+...|+ +++|.+.|+...+.. |+..........+...++.+
T Consensus 118 ~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~--------~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~ 182 (296)
T PRK11189 118 YEAFDSVLEL-----DPTYNYAYLNRGIALYYGGR--------YELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPK 182 (296)
T ss_pred HHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHH
Confidence 6666666553 23 34455555555556666 666666666655442 32221111111223344556
Q ss_pred HHHHHHHHh
Q 014860 272 DALRIFHQM 280 (417)
Q Consensus 272 ~a~~~~~~m 280 (417)
+|.+.|...
T Consensus 183 ~A~~~l~~~ 191 (296)
T PRK11189 183 QAKENLKQR 191 (296)
T ss_pred HHHHHHHHH
Confidence 666655443
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=1.2e-06 Score=79.33 Aligned_cols=235 Identities=14% Similarity=-0.004 Sum_probs=137.2
Q ss_pred CChhHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCcc
Q 014860 151 KMYQEMDDVVNQMLATPSFCG--TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNT 228 (417)
Q Consensus 151 ~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 228 (417)
+..+.+..-+.+++......| ....|..+...|.+.|+.++|...|++..+. -+.+...|+.+...+...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~-- 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGN-- 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCC--
Confidence 345556666666665432212 2345666667777778888888877777764 13346777777777888887
Q ss_pred chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 229 YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN 308 (417)
Q Consensus 229 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 308 (417)
+++|.+.|+...+.. +-+..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++
T Consensus 114 ------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~ 183 (296)
T PRK11189 114 ------FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQ 183 (296)
T ss_pred ------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHH
Confidence 788888887777653 223556666777777778888888877777552 2332212222222344567777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC--CC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 014860 309 ARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE---KQR--PV-DFITYRTVLDEICRRGRAGEAMKL 382 (417)
Q Consensus 309 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p-~~~~~~~li~~~~~~g~~~~A~~~ 382 (417)
|.+.|.+..... .|+...+ .+.. ...|+..++ +.+..+.+ ... .| ....|..+...+.+.|+.++|...
T Consensus 184 A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 184 AKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred HHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 877776544322 2222111 2222 223444333 23333332 111 11 234677777777788888888888
Q ss_pred HHHHHHCCCCChhhHHHHHHHHHh
Q 014860 383 LKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 383 ~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
|++....++++...+...+--+.+
T Consensus 259 ~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 259 FKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHH
Confidence 888777776666666665444443
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=3e-06 Score=81.60 Aligned_cols=273 Identities=14% Similarity=0.138 Sum_probs=180.8
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh-
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA- 186 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~- 186 (417)
..++...|++++|++.+..-. ..+.............+.+.|+.++|..++..+++.++ .|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhhc
Confidence 345678899999999997653 22334455566677888999999999999999999874 4555555665655322
Q ss_pred ----CCHHHHHHHHHHhHhCCCCCCCC--------CHHHHHHHHHHHHh----cCCccchh---hh-----hHHHHHHHH
Q 014860 187 ----RKLSRAVYVFKYMKNSRNLECRP--------SIRSYNILFTAFLS----RGKNTYIN---HV-----YMETIRCLF 242 (417)
Q Consensus 187 ----g~~~~a~~~~~~m~~~~~~g~~p--------~~~~~~~li~~~~~----~g~~~~~~---~~-----~~~~a~~~~ 242 (417)
...+....+|+++.+.-.....| +...|...+..|.. .|-++.-. .. -.+-..+++
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 25777888888886641000000 11233333333332 22111000 00 022333333
Q ss_pred HHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCC
Q 014860 243 KQMV----NDG----------IEPDIF--SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGR 305 (417)
Q Consensus 243 ~~m~----~~g----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~ 305 (417)
.... ..+ -.|+.. ++.-+-..|-..|++++|++.++...+. .|+ +..|..-...+-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCC
Confidence 3333 221 134443 4455567788999999999999988762 354 6778888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHHcCCHh
Q 014860 306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI------TY--RTVLDEICRRGRAG 377 (417)
Q Consensus 306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~ 377 (417)
+++|.+.++........ |...-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999887544 77777778889999999999999999988876533222 12 33445788999999
Q ss_pred HHHHHHHHHHH
Q 014860 378 EAMKLLKELQN 388 (417)
Q Consensus 378 ~A~~~~~~m~~ 388 (417)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988777654
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.93 E-value=3.4e-07 Score=87.10 Aligned_cols=243 Identities=13% Similarity=0.111 Sum_probs=175.0
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcC----CCC-CCCHHHH-HHHHHHHHccCChhHHHHHHHHHHcC-----CCCCC
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQ----PRF-RHDASTY-HIMTRKLGAAKMYQEMDDVVNQMLAT-----PSFCG 171 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~ 171 (417)
+...+...|...|+++.|..++.+..+. .|. .|...+. +.+...|...+++++|..+|+.+... |...|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3445788889999999999999998653 221 2333332 23566788999999999999998874 22112
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--CCC-CCCHH-HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 172 -TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--LEC-RPSIR-SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 172 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~g~-~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
-..+++.|..+|.+.|++++|...+++..+... .|. .|.+. .++.+...+...++ +++|..+++...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--------~Eea~~l~q~al 352 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--------YEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--------hhHHHHHHHHHH
Confidence 245677788899999999988877776654310 121 23333 36677888888888 888888888665
Q ss_pred HC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 247 ND---GIEP----DIFSLNSMIKGYILSNHVNDALRIFHQMGVVY----N--YLPNSFSYDYLIHGLCAQGRTKNARELC 313 (417)
Q Consensus 247 ~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~l~ 313 (417)
+. -+.+ -..+++.|-..|...|++++|+++++...... | ..-....++.|-..|.+.+++++|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 31 1122 24688999999999999999999999875422 1 1122456788888999999999999999
Q ss_pred HHHH----HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 314 DEMK----RKGF-VPS-SKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 314 ~~m~----~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
.+-. ..|. .|+ ..+|..|...|...|++++|.++.+....
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8754 3332 233 46789999999999999999999887763
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=3.5e-06 Score=70.11 Aligned_cols=209 Identities=10% Similarity=-0.028 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI 254 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 254 (417)
+...|.-.|.+.|+...|.+-+++..+.. +-+..+|..+...|.+.|+ .+.|.+-|+...+.. +-+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----Ps~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~-p~~G 103 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----PSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLA-PNNG 103 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcC-CCcc
Confidence 34456667778888888888888887752 3346677788888888888 788888888777654 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA 334 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 334 (417)
.+.|..-.-+|..|++++|...|+.........--..+|..+.-+..+.|+.+.|.+.|++-.+.... ...+.-.+...
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~ 182 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARL 182 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHH
Confidence 67777777778888888888888877664444445567777777777788888888888877765322 34566677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHH
Q 014860 335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTK 399 (417)
Q Consensus 335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ 399 (417)
..+.|++-.|..+++.....+. ++.......|+.--+.|+.+.+.+.=..+ .+.+|....|-.
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL-~r~fP~s~e~q~ 245 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL-QRLFPYSEEYQT 245 (250)
T ss_pred HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCcHHHHh
Confidence 7788888888888877776654 77777777777777778877666554333 344665555443
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.5e-07 Score=80.42 Aligned_cols=230 Identities=9% Similarity=0.020 Sum_probs=191.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFA 184 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 184 (417)
+.+...|.+-|-+.+|.+.|+...++ .|.+.||..+-++|-+..+.+.|+.++.+-.+.-+ -|+....-+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHH
Confidence 45677788999999999999988765 48899999999999999999999999999877643 35445556778889
Q ss_pred HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY 264 (417)
Q Consensus 185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 264 (417)
..++.++|.++|++..+. .+.++.....+..+|.-.++ .|.|+..|+++.+.|+ -+...|+.+--+|
T Consensus 302 am~~~~~a~~lYk~vlk~----~~~nvEaiAcia~~yfY~~~--------PE~AlryYRRiLqmG~-~speLf~NigLCC 368 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKL----HPINVEAIACIAVGYFYDNN--------PEMALRYYRRILQMGA-QSPELFCNIGLCC 368 (478)
T ss_pred HHHhHHHHHHHHHHHHhc----CCccceeeeeeeeccccCCC--------hHHHHHHHHHHHHhcC-CChHHHhhHHHHH
Confidence 999999999999999886 24466777778888888888 9999999999999996 4777888888889
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 265 ILSNHVNDALRIFHQMGVVYNYLPN--SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
.-.+++|.++--|.+... .-..|+ ...|-.+-......|++..|.+-|+-....+-. +...+|.|.-.-.+.|+++
T Consensus 369 ~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchH
Confidence 999999999998888765 222333 456888888888899999999999988876433 6788999988889999999
Q ss_pred HHHHHHHHHHHc
Q 014860 343 ETVKNLWEMIEK 354 (417)
Q Consensus 343 ~A~~~~~~m~~~ 354 (417)
+|..+++.....
T Consensus 447 ~Arsll~~A~s~ 458 (478)
T KOG1129|consen 447 GARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhhhh
Confidence 999999987764
No 60
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=2.8e-09 Score=61.62 Aligned_cols=32 Identities=38% Similarity=0.730 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 355 QRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 355 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 61
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.5e-09 Score=61.25 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEM 351 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (417)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555666666666666666665555555
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1.4e-06 Score=86.02 Aligned_cols=276 Identities=14% Similarity=0.102 Sum_probs=204.0
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA 186 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 186 (417)
+...+-..++.+.|-+.|..+.+.. +-=+..|-.+....-..+...+|...+........ .++..+..+...+.+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhh
Confidence 3444456678999999999997654 22344455555444456888999999999988776 5666777777899999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc----CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR----GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK 262 (417)
Q Consensus 187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~----g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 262 (417)
..+..|.+-|+.+.+.. ...+|+.+.-.|-+.|.+. .+.+..++...++|+++|.+..+.. +-|...-|-+--
T Consensus 578 ~~~~~a~k~f~~i~~~~--~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgi 654 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKT--STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGI 654 (1018)
T ss_pred hhhcccccHHHHHHhhh--ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhh
Confidence 99999999888777652 2235666655555544433 2233345566999999999998775 457777777888
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~ 341 (417)
.++..|+++.|..||.+..+. . .-+..+|-.+.++|...|++..|+++|+...+. .-.-+....+.|.+++.+.|.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa-~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREA-T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHH-H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 888999999999999999883 2 235568999999999999999999999976654 4455788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------------HHcCCHhHHHHHHHHHHHCCC
Q 014860 342 EETVKNLWEMIEKQRPVDFITYRTVLDEI------------------CRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~------------------~~~g~~~~A~~~~~~m~~~~~ 391 (417)
.+|.+.+.........-...-||..+... ...+..+.|.++|.+|...+-
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999888877653333334455443321 123567889999999988765
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=1.8e-05 Score=74.02 Aligned_cols=262 Identities=11% Similarity=0.027 Sum_probs=133.5
Q ss_pred HHhccCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---
Q 014860 110 VMTLQEDPLVCLELFNWASKQPRFRHDA-STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE--- 185 (417)
Q Consensus 110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~--- 185 (417)
.+...++++.+...+....+...-.++. +........+...|++++|.+.++...+..+ .+...+.. ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~~~~~~~~ 91 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HLGAFGLGD 91 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hHHHHHhcc
Confidence 3344455666555555543332222232 2222223345567777888777777766543 33333332 212222
Q ss_pred -hCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 186 -ARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 186 -~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 263 (417)
.+..+.+.+.++... ...|+ ......+...+...|+ +++|.+.+++..+.. +.+...+..+-..
T Consensus 92 ~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 92 FSGMRDHVARVLPLWA-----PENPDYWYLLGMLAFGLEEAGQ--------YDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred cccCchhHHHHHhccC-----cCCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 344444444444311 12333 3344455566777777 778888887777664 3345566677777
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHh
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPNS--FSYDYLIHGLCAQGRTKNARELCDEMKRKGF-VPSSKSY-N--SLVSALAL 337 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~-~--~li~~~~~ 337 (417)
+...|++++|...+++........++. ..|..+...+...|++++|..++++...... .+..... + .++.-+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 777788888887777765522112222 2344566677777888888888877653322 1112111 1 22333333
Q ss_pred cCCHHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 338 NGEVEETVKN--LWEMIEKQR--PVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 338 ~g~~~~A~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
.|..+.+.++ +........ ............++...|+.++|..+++.+..
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3432222222 111111100 11112222455566677777778877777765
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=5.3e-06 Score=75.36 Aligned_cols=209 Identities=12% Similarity=0.056 Sum_probs=165.9
Q ss_pred HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
...+|++++|.+.+.+.+..+.. -....||. .-.+-..|++++|+..|-.+-.. +.-+..+.-.+...|-...+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndas-c~ealfni-glt~e~~~~ldeald~f~klh~i----l~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDAS-CTEALFNI-GLTAEALGNLDEALDCFLKLHAI----LLNNAEVLVQIANIYELLED 573 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchH-HHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhC
Confidence 34689999999999999886542 22333443 33466789999999999887653 34467777778888888888
Q ss_pred ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT 306 (417)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 306 (417)
...|++++-+.... ++.|+.+..-|-+.|-+.|+-..|.+.+-+--. =++-+..|...|...|....-+
T Consensus 574 --------~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 574 --------PAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred --------HHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHH
Confidence 88899888766543 466788899999999999999999988765533 3456788888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 307 KNARELCDEMKRKGFVPSSKSYNSLVSAL-ALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 307 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
+++...|++.-- +.|+..-|..+|..| .+.|++.+|+++++....+ ++-|......|++.+...|.
T Consensus 643 ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999998654 689999999988665 4689999999999998875 77888888999998887775
No 65
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=5e-07 Score=80.97 Aligned_cols=250 Identities=16% Similarity=0.111 Sum_probs=165.8
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS 190 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 190 (417)
.--.|++..|+.-.+ .. ...-..+......+.+++...|+.+. +..++.... . |.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~-~-~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSS-S-PELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTS-S-CCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCC-C-hhHHHHHHHHHHHhCccchH
Confidence 345788888887665 32 22112345566677888889998775 445554444 2 66666666655554445566
Q ss_pred HHHHHHHHhHhCCCCCCCCCHHHHHH-HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 191 RAVYVFKYMKNSRNLECRPSIRSYNI-LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH 269 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~~~~~-li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 269 (417)
.++.-+++.... +...+..++.. ....+...|+ +++|++++..- .+.......+..|.+.++
T Consensus 84 ~~l~~l~~~~~~---~~~~~~~~~~~~~A~i~~~~~~--------~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R 146 (290)
T PF04733_consen 84 SALEELKELLAD---QAGESNEIVQLLAATILFHEGD--------YEEALKLLHKG------GSLELLALAVQILLKMNR 146 (290)
T ss_dssp CHHHHHHHCCCT---S---CHHHHHHHHHHHHCCCCH--------HHHHHCCCTTT------TCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHh---ccccccHHHHHHHHHHHHHcCC--------HHHHHHHHHcc------CcccHHHHHHHHHHHcCC
Confidence 666666555443 22222223322 2234455677 99999888642 456777888999999999
Q ss_pred HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 345 (417)
++.|.+.++.|.+ . ..| .+...+..+|.. .+++.+|..+|+++.+. ..++..+.|.+..++...|++++|.
T Consensus 147 ~dlA~k~l~~~~~-~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 147 PDLAEKELKNMQQ-I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HHHHHHHHHHHHC-C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHh-c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999986 2 234 344445555543 34699999999998765 6678999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHCC
Q 014860 346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRA-GEAMKLLKELQNKN 390 (417)
Q Consensus 346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~ 390 (417)
+++.+..+.. +-+..+...+|......|+. +.+.+++.++....
T Consensus 222 ~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 222 ELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 9999987652 34566777788888888887 66788999988765
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.6e-05 Score=74.30 Aligned_cols=271 Identities=12% Similarity=0.033 Sum_probs=206.4
Q ss_pred HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860 110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL 189 (417)
Q Consensus 110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 189 (417)
-+-..+++.+++++++.+.+..+ ++...+..-|..+...|+..+-..+=.++.+..+ ....+|-++.-.|.-.|+.
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP--~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP--SKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCCcchhhHHHHHHHhcCc
Confidence 34567889999999999987774 5556666666788899988888888788877764 5678899999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHH
Q 014860 190 SRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND--GI-EPDIFSLNSMIKGYI 265 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~--g~-~p~~~~~~~li~~~~ 265 (417)
++|.+.|...... .|. ...|-..-..|+-.|. .|+|+..+...-+. |. .|.. -+---|.
T Consensus 329 seARry~SKat~l-----D~~fgpaWl~fghsfa~e~E--------hdQAmaaY~tAarl~~G~hlP~L----Ylgmey~ 391 (611)
T KOG1173|consen 329 SEARRYFSKATTL-----DPTFGPAWLAFGHSFAGEGE--------HDQAMAAYFTAARLMPGCHLPSL----YLGMEYM 391 (611)
T ss_pred HHHHHHHHHHhhc-----CccccHHHHHHhHHhhhcch--------HHHHHHHHHHHHHhccCCcchHH----HHHHHHH
Confidence 9999999988764 333 5678899999999998 99999888766542 21 2322 2233477
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHhcC
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----G-FV-PSSKSYNSLVSALALNG 339 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~~~~~li~~~~~~g 339 (417)
+.+..+.|.++|.+... -.+-|....+-+--.....+.+.+|..+|...... + -+ --..+++.|-.+|.+.+
T Consensus 392 ~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 88999999999998854 33446666777666667788899999999876622 1 11 13457888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
..++|+..+++.... .+.|..++.++.-.|...|+++.|...|++-.-.. |+..+-..++..+.
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~-p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK-PDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 999999999998876 46688899999999999999999999999877654 44444455554443
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=2.9e-05 Score=72.63 Aligned_cols=264 Identities=12% Similarity=0.024 Sum_probs=166.4
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHH---HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHI---MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
+...|+++.|.++++...+.. +.|...+.. ........+..+.+.+.+.. ..+..+........+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 367899999999999886553 345545442 11122234566666666654 22222133455556777889999
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHH
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI-EPDI--FSLNSMIKGY 264 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~ 264 (417)
++++|.+.+++..+. -+.+...+..+...+...|+ +++|...+++..+... .++. ..|..+...+
T Consensus 129 ~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~--------~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 129 QYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGR--------FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred CHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCC--------HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 999999999999986 24456778889999999999 9999999998886532 2332 3455678889
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHh
Q 014860 265 ILSNHVNDALRIFHQMGVVYNYLPNSFSY-D--YLIHGLCAQGRTKNAREL--CDEMKRKGF--VPSSKSYNSLVSALAL 337 (417)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~--~li~~~~~~g~~~~A~~l--~~~m~~~g~--~p~~~~~~~li~~~~~ 337 (417)
...|++++|.+++++........+..... + .++.-+...|....+.++ +........ ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 99999999999999985422212222222 2 333334444544333333 221111111 1111222356777888
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCH---HHHHHHHH--HHHHcCCHhHHHHHHHHHHHCC
Q 014860 338 NGEVEETVKNLWEMIEKQRP---VDF---ITYRTVLD--EICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~---p~~---~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.|+.++|...++.+...... -.. .+-..++. ++...|+.++|.+++.+.....
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999998775222 011 11122233 4568999999999998877653
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.77 E-value=0.00011 Score=70.02 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-------------- 354 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 354 (417)
.+-.|-.|...=-+.|.+-.|..++++-.-++.+ |...|-..|++-.+.|+.+.|..++.+..+.
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 3344444544445555566666666665555433 5556666666666666666665555544331
Q ss_pred ---------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 355 ---------------QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 355 ---------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
.+.-|++..-++...+-....+++|.+.|.+..+.+.-...+|.-+..-..
T Consensus 797 e~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL 862 (913)
T ss_pred ccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH
Confidence 122344445555555666666777777777776665434444444444333
No 69
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.75 E-value=4.4e-06 Score=82.65 Aligned_cols=282 Identities=13% Similarity=0.114 Sum_probs=197.5
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCC--CCCCCHH------HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQP--RFRHDAS------TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE 173 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~--~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 173 (417)
...|.+....-..|++..|...|....... ...+|.. +--.+...+-..++++.|.+.+..+.+..+. =+
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~--YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG--YI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch--hH
Confidence 344555555667888888988888875431 1123331 1222344555677889999999988886531 12
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC-CCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND-GIEP 252 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~-g~~p 252 (417)
..|--+..+....+...+|...+.+.... ...+...|..+-..+....+ +..|.+-|....+. ...+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~----d~~np~arsl~G~~~l~k~~--------~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNI----DSSNPNARSLLGNLHLKKSE--------WKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhc----ccCCcHHHHHHHHHHHhhhh--------hcccccHHHHHHhhhccCC
Confidence 23333332333346677888888888774 34556667677778888777 77888766665543 2235
Q ss_pred CHHHHHHHHHHHHh------------cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860 253 DIFSLNSMIKGYIL------------SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG 320 (417)
Q Consensus 253 ~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 320 (417)
|.++.-+|-+.|.. .+..++|+++|.+..+ .-+.|...-|-+--.++..|++.+|.++|....+..
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 76666666665542 2456788899888865 234577777888888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-ChhhHH
Q 014860 321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI-DGYTYT 398 (417)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~ 398 (417)
. -+..+|-.+..+|..+|++..|+++|+...+. .-.-+....+.|.+++-+.|.+.+|.+.+.......+- +..-||
T Consensus 677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 4 25567999999999999999999999987766 54557778899999999999999999998887776552 444454
Q ss_pred HH
Q 014860 399 KL 400 (417)
Q Consensus 399 ~l 400 (417)
..
T Consensus 756 ~a 757 (1018)
T KOG2002|consen 756 LA 757 (1018)
T ss_pred HH
Confidence 43
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=7.2e-06 Score=75.30 Aligned_cols=221 Identities=14% Similarity=0.070 Sum_probs=129.7
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
..|++..|.+-|+...... +.+...|-.+..+|....+.++.++.|+...+.+. -|..+|..-..++.-.+++++|
T Consensus 338 L~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHH
Confidence 3466666666666665433 22233366666667777777777777777776665 3445565666666666677777
Q ss_pred HHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 193 VYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN 271 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 271 (417)
..=|++..+- .| ++..|--+--+.-+.++ +++++..|++.++. ++--+.+|+..-..+...++++
T Consensus 414 ~aDF~Kai~L-----~pe~~~~~iQl~~a~Yr~~k--------~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 414 IADFQKAISL-----DPENAYAYIQLCCALYRQHK--------IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHhhc-----ChhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHH
Confidence 7777777654 23 34444444445555566 77777777776654 2344566777777777777777
Q ss_pred HHHHHHHHhhhhCC----CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 272 DALRIFHQMGVVYN----YLPNS--FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 272 ~a~~~~~~m~~~~~----~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 345 (417)
+|.+.|+...+... +-.+. ..--+++-.- -.+++..|+.+++...+...+ ....|..|...-.+.|++++|+
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHH
Confidence 77777776654211 11111 1111222111 226667777777766654322 3456677777777777777777
Q ss_pred HHHHHHHH
Q 014860 346 KNLWEMIE 353 (417)
Q Consensus 346 ~~~~~m~~ 353 (417)
++|++-..
T Consensus 558 elFEksa~ 565 (606)
T KOG0547|consen 558 ELFEKSAQ 565 (606)
T ss_pred HHHHHHHH
Confidence 77776543
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.9e-05 Score=73.92 Aligned_cols=259 Identities=10% Similarity=0.007 Sum_probs=196.7
Q ss_pred HHHhcCCCCCC-HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC
Q 014860 93 CAVSELPPRFN-NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG 171 (417)
Q Consensus 93 ~~l~~~p~~~~-~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 171 (417)
..+...|-... +..-|..+...|+..+-..+=..+.... +..+.+|-.+.-.|.-.|+..+|++.|......+. .
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~--~ 344 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP--T 344 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc--c
Confidence 34444444433 3344666777788777777777776544 67788899988888888999999999999877654 3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
=...|-...+.|+-.|.-|+|+..|...-+- .+-....+--+-.-|.+.+. .+.|.+.|.+..... +
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl----~~G~hlP~LYlgmey~~t~n--------~kLAe~Ff~~A~ai~-P 411 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL----MPGCHLPSLYLGMEYMRTNN--------LKLAEKFFKQALAIA-P 411 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh----ccCCcchHHHHHHHHHHhcc--------HHHHHHHHHHHHhcC-C
Confidence 4578999999999999999999988877653 11122223344556788888 999999999888654 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN-Y----LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 326 (417)
-|+.+.+-+--.....+.+.+|...|+.....-. + ..-..+++.|-.+|.+.+++++|+..++...... +-|..
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~ 490 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAS 490 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchh
Confidence 5777888877777778899999999987752110 1 1234568889999999999999999999988774 44899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
++.++.-.|...|+++.|.+.|.+... +.||..+-..++..+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 999999999999999999999998775 5788877777776443
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=8.7e-07 Score=79.43 Aligned_cols=221 Identities=13% Similarity=0.098 Sum_probs=149.1
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 014860 106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE 185 (417)
Q Consensus 106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 185 (417)
.+.+++...|+.+.++.-. .... .|.......+...+...++-+.+..-+...........+....-.....+..
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei---~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEI---KKSS--SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS----TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCChhHHHHHh---ccCC--ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3566667777777655433 2222 6777777666655554455555555555444443321233333334456677
Q ss_pred hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860 186 ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI 265 (417)
Q Consensus 186 ~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 265 (417)
.|++++|++++..- .+.......+..+.+.++ .+.|.+.++.|.+.+ .| .+...+..++.
T Consensus 115 ~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R--------~dlA~k~l~~~~~~~--eD-~~l~qLa~awv 174 (290)
T PF04733_consen 115 EGDYEEALKLLHKG---------GSLELLALAVQILLKMNR--------PDLAEKELKNMQQID--ED-SILTQLAEAWV 174 (290)
T ss_dssp CCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT---------HHHHHHHHHHHHCCS--CC-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC--Cc-HHHHHHHHHHH
Confidence 89999999988654 256777888999999999 999999999998753 33 34444555554
Q ss_pred h----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 266 L----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 266 ~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 341 (417)
. .+.+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++.+..+.+.. |..+...++.+....|+.
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-T
T ss_pred HHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCC
Confidence 3 3468999999999976 45578888999999999999999999999998765433 667777888888888887
Q ss_pred -HHHHHHHHHHHHc
Q 014860 342 -EETVKNLWEMIEK 354 (417)
Q Consensus 342 -~~A~~~~~~m~~~ 354 (417)
+.+.+++.++...
T Consensus 252 ~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 252 TEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHCHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 6778888888765
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.70 E-value=2.5e-05 Score=65.17 Aligned_cols=191 Identities=10% Similarity=-0.047 Sum_probs=101.0
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860 109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK 188 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 188 (417)
-.|...|+...|..-++++.+.. +-+..++..+...|-+.|..+.|.+-|+...+..+ .+..+.|.....+|..|+
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHHHhCCC
Confidence 34455666666666666655443 34455555555556666666666666666655543 344555555555666666
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 268 (417)
+++|...|++....+..|. -..+|..+.-+..+.|+ .+.|.+.|++..+.. +-...+.-.+.....+.|
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~--~s~t~eN~G~Cal~~gq--------~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 119 PEEAMQQFERALADPAYGE--PSDTLENLGLCALKAGQ--------FDQAEEYLKRALELD-PQFPPALLELARLHYKAG 187 (250)
T ss_pred hHHHHHHHHHHHhCCCCCC--cchhhhhhHHHHhhcCC--------chhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence 6666666666655532222 23445555555555666 566666666555443 122334444555555555
Q ss_pred CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEM 316 (417)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 316 (417)
++..|...++.... +..++....-..|..-.+.|+.+.+-+.=..+
T Consensus 188 ~y~~Ar~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 188 DYAPARLYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred cchHHHHHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55555555555544 12245544444455555555555444443333
No 74
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.69 E-value=0.00015 Score=69.32 Aligned_cols=266 Identities=11% Similarity=-0.007 Sum_probs=207.8
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 181 (417)
.+|..-.+.|.+.+.++.|..+|..+.+. ++-+...|......=-..|..++...+++.....-. .....|-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHH
Confidence 46677777777888888888888887644 356677777777776778888999999998887654 45566777777
Q ss_pred HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860 182 FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI 261 (417)
Q Consensus 182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 261 (417)
-+-.+|++..|..++...-+. .+-+...|-+-+..-..+.. ++.|..+|.+.... .|+..+|.--+
T Consensus 593 e~w~agdv~~ar~il~~af~~----~pnseeiwlaavKle~en~e--------~eraR~llakar~~--sgTeRv~mKs~ 658 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEA----NPNSEEIWLAAVKLEFENDE--------LERARDLLAKARSI--SGTERVWMKSA 658 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhcccc--------HHHHHHHHHHHhcc--CCcchhhHHHh
Confidence 788889999999999998875 23367788888998888888 99999999988765 57788887777
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 262 KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 341 (417)
..-.-.+..++|.+++++..+. ++.-...|..+-..+-+.++.+.|.+.|..=.+. ++-....|-.|.+.--+.|.+
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcch
Confidence 7677788999999999888763 3334556777777788888888888877654433 333566788888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 342 EETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
-+|..+++...-+ -+-|...|-..|+.=.+.|+.+.|..+..+..+.
T Consensus 736 ~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 736 VRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred hhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999988776 3557788999999999999999999888777665
No 75
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=2.4e-05 Score=80.20 Aligned_cols=234 Identities=13% Similarity=0.124 Sum_probs=172.7
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-----CHHHHHHHHHHHHhcCCccc
Q 014860 155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-----SIRSYNILFTAFLSRGKNTY 229 (417)
Q Consensus 155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-----~~~~~~~li~~~~~~g~~~~ 229 (417)
.|.+.-..+...+ .+...|-..|....+.++.++|.+++++.... +.+ -...|.++++.-..-|.
T Consensus 1443 saeDferlvrssP---NSSi~WI~YMaf~LelsEiekAR~iaerAL~t----IN~REeeEKLNiWiA~lNlEn~yG~--- 1512 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP---NSSILWIRYMAFHLELSEIEKARKIAERALKT----INFREEEEKLNIWIAYLNLENAYGT--- 1512 (1710)
T ss_pred CHHHHHHHHhcCC---CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----CCcchhHHHHHHHHHHHhHHHhhCc---
Confidence 3444444444432 34677888888888999999999999988764 222 13468888888888887
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 230 INHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNA 309 (417)
Q Consensus 230 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 309 (417)
-+...++|++..+.. -.-.+|..|...|.+.+..++|-++++.|.++.+ -....|...+..+.+.++-+.|
T Consensus 1513 -----eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1513 -----EESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred -----HHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHH
Confidence 788888998888752 2345778889999999999999999999988665 5667888999999999999999
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 310 RELCDEMKRKGFV-PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 310 ~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
..++.+..+.=.+ -......-.+..-.+.|+.+.+..+|+..... .+--...|+..|+.=.+.|+.+.+..+|++...
T Consensus 1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999888765111 12344455556667889999999999988876 233456899999999999999999999999999
Q ss_pred CCC-C-Chh-hHHHHHHHHHhhcC
Q 014860 389 KNL-I-DGY-TYTKLLDVLEDDFG 409 (417)
Q Consensus 389 ~~~-p-~~~-t~~~ll~~~~~~~~ 409 (417)
.++ | ... -|...|+ |.+..|
T Consensus 1663 l~l~~kkmKfffKkwLe-yEk~~G 1685 (1710)
T KOG1070|consen 1663 LKLSIKKMKFFFKKWLE-YEKSHG 1685 (1710)
T ss_pred cCCChhHhHHHHHHHHH-HHHhcC
Confidence 988 3 443 3444443 444434
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.65 E-value=5.2e-05 Score=73.23 Aligned_cols=233 Identities=14% Similarity=0.134 Sum_probs=160.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860 143 MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL 222 (417)
Q Consensus 143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~ 222 (417)
....+...|++++|++.+..-.+.-. ............+.+.|+.++|..+|..+.++ .|+...|-..+..+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHH
Confidence 34567789999999999977544332 45667778889999999999999999999987 566665554444443
Q ss_pred -hcCCccchhhhhHHHHHHHHHHH----------------------------------HHCCCCCCHHHHHHHHHHHHhc
Q 014860 223 -SRGKNTYINHVYMETIRCLFKQM----------------------------------VNDGIEPDIFSLNSMIKGYILS 267 (417)
Q Consensus 223 -~~g~~~~~~~~~~~~a~~~~~~m----------------------------------~~~g~~p~~~~~~~li~~~~~~ 267 (417)
-....+. ...+...++|+++ ...|++ .+|+.|-..|...
T Consensus 83 g~~~~~~~---~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSD---EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred hhhccccc---ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 2210000 0034444444444 334432 2344444455544
Q ss_pred CCHHHHHHHHHHhhhhC-------------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 014860 268 NHVNDALRIFHQMGVVY-------------NYLPNSF--SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSL 331 (417)
Q Consensus 268 g~~~~a~~~~~~m~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l 331 (417)
.+.+-..+++....... .-.|+.. ++..+...|-..|++++|++.+++..+. .|+ +..|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 55555555655553211 1124443 4456677788999999999999998886 455 6788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 332 VSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
.+.+-+.|++++|.+.++...... .-|...-+-.+..+.+.|++++|.+++...-..+.
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999999988762 24566667777888999999999999998887775
No 77
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.4e-05 Score=73.47 Aligned_cols=223 Identities=11% Similarity=0.077 Sum_probs=171.4
Q ss_pred HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+.-.|+.-.+.+-|+..++.... +...|--+..+|....+-++.++.|.+..+-. +-+..+|..--....-.++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld----p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD----PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC----CCCCchhHhHHHHHHHHHH
Confidence 34578888999999999988764 33347778888999999999999999998752 3356667776777777777
Q ss_pred ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT 306 (417)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 306 (417)
+++|..=|++..... +-+...|--+--+..+.+++++++..|++..+ .++....+|+.....+...+++
T Consensus 410 --------~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 410 --------YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred --------HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhH
Confidence 999999999988764 33556666666666788999999999999987 5667788999999999999999
Q ss_pred HHHHHHHHHHHHC-----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhH
Q 014860 307 KNARELCDEMKRK-----GFVPSSKSY--NSLVSALALNGEVEETVKNLWEMIEKQRPV-DFITYRTVLDEICRRGRAGE 378 (417)
Q Consensus 307 ~~A~~l~~~m~~~-----g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 378 (417)
+.|.+.|+...+. ++..+...+ -+++..=.+ +++..|.+++.+..+. .| ....|..|...-.+.|+.++
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHH
Confidence 9999999987753 222222222 222222233 8899999999998875 33 33578999999999999999
Q ss_pred HHHHHHHHHHC
Q 014860 379 AMKLLKELQNK 389 (417)
Q Consensus 379 A~~~~~~m~~~ 389 (417)
|.++|++-...
T Consensus 556 AielFEksa~l 566 (606)
T KOG0547|consen 556 AIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999986653
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00018 Score=65.01 Aligned_cols=267 Identities=9% Similarity=0.074 Sum_probs=155.2
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
..++...|...+-.+....-++-|.+....+.+.+...|+.++|...|+.....++ -+........-.+.+.|++++.
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp--y~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP--DNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh--hhhhhHHHHHHHHHhccCHhhH
Confidence 34444555555555544555788888888999999999999999999988877553 2222223333334466666666
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHH----------------------------------HHHhcCCccchhhhhHHHH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFT----------------------------------AFLSRGKNTYINHVYMETI 238 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~----------------------------------~~~~~g~~~~~~~~~~~~a 238 (417)
..+...+-... .-+...|-.-.. .+...++ .++|
T Consensus 286 ~~L~~~Lf~~~----~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------~~~A 353 (564)
T KOG1174|consen 286 SALMDYLFAKV----KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------HTQA 353 (564)
T ss_pred HHHHHHHHhhh----hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------hHHH
Confidence 66555554421 112222222222 2333333 4444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHH
Q 014860 239 RCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI-HGLC-AQGRTKNARELCDEM 316 (417)
Q Consensus 239 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~l~~~m 316 (417)
.--|+...... +-+...|.-|+..|...|++.+|.-+-++..+. ++.+..+.+.+- ..+. ...--++|.++++.-
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 44444444332 234445555555555555555554444433321 112222222220 1111 111234455554443
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChh
Q 014860 317 KRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGY 395 (417)
Q Consensus 317 ~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~ 395 (417)
.. +.|+ ....+.+...|...|..+++..+++.-... .||....+.|.+.+...+.+.+|+..|......+..+..
T Consensus 431 L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 431 LK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 32 3455 345677888888999999999999887764 689888899999999999999999999988887655666
Q ss_pred hHHHH
Q 014860 396 TYTKL 400 (417)
Q Consensus 396 t~~~l 400 (417)
+...+
T Consensus 507 sl~Gl 511 (564)
T KOG1174|consen 507 TLRGL 511 (564)
T ss_pred HHHHH
Confidence 65543
No 79
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=1.1e-05 Score=77.57 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=177.3
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860 133 FRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR 212 (417)
Q Consensus 133 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~ 212 (417)
++|--..=..+...+...|-...|..+++.+ ..|.-+|.+|+..|+..+|..+..+-.++ +||..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek-----~~d~~ 458 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK-----DPDPR 458 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC-----CCcch
Confidence 3333333444566777888888888888766 56777889999999999999888888775 68888
Q ss_pred HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860 213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292 (417)
Q Consensus 213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 292 (417)
.|..+.+......- +++|.++++..... .-..+-....+.++++++.+.|+.-.+... .-..+
T Consensus 459 lyc~LGDv~~d~s~--------yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np--lq~~~ 521 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSL--------YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP--LQLGT 521 (777)
T ss_pred hHHHhhhhccChHH--------HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc--cchhH
Confidence 88777776655544 88888888765432 111111112236889999998887655332 34557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR 372 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 372 (417)
|-.+-.+..+.++++.|.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+-. .-+-..|...+....+
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVD 599 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhh
Confidence 7777777888899999999999887642 2256889999999999999999999999998875 4455577788888889
Q ss_pred cCCHhHHHHHHHHHHHCCC--CChhhHHHHHHHHHhh
Q 014860 373 RGRAGEAMKLLKELQNKNL--IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~~~~~~ 407 (417)
.|.+++|.+.+.+|..... .|......++....+.
T Consensus 600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~ 636 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEG 636 (777)
T ss_pred cccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhh
Confidence 9999999999999877654 3666666666665544
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=0.00012 Score=75.44 Aligned_cols=241 Identities=9% Similarity=0.019 Sum_probs=153.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC---CCHHHHHHHHHHHHHhCCHHHH
Q 014860 116 DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC---GTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 192 (417)
.++.|-++-+.++.. +-+...|-.-|....+.++.++|+++.++.+..-... --...|.++++.-..-|.-+..
T Consensus 1440 ~pesaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 344455554444322 3355566666777777778888888877777653221 1234666777776677777777
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND 272 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 272 (417)
.++|++..+. --....|..|...|.+.++ .++|-++|+.|.+.= .-...+|...+..+.+..+-+.
T Consensus 1517 ~kVFeRAcqy-----cd~~~V~~~L~~iy~k~ek--------~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1517 KKVFERACQY-----CDAYTVHLKLLGIYEKSEK--------NDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred HHHHHHHHHh-----cchHHHHHHHHHHHHHhhc--------chhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHH
Confidence 7888887764 1123457777777877777 778888888877542 2456677777777777777777
Q ss_pred HHHHHHHhhhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 273 ALRIFHQMGVVYNYLPN---SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW 349 (417)
Q Consensus 273 a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (417)
|..++.+..+- .|. .....-.+..-.+.|+.+.+..+|+.....-.+ -...|+.+|++-.++|+.+.+..+|+
T Consensus 1583 a~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1583 ARELLKRALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHH
Confidence 77777776541 233 233334444456777888888888877765322 45568888888888888888888888
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHHHcCCHh
Q 014860 350 EMIEKQRPVDF--ITYRTVLDEICRRGRAG 377 (417)
Q Consensus 350 ~m~~~g~~p~~--~~~~~li~~~~~~g~~~ 377 (417)
+..+.++.|-. ..|...+..=-..|+-+
T Consensus 1659 Rvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1659 RVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 88877665543 24444444333445543
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.53 E-value=0.00052 Score=65.55 Aligned_cols=290 Identities=10% Similarity=0.140 Sum_probs=167.7
Q ss_pred hhHHHHHHhcCCCC---CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 014860 88 DTQFRCAVSELPPR---FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQML 164 (417)
Q Consensus 88 ~~~~~~~l~~~p~~---~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (417)
...|.++|..+|.. ..|...+.-....+-++.++++|+... +.++..-+--|..++..+++++|.+.+....
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 34567777777755 568888888888888889999998876 4566667888888888999998888777776
Q ss_pred cCCCCC-----C------------------------------------C--HHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 165 ATPSFC-----G------------------------------------T--EALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 165 ~~~~~~-----~------------------------------------~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
..+... . | ...|++|...|.+.|++++|..+|++...
T Consensus 197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 532110 1 1 24677777778888888888888877765
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcc--------------chhhhhHHHHHHHHHHHHHCC-----------CCCCHHH
Q 014860 202 SRNLECRPSIRSYNILFTAFLSRGKNT--------------YINHVYMETIRCLFKQMVNDG-----------IEPDIFS 256 (417)
Q Consensus 202 ~~~~g~~p~~~~~~~li~~~~~~g~~~--------------~~~~~~~~~a~~~~~~m~~~g-----------~~p~~~~ 256 (417)
. ..++.-|+.+.++|+.-.... .-....++-.+.-|+.+.+.+ -+.++.+
T Consensus 277 ~-----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e 351 (835)
T KOG2047|consen 277 T-----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE 351 (835)
T ss_pred h-----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence 4 334444555555554322100 000111333334444443321 0112222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHH
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLP------NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS---SKS 327 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~ 327 (417)
|..-+.. ..|+..+-..++.+..+ .+.| -...|..+...|-+.|+++.|..+|+...+-..+-- ..+
T Consensus 352 W~kRV~l--~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 352 WHKRVKL--YEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHhhhhh--hcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 2222221 13444555555555543 2222 234677778888888888888888887765433211 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCC------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEKQ-----------RPV------DFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
|..-...-.++.+++.|+++++.....- .++ +...|...++.--..|-++....+++++.+..
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 4444444455667777777766654321 011 23345555555555666777777777776655
Q ss_pred C
Q 014860 391 L 391 (417)
Q Consensus 391 ~ 391 (417)
+
T Consensus 508 i 508 (835)
T KOG2047|consen 508 I 508 (835)
T ss_pred c
Confidence 4
No 82
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=2.1e-05 Score=75.69 Aligned_cols=231 Identities=11% Similarity=0.078 Sum_probs=179.9
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 014860 106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE 185 (417)
Q Consensus 106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 185 (417)
.+.+.+...|-...|+.+|+.. +.|..+|..|...|+-.+|..+..+..+.+ ||...|..+.+....
T Consensus 403 ~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~---~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKD---PDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCC---CcchhHHHhhhhccC
Confidence 4566678889999999999765 456778889999999999999999888843 899999999999988
Q ss_pred hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860 186 ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI 265 (417)
Q Consensus 186 ~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 265 (417)
--.+++|.++++....+ --..++. ...++++ ++++.+.|+.-.+.+ +.-..+|-.+--+..
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~---~~~~~~~--------fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLAL---LILSNKD--------FSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhcc---ccccchh--------HHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 88899999999887653 0111121 2233677 999999998877654 456678888888888
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 345 (417)
+.++++.|.+.|..... +-+-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.
T Consensus 531 qlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 99999999999998865 334467789999999999999999999999999887 446667777788888999999999
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 014860 346 KNLWEMIEKQ-RPVDFITYRTVLDEIC 371 (417)
Q Consensus 346 ~~~~~m~~~g-~~p~~~~~~~li~~~~ 371 (417)
+.+..+.... ..-|...-..++....
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999887641 1124444444444433
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=0.00011 Score=64.32 Aligned_cols=185 Identities=10% Similarity=0.033 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
.....+-.+...+.+.|++++|...|+++... .|+ ..++..+..++...|+ +++|...++++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~--------~~~A~~~~~~~l 97 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGD--------YAEAIAAADRFI 97 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHH
Confidence 45677788888899999999999999998875 333 2467778888999999 999999999998
Q ss_pred HCCCCCCH--HHHHHHHHHHHhc--------CCHHHHHHHHHHhhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 247 NDGIEPDI--FSLNSMIKGYILS--------NHVNDALRIFHQMGVVYNYLPNS-FSYDYLIHGLCAQGRTKNARELCDE 315 (417)
Q Consensus 247 ~~g~~p~~--~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 315 (417)
+....... .++..+-.++... |+.++|.+.|+.+... .|+. ..+..+.... . ... .
T Consensus 98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~-~---~~~------~ 164 (235)
T TIGR03302 98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD-Y---LRN------R 164 (235)
T ss_pred HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH-H---HHH------H
Confidence 75421111 1344444444443 6788888888888663 2332 2222221110 0 000 0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 316 MKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ--RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 316 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
.. .....+...|.+.|+.++|...+++..+.. -+.....+..+..++...|+.++|..+++.+...
T Consensus 165 ~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 LA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 011245567888899999999998888762 2223567888888999999999999988887665
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.00011 Score=69.18 Aligned_cols=257 Identities=14% Similarity=0.099 Sum_probs=190.9
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860 109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK 188 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 188 (417)
..+.+.|+...|.-.|+...++. +-+.+.|..|...-..+++-..|+..+.+..+... .|....-+|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP--~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDP--TNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhh
Confidence 33467888999999999887766 66899999999999999999999999999998876 688888999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC----ccchhhhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK----NTYINHVYMETIRCLFKQMV-NDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~----~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~ 263 (417)
-.+|++.++.-.... |. |..+..+ ...++ .+...........++|-++. ..+..+|..+...|--.
T Consensus 369 q~~Al~~L~~Wi~~~-----p~---y~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNK-----PK---YVHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHHHHHHhC-----cc---chhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 999999999886641 11 0000000 00000 01122223677777777766 45545788888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVE 342 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 342 (417)
|--.|++++|...|+..... -+-|...||-|-..++...+.++|+.-|.+..+. .|+ +++...|--+|...|.++
T Consensus 440 y~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHH
Confidence 99999999999999988652 2347889999999999999999999999999874 666 345555667789999999
Q ss_pred HHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 014860 343 ETVKNLWEMIEK---------QRPVDFITYRTVLDEICRRGRAGEAMKL 382 (417)
Q Consensus 343 ~A~~~~~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~~ 382 (417)
+|.+.|-..+.. +..++...|.+|=.++.-.++.|-+.+.
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999988765542 1123445777777777777777655443
No 85
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=0.001 Score=60.67 Aligned_cols=134 Identities=9% Similarity=0.022 Sum_probs=61.2
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL 189 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 189 (417)
+...+..++|+.+...+.+.. +-+..+|+.--.++...| .++++++.++.+.+... .+..+|+.-.-.+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHHcCch
Confidence 344455555555555554322 223333333333344444 34555555555554433 3334444443334444432
Q ss_pred --HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860 190 --SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI 261 (417)
Q Consensus 190 --~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 261 (417)
++++.+++.+.+. -+-+..+|+...-.+...|+ ++++++.++++.+.+ .-|...|+...
T Consensus 123 ~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~--------~~eeL~~~~~~I~~d-~~N~sAW~~R~ 183 (320)
T PLN02789 123 AANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGG--------WEDELEYCHQLLEED-VRNNSAWNQRY 183 (320)
T ss_pred hhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHC-CCchhHHHHHH
Confidence 4445555555443 12344555555555555555 555555555555544 22334444433
No 86
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=0.00047 Score=62.82 Aligned_cols=241 Identities=9% Similarity=0.038 Sum_probs=172.9
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CHHHH
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR-KLSRA 192 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a 192 (417)
.+++.+|...|+.+. ...+..++|..+.+.+++..+ .+..+|+.--.++...| +++++
T Consensus 33 ~~~~~~a~~~~ra~l-------------------~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~ee 91 (320)
T PLN02789 33 TPEFREAMDYFRAVY-------------------ASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEE 91 (320)
T ss_pred CHHHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHH
Confidence 455666776666553 346788899999999988764 45567776666677777 68999
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND 272 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 272 (417)
+..++++.+. -+-+..+|+.--..+.+.|+. ..++++.+++.+.+.. +-+-.+|+-..-++...|++++
T Consensus 92 L~~~~~~i~~----npknyqaW~~R~~~l~~l~~~------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 92 LDFAEDVAED----NPKNYQIWHHRRWLAEKLGPD------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHHH----CCcchHHhHHHHHHHHHcCch------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHH
Confidence 9999999875 244566788766666666651 0367888998888775 4578899988888889999999
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCH
Q 014860 273 ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ---GRT----KNARELCDEMKRKGFVPSSKSYNSLVSALALN----GEV 341 (417)
Q Consensus 273 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~----g~~ 341 (417)
+++.++++.+ .+ ..|...|+.....+.+. |.. ++..+....+..... -|...|+-+...+... +..
T Consensus 161 eL~~~~~~I~-~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 161 ELEYCHQLLE-ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHH-HC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccc
Confidence 9999999987 33 35666777766665554 323 467777767776543 3678888888888773 345
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------------------CHhHHHHHHHHHHHCC
Q 014860 342 EETVKNLWEMIEKQRPVDFITYRTVLDEICRRG------------------RAGEAMKLLKELQNKN 390 (417)
Q Consensus 342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------------~~~~A~~~~~~m~~~~ 390 (417)
.+|.+.+.+....+ ..+......|++.|+... ..++|.++++.|.+.+
T Consensus 238 ~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 238 PEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred hhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence 66888888876643 346678888999998643 3478999999995443
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=0.00019 Score=72.98 Aligned_cols=82 Identities=7% Similarity=0.126 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
..+-.+..+|-+.|+ .+++.++|+++.+.. +-|..+.|.+-..|... ++++|++++.+....
T Consensus 117 ~Al~~LA~~Ydk~g~--------~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 117 LALRTLAEAYAKLNE--------NKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred HHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 466667777777788 888888888888776 55677788888888877 888888887777552
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
+...+++..+.++|.++...
T Consensus 179 --------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 --------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred --------HHhhhcchHHHHHHHHHHhc
Confidence 44444555555555555543
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=0.0001 Score=62.85 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=68.6
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR 224 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~ 224 (417)
..+...|+-+....+......... .|....+..+....+.|++..|+..|++...- -++|...|+.+--+|.+.
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----CCCChhhhhHHHHHHHHc
Confidence 344444444444444444332222 33334444444455555555555555555442 244445555555555555
Q ss_pred CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860 225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG 304 (417)
Q Consensus 225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 304 (417)
|+ .++|..-|.+..+.. .-+...+|.+.-.|.-.|+.+.|..++..... .-..|...-..+.......|
T Consensus 148 Gr--------~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 148 GR--------FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQG 216 (257)
T ss_pred cC--------hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcC
Confidence 55 455554444444432 12233344444444444555555555544433 11124444444444455555
Q ss_pred CHHHHHHHHH
Q 014860 305 RTKNARELCD 314 (417)
Q Consensus 305 ~~~~A~~l~~ 314 (417)
++++|+++..
T Consensus 217 ~~~~A~~i~~ 226 (257)
T COG5010 217 DFREAEDIAV 226 (257)
T ss_pred ChHHHHhhcc
Confidence 5555554443
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=8.4e-05 Score=65.09 Aligned_cols=198 Identities=9% Similarity=0.017 Sum_probs=129.4
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-H
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-I 211 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~ 211 (417)
......+-.....+...|++++|...++.+.......+. ...+..+..+|.+.|++++|...|+++.+.. .-.+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 346677777888889999999999999999876542121 2467788899999999999999999998752 00111 1
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS 290 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 290 (417)
.++..+-.++..............++|.+.|+.+.+.. |+. ..+.++.... . . ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~------~~~~~~-------- 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---L------RNRLAG-------- 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---H------HHHHHH--------
Confidence 23444445554431000001112899999999998763 443 2332221110 0 0 000111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGF--VPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
....+...|.+.|++++|...+++..+... +.....+..+..++.+.|+.++|..+++.+...
T Consensus 168 -~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 -KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112455678899999999999999887521 223578889999999999999999998888764
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00033 Score=60.76 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=175.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH-HHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT-IIYF 182 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~-li~~ 182 (417)
++.++..+.+..++..|++++..-.++. +.+......+..+|-...++..|-+.++++-... |...-|.. -...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 5667777788889999999998775543 3477888888888999999999999999987754 44444432 2356
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH--hcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL--SRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~--~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
+.+++.+.+|+++...|... ++...-..-+.+-. ..++ +-.+..+.++....| +..+.+..
T Consensus 88 LY~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~D--------l~g~rsLveQlp~en---~Ad~~in~ 150 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGD--------LPGSRSLVEQLPSEN---EADGQINL 150 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccccc--------CcchHHHHHhccCCC---ccchhccc
Confidence 66889999999999988763 33333223333332 3444 566666666655322 23333333
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHHH
Q 014860 261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV-------------PSSKS 327 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------------p~~~~ 327 (417)
--...+.|+++.|.+-|+...+..|..|- ..||..+..| +.|++..|++...++.+.|++ ||+..
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs 228 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS 228 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence 33345788999999999888876677654 4677665444 557888899988888887755 23221
Q ss_pred ---------------HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 328 ---------------YNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 328 ---------------~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
+|.-...+.+.|+.+.|.+-+-.|.-+ .-..|++|.+.+.-.- ..|++.+..+-+.-+...+.
T Consensus 229 vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 229 VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC
Confidence 222223345667777777777766543 2334666665442221 12334444444455555443
Q ss_pred CChhhHHHHHHHHHhh
Q 014860 392 IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 392 p~~~t~~~ll~~~~~~ 407 (417)
-+..||..++-.||+.
T Consensus 308 fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKN 323 (459)
T ss_pred CChHHHHHHHHHHhhh
Confidence 3566777666666654
No 91
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00041 Score=59.29 Aligned_cols=252 Identities=12% Similarity=0.077 Sum_probs=157.8
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
++-+--.|++..++..-...... +-+...-..+-++|...|.+..... ..+... . +....+..+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~-~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-A-TPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-C-ChHHHHHHHHHHhhCcc
Confidence 34445567787777766554322 2455555566677777777654322 222221 1 33333333333333345
Q ss_pred CHHHHH-HHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 188 KLSRAV-YVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL 266 (417)
Q Consensus 188 ~~~~a~-~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 266 (417)
+.++.+ ++.+.+... ....+...-..-...|+..|+ .++|++...... +......=+..+.+
T Consensus 87 ~~~~~~~~l~E~~a~~---~~~sn~i~~l~aa~i~~~~~~--------~deAl~~~~~~~------~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 87 NKKSILASLYELVADS---TDGSNLIDLLLAAIIYMHDGD--------FDEALKALHLGE------NLEAAALNVQILLK 149 (299)
T ss_pred hhHHHHHHHHHHHHhh---ccchhHHHHHHhhHHhhcCCC--------hHHHHHHHhccc------hHHHHHHHHHHHHH
Confidence 544433 344444443 223333333444556788888 899988876521 23333333455677
Q ss_pred cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
..+++.|.+.++.|.+- .+..|.+-|..+|.+ .+++.+|.-+|++|-++ ..|+..+.|-...++...|+++
T Consensus 150 ~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence 88899999999999872 566677777777664 35688999999999764 6788899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHCC
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA-GEAMKLLKELQNKN 390 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~ 390 (417)
+|..++++...+. .-+..|...+|..-...|.. +-..+.+..++...
T Consensus 225 eAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 225 EAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 9999999988872 23455665555555555544 44556777776655
No 92
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.1e-06 Score=51.29 Aligned_cols=33 Identities=45% Similarity=0.839 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 324 (417)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 93
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.3e-06 Score=50.95 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVD 359 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 359 (417)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 94
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=0.003 Score=58.44 Aligned_cols=297 Identities=10% Similarity=0.015 Sum_probs=167.2
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860 91 FRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 91 ~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (417)
+.+++..+|..- .|-.-+..=-.-|+...|.++|..-. . ..|+...|.+.|+.=.+-+.++.|..+++...-..
T Consensus 130 ~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~-~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-- 204 (677)
T KOG1915|consen 130 WDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM-E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-- 204 (677)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH-c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--
Confidence 556666666542 22222222234567777777776443 2 25777777777777777777777777777765533
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--------------------------------C-CCCCC--HHHH
Q 014860 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--------------------------------L-ECRPS--IRSY 214 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------------------------~-g~~p~--~~~~ 214 (417)
|++..|--..+.=-++|.+..|..+|+...+.-. + .++-+ ...|
T Consensus 205 -P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~ 283 (677)
T KOG1915|consen 205 -PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELY 283 (677)
T ss_pred -ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 6666666666666666666666666665554300 0 01111 1223
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH--H
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF--S 292 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~ 292 (417)
.....-=-+-|+...++.....+-.--|+.+.+.+ +.|-.+|--.+..--..|+.+...++|+.... +++|-.. -
T Consensus 284 k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~ 360 (677)
T KOG1915|consen 284 KKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRY 360 (677)
T ss_pred HHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHH
Confidence 23322223344433333222233233344454443 45667777778777788999999999998875 5655321 1
Q ss_pred HHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCH
Q 014860 293 YDYLIHG--------LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA----LNGEVEETVKNLWEMIEKQRPVDF 360 (417)
Q Consensus 293 ~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~ 360 (417)
|.--|.. =....+.+.+.++++...+. ++....||.-+--.|+ ++.++..|.+++...+ |.-|-.
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~ 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCch
Confidence 2222211 12456777777888777662 3333445544433333 4566666766666544 445666
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHH
Q 014860 361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTK 399 (417)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ 399 (417)
.+|...|..=.+.++++.+..++++.+.-+.-+-.+|..
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 667666666666677777777777766665434444443
No 95
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.6e-06 Score=50.34 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPV 358 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 358 (417)
+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 96
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0021 Score=55.07 Aligned_cols=137 Identities=13% Similarity=0.191 Sum_probs=68.9
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS 259 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 259 (417)
...|++.|++++|++...... +......=+..+.+..+ .+-|.+.+++|.+. -+..|.+-
T Consensus 115 a~i~~~~~~~deAl~~~~~~~---------~lE~~Al~VqI~lk~~r--------~d~A~~~lk~mq~i---ded~tLtQ 174 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE---------NLEAAALNVQILLKMHR--------FDLAEKELKKMQQI---DEDATLTQ 174 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc---------hHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcc---chHHHHHH
Confidence 344555666666666555521 22333333333444444 55666666666543 23444444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 260 MIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL 335 (417)
Q Consensus 260 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 335 (417)
|..+|.+ .+.+.+|.-+|++|.+ ...|+..+.+-...++...|++++|+.++++...+..+ +..+...+|.+-
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a 251 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHH
Confidence 4444443 3345566666666653 34455566666666666666666666666666555333 344444444333
Q ss_pred HhcC
Q 014860 336 ALNG 339 (417)
Q Consensus 336 ~~~g 339 (417)
...|
T Consensus 252 ~~~G 255 (299)
T KOG3081|consen 252 LHLG 255 (299)
T ss_pred HHhC
Confidence 3333
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.25 E-value=0.0018 Score=68.70 Aligned_cols=272 Identities=11% Similarity=0.020 Sum_probs=176.5
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHcCCCC----CCCHHHHHHHHHH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDA----STYHIMTRKLGAAKMYQEMDDVVNQMLATPSF----CGTEALYNTIIYF 182 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~~li~~ 182 (417)
+...|+++.|...++....... ..+. ...+.+...+...|++++|...+.+....... .........+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 4578999999999998754221 1121 23455556677899999999998888753211 0122355566778
Q ss_pred HHHhCCHHHHHHHHHHhHhCCC-CCCC--C-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC--CCCC--CH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRN-LECR--P-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND--GIEP--DI 254 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~-~g~~--p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~ 254 (417)
+...|++++|...+++...... .+.. + ....+..+...+...|+ +++|...+++.... ...+ ..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~--------~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR--------LDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHhHHhhhccCchHHH
Confidence 8899999999999887655310 0111 1 23345556666777899 99999998887642 1112 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY-----DYLIHGLCAQGRTKNARELCDEMKRKGFVPS---SK 326 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ 326 (417)
..+..+...+...|+.+.|.+.++.......-......+ ...+..+...|+.+.|..++........... ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 344445667788999999999998875421111111111 1123445668999999999877654321111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
.+..+..++...|+.++|...+++.... |..++. .+...+..++.+.|+.++|...+.+..+..-
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 2456677888999999999999987764 333322 3556666788899999999999999887643
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.25 E-value=4.6e-05 Score=61.01 Aligned_cols=111 Identities=9% Similarity=-0.046 Sum_probs=95.9
Q ss_pred CChhHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 86 LDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 86 ~~~~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
.-+..+.+.+..-|+. +......+...|++++|+..|+.+.... +.+...|..+..++...|++++|...++...+
T Consensus 11 ~~~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 11 IPEDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred CHHHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456677777777764 5556777889999999999999997655 66899999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
... .+...+..+..++.+.|++++|+..|+...+.
T Consensus 87 l~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LDA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 765 68899999999999999999999999999875
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=0.00064 Score=68.33 Aligned_cols=235 Identities=10% Similarity=0.034 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHccCChhHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEM-DDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY 214 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~ 214 (417)
++.....+=.+++..|.-++| .+++.+..+ ++...++.....+++.-...... .+..+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 89 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVR----RYPHTELFQ 89 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHH----hccccHHHH
Confidence 333344444456666666665 455555543 23333333333344433333333 245568899
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (417)
-.|.....+.|. .++|+.+++...+. .|| ......+...+.+.+++++|+..+++... .-+-+....
T Consensus 90 ~~La~i~~~~g~--------~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 90 VLVARALEAAHR--------SDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred HHHHHHHHHcCC--------cHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 999999999999 99999999999987 455 55667788899999999999999999875 223456667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
..+-.++...|++++|.++|++....+ .-+..++..+-.++-..|+.++|...|+...+. ..+-...|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------
Confidence 777888999999999999999999843 235788999999999999999999999999876 334445555443
Q ss_pred CCHhHHHHHHHHHHHCCCC-----ChhhHHHHHHHHHhh
Q 014860 374 GRAGEAMKLLKELQNKNLI-----DGYTYTKLLDVLEDD 407 (417)
Q Consensus 374 g~~~~A~~~~~~m~~~~~p-----~~~t~~~ll~~~~~~ 407 (417)
++...-..+++++.-.+.+ ........|.-+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3445556677777666552 333444455444433
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00075 Score=57.62 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=77.9
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS 190 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 190 (417)
+...|+.+..+.+........ +.|....+..+....+.|++.+|...+.+...... +|..+|+.+.-+|.+.|+.+
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p--~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP--TDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC--CChhhhhHHHHHHHHccChh
Confidence 334444444444444332111 33444444555555555555555555555554433 55555555555555555555
Q ss_pred HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHV 270 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 270 (417)
.|..-|.+..+- ..-+....|.|.-.+.-.|+ .+.|..++......+ .-|..+-..+.......|++
T Consensus 152 ~Ar~ay~qAl~L----~~~~p~~~nNlgms~~L~gd--------~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 152 EARRAYRQALEL----APNEPSIANNLGMSLLLRGD--------LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHHHHHh----ccCCchhhhhHHHHHHHcCC--------HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 555555555543 12233445555555555555 555555555555443 22444445555555555555
Q ss_pred HHHHHHHHHh
Q 014860 271 NDALRIFHQM 280 (417)
Q Consensus 271 ~~a~~~~~~m 280 (417)
+.|+++...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 5555555443
No 101
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.23 E-value=2e-06 Score=49.89 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP 323 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 323 (417)
.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00095 Score=59.34 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=39.0
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
...+-+-|++++|+..|..+.... .++.+.+..+.-...-.|.+.+|.++-....+
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK 119 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 334467899999999999886544 56667666666666667777777776555443
No 103
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.0047 Score=57.20 Aligned_cols=259 Identities=11% Similarity=0.056 Sum_probs=189.5
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
.+++...|..+|+.+.... .-+...|-.-+.+=.++..+..|..+++..+..-+. . ...|-..+.+=-..|++..|
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-V-dqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-V-DQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-H-HHHHHHHHHHHHHhcccHHH
Confidence 4667888999999886433 456666777777778999999999999999886543 2 35666777777788999999
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND 272 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 272 (417)
.++|+.-.+. .|+...|++.|.-=.+-.. ++.|..+|+...-. .|++.+|--...-=-++|....
T Consensus 161 RqiferW~~w-----~P~eqaW~sfI~fElRyke--------ieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 161 RQIFERWMEW-----EPDEQAWLSFIKFELRYKE--------IERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHHHcC-----CCcHHHHHHHHHHHHHhhH--------HHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 9999999875 8999999999999999999 99999999998865 5999999888888889999999
Q ss_pred HHHHHHHhhhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH---HHHH
Q 014860 273 ALRIFHQMGVVYNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVE---ETVK 346 (417)
Q Consensus 273 a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~---~A~~ 346 (417)
|..+|....+..|-. -+...|.+...-=.++..++.|.-+|+-..+. ++-+ ...|..+..---+-|+.. ++.-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999887633221 22334444444445667788888888877765 3323 344555544444445533 3322
Q ss_pred -----HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860 347 -----NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 347 -----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 392 (417)
-++.+.+. -+.|-.+|--.++.-...|+.+...++|++.+..-.|
T Consensus 305 ~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 305 GKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred hhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 12333333 2456667777777778889999999999998876444
No 104
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.21 E-value=5.7e-05 Score=55.69 Aligned_cols=89 Identities=11% Similarity=0.171 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCC-CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLEC-RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
+-...|.-+...+++...-.+|+.+++. |+ .|++.+|+.++.+.++..-.+..-...+-.++.+|++|...+++|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN---~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~ 103 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN---GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPN 103 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCc
Confidence 4445666677779999999999999998 89 9999999999999998775433222236788899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 014860 254 IFSLNSMIKGYIL 266 (417)
Q Consensus 254 ~~~~~~li~~~~~ 266 (417)
..||+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.20 E-value=0.00094 Score=56.56 Aligned_cols=164 Identities=11% Similarity=0.099 Sum_probs=116.0
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL 296 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 296 (417)
-+..|...|+ ++.+....+.+.. |. . .+...++.+++...++...+ .-+.|...|..+
T Consensus 22 ~~~~Y~~~g~--------~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~L 79 (198)
T PRK10370 22 CVGSYLLSPK--------WQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALL 79 (198)
T ss_pred HHHHHHHcch--------HHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHH
Confidence 4456788888 7666444332221 11 0 12225566677766666554 224678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 297 IHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL-ALNGE--VEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.. +-+...+..+...+.+.
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHc
Confidence 99999999999999999998876433 677777777764 67677 589999999998862 33667788888889999
Q ss_pred CCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 374 GRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 374 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
|++++|...++++.+...|+..-+..+ ++..
T Consensus 158 g~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~ 188 (198)
T PRK10370 158 ADYAQAIELWQKVLDLNSPRVNRTQLV-ESIN 188 (198)
T ss_pred CCHHHHHHHHHHHHhhCCCCccHHHHH-HHHH
Confidence 999999999999998877755444433 6544
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00023 Score=67.03 Aligned_cols=221 Identities=13% Similarity=0.051 Sum_probs=170.5
Q ss_pred HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcC
Q 014860 147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRG 225 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g 225 (417)
+.+.|++.+|.-.|+..++..+ .+...|..|.......++-..|+..+++..+- .| +....-.|.-.|...|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-----dP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLEL-----DPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhh
Confidence 4588889999999999988875 67889999999999999999999999998875 44 4666777888888888
Q ss_pred CccchhhhhHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860 226 KNTYINHVYMETIRCLFKQMVNDGIE--------PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI 297 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 297 (417)
. -..|+++++.-.....+ ++...-+. ..+.....+....++|-++....+..+|...+..|-
T Consensus 368 ~--------q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 L--------QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred h--------HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 7 78888888776543211 00000000 223333445667777777766567667888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCH
Q 014860 298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRA 376 (417)
Q Consensus 298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 376 (417)
-.|--.|++++|.+.|+........ |..+||-|-..++...+.++|+..|.+.++. +|+- .....|.-.|...|.+
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhH
Confidence 8899999999999999999886433 6889999999999999999999999999875 5654 3556677789999999
Q ss_pred hHHHHHHHHHH
Q 014860 377 GEAMKLLKELQ 387 (417)
Q Consensus 377 ~~A~~~~~~m~ 387 (417)
++|.+.|-+.+
T Consensus 515 kEA~~hlL~AL 525 (579)
T KOG1125|consen 515 KEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.18 E-value=0.00014 Score=61.62 Aligned_cols=128 Identities=9% Similarity=0.114 Sum_probs=105.6
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHhCC--HH
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF-FAEARK--LS 190 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~--~~ 190 (417)
.++.++++..++...+.. +.|...|..+...+...|++++|...++...+..+ .+...+..+..+ +...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcH
Confidence 456677887787776555 67899999999999999999999999999999875 678888888886 467777 59
Q ss_pred HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
+|.+++++..+.. +-+..++..+...+...|+ +++|+..|+++.+.. +|+..-+.
T Consensus 128 ~A~~~l~~al~~d----P~~~~al~~LA~~~~~~g~--------~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 128 QTREMIDKALALD----ANEVTALMLLASDAFMQAD--------YAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHHhC----CCChhHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCccHHH
Confidence 9999999999862 4467889999999999999 999999999998875 45554443
No 108
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00036 Score=61.91 Aligned_cols=222 Identities=11% Similarity=0.056 Sum_probs=124.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-----HHhCCHH
Q 014860 116 DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF-----AEARKLS 190 (417)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~-----~~~g~~~ 190 (417)
+-+.|++++--+. +.-+++-..++-.+.+.+++++|..+..++. +..|-....-.++.+- .....+.
T Consensus 269 ngEgALqVLP~L~-----~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 269 NGEGALQVLPSLM-----KHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CCccHHHhchHHH-----hhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 3445555554443 1223344445556677888888777765542 2113333322222211 1112255
Q ss_pred HHHHHHHHhHhCCCCCCCCCHH-HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 191 RAVYVFKYMKNSRNLECRPSIR-SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH 269 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 269 (417)
-|.+.|+-.-+. +..-|+. .-..+.+.+.-..+ .|+++-.++..+.-=..-|..-+| +..+++..|.
T Consensus 341 iAqqffqlVG~S---a~ecDTIpGRQsmAs~fFL~~q--------FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgn 408 (557)
T KOG3785|consen 341 IAQQFFQLVGES---ALECDTIPGRQSMASYFFLSFQ--------FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGN 408 (557)
T ss_pred HHHHHHHHhccc---ccccccccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcC
Confidence 566666655544 4443332 23345555555555 777777777666543333444443 6677888888
Q ss_pred HHHHHHHHHHhhhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 014860 270 VNDALRIFHQMGVVYNYLPNSFSYD-YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS-YNSLVSALALNGEVEETVKN 347 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~ 347 (417)
+.+|+++|-.+.. ..+ .|..+|. .|..+|.++++++.|++++-.+...+ +..+ ...+..-|.+++++--|-+.
T Consensus 409 y~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 409 YVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred hHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888877754 233 3444554 45567788888888887776655322 2222 23344667778888777777
Q ss_pred HHHHHHcCCCCCHHHHH
Q 014860 348 LWEMIEKQRPVDFITYR 364 (417)
Q Consensus 348 ~~~m~~~g~~p~~~~~~ 364 (417)
|+++... .|++..|.
T Consensus 484 Fd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 484 FDELEIL--DPTPENWE 498 (557)
T ss_pred hhHHHcc--CCCccccC
Confidence 8777654 56666663
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00063 Score=68.37 Aligned_cols=161 Identities=9% Similarity=-0.014 Sum_probs=123.3
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 014860 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVF 196 (417)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 196 (417)
+..++.-.....++ +..+...+-.|..+..+.|.+++|..+++...+..+ .+......+...+.+.+++++|+..+
T Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P--d~~~a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 68 PAAALPELLDYVRR--YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP--DSSEAFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred hHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44444433333333 366788899999999999999999999999988764 56778888889999999999999999
Q ss_pred HHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860 197 KYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRI 276 (417)
Q Consensus 197 ~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 276 (417)
++.... -+-+....+.+-.++.+.|+ +++|.++|++....+ +-+..++..+-.++...|+.++|...
T Consensus 144 ~~~l~~----~p~~~~~~~~~a~~l~~~g~--------~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 144 ELYFSG----GSSSAREILLEAKSWDEIGQ--------SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred HHHhhc----CCCCHHHHHHHHHHHHHhcc--------hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999875 23456667788888899999 999999999998743 34478888888889999999999999
Q ss_pred HHHhhhhCCCCCCHHHHHHH
Q 014860 277 FHQMGVVYNYLPNSFSYDYL 296 (417)
Q Consensus 277 ~~~m~~~~~~~~~~~~~~~l 296 (417)
|+...+.. .+....|+..
T Consensus 211 ~~~a~~~~--~~~~~~~~~~ 228 (694)
T PRK15179 211 LQAGLDAI--GDGARKLTRR 228 (694)
T ss_pred HHHHHHhh--CcchHHHHHH
Confidence 99886522 2444554443
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0048 Score=58.66 Aligned_cols=283 Identities=15% Similarity=0.124 Sum_probs=164.2
Q ss_pred HHHHh--ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC---------------
Q 014860 108 CNVMT--LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC--------------- 170 (417)
Q Consensus 108 l~~l~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--------------- 170 (417)
-.+|| +.+..++|+..++-.. +.|..+...-...+-+.|++++|.++|+.+.+.+...
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 44554 5566777777776331 2344455555566667777777777777775533210
Q ss_pred -----------CCHHHHHHH---HHHHHHhCCHHHHHHHHHHhHhC-------CCC---CCCCCHHH-HHHHHHHHHhcC
Q 014860 171 -----------GTEALYNTI---IYFFAEARKLSRAVYVFKYMKNS-------RNL---ECRPSIRS-YNILFTAFLSRG 225 (417)
Q Consensus 171 -----------~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~-------~~~---g~~p~~~~-~~~li~~~~~~g 225 (417)
....+|..+ ...+...|++.+|+++++...+. ++. ++.-+..+ ---|.-.+-..|
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 011233333 34566789999999999988221 000 11111111 122445567788
Q ss_pred CccchhhhhHHHHHHHHHHHHHCCCCCCHHHH------------------------------------------------
Q 014860 226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSL------------------------------------------------ 257 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~------------------------------------------------ 257 (417)
+ .++|.+++....+.. .+|....
T Consensus 239 q--------t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 239 Q--------TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred c--------hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8 888988888888765 3333211
Q ss_pred ---HHHHHHHHh--------------------------------cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh
Q 014860 258 ---NSMIKGYIL--------------------------------SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA 302 (417)
Q Consensus 258 ---~~li~~~~~--------------------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 302 (417)
+.++..|.. ...+..+.+++....+ ..-......--.++.....
T Consensus 310 ~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 310 YRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-GHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-cCCchhHHHHHHHHHHHHh
Confidence 111111111 0112333333333332 1111123344556666778
Q ss_pred cCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH----H
Q 014860 303 QGRTKNARELCD--------EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRTVL----D 368 (417)
Q Consensus 303 ~g~~~~A~~l~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li----~ 368 (417)
.|+++.|.+++. .+.+.+..| .+..+++..+.+.++.+.|..++++.... .-.+......+++ .
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 899999998888 444444444 45566777777888777777777766553 1112222333333 3
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 369 EICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
--.+.|+.++|..+++++.+.+.+|..+...++.+|+..
T Consensus 467 f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 335779999999999999998888999999999999865
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.14 E-value=0.00041 Score=55.48 Aligned_cols=93 Identities=9% Similarity=-0.129 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+. .+.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555544432 124444555555555555555555555555543 12234444455555555555
Q ss_pred HhHHHHHHHHHHHCC
Q 014860 376 AGEAMKLLKELQNKN 390 (417)
Q Consensus 376 ~~~A~~~~~~m~~~~ 390 (417)
.++|...|+......
T Consensus 108 ~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 108 PGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555555554443
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00065 Score=58.99 Aligned_cols=238 Identities=11% Similarity=0.143 Sum_probs=170.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH-H
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI-L 217 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~-l 217 (417)
-+..++..+.+..+++.|.+++..-.+... .+....+.|..+|....++..|-..|+++... -|...-|.. -
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-----~P~~~qYrlY~ 84 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-----HPELEQYRLYQ 84 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ChHHHHHHHHH
Confidence 356677777888899999999888777654 47788889999999999999999999999875 566665554 2
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY--ILSNHVNDALRIFHQMGVVYNYLPNSFSYDY 295 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 295 (417)
...+-+.+. +..|+.+...|.+. ++...-..-+.+. ...+++-.+..++++... ..+..+.+.
T Consensus 85 AQSLY~A~i--------~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in 149 (459)
T KOG4340|consen 85 AQSLYKACI--------YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQIN 149 (459)
T ss_pred HHHHHHhcc--------cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhcc
Confidence 345666777 88899998888753 2322222222222 346788888888888763 134444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP-------------VDFI 361 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~~ 361 (417)
.-....+.|+++.|.+-|....+- |.. ....||..+.-| +.|+.+.|+++..+++++|++ ||+.
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr 227 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR 227 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence 444567899999999999988775 555 455788766555 568999999999999988764 2221
Q ss_pred --------HHHHHHHH-------HHHcCCHhHHHHHHHHHHHCCC--CChhhHHHH
Q 014860 362 --------TYRTVLDE-------ICRRGRAGEAMKLLKELQNKNL--IDGYTYTKL 400 (417)
Q Consensus 362 --------~~~~li~~-------~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~l 400 (417)
.-+.++.+ +.+.|+.+.|.+-+.+|.-+.- .|+.|...+
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 23445554 3578999999999999987765 477777654
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.12 E-value=0.00026 Score=68.43 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=105.9
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK 262 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 262 (417)
...++.|.+|+.+++.+... +.-..-|..+...|...|+ ++.|+++|-+. ..++--|.
T Consensus 742 ai~akew~kai~ildniqdq-----k~~s~yy~~iadhyan~~d--------fe~ae~lf~e~---------~~~~dai~ 799 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQ-----KTASGYYGEIADHYANKGD--------FEIAEELFTEA---------DLFKDAID 799 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhh-----ccccccchHHHHHhccchh--------HHHHHHHHHhc---------chhHHHHH
Confidence 34455666777777777665 2233446677778888888 88888887542 24566788
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
+|.+.|+|++|.++-.+.. |-......|-+-..-+-..|++.+|++++-.+.. |+. .|.+|-+.|..+
T Consensus 800 my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcch
Confidence 8888888888888877764 3345566666666667777888888777654432 332 356677777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
+.+++.++-.-. --..|-..+..-|...|+.+.|.+-|-+.
T Consensus 868 dmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 868 DMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 776665543221 11224445555666677777766655443
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.12 E-value=0.0066 Score=58.36 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=187.2
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860 91 FRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 91 ~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (417)
+...|+..|... +.....-.+..-|+-++|.+..+...+.. .-+...|+.+.-.+-...++++|.+.+....+.+.
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~- 106 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK- 106 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-
Confidence 445555555443 33322333467789999999998876433 56778888888888889999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
.|...+.-+--.-++.|+++.....-.+..+. .+.....|.....+..-.|+ ...|..+.++..+..
T Consensus 107 -dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~~ra~w~~~Avs~~L~g~--------y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 107 -DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPSQRASWIGFAVAQHLLGE--------YKMALEILEEFEKTQ 173 (700)
T ss_pred -CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhh
Confidence 68888988888888999998888877777764 13346679999999999999 999999999998755
Q ss_pred C-CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860 250 I-EPDIFSLNSMI------KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 250 ~-~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
. .|+...+.-.. ....+.|..+.|.+.+..-+. .+.-....-..-...+.+.+++++|..++..+... .
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 2 56666664332 234567888888888877654 22222223334556678899999999999999987 4
Q ss_pred CCHHHHHH-HHHHHHhcCCHHHHH-HHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860 323 PSSKSYNS-LVSALALNGEVEETV-KNLWEMIEK---QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 323 p~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 392 (417)
||-.-|.- +..++.+-.+.-+++ .+|....+. .-.|-....+.+ . ...-.+..-+++..+.++|+|
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHHHHHHHhhcCCC
Confidence 66555544 455554344444444 666665554 111111111111 1 122334455677778888875
No 115
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.11 E-value=0.0073 Score=58.07 Aligned_cols=277 Identities=9% Similarity=0.046 Sum_probs=184.7
Q ss_pred CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860 101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180 (417)
Q Consensus 101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 180 (417)
+..|-.-++.+..+++...-...|+.......+.-....|...+......+..+-+..+++..++. ++..-+--|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHH
Confidence 446767778888889998889999888777766777788888999999999999999999999885 445578889
Q ss_pred HHHHHhCCHHHHHHHHHHhHhCCC---CCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC--HH
Q 014860 181 YFFAEARKLSRAVYVFKYMKNSRN---LECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD--IF 255 (417)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~m~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ 255 (417)
..+++.+++++|.+.+........ ..-+.+...|+-+....++..+... --.+.++++.+... -+| ..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~-----slnvdaiiR~gi~r--ftDq~g~ 249 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ-----SLNVDAIIRGGIRR--FTDQLGF 249 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc-----ccCHHHHHHhhccc--CcHHHHH
Confidence 999999999999999988765421 0124566778888877777665111 12233445555433 244 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR----------------------TKNARELC 313 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A~~l~ 313 (417)
.|.+|.+-|.+.|.++.|..+|++.... ..+..-|+.+.++|+.-.. ++-.+.-|
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 7899999999999999999999887652 2444455666666554211 11222223
Q ss_pred HHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCH
Q 014860 314 DEMKRKG-----------FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV------DFITYRTVLDEICRRGRA 376 (417)
Q Consensus 314 ~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~ 376 (417)
+.+...+ -.-++..|..-+. +..|+..+-...+.+.... +.| -...|..+.+-|-+.|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3322221 0112333333222 2245666667777777664 222 123577777888889999
Q ss_pred hHHHHHHHHHHHCCCCChh
Q 014860 377 GEAMKLLKELQNKNLIDGY 395 (417)
Q Consensus 377 ~~A~~~~~~m~~~~~p~~~ 395 (417)
+.|..+|++-.+..++...
T Consensus 404 ~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVE 422 (835)
T ss_pred HHHHHHHHHhhcCCccchH
Confidence 9999999888887765443
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.0062 Score=60.63 Aligned_cols=223 Identities=14% Similarity=0.061 Sum_probs=127.2
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRK--LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS 190 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 190 (417)
..+++..|+.....+.++.+-.+ |..++.+ +.+.|+.++|..+++.....+. .|..|...+-.+|.+.++.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhh
Confidence 35667777777777766553222 3333333 3477777777777766655544 47777777777777788888
Q ss_pred HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 014860 191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN-- 268 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-- 268 (417)
+|..+|++.... .|+..-...+..+|++.++ +.+-.+.--+|-+ .++-+.+.+=++++.+...-
T Consensus 95 ~~~~~Ye~~~~~-----~P~eell~~lFmayvR~~~--------yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 95 EAVHLYERANQK-----YPSEELLYHLFMAYVREKS--------YKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHHHHHhh-----CCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccC
Confidence 888888777754 5666666677777777766 4433333333322 22334445545555544321
Q ss_pred --------CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 269 --------HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD-EMKRKGFVPSSKSYNSLVSALALNG 339 (417)
Q Consensus 269 --------~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~~~~~li~~~~~~g 339 (417)
-...|.+.++.+.++.|-.-+..-.-.-...+-..|++++|++++. ...+.-..-+...-+.-+..+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 1234556666665533311222222222333455667777777773 3333323334444455666667777
Q ss_pred CHHHHHHHHHHHHHcC
Q 014860 340 EVEETVKNLWEMIEKQ 355 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g 355 (417)
++.+..++-.++..+|
T Consensus 241 ~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKG 256 (932)
T ss_pred ChHHHHHHHHHHHHhC
Confidence 7777777777777664
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.09 E-value=0.0036 Score=60.06 Aligned_cols=256 Identities=15% Similarity=0.108 Sum_probs=188.0
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
..+++..-+.+.+.+.+ +++-..++.....-.+...|+-++|.+......+.+. .+.+.|..+.-.+-...++++|
T Consensus 19 E~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHH
Confidence 45678888888888876 3456677777776677889999999999999988765 6788999998888889999999
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND 272 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 272 (417)
++.|....... +.|...|.-+--.=++.|+ ++.......++.+.. +-....|..+..++.-.|+...
T Consensus 95 iKcy~nAl~~~----~dN~qilrDlslLQ~QmRd--------~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 95 IKCYRNALKIE----KDNLQILRDLSLLQIQMRD--------YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHHHHHHhcC----CCcHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999998762 4567778877777778888 888888888877653 3345677888888889999999
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860 273 ALRIFHQMGVVYNYLPNSFSYDYLIHG------LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK 346 (417)
Q Consensus 273 a~~~~~~m~~~~~~~~~~~~~~~li~~------~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 346 (417)
|..+++...+.....|+...|...... ....|..++|.+.+..-+.. +.-....-..-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999998855456777766544333 45677888888877665543 22122233445567788999999999
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHhHHH-HHHHHHHH
Q 014860 347 NLWEMIEKQRPVDFITYR-TVLDEICRRGRAGEAM-KLLKELQN 388 (417)
Q Consensus 347 ~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~ 388 (417)
++..+... -||..-|. .+..++.+..+.-++. .+|....+
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 99999987 46666555 4555555333333444 55555544
No 118
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0045 Score=62.40 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
...+|+.+..+-.+.|.+.+|++-|-+.. |...|.-++....+.|. +++..+.+.-.++..-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad---------Dps~y~eVi~~a~~~~~--------~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD---------DPSNYLEVIDVASRTGK--------YEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC---------CcHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhhcC
Confidence 34677788888778888887777664432 56677888888888888 88877777666655444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR------------- 318 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~------------- 318 (417)
|.. =+.||-+|++.+++.+.++++. .||......+-+-|...|.++.|.-+|...-.
T Consensus 1166 ~~i--d~eLi~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1166 PYI--DSELIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred ccc--hHHHHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 443 3467778888877766655442 14444444444444444445444444432110
Q ss_pred -------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 319 -------KGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 319 -------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
..-.-+..||.-+-.+|...+.+.-| +|...++.....-..-|+.-|-..|-+++...+++.
T Consensus 1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 00001334455554454444433322 222222333344455566666666666666555544
No 119
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0014 Score=62.03 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCh
Q 014860 369 EICRRGRAGEAMKLLKELQNKNLIDG 394 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~~p~~ 394 (417)
++-..|+.++|.+++...+..+.+|.
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 34456666666666666666655444
No 120
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=0.00011 Score=54.27 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKRKGF-VPSSKSYNSLVSALALNG--------EVEETVKNLWEMIEKQRPVDFITYR 364 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 364 (417)
...|..+...+++.....+|..++..|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345555555666666666666666666 666666666666665532 2234566666666666777777777
Q ss_pred HHHHHHHH
Q 014860 365 TVLDEICR 372 (417)
Q Consensus 365 ~li~~~~~ 372 (417)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66666543
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.0038 Score=58.08 Aligned_cols=223 Identities=12% Similarity=0.051 Sum_probs=114.0
Q ss_pred HHHHhccCC-hhHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC-CCCHHHHHHHHHHH
Q 014860 108 CNVMTLQED-PLVCLELFNWASK--QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF-CGTEALYNTIIYFF 183 (417)
Q Consensus 108 l~~l~~~~~-~~~A~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~ 183 (417)
+..+.+.|. +..-.++|+.+.. ..+-+|.... +..=.-..++.+++...+.+...+.. .|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 344455553 5566677777752 2222222221 11112233444455455555443221 24455555555544
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 263 (417)
.....-..+-.++.+-.+. .-...-|..-+. +...|+ .++|+..++.+...- +-|..-+....+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~-----~~~aa~YG~A~~-~~~~~~--------~d~A~~~l~~L~~~~-P~N~~~~~~~~~i 349 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR-----GGLAAQYGRALQ-TYLAGQ--------YDEALKLLQPLIAAQ-PDNPYYLELAGDI 349 (484)
T ss_pred hccccccchHHHHHHHhCc-----cchHHHHHHHHH-HHHhcc--------cchHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4443333333333222221 011222333333 334455 667777777766542 2334444555666
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
+.+.++..+|.+.++.+... .|+ ...+-.+-.+|.+.|++.+|..++++..... +-|...|..|..+|...|+..
T Consensus 350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchH
Confidence 66777777777777766542 243 4455556666677777777777776666542 335666777777777777766
Q ss_pred HHHHHHHHHHH
Q 014860 343 ETVKNLWEMIE 353 (417)
Q Consensus 343 ~A~~~~~~m~~ 353 (417)
++..-..++..
T Consensus 426 ~a~~A~AE~~~ 436 (484)
T COG4783 426 EALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHH
Confidence 66665555443
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00032 Score=65.32 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL 335 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 335 (417)
....|+..+...++++.|.++|+++.+. . |+ ....++..+...++..+|.+++++..+.. +-|......-...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER-D--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc-C--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3355666677789999999999999873 2 55 45567888888899999999999998653 33677778788889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 336 ALNGEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
.+.++.+.|+++.+++.+. .|+. .+|..|..+|...|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999985 5655 5999999999999999999999998763
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0032 Score=64.28 Aligned_cols=217 Identities=10% Similarity=0.067 Sum_probs=143.2
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHH------------------HHHHH
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDV------------------VNQML 164 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~------------------~~~m~ 164 (417)
.+..|+..+...+++++|+++.+...+...-. ...|-.+...+.+.++.+++..+ ...|.
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHH
Confidence 45678888889999999999999765544222 23333333355555555555444 22222
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860 165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ 244 (417)
Q Consensus 165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~ 244 (417)
..+ .+...+..+..+|-+.|+.++|..+++++.+. . +-|..+.|.+...|... + +++|++++.+
T Consensus 111 ~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D-~~n~~aLNn~AY~~ae~-d--------L~KA~~m~~K 174 (906)
T PRK14720 111 LYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKA---D-RDNPEIVKKLATSYEEE-D--------KEKAITYLKK 174 (906)
T ss_pred hhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C-cccHHHHHHHHHHHHHh-h--------HHHHHHHHHH
Confidence 211 23357778888899999999999999999987 2 55788899999999999 8 9999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 014860 245 MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVP 323 (417)
Q Consensus 245 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p 323 (417)
.... +...+++..+.+++..+.. .. |+ +.+.-..+.+.+... |..-
T Consensus 175 AV~~---------------~i~~kq~~~~~e~W~k~~~-~~--~~---------------d~d~f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 175 AIYR---------------FIKKKQYVGIEEIWSKLVH-YN--SD---------------DFDFFLRIERKVLGHREFTR 221 (906)
T ss_pred HHHH---------------HHhhhcchHHHHHHHHHHh-cC--cc---------------cchHHHHHHHHHHhhhccch
Confidence 7754 6666788888888888765 11 22 122222333333322 3333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 324 SSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
-..++-.+-..|-...+++++..+++.+.+.. +-|.....-++..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 44556666677777778888888888877752 224455566666664
No 124
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=7.9e-05 Score=69.61 Aligned_cols=124 Identities=11% Similarity=0.161 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 014860 206 ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND--GIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV 283 (417)
Q Consensus 206 g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (417)
+.+-+......++..+....+ ++.+..++...+.. ....-..|..++|..|.+.|..+.+..++..=..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~--------~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~- 131 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDD--------LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ- 131 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhH--------HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-
Confidence 345566777778888877777 99999999988865 3333345667999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN 338 (417)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 338 (417)
+|+-||..++|.||+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus 132 yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 132 YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887777778887777777665
No 125
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=0.0001 Score=68.95 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=105.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860 248 DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326 (417)
Q Consensus 248 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 326 (417)
.+.+.+......++..+....+++.+..++...+.... ...-..|..++|..|...|..++++.++..=..-|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 45567888889999999999999999999998876321 11223345699999999999999999999988999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
++|.||+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999887777888887777777665
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.03 E-value=0.011 Score=62.71 Aligned_cols=273 Identities=13% Similarity=0.044 Sum_probs=169.5
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCC-----CCC--HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHH
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRF-----RHD--ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALY 176 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~ 176 (417)
...+...+++++|...+..+.....- .+. ......+...+...|++++|...++...+.... .+ ....
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~ 494 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL-TWYYSRIVAT 494 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHH
Confidence 33445778899999888876432110 111 112222234456899999999999988764221 22 2345
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhHhCCC-CCC-CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCC
Q 014860 177 NTIIYFFAEARKLSRAVYVFKYMKNSRN-LEC-RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGI 250 (417)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~g~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~ 250 (417)
+.+...+...|++++|...+++...... .|- .....++..+...+...|+ +++|...+++..+ .+.
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~--------~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF--------LQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHhcc
Confidence 5666777889999999999988865310 010 1112345566777888999 9999988887654 222
Q ss_pred C--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC
Q 014860 251 E--P-DIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG--FV 322 (417)
Q Consensus 251 ~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~ 322 (417)
. + ....+..+...+...|++++|...+.+.... .+.......+..+...+...|++++|.+.+.+..... ..
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~ 646 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR 646 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 1 1 2233445556677789999999998877441 1111123344556667788999999999998875421 11
Q ss_pred CCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 323 PSSK--SY--NSLVSALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 323 p~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
.... .. ...+..+...|+.+.|..++............ ..+..+..++...|+.++|...+.+....
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 647 YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1111 11 11234456689999999998775543211111 11345666788999999999999987664
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.0013 Score=64.61 Aligned_cols=231 Identities=14% Similarity=0.135 Sum_probs=141.9
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC--------CCCHHHHHHHHHH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF--------CGTEALYNTIIYF 182 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~~li~~ 182 (417)
|..-|+.+.|.+-.+.+. +...|..+.+.|.+.++++-|.-.+..|...... .++ .+-....-.
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 456788888877776663 5567888888888777777776666666542211 021 222233334
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK 262 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 262 (417)
..+.|.+++|..+|++-+. |..|=..|-..|. +++|+++-+.=-+..+ ..||-....
T Consensus 810 AieLgMlEeA~~lYr~ckR------------~DLlNKlyQs~g~--------w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR------------YDLLNKLYQSQGM--------WSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH------------HHHHHHHHHhccc--------HHHHHHHHhhccceeh---hhhHHHHHH
Confidence 4567888888888887765 3344455666777 8888776554322221 234444444
Q ss_pred HHHhcCCHHHHHHHHHHhhhh----------C--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860 263 GYILSNHVNDALRIFHQMGVV----------Y--------NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~----------~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 324 (417)
-+-..++.+.|++.|++.... + .-..|...|...-..+-..|+.+.|+.+|...++
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 444556666666665543210 0 0113344455555555566777777777766553
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
|-++++..|-.|+.++|-++-++- | |......|.+.|...|++.+|..+|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566777778888888887776542 2 56666678888888888888888887653
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00029 Score=65.59 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
+-....+|+..+...++++.|+.+|+++.+. .|+. ...++..+...++ ..+|.+++.+..+.. +
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~-----~pev--~~~LA~v~l~~~~--------E~~AI~ll~~aL~~~-p 231 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRER-----DPEV--AVLLARVYLLMNE--------EVEAIRLLNEALKEN-P 231 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhc-----CCcH--HHHHHHHHHhcCc--------HHHHHHHHHHHHHhC-C
Confidence 3456667778888889999999999999987 4554 4568888888888 889999999988653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
-+...+..-...+.+.++.+.|+++.+++... .| +..+|..|..+|...|++++|+..++.+--
T Consensus 232 ~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 232 QDSELLNLQAEFLLSKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 46677777778899999999999999999762 35 456999999999999999999999987753
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.00083 Score=62.29 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS 213 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~ 213 (417)
.|+...+...+.+......-..+..++....+.+ ....-|..-+ .+...|.+++|+..++.+... .+-|..-
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~----~P~N~~~ 342 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA----QPDNPYY 342 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHH-HHHHhcccchHHHHHHHHHHh----CCCCHHH
Confidence 4556666666665554444444444443333311 2223333333 344667777777777777764 2334555
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 292 (417)
+......+...++ .++|.+.++.+... .|+ ....-.+-.+|.+.|+..+|.++++.... ..+-|...
T Consensus 343 ~~~~~~i~~~~nk--------~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~ 410 (484)
T COG4783 343 LELAGDILLEANK--------AKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNG 410 (484)
T ss_pred HHHHHHHHHHcCC--------hHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchH
Confidence 5566667777777 77777777777765 344 44455566777777777777777777654 44566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
|..|..+|...|+..++..-..++.. -.|+++.|...+....+.
T Consensus 411 w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHh
Confidence 77777777777777777776666543 346666666666665554
No 130
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.99 E-value=7.5e-06 Score=46.22 Aligned_cols=27 Identities=41% Similarity=0.787 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
|+.+|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
No 131
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0022 Score=64.45 Aligned_cols=231 Identities=9% Similarity=0.110 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
+..|..+..+-.+.|.+.+|.+-|-.. .|+..|.-+|+...+.|.+++-++.+...++. .-.|.+. +.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk---~~E~~id--~e 1171 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK---VREPYID--SE 1171 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---hcCccch--HH
Confidence 345555555555666666665544322 57788999999999999999999999888876 4466555 48
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-------------
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV------------- 283 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------- 283 (417)
+|-+|++.++ +.+.++.+. -|+......+-+-|...|.++.|.-+|.....-
T Consensus 1172 Li~AyAkt~r--------l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1172 LIFAYAKTNR--------LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHHHhch--------HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999998 666554431 366666666667777777777776666554320
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 014860 284 ------YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP 357 (417)
Q Consensus 284 ------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 357 (417)
..-..++.||--+-.+|...+.+..| .|...++.....-..-|+.-|-..|-+++...+++.-. |+.
T Consensus 1237 Q~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLE 1309 (1666)
T KOG0985|consen 1237 QGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLE 1309 (1666)
T ss_pred HHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chh
Confidence 00012344444444444443333322 22222334455567889999999999999888776543 332
Q ss_pred -CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 358 -VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 358 -p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
.....|+-|.-.|++- ++++.++.++-.-.+ ...-.+|+++.+.
T Consensus 1310 RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR-----vNipKviRA~eqa 1354 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR-----VNIPKVIRAAEQA 1354 (1666)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-----cchHHHHHHHHHH
Confidence 2334677776677765 445555555443332 1223566777655
No 132
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.013 Score=53.53 Aligned_cols=239 Identities=11% Similarity=0.094 Sum_probs=158.4
Q ss_pred HHHhcCCCCCC-HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHH--------
Q 014860 93 CAVSELPPRFN-NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDA-STYHIMTRKLGAAKMYQEMDDVVNQ-------- 162 (417)
Q Consensus 93 ~~l~~~p~~~~-~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~-------- 162 (417)
.....+|+... ...+...+...|+.+.|...|+...-.. |+. .....-...+++.|+.++...+...
T Consensus 223 e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t 299 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT 299 (564)
T ss_pred HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence 33344455442 3445666788999999999999875321 211 1111111123344444444443333
Q ss_pred --------------------------HHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 163 --------------------------MLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 163 --------------------------m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
.++... .+...+-.=.+++...|+.++|.-.|+....-. +-+..+|.-
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La----p~rL~~Y~G 373 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKGRLLIALERHTQAVIAFRTAQMLA----PYRLEIYRG 373 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhccHHHHhccchHHHHHHHHHHHhcc----hhhHHHHHH
Confidence 333222 233344444466778899999999999988641 347889999
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhhhhCCCCCC-HHHH
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI-KGYI-LSNHVNDALRIFHQMGVVYNYLPN-SFSY 293 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~~~~-~~~~ 293 (417)
|+.+|...|+ ..+|.-+-++..+. +.-+..+...+- ..+. ....-++|.++++.-.+ +.|+ ....
T Consensus 374 L~hsYLA~~~--------~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV 441 (564)
T KOG1174|consen 374 LFHSYLAQKR--------FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAV 441 (564)
T ss_pred HHHHHHhhch--------HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHH
Confidence 9999999999 88888776665432 123445554441 2222 22334788888887643 3455 4556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+.+...+...|+.+++..++++-.. ..||...-+.|-+.+.....+.+|++.|......
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7778889999999999999998876 4689999999999999999999999999887764
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.97 E-value=0.00066 Score=53.61 Aligned_cols=106 Identities=9% Similarity=0.018 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+......+...+...|++++|.+.++.+...+. .+...+..+...|.+.|++++|..+|+...+. .+.+...+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----DPDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCChHHHH
Confidence 344455555666677777777777777766543 46677777777777777787777777777654 244566666
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL 257 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 257 (417)
.+...+...|+ .++|.+.|+...+.. |+...+
T Consensus 90 ~la~~~~~~g~--------~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 90 HAAECLLALGE--------PESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhc--cccchH
Confidence 67777777777 777777777777653 444443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0086 Score=51.07 Aligned_cols=188 Identities=11% Similarity=0.119 Sum_probs=103.3
Q ss_pred cCChhHHHHHHHHHHcCCC---CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860 150 AKMYQEMDDVVNQMLATPS---FCGTE-ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG 225 (417)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~---~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g 225 (417)
..+.++..+++..+..... ..++. ..|..++-+...+|+.+.|...++.+..+ ++-+...-..-...+-..|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----fp~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----FPGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHhh
Confidence 4566666666666654321 11332 23455556666677777777777777765 2111111111111223345
Q ss_pred CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860 226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR 305 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 305 (417)
. +++|+++++.+.+.. +.|..++--=+...-..|+--+|.+-+....+ .+..|...|.-+-+.|...|+
T Consensus 101 ~--------~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 101 N--------YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred c--------hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhH
Confidence 5 667777777776655 44555665555555555665566666655554 345667777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 014860 306 TKNARELCDEMKRKGFVP-SSKSYNSLVSALALNG---EVEETVKNLWEMIEK 354 (417)
Q Consensus 306 ~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 354 (417)
+++|.-.++++.-. .| +...+..+...+.-.| +..-|.++|....+.
T Consensus 170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77777777776654 23 3333444444443333 344566666665553
No 135
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.2e-05 Score=45.37 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEKQ 355 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 355 (417)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00072 Score=54.22 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS--KSYNSLV 332 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li 332 (417)
.|..++..+ ..++...+.+.++.+....+-. ......-.+...+...|++++|...|+........|+. ...-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344455545 4888999999999988743221 11233444667788999999999999999987633332 2445577
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
..+...|++++|+..++..... ......+...-..|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8889999999999999774433 33455677788899999999999999876
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.94 E-value=0.00036 Score=67.50 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=99.1
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860 109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK 188 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 188 (417)
++......|.+|+.+++.+. .. +.-..-|..+...|+..|+++.|+++|.+. ..++-.|.+|.++|+
T Consensus 740 eaai~akew~kai~ildniq-dq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQ-DQ--KTASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhh-hh--ccccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhcccc
Confidence 33345667777777777663 22 233445667777888888888888887543 345667888888888
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 268 (417)
|++|.++-++.... ......|-+-..-+-..|+ +.+|+++|-... .|+ .-|.+|-+.|
T Consensus 807 w~da~kla~e~~~~-----e~t~~~yiakaedldehgk--------f~eaeqlyiti~----~p~-----~aiqmydk~~ 864 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGP-----EATISLYIAKAEDLDEHGK--------FAEAEQLYITIG----EPD-----KAIQMYDKHG 864 (1636)
T ss_pred HHHHHHHHHHhcCc-----hhHHHHHHHhHHhHHhhcc--------hhhhhheeEEcc----Cch-----HHHHHHHhhC
Confidence 88888877665432 4455566666666667777 666666553332 233 2355566666
Q ss_pred CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
..++..++.++-... .=..|...+..-|-..|++..|++-|-
T Consensus 865 ~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 865 LDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred cchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 666666665544321 112233344444555555555555443
No 138
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.86 E-value=0.00036 Score=58.11 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860 251 EPDIFSLNSMIKGYIL-----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 325 (417)
..|..+|..+|+.|.+ .|.++-....+..|.+ +|+..|..+|+.||+.+=+ |.+- -..+|..+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc-------
Confidence 5678888888888874 4667777777888887 8888888888888887654 3221 1111111110
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
-| -.+-+-|++++++|...|+.||..|+..|++.+++.+.
T Consensus 114 --------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 12344567777777777777777777777777766654
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.034 Score=55.61 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=154.5
Q ss_pred HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860 147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF--FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR 224 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~ 224 (417)
....+++..|.+....+.+.. |+ ..|..++.+ ..+.|+.++|..+++....-+ ..|..|...+-..|.+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~----~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK----GTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC----CCchHHHHHHHHHHHHH
Confidence 346788999999998888775 33 233344444 358899999999988887652 23888999999999999
Q ss_pred CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860 225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG 304 (417)
Q Consensus 225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 304 (417)
++ .++|..+|+..... -|+..-...+..+|.+.+.+.+-.++--++-+ .++-+...|=++++.+...-
T Consensus 91 ~~--------~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 91 GK--------LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred hh--------hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhc
Confidence 99 99999999998876 47788888899999999988765555444443 22233333333344333221
Q ss_pred -C---------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHH
Q 014860 305 -R---------TKNARELCDEMKRKG-FVPSSKSYNSLVSALALNGEVEETVKNLW-EMIEKQRPVDFITYRTVLDEICR 372 (417)
Q Consensus 305 -~---------~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~ 372 (417)
. .--|.+.++.+.+.+ -.-+..-...-...+-..|.+++|++++. ...+.-..-+...-+.-+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 234666666666654 22233333344455667899999999994 44444333344444556677888
Q ss_pred cCCHhHHHHHHHHHHHCCCCC
Q 014860 373 RGRAGEAMKLLKELQNKNLID 393 (417)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~p~ 393 (417)
.+++++..++-.++..+|.-|
T Consensus 239 l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcChHHHHHHHHHHHHhCCcc
Confidence 999999999999999988544
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.0017 Score=51.25 Aligned_cols=98 Identities=9% Similarity=-0.018 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
+......+...+.+.|++++|...|+..... .+.+...|..+...+...|+ +++|..++++..+.+ +
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY----DPYNSRYWLGLAACCQMLKE--------YEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC-C
Confidence 3344555566666666777777766666553 13355566666666666666 666666666665544 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
.+...+..+-..|...|++++|.+.|+...+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666666666554
No 141
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00062 Score=56.75 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=73.9
Q ss_pred HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 192 AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN 271 (417)
Q Consensus 192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 271 (417)
-...|+..... ..+-.+|..++..|.+... ..++..+-....++.|.+-|+.-|..+|+.||+.+=+ |.+-
T Consensus 33 ~~~~f~~~~~~-----~k~K~~F~~~V~~f~~~~~---~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv 103 (228)
T PF06239_consen 33 HEELFERAPGQ-----AKDKATFLEAVDIFKQRDV---RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV 103 (228)
T ss_pred hHHHHHHHhhc-----cccHHHHHHHHHHHHhcCC---CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc
Confidence 34555555322 4578889999998876521 1122278888889999999999999999999998765 3221
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 272 DALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 340 (417)
-..+|+.+- .-| ..+-+-|+++++.|+..|+.||..|+..|++.+.+.+.
T Consensus 104 -p~n~fQ~~F----------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 -PRNFFQAEF----------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -cccHHHHHh----------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111111 001 11234466666666666666666666666666655543
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0092 Score=50.89 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 235 METIRCLFKQMVN---DG-IEPDIF-SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNA 309 (417)
Q Consensus 235 ~~~a~~~~~~m~~---~g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 309 (417)
.++..+++.++.. .| ..++.. .|..++-+...+|+.+.|...++.+.....-.+-+.-..++ -+-..|++++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhH
Confidence 5666666666653 23 444543 44556666667777777887777776533111222222222 24456777788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 310 RELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
+++++.+.+.. +-|..++.-=+-..-..|+--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++|.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88887777665 335566655555555666666777766666664 5567777777777777777777777777777765
Q ss_pred CCCChhhHHHHHHHH
Q 014860 390 NLIDGYTYTKLLDVL 404 (417)
Q Consensus 390 ~~p~~~t~~~ll~~~ 404 (417)
..-++.-+..+-+.+
T Consensus 184 ~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVL 198 (289)
T ss_pred CCCcHHHHHHHHHHH
Confidence 543444444443333
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.75 E-value=0.0017 Score=49.76 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFV--PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ--RPVDFITYRTVL 367 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li 367 (417)
++-.+...+.+.|++++|.+.|..+.+.... .....+..+..++.+.|++++|...|+.+.... .......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666677777777777777654211 113345556677777777777777777766541 111234555666
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 368 DEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
.++...|+.++|.+.++++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 667777777777777777776643
No 144
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.74 E-value=0.055 Score=53.33 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=163.5
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 014860 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVF 196 (417)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 196 (417)
..++++.++...+..+-.|+..-|-.+ -++..++++.|.+...+..+.+.. .+...|..+.-.+...+++.+|+.+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 456788888887666545555544444 566788999999999999998555 78999999999999999999999998
Q ss_pred HHhHhCCCC----------------CCCCCHHHHHHHHHHHHh---------cCC--------------ccchhhhhHHH
Q 014860 197 KYMKNSRNL----------------ECRPSIRSYNILFTAFLS---------RGK--------------NTYINHVYMET 237 (417)
Q Consensus 197 ~~m~~~~~~----------------g~~p~~~~~~~li~~~~~---------~g~--------------~~~~~~~~~~~ 237 (417)
+...+.-+. +..-...|...++..+-. .|. ...+... ...
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~-sr~ 615 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST-SRY 615 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh-hHH
Confidence 877664100 000112334444444431 000 0000000 000
Q ss_pred HHHHHH-HHHHCC---------CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 014860 238 IRCLFK-QMVNDG---------IE--PD------IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG 299 (417)
Q Consensus 238 a~~~~~-~m~~~g---------~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 299 (417)
+..+.. +....| +. |+ ...|......+.+.+..++|.-.+.+... ...-....|...-..
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLL 693 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHH
Confidence 111111 111111 00 11 11223344555566666677666666544 222344455555556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 014860 300 LCAQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVK--NLWEMIEKQRPVDFITYRTVLDEICRRGRA 376 (417)
Q Consensus 300 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 376 (417)
+...|.+++|.+.|.....- .| ++....++..++.+.|+-.-|.. ++.++.+.+ +-+...|..+-..+-+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch
Confidence 66778888888888877664 33 45677888888888888777777 888877763 45667888888888888888
Q ss_pred hHHHHHHHHHHHCC
Q 014860 377 GEAMKLLKELQNKN 390 (417)
Q Consensus 377 ~~A~~~~~~m~~~~ 390 (417)
++|-+.|....+..
T Consensus 771 ~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 771 KQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888766543
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.71 E-value=0.025 Score=53.49 Aligned_cols=175 Identities=11% Similarity=0.085 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP-DIFSLNSMIKGYILS 267 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 267 (417)
.+.....+++..... ...|+ .+|...|....+..- ++.|..+|.+..+.+..+ ++.+++++|.-||.
T Consensus 347 ~~~~~~~~~~ll~~~--~~~~t-Lv~~~~mn~irR~eG--------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIE--DIDLT-LVYCQYMNFIRRAEG--------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hhhhHHHHHHHHhhh--ccCCc-eehhHHHHHHHHhhh--------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 556666777776652 33444 457777887777777 999999999999988777 88899999998874
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 014860 268 NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~ 345 (417)
++...|.++|+-=.+++| -+..--...+.-+...++-..+..+|++....++.|| ...|..+|.--..-|++..+.
T Consensus 415 kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 678899999986555343 3334446778888899999999999999999877666 478999999999999999999
Q ss_pred HHHHHHHHc-C--CCCCHHHHHHHHHHHHHcCCHh
Q 014860 346 KNLWEMIEK-Q--RPVDFITYRTVLDEICRRGRAG 377 (417)
Q Consensus 346 ~~~~~m~~~-g--~~p~~~~~~~li~~~~~~g~~~ 377 (417)
++-+++... . ..+...+-..+++-|.-.+...
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 988887664 1 2233334455666666555543
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.70 E-value=0.048 Score=51.62 Aligned_cols=127 Identities=11% Similarity=0.065 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 272 DALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVKNLWE 350 (417)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (417)
.....+++........|+. +|...|+...+..-++.|..+|.+..+.+..+ ++..+++++.-||. ++.+-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 3444444444433444443 67778888888888999999999999887776 77888889988875 678889999986
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---ChhhHHHHHH
Q 014860 351 MIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI---DGYTYTKLLD 402 (417)
Q Consensus 351 m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p---~~~t~~~ll~ 402 (417)
=..+ |- +..--...+.-+...|+-..|..+|++....+++ ....|..+|+
T Consensus 427 GLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 427 GLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 5554 32 3334456677778888888888899988888663 4456777665
No 147
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.69 E-value=0.03 Score=55.12 Aligned_cols=212 Identities=15% Similarity=0.125 Sum_probs=151.1
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC
Q 014860 130 QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP 209 (417)
Q Consensus 130 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p 209 (417)
...+..|...|..+.-++...|+++.+-+.|++....-. .....|+.+-..|..+|.-..|+.++++-.... .-++
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps 391 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPS 391 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCC
Confidence 344678999999999999999999999999999876544 567889999999999999999999999877641 1123
Q ss_pred CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH--CC--CCCCHHHHHHHHHHHHh-----------cCCHHHHH
Q 014860 210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--DG--IEPDIFSLNSMIKGYIL-----------SNHVNDAL 274 (417)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--~g--~~p~~~~~~~li~~~~~-----------~g~~~~a~ 274 (417)
|...+-..-..|.+.-. . .++++++-.+..+ .| -......|-.+--+|.. .....++.
T Consensus 392 ~~s~~Lmasklc~e~l~--~-----~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLK--L-----VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred cchHHHHHHHHHHhchh--h-----hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 34444444444444322 1 4444444443333 11 12334445544444442 12356788
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 275 RIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 275 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+.+++..+..+..|++..|-++- |+-.++.+.|.+...+..+-+-.-+...|..|.-.+...+++.+|+.+.+...+.
T Consensus 465 qale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 88888877556667776666665 5566789999999999998866778999999999999999999999999887765
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.0057 Score=48.98 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC---HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS---IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~---~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|+ +++|...|+...+....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~----~~s~ya~~A~l~lA~~~~~~g~--------~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY----PSSPYAALAALQLAKAAYEQGD--------YDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCCC
Confidence 344444444 3566666666666666541 111 1222234455556666 66666666666655422
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 252 PDI--FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDE 315 (417)
Q Consensus 252 p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 315 (417)
++. ...-.+...+...|++++|+..++.... . ......+...-..|.+.|++++|...|+.
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQIPD-E--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-c--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 211 1222344555556666666666655322 1 12233444555556666666666665553
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.0018 Score=46.61 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR 372 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 372 (417)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 33444555556666666666666554421 133455555666666666666666666655542 2233455555566666
Q ss_pred cCCHhHHHHHHHHHHH
Q 014860 373 RGRAGEAMKLLKELQN 388 (417)
Q Consensus 373 ~g~~~~A~~~~~~m~~ 388 (417)
.|+.++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665544
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0033 Score=48.05 Aligned_cols=102 Identities=11% Similarity=-0.010 Sum_probs=62.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l 217 (417)
++-.....+.+.|++++|.+.+..+.+..... .....+..+..++.+.|+++.|.+.|+.+.... .+......++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHH
Confidence 34455556666777777777777776543210 123455566777777777777777777776531 0111124456666
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
...+...|+ .++|.+.++++.+..
T Consensus 83 ~~~~~~~~~--------~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGD--------KEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCC--------hHHHHHHHHHHHHHC
Confidence 666777777 777777777777654
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0022 Score=57.61 Aligned_cols=128 Identities=9% Similarity=0.058 Sum_probs=81.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE-ARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l 217 (417)
+|..+++..-+.+..+.|+++|.+..+.+. .+..+|-.....-.+ .++.+.|.++|+...+. +..+...|..-
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~~~~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT-HHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCCHHHHHHH
Confidence 566667777777777777777777775543 233444444444233 45566677777777764 45566677777
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI----FSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+.-+...++ .+.|..+|++.... .+.. ..|...++.=.+.|+++.+.++.+++.+
T Consensus 77 ~~~l~~~~d--------~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 77 LDFLIKLND--------INNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHTT---------HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHhCc--------HHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777 77777777777654 2333 3777777777777777777777777765
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.044 Score=47.99 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH-HH---HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI-RS---YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~-~~---~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
+...+-.....+.+.|++++|.+.|+++... .|+. .. .-.+..++.+.++ +++|...+++..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy~~~~--------y~~A~~~~e~fi~ 97 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNAD--------LPLAQAAIDRFIR 97 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHH
Confidence 3333434555566789999999999999886 3432 22 2346677888999 9999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHh--cC---------------CH---HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 248 DGIEPDIFSLNSMIKGYIL--SN---------------HV---NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTK 307 (417)
Q Consensus 248 ~g~~p~~~~~~~li~~~~~--~g---------------~~---~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (417)
....-...-+...+.+.+. .+ +. .+|.+.|+. +|.-|=...-..
T Consensus 98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~ 161 (243)
T PRK10866 98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTT 161 (243)
T ss_pred hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHH
Confidence 6433333344444444432 11 11 123333333 444444444455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 308 NARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 308 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
+|..-+..+... =..---.+.+-|.+.|.+..|..-++.+.+. +-+........++.+|...|..++|..+..-
T Consensus 162 ~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 162 DATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 665555554432 1111224567788899999999999999987 5555666777888999999999999888766
Q ss_pred HHH
Q 014860 386 LQN 388 (417)
Q Consensus 386 m~~ 388 (417)
+..
T Consensus 238 l~~ 240 (243)
T PRK10866 238 IAA 240 (243)
T ss_pred Hhc
Confidence 543
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.058 Score=49.16 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA 334 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 334 (417)
.+.+..|.-+...|+...|.++-.+..- |+..-|-..|.+++..++|++-+++-.. . -++.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-----~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-----PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-----cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 4566677788889999998888777654 9999999999999999999988876543 1 244679999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
|.+.|+..+|..+..+ .++..-+..|.+.|++.+|.+.--+.
T Consensus 247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999988876 12356678889999999987764433
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0035 Score=56.29 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS 290 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 290 (417)
.+|..++...-+.+. .+.|.++|.+.++.+ +..+.....++|. |...++.+.|.++|+...+. +..+.
T Consensus 2 ~v~i~~m~~~~r~~g--------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~ 70 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG--------IEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-H
T ss_pred HHHHHHHHHHHHhCC--------hHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCH
Confidence 578888988888888 999999999998654 2344444455554 33356777799999998874 45677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS---KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVL 367 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 367 (417)
..|..-++.+.+.|+.+.|..+|++.... +.++. ..|...+.-=.+.|+++.+.++.+++.+. -|+......++
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 88889999999999999999999998865 33222 48999999999999999999999988875 33433344444
Q ss_pred HH
Q 014860 368 DE 369 (417)
Q Consensus 368 ~~ 369 (417)
+-
T Consensus 148 ~r 149 (280)
T PF05843_consen 148 DR 149 (280)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0032 Score=45.26 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=50.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860 142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF 221 (417)
Q Consensus 142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~ 221 (417)
.+...+...|++++|..+++...+... .+...+..+...+...|++++|.+.|+..... .+.+..++..+...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~ 78 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALEL----DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcchhHHHHHHHHH
Confidence 344445555666666666666555432 23345555556666666666666666665543 122334555555666
Q ss_pred HhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 222 LSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 222 ~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
...|+ .++|...+....+
T Consensus 79 ~~~~~--------~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGK--------YEEALEAYEKALE 96 (100)
T ss_pred HHHHh--------HHHHHHHHHHHHc
Confidence 66666 6666666655543
No 156
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.46 E-value=0.075 Score=47.56 Aligned_cols=270 Identities=13% Similarity=0.046 Sum_probs=178.1
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHH---HHHccCChhHHHHHHHHHHcCCCCCCCHHH-HHHHHHH
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTR---KLGAAKMYQEMDDVVNQMLATPSFCGTEAL-YNTIIYF 182 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~li~~ 182 (417)
+...+...|++..|+.-|..+. ..|+..|..+.+ .|...|+-..|..=++..++.. ||-.. --.-...
T Consensus 44 lGk~lla~~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~v 115 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchh
Confidence 4455566788999999998875 345666666554 5677888888888788777754 44222 1122345
Q ss_pred HHHhCCHHHHHHHHHHhHhCCC-CCCC--------CCHHHHH--HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 183 FAEARKLSRAVYVFKYMKNSRN-LECR--------PSIRSYN--ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~-~g~~--------p~~~~~~--~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
+.+.|.+++|..=|+....... .|.. +....|+ ..+..+.-.|+ ...|++....+.+.. +
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD--------~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD--------CQNAIEMITHLLEIQ-P 186 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc--------hhhHHHHHHHHHhcC-c
Confidence 7799999999999999887520 0111 1112222 34455667788 899999999988765 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS---- 327 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---- 327 (417)
.|...+..-..+|...|++..|..-++...+ . ..-++.++--+-..+...|+.+.++...++..+. .||-..
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask-L-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASK-L-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHh-c-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 7888899999999999999999877776655 2 2355666666777788889999998888887764 455432
Q ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChh
Q 014860 328 YNSL---------VSALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGY 395 (417)
Q Consensus 328 ~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~ 395 (417)
|..| +....+.++|-++++-.+...+..-.... ..+..+-.++...|++.+|++...+..+....|..
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 2111 12233456677777766666654211112 23445555667778888888888888776433444
Q ss_pred hH
Q 014860 396 TY 397 (417)
Q Consensus 396 t~ 397 (417)
++
T Consensus 343 ~l 344 (504)
T KOG0624|consen 343 VL 344 (504)
T ss_pred HH
Confidence 43
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.01 Score=53.43 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhH
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMK 200 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~ 200 (417)
.|......|-..|++++|...|....
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 34444555566666666666666553
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.37 E-value=0.025 Score=46.77 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
..+..+...+...|++++|...|++......-.+ ....+..+...+.+.|++++|...+.+..+... -+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3455555666667777777777776654211111 134566666666777777777777766665421 13445555555
Q ss_pred HHHhcCCHHH
Q 014860 334 ALALNGEVEE 343 (417)
Q Consensus 334 ~~~~~g~~~~ 343 (417)
+|...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 6666555433
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0058 Score=56.95 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=84.3
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860 109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK 188 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 188 (417)
..+...++++.|++.|+.+.+.. +.+...|..+..++...|++++|...++.+.+... .+...|..+..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 44567899999999999998655 56788898999999999999999999999998765 577889999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILF 218 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li 218 (417)
+++|+..|++..+. .|+.......+
T Consensus 86 ~~eA~~~~~~al~l-----~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL-----APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 99999999999975 45544444333
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.32 E-value=0.028 Score=46.45 Aligned_cols=89 Identities=10% Similarity=-0.003 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
...+..+...|...|++++|...|++..+.. .-.+ ....|..+...+.+.|+ +++|...+++..+.. +
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p 103 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGE--------HDKALEYYHQALELN-P 103 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-c
Confidence 3445555556666666666666666665431 0011 13455566666666666 666666666665542 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH
Q 014860 252 PDIFSLNSMIKGYILSNHVND 272 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~ 272 (417)
-+...+..+...+...|+...
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHh
Confidence 233444444555555555433
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00052 Score=49.20 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 014860 303 QGRTKNARELCDEMKRKGF-VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMK 381 (417)
Q Consensus 303 ~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 381 (417)
.|+++.|+.+++++.+... .++...+-.+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666665422 11333344456666666666666666655 21111 122223333555666666666666
Q ss_pred HHHH
Q 014860 382 LLKE 385 (417)
Q Consensus 382 ~~~~ 385 (417)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.017 Score=44.19 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 014860 297 IHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD----FITYRTVLDEI 370 (417)
Q Consensus 297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~ 370 (417)
-.++-..|+.++|+.+|++....|.... ...+-.+-..+...|+.++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3455667888888888888887776544 3456667777888888888888888777651 32 22222333466
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860 371 CRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
...|+.++|++.+-..... +...|..-|..|.+
T Consensus 86 ~~~gr~~eAl~~~l~~la~---~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE---TLPRYRRAIRFYAD 118 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 7788888888877665543 23366666666654
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.21 E-value=0.0011 Score=47.45 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860 267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK 346 (417)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 346 (417)
.|+++.|..+++++.+.....++...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777765322112344455567777777777777777766 21111 123334445677777777777777
Q ss_pred HHHH
Q 014860 347 NLWE 350 (417)
Q Consensus 347 ~~~~ 350 (417)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.18 E-value=0.17 Score=45.62 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhhCCCCC----
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS-NHVNDALRIFHQMGVVYNYLP---- 288 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~---- 288 (417)
|...+..|...|+ ...|-+++.++- ..|-.. |+++.|.+.|++..+.+.-..
T Consensus 97 ~~~A~~~y~~~G~--------~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 97 YEKAIEIYREAGR--------FSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHCT---------HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHhcCc--------HHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 4444445666776 666655554433 334444 667777777666543111111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-----VPSSK-SYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDF 360 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~ 360 (417)
-..++..+...+.+.|++++|.++|+++...-. +.+.. .|-..+-++...|+...|.+.+++.... ++..+.
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 133455667778888888888888888775422 12222 2233344556678888888888887755 333332
Q ss_pred --HHHHHHHHHHHH--cCCHhHHHHHHHHHHH
Q 014860 361 --ITYRTVLDEICR--RGRAGEAMKLLKELQN 388 (417)
Q Consensus 361 --~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 388 (417)
.....||.+|-. ...++++..-|+.+..
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 345556666543 2234455555544443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.013 Score=48.14 Aligned_cols=102 Identities=8% Similarity=-0.090 Sum_probs=70.7
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Q 014860 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYV 195 (417)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 195 (417)
+..+...+..+.++.+..--...|..+...+...|++++|...++.........+ ...++..+...|...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444433333233455667777788889999999999999987643212 245888999999999999999999
Q ss_pred HHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860 196 FKYMKNSRNLECRPSIRSYNILFTAFL 222 (417)
Q Consensus 196 ~~~m~~~~~~g~~p~~~~~~~li~~~~ 222 (417)
++..... .+....++..+...+.
T Consensus 95 ~~~Al~~----~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALER----NPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHh----CcCcHHHHHHHHHHHH
Confidence 9998875 1333556677776776
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.002 Score=43.82 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=45.9
Q ss_pred HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860 148 GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF 218 (417)
Q Consensus 148 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li 218 (417)
...|++++|.++++.+....+ .+...+..+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-----DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-----GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 356788888888888877654 46777778888888888888888888888875 56655554443
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.12 E-value=0.097 Score=53.23 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=127.5
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 014860 116 DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYV 195 (417)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 195 (417)
+...|+..|-...+.. .-=...|..|...|..-.+...|.+.|+...+.+. .+...+......|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHH
Confidence 3555555554443222 12245566666777666677777778877777665 5677777888888888888888777
Q ss_pred HHHhHhCCCCCCCCCHHH--HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 196 FKYMKNSRNLECRPSIRS--YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDA 273 (417)
Q Consensus 196 ~~~m~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 273 (417)
.-..-+.. +--... |...--.|...++ ...+..-|+...+.. +-|...|..+..+|..+|++..|
T Consensus 549 ~l~~~qka----~a~~~k~nW~~rG~yyLea~n--------~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 549 CLRAAQKA----PAFACKENWVQRGPYYLEAHN--------LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHHhhhc----hHHHHHhhhhhccccccCccc--------hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehH
Confidence 33333220 111122 2223333455555 777777777766554 44677888888888888888888
Q ss_pred HHHHHHhhhhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 274 LRIFHQMGVVYNYLPNSFSYDYLI--HGLCAQGRTKNARELCDEMKRK------GFVPSSKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 274 ~~~~~~m~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~ 345 (417)
.++|.+... +.|+. +|...- -.-|..|++.+|...+...... +-.--..++-.+...+.-.|-..+|.
T Consensus 616 lKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav 691 (1238)
T KOG1127|consen 616 LKVFTKASL---LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV 691 (1238)
T ss_pred HHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 888887765 12332 333222 2346678888888888776543 11112334444444444445445555
Q ss_pred HHHHHHH
Q 014860 346 KNLWEMI 352 (417)
Q Consensus 346 ~~~~~m~ 352 (417)
.++++-+
T Consensus 692 d~~eksi 698 (1238)
T KOG1127|consen 692 DFFEKSI 698 (1238)
T ss_pred HHHHHHH
Confidence 5555443
No 168
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.10 E-value=0.0099 Score=45.98 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN---------------DGIEPDIFSLNSMIKGYILSNHVNDAL 274 (417)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~a~ 274 (417)
|..++.++|.++++.|+ ++....+.+..=. ..+.|+..+..+++.+|+..|++..|.
T Consensus 1 de~~~~~ii~al~r~g~--------~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al 72 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQ--------LDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL 72 (126)
T ss_pred ChHHHHHHHHHHhhcCC--------HHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 45788999999999999 8888777765321 124577888888888888888888888
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860 275 RIFHQMGVVYNYLPNSFSYDYLIHGLCAQG 304 (417)
Q Consensus 275 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 304 (417)
++++...+.++++.+..+|..|++-.....
T Consensus 73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 73 KLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 888888887888888888888887654443
No 169
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.27 Score=46.65 Aligned_cols=103 Identities=10% Similarity=-0.027 Sum_probs=76.2
Q ss_pred HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCC
Q 014860 110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARK 188 (417)
Q Consensus 110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~ 188 (417)
+....|+++.|+..|....... ++|...|..-..+++..|++++|.+=-.+-.+.. |+ ...|+-...++.-.|+
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhccc
Confidence 3456788999999998886555 5688888888889999999988877666555544 33 5678888888888899
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF 221 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~ 221 (417)
+++|+.-|.+-.+. -+.+...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~----d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK----DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhc----CCchHHHHHhHHHhh
Confidence 99999999887765 133455566666665
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.09 E-value=0.017 Score=53.89 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=84.6
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR 224 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~ 224 (417)
..+...|++++|.+.+++.++... .+...|..+..+|.+.|++++|+..+++.... -+.+...|..+..+|...
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIEL----DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHh
Confidence 456688999999999999998775 57888999999999999999999999999875 134677899999999999
Q ss_pred CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860 225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI 261 (417)
Q Consensus 225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 261 (417)
|+ +++|...|++..+.. |+.......+
T Consensus 84 g~--------~~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 84 EE--------YQTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred CC--------HHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 99 999999999999764 5544444444
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.09 E-value=0.17 Score=44.28 Aligned_cols=185 Identities=10% Similarity=0.007 Sum_probs=111.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860 143 MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALY---NTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT 219 (417)
Q Consensus 143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~ 219 (417)
....+...|++++|.+.|+.+....+. +.... -.+..+|.+.+++++|...|++..+.- .-.|+ ..|...+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~--P~~~~-~~~a~Y~~ 112 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPN-IDYVLYMR 112 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--cCCCc-hHHHHHHH
Confidence 344456789999999999999886643 22222 355678889999999999999998762 11222 23444444
Q ss_pred HHHh--cCC----------ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860 220 AFLS--RGK----------NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL 287 (417)
Q Consensus 220 ~~~~--~g~----------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 287 (417)
+.+. .++ ...-+.....+|++.|+++.+. |=.+.-..+|..-+..+...
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---- 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---- 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----
Confidence 4332 110 0000001133455555555543 33333345555544444331
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352 (417)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 352 (417)
.-. .--.+..-|.+.|.+..|..=++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 174 la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111 1124566688888888888888888875 444456677788899999999998888776554
No 172
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.07 E-value=0.012 Score=45.49 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 014860 320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEIC 371 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~ 371 (417)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46688888899999998899999999988888777 77778888888888543
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.06 E-value=0.06 Score=43.88 Aligned_cols=132 Identities=12% Similarity=0.064 Sum_probs=96.1
Q ss_pred hHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCC
Q 014860 89 TQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPS 168 (417)
Q Consensus 89 ~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 168 (417)
....+.+..-|....--.|..++.+.|+..+|...|.... ..-+..|....-.+.++....+++..|...++.+.+.+.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3344455555555555567788888899999999998874 444677888888888888888999999999988887664
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 169 FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 169 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
...+..+.-.+.+.|...|.+.+|..-|+..... .|+...-...-..+.+.|+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-----ypg~~ar~~Y~e~La~qgr 208 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISY-----YPGPQARIYYAEMLAKQGR 208 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhcc
Confidence 3344555667778888899999999999988864 6665554444444556665
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.04 E-value=0.076 Score=42.40 Aligned_cols=86 Identities=12% Similarity=-0.077 Sum_probs=37.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 014860 300 LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA 379 (417)
Q Consensus 300 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 379 (417)
+...|++++|..+|+-+..-... +..-|-.|--+|-..|++.+|...|....... +-|...+-.+-.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 34444444444444444433211 33334444444444444444444444444432 12333444444444444554444
Q ss_pred HHHHHHHH
Q 014860 380 MKLLKELQ 387 (417)
Q Consensus 380 ~~~~~~m~ 387 (417)
.+-|+..+
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 44444433
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.04 E-value=0.24 Score=45.15 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
.+.+..|.-+...|+ ...|.++-.+.. .||..-|-..|.+++..++|++-.++... + .+..
T Consensus 178 ~Sl~~Ti~~li~~~~--------~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPI 238 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQ--------EKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPI 238 (319)
T ss_pred CCHHHHHHHHHHCCC--------HHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCC
Confidence 456667888888998 888888877664 68999999999999999999988876543 1 3447
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWE 350 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (417)
.|..++.+|.+.|...+|..++..+ .+..-+..|.+.|++.+|.+.--+
T Consensus 239 GyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 239 GYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred ChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999999999999988872 235567888999999999776443
No 176
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.1 Score=51.96 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=31.8
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
.-|-.++|+.+|+.-. + |..+=..|-..|.+++|.++-+.-.+... ..||..-...+-..++.+.|
T Consensus 812 eLgMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL----r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL----RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHhhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHHHHhhccceeh----hhhHHHHHHHHHhhccHHHH
Confidence 4455566666665542 1 12222333445555555555443333222 13444444444444555555
Q ss_pred HHHHH
Q 014860 193 VYVFK 197 (417)
Q Consensus 193 ~~~~~ 197 (417)
++.|+
T Consensus 878 leyyE 882 (1416)
T KOG3617|consen 878 LEYYE 882 (1416)
T ss_pred HHHHH
Confidence 44444
No 177
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.03 E-value=0.17 Score=43.05 Aligned_cols=185 Identities=10% Similarity=0.073 Sum_probs=84.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
....+.+.|++++|.+.|+.+...- .+-+--....-.+..++.+.|+ ++.|...++++.+.-..-...-+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~--------y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGD--------YEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCCcchhhH
Confidence 3344556677777777777776541 0111123344556666667777 777777777766542111112222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVV-YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL 337 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 337 (417)
..+.+.+......... ....+ ....--...+..+|.-|=...-..+|...+.++.+. =...--.+..-|.+
T Consensus 82 ~Y~~g~~~~~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHHHHHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 2222222111111110 00000 000000123444444555555555665555554432 01112224566777
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860 338 NGEVEETVKNLWEMIEK--QRPVDFITYRTVLDEICRRGRAGEAM 380 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~ 380 (417)
.|.+..|..-++.+.+. +.+........++.+|.+.|..+.+.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78888888888777776 22122234566777777777766443
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.03 E-value=0.036 Score=45.54 Aligned_cols=116 Identities=13% Similarity=-0.060 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchh
Q 014860 153 YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYIN 231 (417)
Q Consensus 153 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~ 231 (417)
+..+.+.+..+.+..........|..+...+...|++++|+..|++..... .-.+ ...+|..+-..+...|+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~~~~~~~~~~lg~~~~~~g~----- 87 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDPYDRSYILYNIGLIHTSNGE----- 87 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHHcCC-----
Confidence 344444555553322221335677888888889999999999999997651 1111 23578899999999999
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 014860 232 HVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI-------LSNHVNDALRIFHQ 279 (417)
Q Consensus 232 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~~~a~~~~~~ 279 (417)
.++|++.++...+.. +....++..+...+. ..|+++.|...+++
T Consensus 88 ---~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 88 ---HTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred ---HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 999999999988753 333455666666666 66666655544443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.88 E-value=0.077 Score=51.93 Aligned_cols=139 Identities=11% Similarity=-0.001 Sum_probs=96.0
Q ss_pred CCHHHHHHHHh--cc---CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc--------CChhHHHHHHHHHHcCCC
Q 014860 102 FNNEELCNVMT--LQ---EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAA--------KMYQEMDDVVNQMLATPS 168 (417)
Q Consensus 102 ~~~~~ll~~l~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~ 168 (417)
..|...+++.. .. ++...|+++|+.+.+.. +-....|..+..++... .+++.+.+........+.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 35666777653 22 33779999999997654 33455555544333221 123344444444444322
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 169 FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 169 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
...+...|.++.-.+...|++++|...|++.... .|+...|..+...+...|+ .++|.+.|++....
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-----~ps~~a~~~lG~~~~~~G~--------~~eA~~~~~~A~~L 482 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-----EMSWLNYVLLGKVYELKGD--------NRLAADAYSTAFNL 482 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhc
Confidence 3256678888877777889999999999999986 6789999999999999999 99999999998876
Q ss_pred CCCCCHHHH
Q 014860 249 GIEPDIFSL 257 (417)
Q Consensus 249 g~~p~~~~~ 257 (417)
. |...||
T Consensus 483 ~--P~~pt~ 489 (517)
T PRK10153 483 R--PGENTL 489 (517)
T ss_pred C--CCCchH
Confidence 4 444444
No 180
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.43 Score=45.35 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=123.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860 140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT 219 (417)
Q Consensus 140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~ 219 (417)
...+.++.-+..+++.+.+-+....+.. .+..-++....+|...|++.++...-+...+.+ .-...-|+.+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g----re~rad~klIak 299 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVG----RELRADYKLIAK 299 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh----HHHHHHHHHHHH
Confidence 4456666677778888888888877765 355566677778888888888777776666552 112334555555
Q ss_pred HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH-HHHHHHH
Q 014860 220 AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF-SYDYLIH 298 (417)
Q Consensus 220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~ 298 (417)
++.+.|. .+.....++.++..|.+.....-.||... +....+++++..+...- +.|... -.-.=-+
T Consensus 300 ~~~r~g~-a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 300 ALARLGN-AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGN 366 (539)
T ss_pred HHHHhhh-hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHH
Confidence 5555332 22222337888888877654433333211 11222333333322221 112210 0111134
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 014860 299 GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGE 378 (417)
Q Consensus 299 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 378 (417)
.+.+.|++..|...|.++.... +-|...|..-.-+|.+.|.+..|+.=-+.-.+. -++....|..=..++.-..++++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777766654 225566666666666777666666655555543 12222233333334444556666
Q ss_pred HHHHHHHHHHCC
Q 014860 379 AMKLLKELQNKN 390 (417)
Q Consensus 379 A~~~~~~m~~~~ 390 (417)
|++.|.+-.+.+
T Consensus 445 Aleay~eale~d 456 (539)
T KOG0548|consen 445 ALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHhcC
Confidence 666666666554
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.87 E-value=0.12 Score=50.64 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
...|.++-......|++++|...+++... . .|+...|..+...+...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID-L--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444445555555555555544 1 24555555555555555666555555555444
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.005 Score=41.83 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 303 QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 303 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
.|++++|.++|+.+...... |...+..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444333111 333333444444444444444444444443
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.85 E-value=0.0066 Score=40.84 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=42.0
Q ss_pred HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 144 TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
...+.+.|++++|.+.++.+.+..+ .+...+..+..++.+.|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888888888888877763 46777777778888888888888888877654
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.25 Score=42.70 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (417)
.+.++..+.-.|. +.-...++.+..+...+-++.....|.+.-.+.|+.+.|...|++.++.. -..|..++
T Consensus 180 my~~~~~llG~kE--------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~ 250 (366)
T KOG2796|consen 180 MYSMANCLLGMKE--------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQG 250 (366)
T ss_pred HHHHHHHHhcchh--------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccch
Confidence 3455555656666 77777888888887767778888888888889999999999999776632 22333333
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014860 294 DY-----LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRT 365 (417)
Q Consensus 294 ~~-----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 365 (417)
+. ....|.-.+++.+|...+.++....-. |....|.-.-+..-.|+..+|++.++.|... .|...+-+.
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 33 333455667888888888887765422 5555555444455568899999999999876 455444443
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.76 E-value=0.047 Score=43.58 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
....-.+..-+...|++++|.++|+.+....+ -+..-|-.|.-++-..|++++|+..|.....- . +-|...+-.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~-~ddp~~~~~ 108 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---K-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---C-CCCchHHHH
Confidence 33444445566789999999999999988876 57778888888899999999999999998875 2 456788888
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
+-.++...|+ .+.|.+.|+.....
T Consensus 109 ag~c~L~lG~--------~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDN--------VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence 9999999999 99999999877653
No 186
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.75 E-value=0.092 Score=53.41 Aligned_cols=166 Identities=11% Similarity=0.028 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860 211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS 290 (417)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 290 (417)
...|..|-..|+..-+ +..|.+.|+...+.. .-|...+....+.|+...+++.|..+.-...+......-.
T Consensus 492 apaf~~LG~iYrd~~D--------m~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDD--------MKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred hHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 4567777777777777 889999999888765 4567788889999999999999999844443311111112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD-- 368 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-- 368 (417)
.-|...--.|...++...|..-|+.......+ |...|..+..+|..+|++..|.++|.+.... .|+. +|...-.
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~ 638 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAV 638 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHH
Confidence 22333333456677888888888887766444 7888999999999999999999999887764 4543 3333333
Q ss_pred HHHHcCCHhHHHHHHHHHHHC
Q 014860 369 EICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~ 389 (417)
.-+..|.+++|+..+......
T Consensus 639 ~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 346788888888888877653
No 187
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.72 E-value=0.42 Score=43.00 Aligned_cols=247 Identities=10% Similarity=0.029 Sum_probs=164.7
Q ss_pred ChhHHHHHHhcCCCCCCHHH-HHHHHhccCChhHHHHHHHHhhcCCCC-CCCHHHHHH------------HHHHHHccCC
Q 014860 87 DDTQFRCAVSELPPRFNNEE-LCNVMTLQEDPLVCLELFNWASKQPRF-RHDASTYHI------------MTRKLGAAKM 152 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~~~~~-ll~~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~------------li~~~~~~~~ 152 (417)
....+.+.+...|+-..... -..++.++|..+.|..-|+.+.+...- ....+.+.. .+..+...|+
T Consensus 91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 44557777777776432211 133457899999999999998753310 011122221 2334557789
Q ss_pred hhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhh
Q 014860 153 YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINH 232 (417)
Q Consensus 153 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~ 232 (417)
...|+.....+++..+ .|...|..-..+|...|++..|+.=++...+- -..++.++--+-..+...|+
T Consensus 171 ~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~ykis~L~Y~vgd------ 238 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHYKISQLLYTVGD------ 238 (504)
T ss_pred hhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhhhh------
Confidence 9999999999988765 78888999999999999999998877776654 13456777777788888898
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHhhhhCCCCCC-----HHHHH
Q 014860 233 VYMETIRCLFKQMVNDGIEPDIFSLNSM-------------IKGYILSNHVNDALRIFHQMGVVYNYLPN-----SFSYD 294 (417)
Q Consensus 233 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ 294 (417)
.+.++...++-.+. .||...+-.. +......++|.++.+-.+...+ . .|. ...+.
T Consensus 239 --~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk-~--ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 239 --AENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK-N--EPEETMIRYNGFR 311 (504)
T ss_pred --HHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-c--CCcccceeeeeeh
Confidence 88888888877765 4665433111 1223445667666666666544 2 232 22233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
.+-.++...|++.+|++...+..+. .|| +.++.-=..+|..-..+|.|..=|+...+.
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4555566677888888888887764 444 677777777787777888888888877765
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.72 E-value=0.18 Score=38.68 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-CCCHHHHHH
Q 014860 219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD--IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY-LPNSFSYDY 295 (417)
Q Consensus 219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~~ 295 (417)
.++-..|+ .++|+.+|++..+.|+... ...+-.+-..+...|++++|..+|++......- .-+......
T Consensus 9 ~a~d~~G~--------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 9 WAHDSLGR--------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHHhcCC--------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 34455666 6777777777776665433 223344555566667777777777666542110 001222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 014860 296 LIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~ 317 (417)
+..++...|+.++|+..+-...
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3335556666666666665544
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.018 Score=46.10 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITY 363 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~ 363 (417)
+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+..+|.++|+.+... |+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455556666677777777777666543 235666777777777777777777776665432 666666543
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.064 Score=42.84 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH-----HC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV-----ND 248 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~-----~~ 248 (417)
.+...++..+...|++++|.++.+.+... -+.+...|..+|.+|...|+ ...|.++|+++. +.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~--------~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGR--------RAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcC--------HHHHHHHHHHHHHHHHHHh
Confidence 35566777788899999999999999986 25577889999999999999 999999998875 35
Q ss_pred CCCCCHHHHH
Q 014860 249 GIEPDIFSLN 258 (417)
Q Consensus 249 g~~p~~~~~~ 258 (417)
|+.|+..+-.
T Consensus 131 g~~Ps~~~~~ 140 (146)
T PF03704_consen 131 GIEPSPETRA 140 (146)
T ss_dssp S----HHHHH
T ss_pred CcCcCHHHHH
Confidence 8888876644
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.59 E-value=0.054 Score=47.94 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS----SKSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRT 365 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ 365 (417)
.|...+..+.+.|++++|...|+.+.+.- |+ ...+-.+..+|...|++++|...|+.+.+. +-......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444455566777776666666542 22 234556666666777777777777776654 11112233444
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 366 VLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
+...+...|+.++|..+|+++.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566677777777777766655
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.55 E-value=0.017 Score=38.82 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=23.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 299 GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 299 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
.+...|++++|...|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 11334444444444444444444444444443
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.039 Score=48.41 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=85.0
Q ss_pred hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHH
Q 014860 112 TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSR 191 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 191 (417)
...+++.+|+..|..+.+-. +-|..-|..-..+|.+.|.++.|++=.+..+..+. .-..+|..|-.+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcHHH
Confidence 56789999999999997554 56888899999999999999999999988888764 457899999999999999999
Q ss_pred HHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860 192 AVYVFKYMKNSRNLECRPSIRSYNILFTAF 221 (417)
Q Consensus 192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~ 221 (417)
|++.|+...+ +.|+-.+|-.=+...
T Consensus 168 A~~aykKaLe-----ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALE-----LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhc-----cCCCcHHHHHHHHHH
Confidence 9999999886 478877765544433
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.58 Score=46.07 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=49.1
Q ss_pred HHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHH------HHHHccCChhHHHHHHHHHHcC
Q 014860 93 CAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMT------RKLGAAKMYQEMDDVVNQMLAT 166 (417)
Q Consensus 93 ~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~ 166 (417)
+-....|.+..|..+.+.....-..+.|...|-+...-.|++.-...-...- ..-+--|.+++|++++-+|.++
T Consensus 684 qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 684 QFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 3344556666777666666555566666666655533333322111111100 1112346777777777666554
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 014860 167 PSFCGTEALYNTIIYFFAEARKLSRAVYVFK 197 (417)
Q Consensus 167 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 197 (417)
+ ..|..+.+.|++-++.++++
T Consensus 764 D----------LAielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 764 D----------LAIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred h----------hhHHHHHhhhhHHHHHHHHH
Confidence 3 24555566666655555544
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.37 E-value=0.44 Score=39.07 Aligned_cols=164 Identities=10% Similarity=0.006 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860 101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180 (417)
Q Consensus 101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 180 (417)
..+-..+..++...=|++..++-...- -...|+...--.+..++.+.|+..+|...|++...-..- .|....-.+.
T Consensus 56 ~R~a~~~~~a~~q~ldP~R~~Rea~~~---~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA 131 (251)
T COG4700 56 DRHAHTLLMALQQKLDPERHLREATEE---LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLA 131 (251)
T ss_pred cchhHHHHHHHHHhcChhHHHHHHHHH---HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHH
Confidence 334444555555555555544433322 223577777777888888888888888888888764444 7777777888
Q ss_pred HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
++....+++..|...++.+-+....+-.||. .-.+-+.+...|+ .+.|+.-|+.....- |+...---.
T Consensus 132 ~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~g~--------~a~Aesafe~a~~~y--pg~~ar~~Y 199 (251)
T COG4700 132 QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQGK--------YADAESAFEVAISYY--PGPQARIYY 199 (251)
T ss_pred HHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHhcCC--------chhHHHHHHHHHHhC--CCHHHHHHH
Confidence 8888888888888888888776333334443 3456677777888 788888888887764 443333333
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 014860 261 IKGYILSNHVNDALRIFHQM 280 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m 280 (417)
-..+.+.|+.+++..-+..+
T Consensus 200 ~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 200 AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcchhHHHHHHHHH
Confidence 34456667666555444333
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.33 E-value=0.018 Score=39.13 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhHhC
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR-KLSRAVYVFKYMKNS 202 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~ 202 (417)
+...|..+...+...|++++|...|++..+... .+...|..+..+|.+.| ++++|++.|+...+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 466788888888899999999999999988764 56788888889999998 699999998887653
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.16 Score=44.81 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=97.1
Q ss_pred hHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---ccCChhHHHHHHHHHH
Q 014860 89 TQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG---AAKMYQEMDDVVNQML 164 (417)
Q Consensus 89 ~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~ 164 (417)
..++..+...|.. ..|..|.++|...++...|..-|....+..| +++..+..+..++. ...+..++.++++++.
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3445566666654 6899999999999999999999999987764 56666655555543 4447788999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860 165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL 222 (417)
Q Consensus 165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~ 222 (417)
+.+. .|+..-..|...+...|++.+|...|+.|.+. -|....+..+|..-.
T Consensus 221 ~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-----lp~~~~rr~~ie~~i 271 (287)
T COG4235 221 ALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-----LPADDPRRSLIERSI 271 (287)
T ss_pred hcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCCchHHHHHHHH
Confidence 9886 67888888899999999999999999999985 344455666665543
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.32 E-value=0.025 Score=38.42 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHH
Q 014860 325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG-RAGEAMKLLKELQN 388 (417)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 388 (417)
..+|..+-..+...|++++|+..|.+..+.. +-+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666666541 223345555555666666 46666666655544
No 199
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.32 E-value=0.037 Score=48.07 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860 251 EPDIFSLNSMIKGYIL-----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 325 (417)
+-|-..|-+.+..+.. .+.++-....++.|.+ +|+..|..+|+.||+.+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk----------------fiP~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK----------------FIPQN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc----------------cccHH
Confidence 4566666666666643 3556666667777777 788888888887776654321 22221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA 376 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 376 (417)
.+-...--|=++ -+=+.+++++|...|+.||..+-..|++++++.|..
T Consensus 127 -vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 -VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 122222222222 233688999999999999999999999999988864
No 200
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.30 E-value=0.8 Score=41.33 Aligned_cols=158 Identities=13% Similarity=0.196 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHH
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI---EPDIFSLNSMIKGYI 265 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~ 265 (417)
+++.+.+++.|++. |++-+..+|-+........ +.... .....++.++|+.|++... .++...+..++..
T Consensus 78 ~~~~~~~y~~L~~~---gFk~~~y~~laA~~i~~~~-~~~~~-~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~-- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA---GFKRSEYLYLAALIILEEE-EKEDY-DEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM-- 150 (297)
T ss_pred HHHHHHHHHHHHHh---ccCccChHHHHHHHHHHhc-ccccH-HHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--
Confidence 55677899999997 7888876666544444331 11111 2227889999999998643 3556667666654
Q ss_pred hcCC----HHHHHHHHHHhhhhCCCCCCHH-HHHHHHHHHHhc-CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 266 LSNH----VNDALRIFHQMGVVYNYLPNSF-SYDYLIHGLCAQ-GR--TKNARELCDEMKRKGFVPSSKSYNSLVSALAL 337 (417)
Q Consensus 266 ~~g~----~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 337 (417)
..++ .+.++.+|+.+.+ .|+..+-. -+.+-|-+++.. .. ...+.++++.+.+.|+++....|..+--...-
T Consensus 151 ~~~~~e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 151 TSEDVEELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred ccccHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 3333 3567788888887 67665433 233333333322 22 45788999999999999888776655333222
Q ss_pred cCC----HHHHHHHHHHHHHc
Q 014860 338 NGE----VEETVKNLWEMIEK 354 (417)
Q Consensus 338 ~g~----~~~A~~~~~~m~~~ 354 (417)
.+. ++...++.+.+.+.
T Consensus 230 ~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 230 EDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred CCchHHHHHHHHHHHHHHhhC
Confidence 222 33444455555544
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=1.4 Score=43.91 Aligned_cols=262 Identities=13% Similarity=0.084 Sum_probs=152.6
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC-----
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRF----RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF----- 169 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----- 169 (417)
.+.++|..+.+..-..|+++.|..+.+.-. +.+. -.+...+...+.-+...|+.+....++-.+...-..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 455788888888888999999999887542 2211 113344555666677888888888877777664211
Q ss_pred -----CCCHHHHHHHHHH--------HHHhCCHHHHHHHHH--HhHhCC-CCCCCCCHHHHHHHHHHHHhcCCccchhhh
Q 014860 170 -----CGTEALYNTIIYF--------FAEARKLSRAVYVFK--YMKNSR-NLECRPSIRSYNILFTAFLSRGKNTYINHV 233 (417)
Q Consensus 170 -----~~~~~~~~~li~~--------~~~~g~~~~a~~~~~--~m~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~~~~~ 233 (417)
+.....|.-+++- +.+.++-..+..-|. ...... ..|..|+. ...-..+.+....+...+.
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHH
Confidence 0111122222210 001111111111111 000000 00112222 2223333333321111111
Q ss_pred --hHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 234 --YMETIRCLFKQMVN-DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNAR 310 (417)
Q Consensus 234 --~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (417)
...+-+++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+- ||-..|-.=+.+++..+++++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHH
Confidence 01222233333332 23334445566667778889999999999988876 99999999999999999999888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 014860 311 ELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLK 384 (417)
Q Consensus 311 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 384 (417)
++-+.++. +.-|.-.+.+|.+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--
T Consensus 736 kfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 736 KFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 87766552 344777889999999999999988654321 157788999999998887643
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.25 E-value=0.5 Score=45.84 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=49.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHH-----HHHHHHHHHc----cCChhHHHHHHH
Q 014860 91 FRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDAST-----YHIMTRKLGA----AKMYQEMDDVVN 161 (417)
Q Consensus 91 ~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~----~~~~~~a~~~~~ 161 (417)
|+-.++-+|+. ...+++.+.-.||-+..++.+....+..++.-..-+ |+.++..+.. ....+.|.++++
T Consensus 180 f~L~lSlLPp~--~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~ 257 (468)
T PF10300_consen 180 FNLVLSLLPPK--VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLE 257 (468)
T ss_pred HHHHHHhCCHH--HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHH
Confidence 33444445442 334556666666666666666666544443322222 2222222221 334555555555
Q ss_pred HHHcCCCCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHhH
Q 014860 162 QMLATPSFCGTEALYNTI-IYFFAEARKLSRAVYVFKYMK 200 (417)
Q Consensus 162 ~m~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~ 200 (417)
.+.+.- |+...|... .+.+...|++++|++.|+...
T Consensus 258 ~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 258 EMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 555543 343333322 234444555666666655433
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.18 E-value=0.13 Score=45.55 Aligned_cols=104 Identities=7% Similarity=0.030 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
...|...+..+.+.|++++|...|+.+.+..+..+ ....+-.+...|...|++++|...|+.+.+.- .+-+.....+-
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHH
Confidence 45566666666677999999999999988764211 13577788889999999999999999998651 01122245555
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
.+...+...|+ .++|.++|+++.+..
T Consensus 222 klg~~~~~~g~--------~~~A~~~~~~vi~~y 247 (263)
T PRK10803 222 KVGVIMQDKGD--------TAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHHC
Confidence 56677778899 999999999988763
No 204
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.18 E-value=0.088 Score=45.84 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhc-----CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------
Q 014860 209 PSIRSYNILFTAFLSR-----GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN--------------- 268 (417)
Q Consensus 209 p~~~~~~~li~~~~~~-----g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------------- 268 (417)
.|-.+|-+++..+... +. ++-....++.|.+-|++-|..+|+.||+.+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~H--------veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP 136 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTH--------VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP 136 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccch--------HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc
Confidence 3555566655555433 22 4555555666666777777777776666554321
Q ss_pred -CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860 269 -HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR 305 (417)
Q Consensus 269 -~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 305 (417)
+-+-+.+++++|+. .|+.||..+-..|++++++.+-
T Consensus 137 ~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 137 QQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence 12446677777776 6777777777777777766654
No 205
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.15 E-value=0.37 Score=46.12 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
.-.+.+++.+-+.|..+.|+++-.+-. .-.....+.|+ ++.|.++-++ ..+
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------~rFeLAl~lg~--------L~~A~~~a~~------~~~ 346 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD---------------HRFELALQLGN--------LDIALEIAKE------LDD 346 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH---------------HHHHHHHHCT---------HHHHHHHCCC------CST
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH---------------HHhHHHHhcCC--------HHHHHHHHHh------cCc
Confidence 445556666666666666665533322 22333455555 5555544332 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
...|..|-+...+.|+++.|++.|.+... |..|+-.|.-.|+.+...++.+.....|- +|....
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 55666666666666666666666665554 44555555566666555555555554431 444444
Q ss_pred HHHhcCCHHHHHHHHH
Q 014860 334 ALALNGEVEETVKNLW 349 (417)
Q Consensus 334 ~~~~~g~~~~A~~~~~ 349 (417)
++.-.|++++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4445555555555443
No 206
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.13 E-value=0.43 Score=36.68 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.++..++..+.... -+..-+|-+|--....-+-+-..++++.+.+-+.+.+-. -.-.++..|+..|.
T Consensus 18 V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--------- 84 (161)
T PF09205_consen 18 VKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--------- 84 (161)
T ss_dssp HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---------
Confidence 77777777777653 244455555555555556666677777776533332210 01122333333222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860 315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 392 (417)
+...+...+..+...|+-|.-.+++.++.+ .-.+++...-.+..||.+.|+..++.+++.+.-+.|++
T Consensus 85 ---------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ---------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -----------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333455566677777777777777777664 23466666667777777777777777777777777753
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.43 Score=42.18 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI 250 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~ 250 (417)
.|...|-.|...|...|+++.|..-|....+.. .++...+..+..++....+... ..++..+|+++....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~-----ta~a~~ll~~al~~D- 223 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQM-----TAKARALLRQALALD- 223 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcc-----cHHHHHHHHHHHhcC-
Confidence 455566666666666666666666666655541 2233344444444333322111 455555666655543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+-|..+...|-..+...|++.+|...++.|.+
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 23444444455555556666666666666544
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.99 E-value=0.055 Score=37.17 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=40.9
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
..+.+.+++++|.++++.+....+ .+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456677777777777777777654 46667777777777777887777777777765
No 209
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.13 Score=45.36 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=85.5
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHh
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLS 223 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~ 223 (417)
+-+.+.+++++|.+.|.+.++..+ .|.+.|..-..+|++.|.++.|++=.+..... .| -..+|..|-.+|..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHc
Confidence 356789999999999999999875 68889999999999999999999998888875 33 36789999999999
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 224 RGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK 262 (417)
Q Consensus 224 ~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 262 (417)
.|+ +++|++.|+...+. .|+-.+|-.=+.
T Consensus 162 ~gk--------~~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 162 LGK--------YEEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred cCc--------HHHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999 99999999988765 687777655443
No 210
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.92 E-value=0.63 Score=36.75 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860 178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG 225 (417)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g 225 (417)
.+|..+.+.+.......+++.+... + ..+....|.++..|++..
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~---~-~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL---N-SENPALQTKLIELYAKYD 55 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc---C-ccchhHHHHHHHHHHHHC
Confidence 4444454555555555555555543 2 234445555555555443
No 211
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.90 E-value=1.2 Score=39.90 Aligned_cols=228 Identities=11% Similarity=0.030 Sum_probs=126.0
Q ss_pred ccCChhHHHHHHHHHHcCC-CCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHhHhC----C-CCCCCCC-----H
Q 014860 149 AAKMYQEMDDVVNQMLATP-SFCGTE------ALYNTIIYFFAEARKLSRAVYVFKYMKNS----R-NLECRPS-----I 211 (417)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~-~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~g~~p~-----~ 211 (417)
+.|+++.|..++.+..... ...|+. ..||.-...+.+..+++.|...+++..+. + .....|+ .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666655543 211221 23333333333333776666655544332 1 0022333 3
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
.+...++.+|...+.... .++|..+++.+..... -...++-.-+..+.+.++.+.+.+++.+|.... .-...
T Consensus 85 ~iL~~La~~~l~~~~~~~-----~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~ 156 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYES-----VEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSES 156 (278)
T ss_pred HHHHHHHHHHHcCCChHH-----HHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccc
Confidence 467778888888877333 7778888888865532 224455566777777899999999999998732 22334
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcC------CHHHHHHHHHHHHHc-CC
Q 014860 292 SYDYLIHGL---CAQGRTKNARELCDEMKRKGFVPSSK-SYN-SLVS---ALALNG------EVEETVKNLWEMIEK-QR 356 (417)
Q Consensus 292 ~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~-~li~---~~~~~g------~~~~A~~~~~~m~~~-g~ 356 (417)
.+..++..+ .... ...|...+..+....+.|... ... .++. .....+ .++...++++...+. +.
T Consensus 157 ~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~ 235 (278)
T PF08631_consen 157 NFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK 235 (278)
T ss_pred hHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC
Confidence 555555554 4433 345666666666555555553 111 1111 111211 155555566644433 44
Q ss_pred CCCHHHHHHHHH-------HHHHcCCHhHHHHHHHH
Q 014860 357 PVDFITYRTVLD-------EICRRGRAGEAMKLLKE 385 (417)
Q Consensus 357 ~p~~~~~~~li~-------~~~~~g~~~~A~~~~~~ 385 (417)
+.+..+-.++.. .+.+.+++++|.+.|+-
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 555555444433 35678899999999874
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.88 E-value=0.03 Score=39.17 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEK----QR-PVD-FITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555666666665555554432 11 111 234555555566666666666666554
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.88 E-value=1.5 Score=40.70 Aligned_cols=86 Identities=8% Similarity=0.077 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh---cCCccchhhhhHHHHHHHHHHHHHC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS---RGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
+..+...++-.|....+++..+++.+.+..-+...+.-....--...-++.+ .|+ .++|++++..+...
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------re~Al~il~~~l~~ 211 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------REKALQILLPVLES 211 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------HHHHHHHHHHHHhc
Confidence 3444456666799999999999999999985321112222222234445556 677 99999999996666
Q ss_pred CCCCCHHHHHHHHHHHH
Q 014860 249 GIEPDIFSLNSMIKGYI 265 (417)
Q Consensus 249 g~~p~~~~~~~li~~~~ 265 (417)
.-.++..+|..+-..|-
T Consensus 212 ~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIYK 228 (374)
T ss_pred cCCCChHHHHHHHHHHH
Confidence 55788888877776664
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=1.1 Score=38.97 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
.+.+.+++.+.-.|.+.-...++.+..+. .-+.+......+.+.-.+.|| .+.|...|++..+..-+.|
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~~MQ~GD--------~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRISMQIGD--------IKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHhhhh
Confidence 45667778788888898899999998886 445577778888899999999 9999999998876555666
Q ss_pred HHHHHHHH-----HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 254 IFSLNSMI-----KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328 (417)
Q Consensus 254 ~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 328 (417)
..+.+.++ ..|.-.+++..|...++++....+ .|...-|.=.-+..-.|+..+|.+.++.|... .|...+-
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 66665554 335556788888888888865322 33333343333344467899999999999875 4555444
Q ss_pred HHHH
Q 014860 329 NSLV 332 (417)
Q Consensus 329 ~~li 332 (417)
++++
T Consensus 323 es~~ 326 (366)
T KOG2796|consen 323 ESVL 326 (366)
T ss_pred hhHH
Confidence 4443
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.85 E-value=0.27 Score=46.29 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS----KSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
...|+.+-.+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444455555555555555444432 2221 2344444555555555555555544444
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.84 E-value=0.99 Score=38.35 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=90.6
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH--HHHHHHHHHH
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI--RSYNILFTAF 221 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~--~~~~~li~~~ 221 (417)
..+...|++.+|.+.|+.+....+..+ -....-.++.++.+.|+++.|...|++..+. .|+. ..+...+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcchhhHHHHHHH
Confidence 345577888888888888877543212 2344556677888888888888888887765 2321 1233333333
Q ss_pred HhcCC--cc---chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 014860 222 LSRGK--NT---YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL 296 (417)
Q Consensus 222 ~~~g~--~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 296 (417)
+.-.. .. .-+.....+|...| ..+|.-|=.+.-..+|...+..+... .-. .--.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~----la~-~e~~i 147 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNR----LAE-HELYI 147 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHH----HHH-HHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHH----HHH-HHHHH
Confidence 22111 00 00000123333333 34444454555556665555555431 111 11224
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 297 IHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVSALALNGEVEET 344 (417)
Q Consensus 297 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A 344 (417)
..-|.+.|.+..|..-++.+.+. +..-.....-.++.+|.+.|..+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 55677788888888888777765 1111234456677777777777644
No 217
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.81 E-value=0.81 Score=37.17 Aligned_cols=139 Identities=12% Similarity=0.196 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG--RTKNAREL 312 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l 312 (417)
..-..+.++.+.+.|++|+...+..+|+.+.+.|++.....++ . +++-+|.......+-.+.... -.+-|.+.
T Consensus 10 i~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 10 IAVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHH
Confidence 3345667777888999999999999999999999976655544 4 555677776666654444322 13445555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 313 CDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 313 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
+.++.. .+..+++.+...|++-+|+++.+..... +......++++-.+.++...-..+++-..+++
T Consensus 85 LkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 85 LKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 555543 3677888899999999999998775432 22233557778788888777777777666654
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.75 E-value=2.2 Score=41.80 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI------- 361 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------- 361 (417)
+..+...+...+.+...+..|-++|..|-+ ..+++......++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 344455555555566667778888887764 245677778888888888877765543 34432
Q ss_pred ----HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 362 ----TYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 362 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
-|.-.-.+|.++|+-.||.++++++.+..+
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 133344578889999999999998877654
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.70 E-value=0.64 Score=43.43 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860 211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289 (417)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 289 (417)
..+|...|....+..- ++.|..+|-+..+.| +.+++.+++++|.-++ .|+...|.++|+-=.... ||
T Consensus 397 t~v~C~~~N~v~r~~G--------l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d 464 (660)
T COG5107 397 TFVFCVHLNYVLRKRG--------LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PD 464 (660)
T ss_pred hhHHHHHHHHHHHHhh--------HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CC
Confidence 4567778888777777 899999999999988 5788999999998766 567888999998654422 44
Q ss_pred HHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014860 290 SFSY-DYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTV 366 (417)
Q Consensus 290 ~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 366 (417)
...| +-.+.-+.+.++-+.|..+|+..... +..+ ...|..+|.--..-|++..+..+=+.|.+. -|...+....
T Consensus 465 ~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF 541 (660)
T COG5107 465 STLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVF 541 (660)
T ss_pred chHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHH
Confidence 4444 45667778889999999999854432 2223 457899999888999998888877777764 4444444444
Q ss_pred HHHHH
Q 014860 367 LDEIC 371 (417)
Q Consensus 367 i~~~~ 371 (417)
..-|.
T Consensus 542 ~Sry~ 546 (660)
T COG5107 542 TSRYA 546 (660)
T ss_pred HHHHh
Confidence 44443
No 220
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.69 E-value=1.5 Score=39.53 Aligned_cols=153 Identities=11% Similarity=0.228 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhhhCCC--CCCHHHHHHHHHHHHhcCC-
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYIL--SN----HVNDALRIFHQMGVVYNY--LPNSFSYDYLIHGLCAQGR- 305 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~- 305 (417)
+++...+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++.+.+ .++-.++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 78888999999999999998888764333333 22 356799999999986543 3455566666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh-cCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCC--
Q 014860 306 ---TKNARELCDEMKRKGFVPSSK-SYNSLVSALAL-NGE--VEETVKNLWEMIEKQRPVDFITYRTVLDE-ICRRGR-- 375 (417)
Q Consensus 306 ---~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~-~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~-- 375 (417)
.+.++..|+.+.+.|+..+-. -+.+-+-+++. ... +.++.++++.+.+.|+++....|..+.-. +...+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 456788899999888765432 33333333332 222 45789999999999999888887655332 222222
Q ss_pred -HhHHHHHHHHHHHC
Q 014860 376 -AGEAMKLLKELQNK 389 (417)
Q Consensus 376 -~~~A~~~~~~m~~~ 389 (417)
.++..++.+.+.+.
T Consensus 236 ~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHhhC
Confidence 44445555555544
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.69 E-value=0.039 Score=37.98 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=51.5
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCC
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPS 168 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 168 (417)
-+.+.+.++++.|+++++.+.+.. +.+...+......+...|++++|.+.++...+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356788999999999999998654 56888888889999999999999999999998774
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.66 E-value=0.91 Score=43.53 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=109.0
Q ss_pred HHHHHhCCHHHHHHHHH--HhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 181 YFFAEARKLSRAVYVFK--YMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 181 ~~~~~~g~~~~a~~~~~--~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
....-.++++++.++.+ ++... -| ..-.+.++.-+-+.|. .+.|+++-.+-.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~-----i~-~~~~~~i~~fL~~~G~--------~e~AL~~~~D~~------------ 322 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN-----IP-KDQGQSIARFLEKKGY--------PELALQFVTDPD------------ 322 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--------HHHHHHHHHHHHHTT---------HHHHHHHSS-HH------------
T ss_pred HHHHHcCChhhhhhhhhhhhhccc-----CC-hhHHHHHHHHHHHCCC--------HHHHHhhcCChH------------
Confidence 34455788888777775 22221 12 4557888888889998 999988764322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN 338 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 338 (417)
.-.+...++|+++.|.++.++. .+...|..|-+...+.|+++.|++.|.+..+ |..|+-.|.-.
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~ 386 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST 386 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC
T ss_pred HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh
Confidence 3455677899999998876555 4677999999999999999999999998664 77888889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 339 GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 339 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
|+.++..++.+.....|. ++....++.-.|+.++..+++.+-
T Consensus 387 g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 999998888887777652 556666667778888887776553
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.55 E-value=0.048 Score=38.09 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
..+|+.+...+...|++++|++.+++..+. |...++ ..+++.+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677777888888888888888777753 211122 56778888888888999999888887654
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.50 E-value=0.27 Score=45.26 Aligned_cols=279 Identities=13% Similarity=0.029 Sum_probs=164.9
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHc----CCCCCCCHHHHHHH
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDAS----TYHIMTRKLGAAKMYQEMDDVVNQMLA----TPSFCGTEALYNTI 179 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~~l 179 (417)
.+-+++.|+...-+.+|+.+.+.. .-|.. .|..+-++|.-.+++++|.+.+..=+- .|...........|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 345789999999999999987533 23333 455566677778899999886542111 11110122233334
Q ss_pred HHHHHHhCCHHHHHHHHHHhHh-CCCCCC-CCCHHHHHHHHHHHHhcCCcc------------chhhhhHHHHHHHHHHH
Q 014860 180 IYFFAEARKLSRAVYVFKYMKN-SRNLEC-RPSIRSYNILFTAFLSRGKNT------------YINHVYMETIRCLFKQM 245 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~-~~~~g~-~p~~~~~~~li~~~~~~g~~~------------~~~~~~~~~a~~~~~~m 245 (417)
-..+--.|.+++|+-.-.+-.. .+.+|- ......+-.+-..|...|+.. .-....++.|.+.|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 4444455666666443221110 000010 122345556777777776610 00111256666666542
Q ss_pred H----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh---hhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 246 V----NDGI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMG---VVYNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEM 316 (417)
Q Consensus 246 ~----~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m 316 (417)
. +.|- -.--..|..|-..|.-.|+++.|....+.-. +.+|-. .-...+..+-+++.-.|+++.|.+.|+.-
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 2 2221 0122456666666777889998887655321 113322 23456778888999999999998888764
Q ss_pred HH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 317 KR----KGF-VPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 317 ~~----~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
.. .|- .....+.-+|-..|.-..++++|+.++.+=..- ...-....|..|-.+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 221 223456677888888888999999888753321 22335678899999999999999999887765
Q ss_pred HH
Q 014860 387 QN 388 (417)
Q Consensus 387 ~~ 388 (417)
++
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 44
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.21 E-value=2.6 Score=39.14 Aligned_cols=167 Identities=14% Similarity=-0.002 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhhCCCCC
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG---IEPDIFSLNSMIKGYIL---SNHVNDALRIFHQMGVVYNYLP 288 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~ 288 (417)
-.++-+|....+ ++...++.+.|...- +.-...+--...-++-+ .|+.++|.+++..+.. ..-.+
T Consensus 145 ~~lllSyRdiqd--------ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~ 215 (374)
T PF13281_consen 145 INLLLSYRDIQD--------YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENP 215 (374)
T ss_pred HHHHHHhhhhhh--------HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCC
Confidence 355556888888 999999999998751 11122233344556666 8999999999999544 34557
Q ss_pred CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-H---HHHHHHH---H-HH
Q 014860 289 NSFSYDYLIHGLCA---------QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE-V---EETVKNL---W-EM 351 (417)
Q Consensus 289 ~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~---~~A~~~~---~-~m 351 (417)
+..+|..+...|-. ....++|...|.+--+. .||..+=-.+...+.-.|. . .+..++- . ..
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 77788777666542 22367788888766554 3454332222222222332 1 1222222 2 22
Q ss_pred HHcCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860 352 IEKQR---PVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 352 ~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 392 (417)
.++|. ..+---+.+++.++.-.|+.++|.+..++|.....|
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23332 234445678899999999999999999999988654
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.14 E-value=0.77 Score=43.29 Aligned_cols=67 Identities=10% Similarity=-0.055 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE-ALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
.+...++.+..+|...|++++|...+++.++.....+.. .+|..+..+|.+.|+.++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555554443210001 2355555555555555555555555544
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.92 E-value=1.5 Score=34.64 Aligned_cols=132 Identities=10% Similarity=0.051 Sum_probs=78.1
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT 178 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 178 (417)
.+......++..+...+.+...+.+++++.... ..+...++.++..+++.+. ++..+.+.. . .+......
T Consensus 5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~-----~~~yd~~~ 74 (140)
T smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDN--K-----SNHYDIEK 74 (140)
T ss_pred CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----cccCCHHH
Confidence 344566677777777777888888888876543 3567777777777776543 222233331 1 23344455
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc-CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR-GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL 257 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 257 (417)
+++.|.+.+.++++.-++..+... ...+..+... ++ .+.|.+.+.+ .-+...|
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~~------------~~Al~~~l~~~~d--------~~~a~~~~~~------~~~~~lw 128 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGNF------------KDAIVTLIEHLGN--------YEKAIEYFVK------QNNPELW 128 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcCH------------HHHHHHHHHcccC--------HHHHHHHHHh------CCCHHHH
Confidence 777777777777777777766431 2233333333 56 6777666654 1245566
Q ss_pred HHHHHHHHh
Q 014860 258 NSMIKGYIL 266 (417)
Q Consensus 258 ~~li~~~~~ 266 (417)
..++..+..
T Consensus 129 ~~~~~~~l~ 137 (140)
T smart00299 129 AEVLKALLD 137 (140)
T ss_pred HHHHHHHHc
Confidence 666665543
No 228
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.90 E-value=4.5 Score=40.21 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 014860 261 IKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~ 282 (417)
|..+.+.|++-+|-+++.+|.+
T Consensus 930 Ie~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhH
Confidence 4456667777777777777743
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.70 E-value=2.6 Score=36.57 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
-...|+.-+. -.+.|++++|.+.|+.+..+- .+-+-...+--.++-++-+.++ +++|+...++....-..
T Consensus 34 ~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~--------y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 34 ASELYNEGLT-ELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGE--------YDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHhCCC
Confidence 3345554444 447899999999999998762 1223345666677888888998 99999999988765433
Q ss_pred CCHHHHHHHHHHHHhc-------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860 252 PDIFSLNSMIKGYILS-------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 252 p~~~~~~~li~~~~~~-------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 324 (417)
-...-|-..|.+.+.- .+...+.+-+..+.+ +|.-|=...=...|..-+..+... =
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~-------------~i~ryPnS~Ya~dA~~~i~~~~d~----L 166 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE-------------LVQRYPNSRYAPDAKARIVKLNDA----L 166 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH-------------HHHHCCCCcchhhHHHHHHHHHHH----H
Confidence 3334555556555532 222233333333322 111111111122222222222211 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCh
Q 014860 325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDG 394 (417)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 394 (417)
..-=-.+.+-|.+.|.+..|..-+++|.+. .+-+. ...-.+..+|-..|..++|...- ..+..+.|+.
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCC
Confidence 001123456788888998898888888887 22222 34556677888899888888774 4444455543
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=5.6 Score=39.85 Aligned_cols=261 Identities=13% Similarity=0.115 Sum_probs=136.4
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKM---YQEMDDVVNQMLATPSFCGTEALYNTI 179 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~~l 179 (417)
+...++.-+...+.+..|+++-.|+. .+-.. ....|......+.+..+ -+-+..+-+++.. .. -....|..+
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~-~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~--~~~iSy~~i 513 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLN-LPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL--TPGISYAAI 513 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhC-Ccccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC--CCceeHHHH
Confidence 44567777888889999999999984 22111 25666666666655532 2222223333222 22 334667778
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCC--CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC--------
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLEC--RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-------- 249 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-------- 249 (417)
.+....+|+.+-|..+++.=...+. .+ -.+..-+...+.-+...|+ .+....++.+|...-
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~-qV~lLL~m~~~~~AL~kaies~d--------~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGE-QVPLLLKMKDSSLALKKAIESGD--------TDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccc-hhHHHhccchHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHHH
Confidence 8877889999999888775443310 00 0122234445555555665 333333333222210
Q ss_pred ---CCCCHHHH----------------------------------------------HHHHHHHHhcCCH----------
Q 014860 250 ---IEPDIFSL----------------------------------------------NSMIKGYILSNHV---------- 270 (417)
Q Consensus 250 ---~~p~~~~~----------------------------------------------~~li~~~~~~g~~---------- 270 (417)
.+.....| ...-+++.+....
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 00000111 1111222222111
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWE 350 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (417)
.+-.++.+.+....|..-..-+.+--+.-+...|+..+|.++-.+.+ .||-..|-.=+.+++..++|++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11112222222223333333344444555666677777776665544 35777777777888888888776665444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 351 MIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 351 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
++ .+.-|.-++.+|.+.|+.+||.+++.+..
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 33 23346667778888888888888776543
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=0.9 Score=39.69 Aligned_cols=98 Identities=20% Similarity=0.244 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVY-NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPS-SKSYNSLV 332 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-~~~~~~li 332 (417)
.|+.-+. +.+.|++..|...|....+.+ +-.-....+-.|.+++...|++++|..+|..+.+. +-.|- ..++--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 234444555555555554421 00011222334455555555555555555555443 11111 23344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 014860 333 SALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
.+..+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555555555555554443
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.24 E-value=2.5 Score=41.55 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=124.9
Q ss_pred CCHHHHHHHHhccCC--hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860 102 FNNEELCNVMTLQED--PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI 179 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 179 (417)
..++..-.+|.+-++ +-+-+.-++.+ ++.|-.|+.... ...|+-.|.+.+|-++|.+ .|.. |-.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~-k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e-------nRA 664 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEER-KKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE-------NRA 664 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHH-HhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch-------hhH
Confidence 345555566644443 44445555566 355556766543 3456678889998888864 3322 344
Q ss_pred HHHHHHhCCHHHHHHHHHHhH-------hCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHH-----H-HH
Q 014860 180 IYFFAEARKLSRAVYVFKYMK-------NSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFK-----Q-MV 246 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~-------~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~-----~-m~ 246 (417)
+.+|...+.+|.|.+++..-. -++......++.-=.+....+...|+ .++|..+.- + +.
T Consensus 665 lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe--------~~KAi~i~~d~gW~d~li 736 (1081)
T KOG1538|consen 665 LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGE--------HVKAIEICGDHGWVDMLI 736 (1081)
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccc--------hhhhhhhhhcccHHHHHH
Confidence 556666666666665543211 00000000011111133445556676 444444321 1 11
Q ss_pred HCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014860 247 NDGI---EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP 323 (417)
Q Consensus 247 ~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 323 (417)
+-+- ..+..+...+-..+.+...+..|-++|..|.. ...++......++|.+|..+-+..-+ ..|
T Consensus 737 dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe--~~~ 804 (1081)
T KOG1538|consen 737 DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE--FKD 804 (1081)
T ss_pred HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc--ccc
Confidence 1111 23445555555566677788899999998865 23567778888999999988776544 234
Q ss_pred CHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 324 SSK-----------SYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 324 ~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
|+. -|.-.-.+|-++|+-.+|.++++++...
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 432 2344556888999999999999988765
No 233
>PRK15331 chaperone protein SicA; Provisional
Probab=94.21 E-value=0.61 Score=37.59 Aligned_cols=86 Identities=10% Similarity=-0.054 Sum_probs=48.7
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET 344 (417)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 344 (417)
-..|++++|..+|.-+.. .+. -+..-|..|-.++-..+++++|...|...-..+.. |...+-..-.+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~-~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCI-YDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHH-hCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 356667777777666654 222 23334455555555566666666666655544322 333344455666666666666
Q ss_pred HHHHHHHHH
Q 014860 345 VKNLWEMIE 353 (417)
Q Consensus 345 ~~~~~~m~~ 353 (417)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666655
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.01 E-value=0.72 Score=40.88 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC--CCCCCCCCHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS--RNLECRPSIRSY 214 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~g~~p~~~~~ 214 (417)
..++..++..+...|+++.+...++.+....+ -+...|..+|.+|.+.|+...|+..|+.+.+. .++|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45667788888999999999999999999876 68899999999999999999999999999872 356899998888
Q ss_pred HHHHHHHH
Q 014860 215 NILFTAFL 222 (417)
Q Consensus 215 ~~li~~~~ 222 (417)
........
T Consensus 231 ~~y~~~~~ 238 (280)
T COG3629 231 ALYEEILR 238 (280)
T ss_pred HHHHHHhc
Confidence 87777733
No 235
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.92 E-value=2.7 Score=33.74 Aligned_cols=83 Identities=7% Similarity=0.026 Sum_probs=55.8
Q ss_pred HHHHHHHHHHH---HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860 137 ASTYHIMTRKL---GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS 213 (417)
Q Consensus 137 ~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~ 213 (417)
....+.||..+ .+.++.++++.+++.+.-..+..+...++..++ +.+.|++++|+++|+++.+. .|....
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~-----~~~~p~ 79 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER-----APGFPY 79 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc-----CCCChH
Confidence 34444555443 467799999999999987765435555555554 47889999999999998876 344444
Q ss_pred HHHHHHHHHhcCC
Q 014860 214 YNILFTAFLSRGK 226 (417)
Q Consensus 214 ~~~li~~~~~~g~ 226 (417)
-..|+..|.....
T Consensus 80 ~kALlA~CL~~~~ 92 (160)
T PF09613_consen 80 AKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHHHcC
Confidence 4556665555444
No 236
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.80 E-value=2.8 Score=33.67 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=60.8
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN-GEVE 342 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~ 342 (417)
-.+.++.++++.+++.+....--.+...++...+ +...|++.+|..+|+++.+.+ |....-.+|+..|... |+.+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChH
Confidence 3456788888888888865322223344444444 677889999999999987653 3333344444444332 3222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMK 381 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 381 (417)
=..+-+++.+.+-.|+. ..++..+....+...|..
T Consensus 96 -Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 -WRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred -HHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 12223445555433332 335555555555554444
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=4 Score=35.19 Aligned_cols=209 Identities=14% Similarity=0.115 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
...|.....+|-...++++|...+....+-.. .+. ..+..+..++.|.-+.++|.+. .--+..|+-
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yE--nnr-------slfhAAKayEqaamLake~~kl-----sEvvdl~eK 96 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNR-------SLFHAAKAYEQAAMLAKELSKL-----SEVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcc-------cHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHH
Confidence 44555666667777777777776555543221 222 2223344566677777777653 112344666
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CCCCCCHHH
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV----YNYLPNSFS 292 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~ 292 (417)
-...|...|. .+.|-..++..-+ .....+.++|++++++-... .....-...
T Consensus 97 As~lY~E~Gs--------pdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el 152 (308)
T KOG1585|consen 97 ASELYVECGS--------PDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHhCC--------cchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 7777777777 4444444333221 01122344444444433210 011122233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRK----GFVPSS-KSYNSLVSALALNGEVEETVKNLWEMIEK---QRPVDFITYR 364 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~ 364 (417)
+..+-..+.+..++++|-..+.+-... .--++. ..|.+.|-.|....++..|.+.++.-..- .-.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 445555677878887776655543211 111222 34666666777778888999988874443 2233566788
Q ss_pred HHHHHHHHcCCHhHHHHHHH
Q 014860 365 TVLDEICRRGRAGEAMKLLK 384 (417)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~ 384 (417)
.|+.+|- .|+.+++..++.
T Consensus 233 nLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHhc-cCCHHHHHHHHc
Confidence 8888874 567766655543
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=2.6 Score=42.63 Aligned_cols=180 Identities=11% Similarity=0.123 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH----HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII----YFFAEARKLSRAVYVFKYMKNSRNLECRPSI 211 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~ 211 (417)
.......-|..+.+...++-|..+...- + .+..+...+. ..+.+.|++++|...|-+-... +.|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~----le~s- 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ---H---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF----LEPS- 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc---C---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc----CChH-
Confidence 3445556677777777888777765442 1 2333333333 4445678888888888777653 3332
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
.+|.-|..... +.....+++.+.+.|+ .+...-..|+.+|.+.++.+.-.++.+...+ .-..-|
T Consensus 402 ----~Vi~kfLdaq~--------IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd-- 465 (933)
T KOG2114|consen 402 ----EVIKKFLDAQR--------IKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFD-- 465 (933)
T ss_pred ----HHHHHhcCHHH--------HHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeee--
Confidence 35556666665 7777778888888885 4666667888889998888888777776652 111112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEM 351 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (417)
....+..+.+.+-.++|..+-..-.. +......++. ..|++++|++++..|
T Consensus 466 -~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 466 -VETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred -HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 33456666666666766665544332 3333343333 556777777776653
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.66 E-value=2.6 Score=32.58 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV 345 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 345 (417)
-.|.+++..++..+.... .+..-+|.+|--....-+-+-..+.++.+-+ .-|.. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 457777778888777663 5666677777666665555555555555443 22222 223333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Q 014860 346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF 408 (417)
Q Consensus 346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~ 408 (417)
..+-.+- .+.......+..+...|.-+...+++.++.+.+-+++.....+-.+|.+-+
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg 134 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLG 134 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhc
Confidence 3332211 134456677788899999999999999998776678888888888887663
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.63 E-value=3.5 Score=34.12 Aligned_cols=99 Identities=9% Similarity=0.113 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC--HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH---
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS--IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--- 247 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--- 247 (417)
...+..+...|++.|+.+.|.+.|.++.+. ...+. ...+-.+|+.....++ +..+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d--------~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGD--------WSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHh
Confidence 356778889999999999999999998875 33332 4457778888888888 7777777666553
Q ss_pred CCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhh
Q 014860 248 DGIEPDIFSLNSMIKG--YILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 248 ~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~ 282 (417)
.|-.++...--.+..+ +...+++..|-+.|-+...
T Consensus 105 ~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 105 KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 2212221111111111 2345677777777766644
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=5.4 Score=36.11 Aligned_cols=158 Identities=7% Similarity=-0.102 Sum_probs=97.0
Q ss_pred HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+...|++.+|-..++++.+.-+ .|...++..=++|.-.|+.+.-...++++...-+.+++-....-....-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4456777888788888877654 56777777777888888888888888877654222222222222233334456676
Q ss_pred ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC--CCHHHHHHHHHHHHhcC
Q 014860 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL--PNSFSYDYLIHGLCAQG 304 (417)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g 304 (417)
+++|++.-++..+.+ +-|.-.-.++...+-..|++.++.++..+-....... .-..-|=...-.+...+
T Consensus 191 --------y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a 261 (491)
T KOG2610|consen 191 --------YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA 261 (491)
T ss_pred --------chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc
Confidence 888887777776654 4566666677777777888888888776655422100 01111112222344457
Q ss_pred CHHHHHHHHHH
Q 014860 305 RTKNARELCDE 315 (417)
Q Consensus 305 ~~~~A~~l~~~ 315 (417)
.++.|+++|++
T Consensus 262 eye~aleIyD~ 272 (491)
T KOG2610|consen 262 EYEKALEIYDR 272 (491)
T ss_pred chhHHHHHHHH
Confidence 78888888864
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=5 Score=35.63 Aligned_cols=143 Identities=12% Similarity=0.073 Sum_probs=75.9
Q ss_pred HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860 146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG 225 (417)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g 225 (417)
.....|++.+|..+|........ .+...--.++.+|...|+.+.|..++..+.... -.........-|..+.+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHHh
Confidence 44567777777777777776654 234555667777778888888888887776541 0111111112233333333
Q ss_pred CccchhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860 226 KNTYINHVYMETIRCLFKQMVNDGIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG 304 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 304 (417)
. ..+...+-.+.-. .| |...--.+-..+...|+.+.|.+.+-.+.++..---|...-..|+..+.-.|
T Consensus 218 ~--------~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 A--------TPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred c--------CCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3 2223333333332 24 4445555666667777777766655444332222233444455555555444
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.57 E-value=7.2 Score=37.36 Aligned_cols=78 Identities=8% Similarity=0.107 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-CCCHHH
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY-LPNSFS 292 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 292 (417)
..+-.++-+.|+ .++|.+.|++|.+.... -...+...|++++...+.+.++..++.+..+ ... +--..+
T Consensus 263 rRLAmCarklGr--------~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSAti~ 333 (539)
T PF04184_consen 263 RRLAMCARKLGR--------LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSATIC 333 (539)
T ss_pred HHHHHHHHHhCC--------hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchHHHH
Confidence 345566667888 89999999998765322 2344667789999999999999999988754 222 123455
Q ss_pred HHHHHHHHH
Q 014860 293 YDYLIHGLC 301 (417)
Q Consensus 293 ~~~li~~~~ 301 (417)
|+..+-.+.
T Consensus 334 YTaALLkaR 342 (539)
T PF04184_consen 334 YTAALLKAR 342 (539)
T ss_pred HHHHHHHHH
Confidence 666554333
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.56 E-value=5.3 Score=35.83 Aligned_cols=225 Identities=10% Similarity=0.099 Sum_probs=128.4
Q ss_pred hccCChhHHHHHHHHhhcCC-CCCCCHH------HHHHHHHHHHccC-ChhHHHHHHHHHHcC----C---CCCCC----
Q 014860 112 TLQEDPLVCLELFNWASKQP-RFRHDAS------TYHIMTRKLGAAK-MYQEMDDVVNQMLAT----P---SFCGT---- 172 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~------~~~~li~~~~~~~-~~~~a~~~~~~m~~~----~---~~~~~---- 172 (417)
.++|+.+.|..++.++.... ...|+.. .|+.-...+ ..+ ++++|...+++..+. + ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999885433 2223221 122222233 455 888887777666553 1 11133
Q ss_pred -HHHHHHHHHHHHHhCCHH---HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 173 -EALYNTIIYFFAEARKLS---RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 173 -~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
..+...++.+|...+..+ +|.++++.+... ..-....+-.-+..+.+.++ .+.+.+++.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e----~~~~~~~~~L~l~il~~~~~--------~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE----YGNKPEVFLLKLEILLKSFD--------EEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHhccCC--------hhHHHHHHHHHHHh
Confidence 346777888888887754 567777777664 12224556667777777888 89999999999976
Q ss_pred CCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHhhhhCCCCCCHHHH--HHHHHH---HHhcC------CHHHHHHHHH
Q 014860 249 GIEPDIFSLNSMIKGY---ILSNHVNDALRIFHQMGVVYNYLPNSFSY--DYLIHG---LCAQG------RTKNARELCD 314 (417)
Q Consensus 249 g~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~li~~---~~~~g------~~~~A~~l~~ 314 (417)
- ......+..++..+ .... ...|...++.+.. ..+.|....| ..++.. ..+.+ +.+...++++
T Consensus 151 ~-~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~ 227 (278)
T PF08631_consen 151 V-DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLL-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS 227 (278)
T ss_pred c-ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH
Confidence 3 22445566665555 3333 3455566655544 3334443211 111111 11211 1455555666
Q ss_pred HHHHC-CCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHH
Q 014860 315 EMKRK-GFVPSSKSYNSLV-------SALALNGEVEETVKNLWEMI 352 (417)
Q Consensus 315 ~m~~~-g~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~ 352 (417)
...+. +.+.+..+-.++. ..+.+.+++++|.++|+-..
T Consensus 228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44432 3444555543333 33556789999999987543
No 245
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.51 E-value=6.2 Score=36.49 Aligned_cols=252 Identities=13% Similarity=0.048 Sum_probs=159.4
Q ss_pred hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH----HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 112 TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKL----GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
.-.|+++.|.+-|+.|.. |+++-..=++++ -+.|+.+.|.+.-+..-..-. .-...+.+.+...+..|
T Consensus 131 l~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAG 202 (531)
T ss_pred HhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcC
Confidence 467999999999999963 455544444443 378899999888887766543 34578889999999999
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHH--HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRS--YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFS-LNSMIKGY 264 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~ 264 (417)
+++.|+++.+.-+... -+.++..- -..|+.+-....-+.. ...|...-.+.. .+.||..- --.--.++
T Consensus 203 dWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~ldad-----p~~Ar~~A~~a~--KL~pdlvPaav~AAral 273 (531)
T COG3898 203 DWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSLLDAD-----PASARDDALEAN--KLAPDLVPAAVVAARAL 273 (531)
T ss_pred ChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHh--hcCCccchHHHHHHHHH
Confidence 9999999999887763 34444322 2233333222111000 344444333333 34566432 23345678
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 014860 265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVP-SSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~ 342 (417)
.+.|+..++-.+++.+=+ . .|....+ .+..+.+.|+. +.+=+++.... .++| |..+--.+..+-...|++.
T Consensus 274 f~d~~~rKg~~ilE~aWK-~--ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 274 FRDGNLRKGSKILETAWK-A--EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HhccchhhhhhHHHHHHh-c--CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 899999999999998855 2 3433332 33334555653 22222222211 1333 4566777788888899998
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHHC
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEIC-RRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 389 (417)
.|..--+.... ..|....|..|.+.-. ..|+-.++.+.+.+-.+.
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88776555544 4678888877777544 448988988888877664
No 246
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.41 E-value=5.4 Score=35.44 Aligned_cols=62 Identities=6% Similarity=-0.005 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860 285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNSLVSALALNGEVEETVK 346 (417)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 346 (417)
+-.++..+...+|..++..+++.+-.++++..... +..-|...|..+|+.-.+.|+..-..+
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 33444444555555555555555555554444333 333344445555555555555444333
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.33 E-value=1.3 Score=39.32 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE-----KQRPVDFITYRTVL 367 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li 367 (417)
+..++..+...|+.+.+...++++.... +-|...|..++.+|.+.|+...|...|+.+.. .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444444444444444444444432 12444455555555555555555444444433 15555554444443
Q ss_pred HH
Q 014860 368 DE 369 (417)
Q Consensus 368 ~~ 369 (417)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=93.15 E-value=1.1 Score=36.15 Aligned_cols=88 Identities=8% Similarity=-0.030 Sum_probs=68.8
Q ss_pred HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860 146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG 225 (417)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g 225 (417)
-+-..|++++|..+|.-+...+. -+..-|..|..++-..+++++|+..|...-... .-|...+-..-.++...|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL----KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCCccchHHHHHHHhC
Confidence 34578999999999998888766 566677888888888899999999988776542 234445667778888889
Q ss_pred CccchhhhhHHHHHHHHHHHHH
Q 014860 226 KNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
+ .+.|...|....+
T Consensus 120 ~--------~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 K--------AAKARQCFELVNE 133 (165)
T ss_pred C--------HHHHHHHHHHHHh
Confidence 8 8999988888776
No 249
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=4.1 Score=33.17 Aligned_cols=139 Identities=11% Similarity=0.057 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH-HH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR-SY 214 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~-~~ 214 (417)
+...|...++ +++.+..++|..-|..+.+.|...--...---+.....+.|+...|+..|+++-.. .-.|-.. -.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ 133 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDL 133 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHH
Confidence 4445554443 34667778888888888877653111222223334566778888888888888765 2222221 11
Q ss_pred HHHHH--HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 014860 215 NILFT--AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY 286 (417)
Q Consensus 215 ~~li~--~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 286 (417)
.-|=. .+...|. ++.+..-.+.+-..+.+.-...-.+|--+-.+.|++.+|...|..+..+.+.
T Consensus 134 ARlraa~lLvD~gs--------y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 134 ARLRAAYLLVDNGS--------YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHHHHhcccc--------HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 11222 2455666 7777777666665554444455566767777888888888888888764333
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=6.9 Score=35.45 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=106.8
Q ss_pred HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC---CCCCCHHHHHHHH
Q 014860 185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND---GIEPDIFSLNSMI 261 (417)
Q Consensus 185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li 261 (417)
..|+..+|...++++.+ ..+.|..+++..-.+|.-.|+ .+.-...+++.... +++-..++-..+-
T Consensus 115 ~~g~~h~a~~~wdklL~----d~PtDlla~kfsh~a~fy~G~--------~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD----DYPTDLLAVKFSHDAHFYNGN--------QIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred ccccccHHHHHHHHHHH----hCchhhhhhhhhhhHHHhccc--------hhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 45777778788888887 467789999999999999999 77777788877643 2222334445555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc
Q 014860 262 KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK---GFVPSSKSYNSLVSALALN 338 (417)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~li~~~~~~ 338 (417)
-++..+|-+++|++.-++..+. + +.|.-.-.+....+-..|+..++.++..+-... +.-.-..-|-...-.+...
T Consensus 183 FgL~E~g~y~dAEk~A~ralqi-N-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQI-N-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred hhHHHhccchhHHHHHHhhccC-C-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 6667899999999999887651 1 245556667777888899999999887664432 1111112233334455667
Q ss_pred CCHHHHHHHHHHH
Q 014860 339 GEVEETVKNLWEM 351 (417)
Q Consensus 339 g~~~~A~~~~~~m 351 (417)
+.++.|+++|+.=
T Consensus 261 aeye~aleIyD~e 273 (491)
T KOG2610|consen 261 AEYEKALEIYDRE 273 (491)
T ss_pred cchhHHHHHHHHH
Confidence 8999999999753
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.95 E-value=5.6 Score=37.52 Aligned_cols=134 Identities=12% Similarity=0.107 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 235 METIRCLFKQMVNDGIEPD------IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN 308 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 308 (417)
..++.++|.+..+.. .-+ ....+-+|++|... +.+.....+....+..|-.+-...|.++. +-+.+.+.+
T Consensus 22 ~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~k 97 (549)
T PF07079_consen 22 FQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRK 97 (549)
T ss_pred hhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHH
Confidence 889999998887543 222 23345677777654 57777777777776544333333333322 346788899
Q ss_pred HHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHH
Q 014860 309 ARELCDEMKRK--GFVP------------SSKSYNSLVSALALNGEVEETVKNLWEMIEKQ----RPVDFITYRTVLDEI 370 (417)
Q Consensus 309 A~~l~~~m~~~--g~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~ 370 (417)
|.+.+....+. +..| |...=+..+.++.+.|++.++..++++|...= ...+..+|+.++-.+
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 98888776654 3222 22223777888899999999999999988763 347888898866655
Q ss_pred HH
Q 014860 371 CR 372 (417)
Q Consensus 371 ~~ 372 (417)
++
T Consensus 178 sr 179 (549)
T PF07079_consen 178 SR 179 (549)
T ss_pred hH
Confidence 44
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.72 E-value=1.7 Score=34.16 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 302 AQGRTKNARELCDEMKRKG--FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+.|++++|.+.|+.+...= -.-....--.|+.+|.+.|++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445555555555554430 0112233344445555555555555555554443
No 253
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.65 E-value=7 Score=34.73 Aligned_cols=149 Identities=10% Similarity=0.100 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-CCCCCCH
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-DGIEPDI 254 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~ 254 (417)
|..|+. +...+.+|+++|+...... .+--|..+...+++......+. . ...--++.+.+.. .|-.++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~--~Ii~d~evislLL~sMv~~~~~-~-----l~alYEvV~~l~~t~~~~l~~ 202 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDE--SIIFDEEVISLLLKSMVIDENT-K-----LNALYEVVDFLVSTFSKSLTR 202 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCccc--ceeeChHHHHHHHHHHHhcccc-c-----hhhHHHHHHHHHhccccCCCh
Confidence 555554 4455678888888433210 3566788888888888873331 0 3333334444443 3457889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHHHHH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDE-----MKRKGFVPSSKSYN 329 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~~~~ 329 (417)
.+...+|..++..++|..-.++++......+...|...|..+|......|+..-...+.++ +++.|+..+...-.
T Consensus 203 ~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~ 282 (292)
T PF13929_consen 203 NVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRS 282 (292)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHH
Confidence 9999999999999999999999998876446677899999999999999999888777765 33445666665555
Q ss_pred HHHHHH
Q 014860 330 SLVSAL 335 (417)
Q Consensus 330 ~li~~~ 335 (417)
.+-+.+
T Consensus 283 ~L~~LF 288 (292)
T PF13929_consen 283 QLSELF 288 (292)
T ss_pred HHHHHH
Confidence 544443
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.58 E-value=16 Score=38.80 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860 251 EPDIFSLNSMIKGYI----LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326 (417)
Q Consensus 251 ~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 326 (417)
.|+...+..+..+|+ ..+.+++|.-.|+...+ ..-.+.+|..+|+|.+|+.+-..|.... |..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGK---DEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHH
Confidence 345444444433332 34555555555554433 1123555556666666666555544221 111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 327 --SYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 327 --~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+-..|+.-+...++.-+|-++..+...
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 124455555556666555555555443
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=6.9 Score=39.79 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=110.3
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----ccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG----AAKMYQEMDDVVNQMLATPSFCGTEALYN 177 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 177 (417)
.+...-+..+.+..-++.|+.+-+.- ..|..+...+...|+ +.|++++|.+.+-+-... ..| .
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s 401 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----S 401 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----H
Confidence 34556677777777788888776432 245566666665554 899999998887766443 212 2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL 257 (417)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 257 (417)
.+|.-|..+.++.+-..+++.+.+. |+. +...-+.|+.+|.+.++ .++..+..+.-. .|.. ..-.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~---gla-~~dhttlLLncYiKlkd--------~~kL~efI~~~~-~g~~--~fd~ 466 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKK---GLA-NSDHTTLLLNCYIKLKD--------VEKLTEFISKCD-KGEW--FFDV 466 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHc---ccc-cchhHHHHHHHHHHhcc--------hHHHHHHHhcCC-Ccce--eeeH
Confidence 4667777788888888888888887 443 44555789999999999 666655544332 2211 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEM 316 (417)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 316 (417)
...+..+.+.+-.++|..+-..... .......+ +-..+++++|.+.+..|
T Consensus 467 e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 467 ETALEILRKSNYLDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4556666666666666666554432 22222232 33456677776666543
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.39 E-value=11 Score=36.24 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 014860 258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALA 336 (417)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~ 336 (417)
.-+-.++.+.|+.++|.+.+.+|.+.....-+......||+++...+.+.++..++.+-.+...+.+ ...|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4456666788999999999999976443333455778899999999999999999999765432222 345666554433
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.35 E-value=4 Score=31.53 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=28.8
Q ss_pred HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
+++..|+++.|.+.|.+.+..-+ .....||.-..++.-.|+.++|+.=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555554432 3445555555555555555555555555544
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=92.14 E-value=11 Score=35.87 Aligned_cols=160 Identities=8% Similarity=0.096 Sum_probs=99.8
Q ss_pred HHHHHHHhc-----cCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHH---------ccCChhHHHHHHHHHHcCCCC
Q 014860 105 EELCNVMTL-----QEDPLVCLELFNWASKQPRFRHD-ASTYHIMTRKLG---------AAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 105 ~~ll~~l~~-----~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~ 169 (417)
...+++... ....+.|+.+|..........|+ ...|..+...+. ......+|.++.+...+.+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~- 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT- 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-
Confidence 555555533 22466788889888633333443 444444333221 23345567777777777776
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
.|......+..+..-.++++.|...|++...- .|| ..+|...--.+.-.|+ .++|.+.+++..+.
T Consensus 336 -~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-----~Pn~A~~~~~~~~~~~~~G~--------~~~a~~~i~~alrL 401 (458)
T PRK11906 336 -VDGKILAIMGLITGLSGQAKVSHILFEQAKIH-----STDIASLYYYRALVHFHNEK--------IEEARICIDKSLQL 401 (458)
T ss_pred -CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-----CCccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhcc
Confidence 67777777777778888899999999998864 554 4556555556667888 88998888886554
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860 249 G-IEPDIFSLNSMIKGYILSNHVNDALRIFHQM 280 (417)
Q Consensus 249 g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (417)
. .+.-.......|+.|+..+ ++.|.+++-+-
T Consensus 402 sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 2 1222334444555666554 56677766543
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.13 E-value=4.5 Score=31.27 Aligned_cols=90 Identities=17% Similarity=0.071 Sum_probs=68.4
Q ss_pred HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
-+.+..|+++.|++.|.+...- .+-....||.-..++.-.|+ .++|++-+++..+..-.-+...+.+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq~~--------~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL----APERASAYNNRAQALRLQGD--------DEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh----cccchHhhccHHHHHHHcCC--------hHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4567889999999999998864 34567889999999999999 99999888887764323344444443
Q ss_pred H---HHHHhcCCHHHHHHHHHHhhh
Q 014860 261 I---KGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 261 i---~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+ ..|...|+-+.|..-|+...+
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHH
Confidence 3 456778888888888887766
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=7.7 Score=36.04 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=89.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhC----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 262 KGYILSNHVNDALRIFHQMGVVY----NYL---------PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328 (417)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~~~~----~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 328 (417)
+.|.+.|++..|..-|+....-. +.. .-..+++.+..+|.+.+++.+|++.-+.....+ ++|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 35778888888888877753311 111 234567888889999999999999999988775 3477777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCC-HhHHHHHHHHHHHC
Q 014860 329 NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRT-VLDEICRRGR-AGEAMKLLKELQNK 389 (417)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~-~~~A~~~~~~m~~~ 389 (417)
--=-.+|...|+++.|...|+++.+. .|+...-.. |+..--+... .+...++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77778999999999999999999985 666555544 4443333333 33457788888654
No 261
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.01 E-value=2.1 Score=39.64 Aligned_cols=262 Identities=11% Similarity=0.038 Sum_probs=138.1
Q ss_pred HHHHHHHHH--HHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHh--HhCCCCCCC
Q 014860 137 ASTYHIMTR--KLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKLSRAVYVFKYM--KNSRNLECR 208 (417)
Q Consensus 137 ~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~~~~g~~ 208 (417)
...+...+. -+++.|+......+|+..++.|. .| ..+|..|-.+|.-.+++++|+++-..= ..+. .|-+
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-lgdk 91 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-LGDK 91 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-hcch
Confidence 334444443 47899999999999999999876 33 345777778888888999998854311 0000 0000
Q ss_pred -CCHHHHHHHHHHHHhcCCccch---hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------------
Q 014860 209 -PSIRSYNILFTAFLSRGKNTYI---NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH--------------- 269 (417)
Q Consensus 209 -p~~~~~~~li~~~~~~g~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------- 269 (417)
-...+...|-..+--.|..+.+ -...++-|.++=++..+ ...+-.+-..|...|+
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 0111111122222222220000 00003333333333322 2233334444443332
Q ss_pred -----HHHHHHHHHHhhh---hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHH
Q 014860 270 -----VNDALRIFHQMGV---VYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMK----RKGFVP-SSKSYNSLVSAL 335 (417)
Q Consensus 270 -----~~~a~~~~~~m~~---~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~~~~~li~~~ 335 (417)
++.|.++|.+-.+ +.| -..-...|..|-+.|.-.|+++.|+...+.-. +-|-+. ....+..+-.++
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 3344444432211 111 01122345566666667788998877654322 223222 235677788889
Q ss_pred HhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC------CCChhhHHHHHHHH
Q 014860 336 ALNGEVEETVKNLWEMIEK----Q-RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN------LIDGYTYTKLLDVL 404 (417)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~p~~~t~~~ll~~~ 404 (417)
.-.|+++.|.+.|+.-... | ..........|-+.|.-..++++|..++.+-..-. +-....|.+|-.++
T Consensus 246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999988875432 2 12233455667788888888888888876543211 11444555555555
Q ss_pred Hhh
Q 014860 405 EDD 407 (417)
Q Consensus 405 ~~~ 407 (417)
..-
T Consensus 326 ~al 328 (639)
T KOG1130|consen 326 NAL 328 (639)
T ss_pred Hhh
Confidence 433
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.98 E-value=13 Score=36.24 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=92.3
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCC-----HHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGT-----EALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
...+=.|+-+.+.+.+....+.+..... ...|+.++..++. ....+.|.++++.+.++ .|+...|.
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-----yP~s~lfl 270 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-----YPNSALFL 270 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-----CCCcHHHH
Confidence 3445667888888888777665443111 1234444444433 34577788888888876 67766665
Q ss_pred HHHH-HHHhcCCccchhhhhHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 216 ILFT-AFLSRGKNTYINHVYMETIRCLFKQMVNDGI---EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 216 ~li~-~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
..-. .+...|+ .++|++.|++...... +.....+--+.-.+.-.++|++|.+.|..+.+.... +..
T Consensus 271 ~~~gR~~~~~g~--------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska 340 (468)
T PF10300_consen 271 FFEGRLERLKGN--------LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKA 340 (468)
T ss_pred HHHHHHHHHhcC--------HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHH
Confidence 5443 3445666 8888888886553111 122233344555667778888888888888763322 233
Q ss_pred HHHHHHHH-HHhcCCH-------HHHHHHHHHHH
Q 014860 292 SYDYLIHG-LCAQGRT-------KNARELCDEMK 317 (417)
Q Consensus 292 ~~~~li~~-~~~~g~~-------~~A~~l~~~m~ 317 (417)
+|..+..+ +...|+. ++|.++|.+..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33333332 2345555 67777777654
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.66 E-value=0.68 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 363 YRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
+..+..+|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555555444
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.51 E-value=6.6 Score=31.98 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=86.2
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CH
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN--HV 270 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~ 270 (417)
.+.++.+.+. +++|+...|..+|..+.+.|+ .. .+.++...++-+|.......+-.+.... -.
T Consensus 14 lEYirSl~~~---~i~~~~~L~~lli~lLi~~~~--------~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~ 78 (167)
T PF07035_consen 14 LEYIRSLNQH---NIPVQHELYELLIDLLIRNGQ--------FS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAY 78 (167)
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCC--------HH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHH
Confidence 3445555555 789999999999999999998 44 4466677777788777666554443322 13
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWE 350 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (417)
..|.+++.++.. .+..+++.+...|++-+|.++.+..... +......++.+-.+.++...-..+|+-
T Consensus 79 Ql~lDMLkRL~~---------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 79 QLGLDMLKRLGT---------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred HHHHHHHHHhhh---------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555543 3667888899999999999998875332 111234456666666665554444444
Q ss_pred HHH
Q 014860 351 MIE 353 (417)
Q Consensus 351 m~~ 353 (417)
..+
T Consensus 146 f~~ 148 (167)
T PF07035_consen 146 FEE 148 (167)
T ss_pred HHH
Confidence 444
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.47 E-value=5.8 Score=31.25 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHH
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLD 402 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~ 402 (417)
..|..- ....+.|++++|.+.|+.+... .-+......-.|+.+|.+.|++++|...+++.++.+. -...-|...+.
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344443 3445779999999999999987 2233445667789999999999999999999999887 24455666666
Q ss_pred HHH
Q 014860 403 VLE 405 (417)
Q Consensus 403 ~~~ 405 (417)
+|+
T Consensus 91 gL~ 93 (142)
T PF13512_consen 91 GLS 93 (142)
T ss_pred HHH
Confidence 655
No 266
>PRK09687 putative lyase; Provisional
Probab=91.40 E-value=10 Score=34.00 Aligned_cols=240 Identities=13% Similarity=0.055 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH----HHHHHHHHHhHhCCCCCCCCC
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL----SRAVYVFKYMKNSRNLECRPS 210 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~g~~p~ 210 (417)
+|.......+.++...|.. ++...+..+... +|...-...+.++++.|+. +++...+..+... .++
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-----D~d 104 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-----DKS 104 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-----CCC
Confidence 4666666677777777653 333334444433 5667777778888888873 4677778777433 456
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860 211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS 290 (417)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 290 (417)
...-...+.++...+..... ....+.+.+..... .++..+--..+.++++.++. .+...+-.+.+ .+|.
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~---~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~----d~~~ 173 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPL---YSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK----DPNG 173 (280)
T ss_pred HHHHHHHHHHHhcccccccc---cchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc----CCCH
Confidence 66666667777665531100 01233444433333 34666777788888888874 55555555554 2666
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQG-RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE 369 (417)
Q Consensus 291 ~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 369 (417)
..-...+.++++.+ ....+...+..+.. .+|..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.+
T Consensus 174 ~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~A 244 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEA 244 (280)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHH
Confidence 67777777777764 24456666666664 3467777778888888888 45666666666653 2 23567888
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860 370 ICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
+...|.. +|...+..+.+.. +|...-...+.+|.+
T Consensus 245 Lg~ig~~-~a~p~L~~l~~~~-~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 245 AGELGDK-TLLPVLDTLLYKF-DDNEIITKAIDKLKR 279 (280)
T ss_pred HHhcCCH-hHHHHHHHHHhhC-CChhHHHHHHHHHhc
Confidence 9999985 7888888888743 377777777777754
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.19 E-value=6 Score=32.72 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEK---QRPVDFITYRT 365 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ 365 (417)
..+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|+.....|++..+.....+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455566666666666666666666665533332 334555666666667776666666555443 22222222111
Q ss_pred HHH--HHHHcCCHhHHHHHHHHHH
Q 014860 366 VLD--EICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 366 li~--~~~~~g~~~~A~~~~~~m~ 387 (417)
... .+...+++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 2345678888887776654
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.18 E-value=6.4 Score=34.53 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=79.2
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHH
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQP-RFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTII 180 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li 180 (417)
.|+.-+..+ ..|++..|...|....+.. +-.-....+--|...+...|++++|..+|..+.+..+..|. ....-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 366666655 4566999999999886543 11234455556889999999999999999999887554333 46777888
Q ss_pred HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIR 212 (417)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~ 212 (417)
....+.|+.++|..+|++..++ .|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~-----YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR-----YPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH-----CCCCH
Confidence 8899999999999999999987 56544
No 269
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=2.9 Score=37.33 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 014860 285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG---FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI 361 (417)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 361 (417)
|......+...++..-....+++.++..+-.++... ..|+... .+.++.|. .-+.++++.++..=+..|+-||-.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444555566666666666677777777777666431 1222211 12223222 235567777777777778888888
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 362 TYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
++..+|+.+.+.+++.+|.++...|..+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 888888888888888888888777776654
No 270
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.99 E-value=2 Score=31.11 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH 298 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 298 (417)
.-++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+..+.+.|. +...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 4556666677777778888888888888888888888888888887753332 3445666553
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.87 E-value=0.78 Score=27.79 Aligned_cols=26 Identities=4% Similarity=0.037 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
+..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555544444
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.78 E-value=24 Score=37.66 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCCHHHHHHHH----HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 014860 208 RPSIRSYNILF----TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV 283 (417)
Q Consensus 208 ~p~~~~~~~li----~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (417)
.|+...+..+. ..+..... +++|.-.|+..-+ ..--+.+|..+|+|++|+.+..++...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~--------~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~ 994 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELM--------SDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG 994 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhcc--------ccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence 34544444444 44445565 6777666654332 234577888899999999999888651
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 284 YNYLPNSFS--YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352 (417)
Q Consensus 284 ~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 352 (417)
.+... --.|+.-+...++.-+|-++..+-.+. ..-.+..||+...+++|.++-..-.
T Consensus 995 ----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 995 ----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 23222 256777788888888888888877653 2233455666677888777655433
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=10 Score=32.83 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=96.8
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH--HHHHHHHHHHHhcCCc
Q 014860 150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI--RSYNILFTAFLSRGKN 227 (417)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~--~~~~~li~~~~~~g~~ 227 (417)
...++.|.-+..++.+.. --+..|+....+|.++|..+.|-..++..-+.-. ++.|+. ..|.--+...-..++
T Consensus 71 AKayEqaamLake~~kls---Evvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr- 145 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLS---EVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDR- 145 (308)
T ss_pred HHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccch-
Confidence 344555666666666543 2346788888999999999888877776554210 233332 123322222222222
Q ss_pred cchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCCC-HHHHHHHHHHHHhc
Q 014860 228 TYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNYLPN-SFSYDYLIHGLCAQ 303 (417)
Q Consensus 228 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~-~~~~~~li~~~~~~ 303 (417)
...|.+ .+..+-..+.+..++++|-..|..-..- ..--++ -..|-..|-.+...
T Consensus 146 -------~~ma~e---------------l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~ 203 (308)
T KOG1585|consen 146 -------DQMAFE---------------LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA 203 (308)
T ss_pred -------HHHHHH---------------HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence 222222 2333445566666777665554433210 011122 23456666677778
Q ss_pred CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 304 GRTKNARELCDEMKRKG---FVPSSKSYNSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 304 g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~ 348 (417)
.++..|+..+++--+.+ -.-+..+...||.+| ..|+.+++.+++
T Consensus 204 ~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 204 HDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 89999999999855432 223567888888887 457777765554
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.59 E-value=2.4 Score=30.70 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
+.=++.+-++.+...+.+ |++.+..+.+++|-+.+++..|+++|+-.+.+
T Consensus 22 D~we~rr~mN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLV-PEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334556666667677777 78888888888888888888888888877753
No 275
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.54 E-value=3 Score=40.59 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=49.4
Q ss_pred HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY 264 (417)
Q Consensus 185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 264 (417)
+.|+++.|.++..+.. +..-|..|-++....++ +..|.+.|....+ |..|+-.+
T Consensus 649 ~lgrl~iA~~la~e~~---------s~~Kw~~Lg~~al~~~~--------l~lA~EC~~~a~d---------~~~LlLl~ 702 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN---------SEVKWRQLGDAALSAGE--------LPLASECFLRARD---------LGSLLLLY 702 (794)
T ss_pred hcCcHHHHHHHHHhhc---------chHHHHHHHHHHhhccc--------chhHHHHHHhhcc---------hhhhhhhh
Confidence 4566666655554443 33456666666666666 6666665554442 33455555
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDE 315 (417)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 315 (417)
...|+-+....+-...++ .|. . |....+|...|+++++.+++.+
T Consensus 703 t~~g~~~~l~~la~~~~~-~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 703 TSSGNAEGLAVLASLAKK-QGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcCChhHHHHHHHHHHh-hcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 555555444444444433 222 1 2223334455666666555543
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.45 E-value=5.5 Score=29.21 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860 236 ETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH 298 (417)
Q Consensus 236 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 298 (417)
-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+.+..-+ .|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 355556666666777888888888888888888888888888888775543333 5666653
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.31 E-value=0.81 Score=26.33 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 014860 328 YNSLVSALALNGEVEETVKNLWE 350 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~ 350 (417)
|+.|-..|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.25 E-value=18 Score=36.17 Aligned_cols=189 Identities=13% Similarity=0.006 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHhHh-------CCCCCCCCCHHHHHHHHHHHHhc
Q 014860 153 YQEMDDVVNQMLATPSFCGTEALYNTIIYF-FAEARKLSRAVYVFKYMKN-------SRNLECRPSIRSYNILFTAFLSR 224 (417)
Q Consensus 153 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~-------~~~~g~~p~~~~~~~li~~~~~~ 224 (417)
...+.+.++...+.+...+-...-.....+ +....+.+.|+..|+.+.+ . | ......-+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~---~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK---G---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh---c---CCccccHHHHHHhcC
Confidence 567888888888886541111122222233 4566889999999999977 3 3 233455666666664
Q ss_pred CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHH--
Q 014860 225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL-SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLC-- 301 (417)
Q Consensus 225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~-- 301 (417)
...... ..+.|+.+|...-+.| .|+....-..+..... ..+...|.++|....+ .|. +...-+.+++....
T Consensus 302 ~~~~~~---d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~-~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKI---DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGH-ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccc---cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCC-hHHHHHHHHHHHhCCC
Confidence 421110 1788999999988888 4565555444433333 3567899999998877 443 33333333332222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 014860 302 AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ 355 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 355 (417)
...+.+.|..++...-+.| .|-..--...+..+.. +..+.+.-.+..+.+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 3346788999998888887 3332222333344444 67777766666666654
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=13 Score=33.15 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=112.3
Q ss_pred ChhHHHHHHhcCCCCCCHHHHHH--HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 014860 87 DDTQFRCAVSELPPRFNNEELCN--VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQML 164 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~~~~~ll~--~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 164 (417)
.++.+.+-+..+-....-..+-. .+...++...|..+|....... +-+...--.+...|...|+++.|..++..+.
T Consensus 118 Pesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 118 PESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred cHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 44556666655544311112222 2367899999999999887655 3456777788899999999999999999987
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860 165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ 244 (417)
Q Consensus 165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~ 244 (417)
..... .......+-|..+.++....+...+-.+.-.. +-|...--.+-..+...|+ .+.|.+.+-.
T Consensus 196 ~~~~~-~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad-----Pdd~~aa~~lA~~~~~~g~--------~e~Ale~Ll~ 261 (304)
T COG3118 196 LQAQD-KAAHGLQAQIELLEQAAATPEIQDLQRRLAAD-----PDDVEAALALADQLHLVGR--------NEAALEHLLA 261 (304)
T ss_pred ccchh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 76433 22233345567777777777777777777664 3377777788888999999 8999887777
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHhcC
Q 014860 245 MVNDGI-EPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 245 m~~~g~-~p~~~~~~~li~~~~~~g 268 (417)
+.+... --|...-..+++.+.--|
T Consensus 262 ~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 262 LLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcccccCcHHHHHHHHHHHhcC
Confidence 664321 234455556666555555
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.10 E-value=0.75 Score=26.47 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhH
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMK 200 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~ 200 (417)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999998844
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.05 E-value=8.2 Score=30.60 Aligned_cols=63 Identities=5% Similarity=0.025 Sum_probs=46.1
Q ss_pred HHHHHHHHHH---HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 138 STYHIMTRKL---GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 138 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
...+.||... ...++.+++..+++.|.-..+..+...++..++ +...|++++|.++|++..+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 3444444433 358899999999999987665445566666555 46889999999999999986
No 282
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=7.1 Score=36.25 Aligned_cols=125 Identities=13% Similarity=0.083 Sum_probs=91.2
Q ss_pred HHHhccCChhHHHHHHHHhhc----CCCCCC---------CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHH
Q 014860 109 NVMTLQEDPLVCLELFNWASK----QPRFRH---------DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEAL 175 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~----~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 175 (417)
..+-+.|++..|..-|+.+.. ..++.+ -..++..+.-.+.+.+.+..|.+..+..+..+. .|...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhH
Confidence 355678889999888877543 222222 223466677778899999999999999999876 67777
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc-CCccchhhhhHHHHHHHHHHHHH
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR-GKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
.--=..+|...|+++.|+..|+.+.+. .|+...-+.=|..|.+. .. +.+...++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~-----~P~Nka~~~el~~l~~k~~~-------~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL-----EPSNKAARAELIKLKQKIRE-------YEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 777788999999999999999999985 67666655555544433 32 24555778888875
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.28 E-value=22 Score=34.36 Aligned_cols=180 Identities=8% Similarity=-0.006 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS 213 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~ 213 (417)
..|......++..++.+-.++-++.+..+|...| .+...+-.++..|... .-++-..+++++.+. .--|++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~----dfnDvv~ 134 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEY----DFNDVVI 134 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh----cchhHHH
Confidence 4677788888888988888888888888888877 5667788888888888 566777888877775 1223333
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-----PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP 288 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 288 (417)
-.-|...|-+ ++ ...+...|......=++ .-...|.-++... ..+.+....+...+..+.|...
T Consensus 135 ~ReLa~~yEk-ik--------~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~ 203 (711)
T COG1747 135 GRELADKYEK-IK--------KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR 203 (711)
T ss_pred HHHHHHHHHH-hc--------hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch
Confidence 3444444444 66 66677777666543221 1123444444321 3467777777777777677777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
-.+.+.-+-.-|....++.+|.+++..+.+..-+ |...-..++.
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 7777777777888888888888888877765422 4433333443
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.28 E-value=18 Score=33.42 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=24.5
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
.++.-+.|+|+..-+...... .. .++...|..+... +.++++++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~-~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSN-ED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhcc-CC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 344455666666444433331 11 1233333333332 56666666665555544
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.02 E-value=4.4 Score=36.28 Aligned_cols=104 Identities=11% Similarity=0.146 Sum_probs=67.5
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860 247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY--NYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
..|......+...++..-....+++++...+-.++... ...+ +.++|-.++ -.-+.++++.++..=.+-|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccc
Confidence 34555666666777766666777888887777775421 1112 223333322 223566777777777777888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 323 PSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 323 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
||..+++.+|+.+.+.+++.+|..+...|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888887777666554
No 286
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.66 E-value=11 Score=29.95 Aligned_cols=93 Identities=11% Similarity=0.183 Sum_probs=45.7
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 014860 245 MVNDGIEPDIF--SLNSMIKGYILSNHVNDALRIFHQMGVVYN----YLPNSFSYDYLIHGLCAQGR-TKNARELCDEMK 317 (417)
Q Consensus 245 m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~ 317 (417)
|.+.+..++.. ..|+++.-....+.+.....+++.+..... -..+...|.+++.+..+..- ---+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444443 346666666666667666666666632100 01233345555555544333 223445555555
Q ss_pred HCCCCCCHHHHHHHHHHHHh
Q 014860 318 RKGFVPSSKSYNSLVSALAL 337 (417)
Q Consensus 318 ~~g~~p~~~~~~~li~~~~~ 337 (417)
+.+.+++..-|..+|.++.+
T Consensus 108 ~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHc
Confidence 54455555555555555444
No 287
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=21 Score=33.41 Aligned_cols=272 Identities=13% Similarity=0.026 Sum_probs=140.3
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
+..++..|+..+..+..-. +.+..-|..-...+...++++++.--.+.-.+... .......-.-+++...++..+|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--CccccccchhhhhhhhHHHHHH
Confidence 4556677777777664322 33455555555556666666666554444443322 1112222233333333333333
Q ss_pred HHHHH------------HhHhCCC-CCCCCCHHHHHHHH-HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 193 VYVFK------------YMKNSRN-LECRPSIRSYNILF-TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 193 ~~~~~------------~m~~~~~-~g~~p~~~~~~~li-~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
.+.|+ .....-. ..-+|...+|-.+= .++...|+ .++|.+.--..++.. ....+.
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~--------~~~a~~ea~~ilkld---~~n~~a 205 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD--------YDEAQSEAIDILKLD---ATNAEA 205 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc--------chhHHHHHHHHHhcc---cchhHH
Confidence 33333 1111100 01123334444332 23445566 666666555544332 122333
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhhhhCCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 014860 259 SMIKGYI--LSNHVNDALRIFHQMGVVYNYLPNSFS-------------YDYLIHGLCAQGRTKNARELCDEMKRK---G 320 (417)
Q Consensus 259 ~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~l~~~m~~~---g 320 (417)
.++.+.+ -.++.+.|...|++-.. +.|+... |..--+-..+.|++.+|.+.|.+.... +
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 3443333 35666777777766543 2233221 111222345778888888888887653 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-H--HHHHHcCCHhHHHHHHHHHHHCCC-C-Chh
Q 014860 321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTV-L--DEICRRGRAGEAMKLLKELQNKNL-I-DGY 395 (417)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i--~~~~~~g~~~~A~~~~~~m~~~~~-p-~~~ 395 (417)
++|+...|........+.|+.++|+.--++..+- |..-...+ . .++...++|++|.+-++...+... + +..
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~ 358 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRR 358 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Confidence 5566777777777777888888888777666653 43322222 2 234456778888888777665544 2 555
Q ss_pred hHHHHHHHHHh
Q 014860 396 TYTKLLDVLED 406 (417)
Q Consensus 396 t~~~ll~~~~~ 406 (417)
++.....+|.+
T Consensus 359 ~l~~A~~aLkk 369 (486)
T KOG0550|consen 359 TLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHH
Confidence 66655555553
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.46 E-value=29 Score=34.70 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH-----HHhcCCccchhhhhHHHHHHHHHHHHH-------CCCCCCHHH
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTA-----FLSRGKNTYINHVYMETIRCLFKQMVN-------DGIEPDIFS 256 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~-----~~~~g~~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~ 256 (417)
...|.++++...+.+ +...-..+... +....+ .+.|+.+|+...+ .| ....
T Consensus 228 ~~~a~~~~~~~a~~g------~~~a~~~~g~~y~~G~~g~~~d--------~e~a~~~l~~aa~~~~~~a~~~---~~~a 290 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG------HSEAQYALGICYLAGTYGVTQD--------LESAIEYLKLAAESFKKAATKG---LPPA 290 (552)
T ss_pred hhHHHHHHHHHHhhc------chHHHHHHHHHHhhcccccccc--------HHHHHHHHHHHHHHHHHHHhhc---CCcc
Confidence 567889999888863 33322222222 334555 9999999998876 55 3334
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 257 LNSMIKGYILSN-----HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA-QGRTKNARELCDEMKRKGFVPSSKSYNS 330 (417)
Q Consensus 257 ~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 330 (417)
..-+-.+|.+.. +.+.|..++..... .|. |+....-..+.-... ..+...|.++|...-..|.. ..+-.
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~ 365 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYR 365 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHH
Confidence 555555665532 66779999988876 444 555444433333333 35678999999999988843 23333
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860 331 LVSALA----LNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 331 li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 392 (417)
+..+|. -..+.+.|..++.+..+.|....... ...+..+.. +..+.+.-.+..+...|..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 333332 23478899999999999873222222 233344444 7888888888888777764
No 289
>PRK11906 transcriptional regulator; Provisional
Probab=88.38 E-value=11 Score=35.95 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=83.1
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 014860 115 EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY 194 (417)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 194 (417)
.+..+|.++-+...+.. +-|..+...+..+++-.++++.+..+|++.....+ ....+|....-...-+|+.++|.+
T Consensus 318 ~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P--n~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 318 LAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST--DIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34556777777776555 56888888888888888999999999999998775 334455555555567899999999
Q ss_pred HHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 195 VFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 195 ~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
.+++..+.. ..+.........+..|+..+ ++.|.++|.+-.
T Consensus 394 ~i~~alrLs--P~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 434 (458)
T PRK11906 394 CIDKSLQLE--PRRRKAVVIKECVDMYVPNP---------LKNNIKLYYKET 434 (458)
T ss_pred HHHHHhccC--chhhHHHHHHHHHHHHcCCc---------hhhhHHHHhhcc
Confidence 999966541 12223344445556777777 788888886543
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.71 E-value=9.1 Score=28.11 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=18.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 310 RELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
.+-++.+....+.|+.....+.+++|.+..++..|.++|+..+.+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444443
No 291
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.56 E-value=28 Score=33.62 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
|....-+++..++..-.+.-+..+..+|... .-+-..|-.++..|..+|. +.-..+|+++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-----~e~kmal~el~q~y~en~n---------~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-----GESKMALLELLQCYKENGN---------EQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHhcCc---------hhhHHHHHHHHHh
Confidence 3344444555555555555555555555543 1234445555555555532 4444555555544
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.28 E-value=15 Score=30.08 Aligned_cols=137 Identities=16% Similarity=0.152 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK-SYNSL 331 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~l 331 (417)
...|..-+. ..+.+..++|+.-|..+.+ .|...= +-.-.-+.......|+...|...|+++-.....|-.. -..-|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 345555554 4567888999999999987 343221 1122223344677899999999999998765444432 12222
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-C
Q 014860 332 VS--ALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-I 392 (417)
Q Consensus 332 i~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p 392 (417)
=. .+...|.+++.....+-+...|-+.-...-.+|--+-.+.|++.+|.+.|..+.+... |
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22 3457888888888777776666555555667777778899999999999999888655 5
No 293
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.09 E-value=28 Score=33.08 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=75.8
Q ss_pred ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
|.-.++..+.+-|+.+ +|-.|++-|..++..++..++++.|. ..++--..+|..-|.+=...++++.++.+|.+...
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 6667888888888775 89999999999999999999999995 33566677888888887788899999999998877
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC
Q 014860 166 TPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~g 187 (417)
.. .+...|...+..-.+.+
T Consensus 105 k~---l~ldLW~lYl~YIRr~n 123 (660)
T COG5107 105 KS---LNLDLWMLYLEYIRRVN 123 (660)
T ss_pred hh---ccHhHHHHHHHHHHhhC
Confidence 54 45666766666544443
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.93 E-value=14 Score=29.37 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=37.7
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG 320 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 320 (417)
..++.++++.+++.|.-..--.+...++...+ +...|++++|..+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 47888888888888865322234445555554 577888999999999888765
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.58 E-value=15 Score=30.83 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=54.8
Q ss_pred ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+.|+ ++|.+.|-.+...+.. .++...-.|...|. ..+.+++.+++....+-.+.+-.+|...+..|.+.+.+.|+
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPEL-ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3444 6677888888777776 66666666666665 67788888888877765444446778888888888888888
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.02 E-value=8.8 Score=37.62 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI 254 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 254 (417)
.-+.+++.+.+.|-.++|+++ .+|.. .-.....+.|+ ++.|.++..+.. +.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~------------s~D~d---~rFelal~lgr--------l~iA~~la~e~~------s~ 666 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL------------STDPD---QRFELALKLGR--------LDIAFDLAVEAN------SE 666 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc------------CCChh---hhhhhhhhcCc--------HHHHHHHHHhhc------ch
Confidence 445566666666666666654 12221 12233456677 777776665532 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA 334 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 334 (417)
.-|..|-++..+.|++..|.+.|..... |..|+-.+...|+-+....+-...++.|.. |.-.-+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~ 730 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLA 730 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHH
Confidence 6688888888888888888888877765 566777777778777666666666666532 333345
Q ss_pred HHhcCCHHHHHHHHHH
Q 014860 335 LALNGEVEETVKNLWE 350 (417)
Q Consensus 335 ~~~~g~~~~A~~~~~~ 350 (417)
|...|+++++.+++.+
T Consensus 731 ~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIS 746 (794)
T ss_pred HHHcCCHHHHHHHHHh
Confidence 6677888887777654
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.85 E-value=11 Score=31.71 Aligned_cols=72 Identities=17% Similarity=-0.004 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK---GFVPSSKSYNSLVSALALNGEVEET 344 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 344 (417)
+.|.+.|-.+.. .+..-+....-.|...|. ..+.+++..++.+..+. +-.+|...+.+|...|.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344555555544 233233333333333333 44555555555554432 2244555555555555555555544
No 298
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.27 E-value=33 Score=32.21 Aligned_cols=157 Identities=8% Similarity=-0.085 Sum_probs=97.8
Q ss_pred HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH--------
Q 014860 110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRK--LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI-------- 179 (417)
Q Consensus 110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l-------- 179 (417)
.+...++.+.|.++-....+.. ....+...++. +--.++.+.+..-|++.++.++...+..+-...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc----cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 3456677777777766665433 22333344443 335677788888888887776432222222222
Q ss_pred --HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH-H
Q 014860 180 --IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF-S 256 (417)
Q Consensus 180 --i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~ 256 (417)
..-..+.|.+..|.+.|.+..........|+...|-.......+.|+ .++|+.--++..+. |.. .
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--------l~eaisdc~~Al~i----D~syi 321 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--------LREAISDCNEALKI----DSSYI 321 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--------chhhhhhhhhhhhc----CHHHH
Confidence 23345778888888888888877655667777778888888888888 88888777666643 332 2
Q ss_pred HHHHH--HHHHhcCCHHHHHHHHHHhhh
Q 014860 257 LNSMI--KGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 257 ~~~li--~~~~~~g~~~~a~~~~~~m~~ 282 (417)
...+. .++...++|++|.+-|+...+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 334456778888888877655
No 299
>PF13934 ELYS: Nuclear pore complex assembly
Probab=84.63 E-value=7.8 Score=33.51 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=61.5
Q ss_pred CChhHHHHHHhcCCCCC----CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 014860 86 LDDTQFRCAVSELPPRF----NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVN 161 (417)
Q Consensus 86 ~~~~~~~~~l~~~p~~~----~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 161 (417)
+|...+++++..++++. -...+++++...++++.|+.+++.+. -. -.+......++.+ ..++.+.+|...-+
T Consensus 89 LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~-p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 89 LDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG-PP--LSSPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC-CC--CCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 46677888888876662 24578888888899999999998873 22 2334444444555 56688888888776
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 162 QMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 162 ~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
...+.. ....+..++..+....
T Consensus 165 ~~~~~~----~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 165 SYPDEL----RRRLFEQLLEHCLEEC 186 (226)
T ss_pred hCchhh----hHHHHHHHHHHHHHHh
Confidence 654421 1346666666666443
No 300
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.60 E-value=22 Score=29.53 Aligned_cols=202 Identities=15% Similarity=0.035 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
..+......+...+.+..+...+...... .........+......+...++ ...+.+.+.........+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~- 128 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGK--------YEEALELLEKALALDPDP- 128 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHcCCCCc-
Confidence 34444444444455555554444444320 0012223334444444444444 444555554444332221
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHhhhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 254 IFSLNSMIK-GYILSNHVNDALRIFHQMGVVYNY--LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNS 330 (417)
Q Consensus 254 ~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 330 (417)
......... .+...|+++.|...+..... ..- ......+......+...++.+.+...+.+............+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (291)
T COG0457 129 DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN 207 (291)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence 111111111 44455555555555554422 110 01222222233334445555555555555554311112444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 331 LVSALALNGEVEETVKNLWEMIEKQRPVD-FITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
+-..+...++.+.|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555543 122 223333333333444555555555554443
No 301
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.55 E-value=35 Score=31.86 Aligned_cols=283 Identities=12% Similarity=0.046 Sum_probs=172.3
Q ss_pred CCHHHHHHHH--hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860 102 FNNEELCNVM--TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKL--GAAKMYQEMDDVVNQMLATPSFCGTEALYN 177 (417)
Q Consensus 102 ~~~~~ll~~l--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 177 (417)
..|..|-.++ .-.|+-..|.++-....+. +.-|.+-...++.+- .-.|+++.|.+-|+.|...+. .-..-..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE--tRllGLR 158 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE--TRLLGLR 158 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH--HHHHhHH
Confidence 3455555555 4567888887777665322 355666666666543 467999999999999988643 1122223
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHH
Q 014860 178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFS 256 (417)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~ 256 (417)
.|.-.--+.|+.+.|.+.-+..-.. -+.-.-.+...+...+..|+ ++.|+++.+.-++.. +.++..-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gd--------Wd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEK----APQLPWAARATLEARCAAGD--------WDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHhhchhhHH
Confidence 3333344678899999888887764 12335678999999999999 999999999877643 3444432
Q ss_pred --HHHHHHHHHh---cCCHHHHHHHHHHhhhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 257 --LNSMIKGYIL---SNHVNDALRIFHQMGVVYNYLPNSFSYD-YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNS 330 (417)
Q Consensus 257 --~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 330 (417)
-..|+.+-.. ..+...|...-.+.. .+.||..--. .-..++.+.|+..++-.+++.+.+....|+. +.
T Consensus 227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~- 300 (531)
T COG3898 227 RSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL- 300 (531)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH-
Confidence 2233333221 234555555544443 3445544332 3456789999999999999999987555543 32
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Q 014860 331 LVSALALNGEVEETVKNLWEMIEK-QRPVD-FITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF 408 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~ 408 (417)
+..+.+.|+. +..-++..... .++|| ...--.+..+-...|++..|..--+...... |....|..|-+.-.-+-
T Consensus 301 -lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~-pres~~lLlAdIeeAet 376 (531)
T COG3898 301 -LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA-PRESAYLLLADIEEAET 376 (531)
T ss_pred -HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC-chhhHHHHHHHHHhhcc
Confidence 2233455543 33333333332 34454 4566677778888888877766544443322 44445555544443333
Q ss_pred Cc
Q 014860 409 GN 410 (417)
Q Consensus 409 ~~ 410 (417)
|+
T Consensus 377 GD 378 (531)
T COG3898 377 GD 378 (531)
T ss_pred Cc
Confidence 43
No 302
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.21 E-value=23 Score=29.42 Aligned_cols=226 Identities=13% Similarity=0.026 Sum_probs=158.1
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV 193 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 193 (417)
.+....+...+...............+......+...+.+..+...+...............+......+...+.++.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666666433311124677788888888999999999888888763111156677788888888899999999
Q ss_pred HHHHHhHhCCCCCCCCCHHHHHHHHH-HHHhcCCccchhhhhHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCH
Q 014860 194 YVFKYMKNSRNLECRPSIRSYNILFT-AFLSRGKNTYINHVYMETIRCLFKQMVNDGI--EPDIFSLNSMIKGYILSNHV 270 (417)
Q Consensus 194 ~~~~~m~~~~~~g~~p~~~~~~~li~-~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~ 270 (417)
..+....... ..+ ......... .+...|+ .+.+...+.+...... ......+......+...++.
T Consensus 116 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 116 ELLEKALALD---PDP-DLAEALLALGALYELGD--------YEEALELYEKALELDPELNELAEALLALGALLEALGRY 183 (291)
T ss_pred HHHHHHHcCC---CCc-chHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH
Confidence 9999998751 122 222333333 7888999 9999999999865321 12334444455557788999
Q ss_pred HHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 271 NDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW 349 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (417)
+.+...+...... ... ....+..+-..+...++++.|...+......... ....+..+...+...+..+++...+.
T Consensus 184 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 184 EEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred HHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 9999999988762 223 4677888888899999999999999998875322 24455555555557778999999988
Q ss_pred HHHHc
Q 014860 350 EMIEK 354 (417)
Q Consensus 350 ~m~~~ 354 (417)
+....
T Consensus 261 ~~~~~ 265 (291)
T COG0457 261 KALEL 265 (291)
T ss_pred HHHHh
Confidence 88875
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.13 E-value=3.2 Score=24.24 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMI 352 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~ 352 (417)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555443
No 304
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.11 E-value=35 Score=31.51 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=105.0
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC----CCHHHHHH
Q 014860 106 ELCNVMTLQEDPLVCLELFNWASKQPRFRH---DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC----GTEALYNT 178 (417)
Q Consensus 106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~~ 178 (417)
.+.+++.+-.++.+++.+-.|-...+|..| -....-.+-.++...+.++++.+-|+...+..... ....++-.
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 344444555567778888777766666544 22344456677788889999999988887743321 23467889
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCC-CCCCCCCHHHHH-----HHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----C
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSR-NLECRPSIRSYN-----ILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----D 248 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~p~~~~~~-----~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~ 248 (417)
|-..|.+..|+++|.-+.....+-- ..++..=..-|. .|--++...|. +..|.+.-++..+ .
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~--------LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR--------LGDAMECCEEAMKLALQH 239 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHHh
Confidence 9999999999999887666544320 012211112233 34445666777 5556665555443 3
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860 249 GIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 249 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
|-.+ -....-.+-+.|...|+.+.|..-|++..
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3222 23344567788889999999888877653
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.82 E-value=2.9 Score=24.42 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
..+++.|...|...|++++|..++++....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888888889988888888887653
No 306
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.66 E-value=32 Score=30.68 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHH
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR----KGFVPSSK 326 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~ 326 (417)
+-|..-+|.|+.- +..++++--+-+++.++..|-.-....+-.+..-||+.++.+.+.++..+..+ .|.+.|+.
T Consensus 78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 4455555555431 11122232233344444333444566778888889999999988887766553 46666653
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 327 SYNS-LVSALALNGEVEETVKNLWEMIEKQRPVDFI----TYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 327 ~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
...+ |--.|....-+++-++..+.|.++|...+.. +|..+. +....++.+|-.++-+...
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 3222 2233444445678888888888887655443 333322 2234567777777666543
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.12 E-value=2 Score=24.33 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHH
Q 014860 171 GTEALYNTIIYFFAEARKLSRAV 193 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~ 193 (417)
.+...|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 45667777777777777776664
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.64 E-value=4.3 Score=22.58 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
.+|..+..+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888888888888888888888764
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.52 E-value=0.3 Score=38.74 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=67.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG 339 (417)
Q Consensus 260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 339 (417)
+|..+.+.+......++++.+.. .+...+....+.++..|++.++.++.+++++... + .-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence 55666666777777777777765 3444667777777777777776676766666111 1 22244556666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
.+++|..++.++.... ..+..+...+++++|.+++.+ ..+...|..+++.|.+.
T Consensus 85 l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDS 138 (143)
T ss_dssp SHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTS
T ss_pred hHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhc
Confidence 6666655554433221 011112223334444322111 13567888888877654
No 310
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.19 E-value=19 Score=31.81 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=62.7
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA 186 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 186 (417)
-|++++..++|.+++...-.--+.+ -+.-+.....-|-.|.+.+.+..+.++-....+.+.. .+...|.+++..|...
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHH
Confidence 4788888888888776433221211 2345566666677788999999999999888887654 4455588887777654
Q ss_pred -----CCHHHHHHHH
Q 014860 187 -----RKLSRAVYVF 196 (417)
Q Consensus 187 -----g~~~~a~~~~ 196 (417)
|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 8899998877
No 311
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.89 E-value=63 Score=32.81 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=54.3
Q ss_pred ChhHHHHHHhcCC-----CCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 014860 87 DDTQFRCAVSELP-----PRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVN 161 (417)
Q Consensus 87 ~~~~~~~~l~~~p-----~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 161 (417)
....++..+.... ....+-....++.-.|+++.|++++.. ..+...|...+.+.+..++-.+-.+... .
T Consensus 239 ~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLtgqFE~AI~~L~~---~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~ 312 (613)
T PF04097_consen 239 TLEDLQKLILKYGESHFNAGSNPLLYFQVLLLTGQFEAAIEFLYR---NEFNRVDAVHFAIALAYYGLLRVSDSSS---A 312 (613)
T ss_dssp -HHHHHHHHHHH-GGGCTT------HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT-------------
T ss_pred cHHHHHHHHHHhchhhcccchhHHHHHHHHHHHhhHHHHHHHHHh---hccCcccHHHHHHHHHHcCCCCCCCccc---c
Confidence 4455555554331 222334567788889999999999865 2334567777777666655333222222 3
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHhHhC
Q 014860 162 QMLATPSFCGTEALYNTIIYFFAEA---RKLSRAVYVFKYMKNS 202 (417)
Q Consensus 162 ~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 202 (417)
.+.......+...-+..||..|++. .+..+|.+.|--+...
T Consensus 313 ~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 313 PLLSVDPGDPPPLNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --------------HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred ceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 3332221112225688899999875 6788899999888875
No 312
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.14 E-value=16 Score=28.28 Aligned_cols=65 Identities=9% Similarity=0.211 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014860 131 PRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKY 198 (417)
Q Consensus 131 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (417)
...+-|..-....+...- ..+.+.++|..|...+........|......+...|++++|.++|+.
T Consensus 60 ~~Y~nD~RylkiWi~ya~---~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 60 ERYKNDERYLKIWIKYAD---LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GGGTT-HHHHHHHHHHHT---TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHH---HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344566666666555433 23389999999999888767889999999999999999999999975
No 313
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.09 E-value=19 Score=26.39 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
..+...|++++|..+.+.+ .-||...|-+|-. .+.|..+++..-+.+|...
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444555555555544433 2445555444422 2444444444444444444
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.84 E-value=13 Score=31.70 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=42.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH
Q 014860 141 HIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTA 220 (417)
Q Consensus 141 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~ 220 (417)
+..++.+.+.+.+++|+....+-++..+ .|...-..++..||-.|++++|..-++-.-.-. ....+....|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~-p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS-PQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHHhhcC-cccchHHHHHHHHHHH
Confidence 3445566666666776666665555443 455556666677777777777766555444320 0122334445555544
Q ss_pred H
Q 014860 221 F 221 (417)
Q Consensus 221 ~ 221 (417)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 315
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=80.66 E-value=37 Score=29.39 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-G-----------FVPSSKSYNSLVSALALNGEVEETVKNLWEM 351 (417)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (417)
.++.-+.....+++ +...|+...|+.-+..-... | -.|.......++..|.+ +++++|.+++.++
T Consensus 188 Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~l 264 (333)
T KOG0991|consen 188 EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAEL 264 (333)
T ss_pred hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 34444444444443 34556666665555543321 1 12455555555555443 5566666666666
Q ss_pred HHcCCCCCH
Q 014860 352 IEKQRPVDF 360 (417)
Q Consensus 352 ~~~g~~p~~ 360 (417)
-+.|..|..
T Consensus 265 w~lgysp~D 273 (333)
T KOG0991|consen 265 WKLGYSPED 273 (333)
T ss_pred HHcCCCHHH
Confidence 666665543
No 316
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.61 E-value=15 Score=31.33 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVS 333 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~ 333 (417)
|.+..++.+.+.+.+.+|....++-.+. -+.|..+-..++..||-.|+|++|..-++-.-.. ...+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 5566788888999999999988776552 2346667788999999999999998777665543 23345667777776
Q ss_pred H
Q 014860 334 A 334 (417)
Q Consensus 334 ~ 334 (417)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.58 E-value=5.5 Score=21.94 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
..+..+...|.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667778888888888888888887764
No 318
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.00 E-value=41 Score=29.46 Aligned_cols=193 Identities=12% Similarity=0.041 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
...|+.-+.. .+.|++++|.+.|+.+....+.. -...+--.++.++-+.++++.|+..+++....- +-.|| .-|-
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly--P~~~n-~dY~ 110 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY--PTHPN-ADYA 110 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CCCCC-hhHH
Confidence 3444443333 36778888888888887654321 234555566677778888888888888777651 22333 2344
Q ss_pred HHHHHHHhcCCccchh--hhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860 216 ILFTAFLSRGKNTYIN--HVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (417)
.-|.+++.--..+.+. ......|..-|+++.+. =||+. =..+|..-....... . ...=
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----L-A~~E 170 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----L-AGHE 170 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----H-HHHH
Confidence 4444444322211111 11134444444444443 12211 111111111111110 0 0001
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
..+..-|.+.|.+..|..-+++|.+. ...-.....-.+..+|...|-.++|.+.-.-+..
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 13345566666777666666666655 1111233445556666667766666665554444
No 319
>PRK09687 putative lyase; Provisional
Probab=79.75 E-value=46 Score=29.89 Aligned_cols=233 Identities=13% Similarity=0.017 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCh----hHHHHHHHHHHcCCCCCCCHHH
Q 014860 100 PRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMY----QEMDDVVNQMLATPSFCGTEAL 175 (417)
Q Consensus 100 ~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~ 175 (417)
+.......+..+...|..+ +......+.+ .+|...-...+.+++..|+. +++..++..+.... ++..+
T Consensus 36 d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D---~d~~V 107 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQD-VFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED---KSACV 107 (280)
T ss_pred CHHHHHHHHHHHHhcCcch-HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC---CCHHH
Confidence 3333444555565555433 3333333332 34677777778888888874 45777777663332 66677
Q ss_pred HHHHHHHHHHhCCH-----HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860 176 YNTIIYFFAEARKL-----SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI 250 (417)
Q Consensus 176 ~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~ 250 (417)
-...+.+++..+.- .++...+...... ++..+-...+.++.+.++ +.+...+-.+.+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D------~~~~VR~~a~~aLg~~~~---------~~ai~~L~~~L~--- 169 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD------KSTNVRFAVAFALSVIND---------EAAIPLLINLLK--- 169 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC------CCHHHHHHHHHHHhccCC---------HHHHHHHHHHhc---
Confidence 77777777766532 2344455444442 356666678888888886 456666666665
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 251 EPDIFSLNSMIKGYILSN-HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN 329 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 329 (417)
.+|..+-...+.++.+.+ +...+...+..+.. .++..+-...+.++++.|+. .|...+-+..+.+ + ...
T Consensus 170 d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~ 239 (280)
T PRK09687 170 DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGD 239 (280)
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHH
Confidence 355566666667777653 23456666666654 37888888999999999985 4555555555543 2 245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
..+.++...|.. +|...+..+.+. .||...-...+.++.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 678888888885 688888888874 357666655555553
No 320
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.65 E-value=6.8 Score=21.72 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555544
No 321
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.30 E-value=7.6 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHHcCCHhHHHHHH
Q 014860 337 LNGEVEETVKNLWEMIEKQRPV-DF-ITYRTVLDEICRRGRAGEAMKLL 383 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~~~ 383 (417)
+..+.++|+..|....+.-..+ +. .++..|+.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777663222 22 26667777788888877776653
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.97 E-value=0.57 Score=37.12 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.+....+++.+...+...+....+.++..|++.++.+...++++... + .-...++..|.+.|.+++|.-++.
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~~l~~~a~~Ly~ 94 (143)
T PF00637_consen 23 PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKHGLYEEAVYLYS 94 (143)
T ss_dssp GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhcchHHHHHHHHH
Confidence 44555667777766656667788888888888877777777776221 1 222346666777777777777666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
++....- .+..+...++++.|.++..+ ..+...|..++..|...+.
T Consensus 95 ~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 95 KLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp CCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 5443211 11112233444444422211 2356677777776665544
No 323
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.19 E-value=18 Score=27.77 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 156 MDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 156 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
..+.++.+..-+.+ |+..+..+.++++-+.+++..|+++|+-++.+
T Consensus 68 vrkglN~l~~yDlV-P~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLV-PSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccC-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44556666666666 77888888888888888888888888877764
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.40 E-value=5.4 Score=21.77 Aligned_cols=26 Identities=8% Similarity=0.140 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 177 NTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
-.+..+|.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566777889999999999988875
No 325
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.83 E-value=9.3 Score=32.03 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=29.7
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT 166 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 166 (417)
...+.+......+++.+-....|++..|..++.++...|+.++|.++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444455554443344566666666666666666666666666555543
No 326
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.78 E-value=63 Score=29.92 Aligned_cols=232 Identities=14% Similarity=0.028 Sum_probs=116.2
Q ss_pred HHccCChhHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HhHhCCCCCCCCCH---HHHHHHHHHH
Q 014860 147 LGAAKMYQEMDDVVNQMLATPS-FCGTEALYNTIIYFFAEARKLSRAVYVFK-YMKNSRNLECRPSI---RSYNILFTAF 221 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~g~~p~~---~~~~~li~~~ 221 (417)
+....+.+++..++......-. ...--.++..+..+.++.|.+++++..-- .|.-.. ...... ..|..+-+++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~--~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR--ELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777665421 11224466677777777777777665432 222210 011110 1122222222
Q ss_pred HhcCCccchhhhhHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC----CCCCHHHH
Q 014860 222 LSRGKNTYINHVYMETIRCLFKQMVN-DGIEP---DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN----YLPNSFSY 293 (417)
Q Consensus 222 ~~~g~~~~~~~~~~~~a~~~~~~m~~-~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~ 293 (417)
-+.-+ ..+++.+-..-.. .|..| .-...-++-.++...+.++++++.|+...+-.. -......|
T Consensus 94 e~l~~--------f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 94 EKLCE--------FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHH--------hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 22222 2223222222111 12222 112334455666666778888888776644111 11223467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKR----KGFVPSSKSY-----NSLVSALALNGEVEETVKNLWEMIEK----QRPVD- 359 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 359 (417)
..|-..|++..++++|.-+.....+ -|+.-=..-| -.|.-++...|++.+|.+.-++..+- |-++.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 7777778888888887766655432 2322111122 23444666777777777777665443 42221
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 360 FITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
......+.+.|-..|+.+.|..-|+....
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 12233455567777887777666665443
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.45 E-value=96 Score=31.81 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=80.3
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRH---DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
-+..+.+.+.+++|++.-+... |..+ -.......|..+...|++++|-.+.-.|.. .+..-|.-.+..+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f 433 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKF 433 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHh
Confidence 4555555666666666554332 2222 344555566666666666666666666654 3445555555555
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH---HH------HCCCC---
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ---MV------NDGIE--- 251 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~---m~------~~g~~--- 251 (417)
...++.... +.-++.. .-..+...|..++..+.. .+ ...-.++..+ +. ....+
T Consensus 434 ~e~~~l~~I---a~~lPt~---~~rL~p~vYemvLve~L~-~~--------~~~F~e~i~~Wp~~Lys~l~iisa~~~q~ 498 (846)
T KOG2066|consen 434 AELDQLTDI---APYLPTG---PPRLKPLVYEMVLVEFLA-SD--------VKGFLELIKEWPGHLYSVLTIISATEPQI 498 (846)
T ss_pred ccccccchh---hccCCCC---CcccCchHHHHHHHHHHH-HH--------HHHHHHHHHhCChhhhhhhHHHhhcchHH
Confidence 555554332 2223332 112355678888888777 33 2222222211 10 00011
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 252 ----PDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 252 ----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
-+...-..|...|...+++..|..++-....
T Consensus 499 ~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 499 KQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HhhccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1122334577778888888888888877754
No 328
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.38 E-value=3 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHccCChhHHH
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMD 157 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~ 157 (417)
+-+..+|..+...+...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567888888888888888888875
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.91 E-value=62 Score=32.84 Aligned_cols=202 Identities=11% Similarity=0.121 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF 255 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 255 (417)
.=++|-.|.++|++++|.++..+.... .......+-..+..|....+..-... .-++...-|++........|++
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~----~~~~~~~f~~~l~~~~~s~~~~l~~~-~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ----FQKIERSFPTYLKAYASSPDRRLPPE-LRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG----S-TTTTHHHHHHHHCTTTTSS---TC-CCHHHHHHHHHHTTT-TTS-HH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh----hcchhHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHHhcCCCCCChH
Confidence 346788888999999999999766653 44555677788888877644111111 1344444555554433222332
Q ss_pred ---HHHHHHHHHHhc-------------------------C-----------CHHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 014860 256 ---SLNSMIKGYILS-------------------------N-----------HVNDALRIFHQMGVVYNYLPNSFSYDYL 296 (417)
Q Consensus 256 ---~~~~li~~~~~~-------------------------g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~l 296 (417)
+|.++ +.|.. . .+++..+.+.+..+ ..+.+ ....-..
T Consensus 189 K~AvY~il--g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-~~F~~-~~~p~~Y 264 (613)
T PF04097_consen 189 KRAVYKIL--GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-SHFNA-GSNPLLY 264 (613)
T ss_dssp HHHHHHHH--HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-GGCTT-------H
T ss_pred HHHHHHHH--hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-hhccc-chhHHHH
Confidence 22222 11111 0 01111111112221 11112 1111122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH---
Q 014860 297 IHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEICR--- 372 (417)
Q Consensus 297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~--- 372 (417)
...+.-.|.+|.|.+++-+ ..+...|.+.+...+.-|.- +......-..+... .-.|....+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3345566778888777766 22233445555444443322 21111111222222 011222568889999886
Q ss_pred cCCHhHHHHHHHHHHHCCC
Q 014860 373 RGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~ 391 (417)
..+..+|.++|--+...+-
T Consensus 340 ~td~~~Al~Y~~li~~~~~ 358 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKD 358 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-S
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 4678888888887776653
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.99 E-value=6.1 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=21.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 366 VLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
|..+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 56788888888888888888887653
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.77 E-value=60 Score=28.69 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 152 MYQEMDDVVNQMLATPSFCGTE---ALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
..++|..-|+...+..+. ... ...-.+|..+.+.|++++....|.++..
T Consensus 42 ~p~~Al~sF~kVlelEgE-KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGE-KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccc-cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 555555555555554332 111 2223344455555555555555555543
No 332
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.70 E-value=11 Score=20.62 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
|..+-..|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 333
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.43 E-value=69 Score=29.19 Aligned_cols=137 Identities=16% Similarity=0.049 Sum_probs=84.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 014860 248 DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR----KGFVP 323 (417)
Q Consensus 248 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p 323 (417)
..++.|..-++.|..+- ..++++-.+..+...+..|-.--...+-....-||+.|+.+.|++.+.+-.+ .|.+.
T Consensus 64 ~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 64 LVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred cceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 34556666666665432 2234444444444444223223345566777889999999999998877654 37777
Q ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 324 SSKSYNSLVS-ALALNGEVEETVKNLWEMIEKQRPVDFI----TYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 324 ~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
|+..+.+=+. .|....-+.+-.+..+.+.++|...+.. +|..+- |....++++|-.+|-+...
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 8766544332 3444445666677777788887666554 454442 3345678888888776654
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.23 E-value=66 Score=28.87 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITY 363 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~ 363 (417)
++.....|..+|.+.+|.++.++...-. +.+...|-.|+..+...|+--.|.+-++.+.+. |+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444555666666777766666665542 335556666666666666655555555544332 555554444
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.44 E-value=5.9 Score=20.71 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=12.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHH
Q 014860 177 NTIIYFFAEARKLSRAVYVFK 197 (417)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~ 197 (417)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445556666666666666654
No 336
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.40 E-value=22 Score=29.80 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
...+.+......+...+.....|+..+|..++.++...|+.++|.++..++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444334456666666666666666776666666666654
No 337
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.37 E-value=27 Score=24.86 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcCcccc
Q 014860 344 TVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIR 413 (417)
Q Consensus 344 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~ 413 (417)
+.++++.+.++|+ .+......+-.+-...|+.+.|.+++..+. +| +..|..+++++.+++..++.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK---EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---CcHHHHHHHHHHHcCchhhh
Confidence 3455556666552 232233333222334567777777777777 43 34566666777666544443
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.10 E-value=14 Score=20.35 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+|..+-..|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.07 E-value=68 Score=28.58 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=79.5
Q ss_pred hccCChhHHHHHHHHhhcCC----CC-CCC-------HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860 112 TLQEDPLVCLELFNWASKQP----RF-RHD-------ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI 179 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~----~~-~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 179 (417)
.-..|+..|++..++-.+.- .. .++ ......=|.+++..+++.++....-+.-+.+.. .-..+...-
T Consensus 46 vV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk-lPpkIleLC 124 (309)
T PF07163_consen 46 VVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK-LPPKILELC 124 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc-CCHHHHHHH
Confidence 44566677766666543211 01 111 112334478999999999998877776665544 445677788
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh-----cCCccchhhhhHHHHHHHH
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS-----RGKNTYINHVYMETIRCLF 242 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~-----~g~~~~~~~~~~~~a~~~~ 242 (417)
|-.|+|.+++..+.++-..-....+ ..+...|.++...|.. .|. +++|+++.
T Consensus 125 ILLysKv~Ep~amlev~~~WL~~p~---Nq~lp~y~~vaELyLl~VLlPLG~--------~~eAeelv 181 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWLQDPS---NQSLPEYGTVAELYLLHVLLPLGH--------FSEAEELV 181 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhCcc---cCCchhhHHHHHHHHHHHHhcccc--------HHHHHHHH
Confidence 8899999999999998888877632 2233447777776655 587 88998776
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.78 E-value=16 Score=33.28 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=48.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 262 KGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 340 (417)
.-|.+.|.+++|...|..-.. +.| |.+++..-..+|.+..++..|+.=....... -...+.+|.+.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHH
Confidence 456777888888887766543 234 7777777777787777777666554444332 1234566666555
Q ss_pred HHHHHHHHHHHHH
Q 014860 341 VEETVKNLWEMIE 353 (417)
Q Consensus 341 ~~~A~~~~~~m~~ 353 (417)
...++....+..+
T Consensus 174 AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 174 ARESLGNNMEAKK 186 (536)
T ss_pred HHHHHhhHHHHHH
Confidence 5555444444433
No 341
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.58 E-value=16 Score=22.57 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=16.0
Q ss_pred HcCCHhHHHHHHHHHHHCCC-CChhhHHHHHH
Q 014860 372 RRGRAGEAMKLLKELQNKNL-IDGYTYTKLLD 402 (417)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~ 402 (417)
+.|-.+++..++++|.+.|+ .+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555555555555 44544444443
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.40 E-value=11 Score=22.97 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 014860 331 LVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 343
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=71.25 E-value=9.2 Score=25.57 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 362 TYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
.++-+++.+++..-.++++..+.+..+.|..+..+|..-++.++++
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3444444444444444455555555544444444444444444443
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.17 E-value=14 Score=20.36 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
.+|..+...|.+.|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677778888888999998888887653
No 345
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.18 E-value=21 Score=22.13 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 303 QGRTKNARELCDEMKRKGFVPSSKSYNSL 331 (417)
Q Consensus 303 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 331 (417)
.|-..++..++++|.+.|+..+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444444444444444444444433
No 346
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=69.83 E-value=86 Score=28.34 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=36.5
Q ss_pred CCHHHHHHHHH-HHHHhCC-HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 171 GTEALYNTIIY-FFAEARK-LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 171 ~~~~~~~~li~-~~~~~g~-~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
+...+++.|.. .+.+.|- ..-|.++|...... ...+.+++.+.+.+. -+..+++|
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E---------k~i~~lis~Lrkg~m--------d~rLmeff------ 219 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE---------KDINDLISSLRKGKM--------DDRLMEFF------ 219 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh---------ccHHHHHHHHHhcCh--------HhHHHHhc------
Confidence 44444444443 3333333 33466677666543 224566666666554 34444443
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 014860 249 GIEPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 249 g~~p~~~~~~~li~~~~~~g 268 (417)
+|+..+-...-..+...|
T Consensus 220 --Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 220 --PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred --CCcchhHHHHHHHHhHhh
Confidence 566655555554444444
No 347
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.71 E-value=27 Score=34.90 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVSALALNGEVE------ETVKNLWEMIEKQRPVDFITYRTV 366 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 366 (417)
.|+.+|...|++..+.++++..... |-+.=...||..|+...+.|.++ .|.+.++.. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 8999999999999999999998865 33334567899999999999764 233333333 355688899988
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHC
Q 014860 367 LDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
+.+-..--.-.-.+-++.+++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh
Confidence 88766644444455566666553
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.48 E-value=42 Score=24.68 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|.-+++..-+.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 67788777777765422 33333344566788999999999988774 499999988754 57788888888888
Q ss_pred HHHHCCCCCCHHHH
Q 014860 315 EMKRKGFVPSSKSY 328 (417)
Q Consensus 315 ~m~~~g~~p~~~~~ 328 (417)
+|..+|- |....|
T Consensus 93 rla~sg~-p~lq~F 105 (115)
T TIGR02508 93 RLAASGD-PRLQTF 105 (115)
T ss_pred HHHhCCC-HHHHHH
Confidence 8888863 344444
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.38 E-value=95 Score=29.96 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=76.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 239 RCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 239 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
.+++..++...-.|+....-+.| ....|+++.+.+.+..... -+.....+-.+++....+.|++++|..+-+-|..
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 44666666554466666555554 4567899999888887765 3345667788889999999999999999888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 319 KGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 319 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
..+. +..........--..|-+|++...|++...
T Consensus 386 ~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 386 NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 7665 444444333344456777888777777654
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.74 E-value=1.1e+02 Score=29.10 Aligned_cols=213 Identities=8% Similarity=0.030 Sum_probs=100.6
Q ss_pred hccCChhHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHH--HHHHHHHHHHHhC
Q 014860 112 TLQEDPLVCLELFNWASKQPRFRHDAST--YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEA--LYNTIIYFFAEAR 187 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~g 187 (417)
++.|+.+.+..+++ .|..++... ....+...+..|+.+-+. .+.+.|.. ++.. ...+.+...++.|
T Consensus 10 ~~~g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~-~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 10 ILFGELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAI-PDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHhCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCC-ccccCCCcccHHHHHHHCC
Confidence 44566665555543 233333322 223344555667765443 33344432 2211 1224456667888
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHH
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL--NSMIKGYI 265 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~ 265 (417)
+.+.+..+++.-... .-..+... .+.+...+..|+ .+ +++.+.+.|..|+.... .+.+...+
T Consensus 80 ~~~~v~~Ll~~~~~~---~~~~~~~g-~tpL~~A~~~~~--------~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 80 DVKAVEELLDLGKFA---DDVFYKDG-MTPLHLATILKK--------LD----IMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred CHHHHHHHHHcCCcc---cccccCCC-CCHHHHHHHhCC--------HH----HHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 888776666532211 00001111 223334445666 43 44555666766553321 23445556
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHH
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY---NSLVSALALNGEVE 342 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~ 342 (417)
..|+.+.+..+++.-.. ... .|...++.| ...+..|+.+ +.+.+.+.|..++...- .+++...+..|+.+
T Consensus 144 ~~~~~~~v~~Ll~~g~~-~~~-~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~ 216 (413)
T PHA02875 144 MMGDIKGIELLIDHKAC-LDI-EDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID 216 (413)
T ss_pred HcCCHHHHHHHHhcCCC-CCC-CCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH
Confidence 77887766665543221 111 122222333 3344556654 34445566766654321 24444445666654
Q ss_pred HHHHHHHHHHHcCCCCCHH
Q 014860 343 ETVKNLWEMIEKQRPVDFI 361 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~ 361 (417)
+.+.+.+.|..++..
T Consensus 217 ----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 ----IVRLFIKRGADCNIM 231 (413)
T ss_pred ----HHHHHHHCCcCcchH
Confidence 344455667666643
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.72 E-value=1.4e+02 Score=30.33 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC--HHHHHHHHHHHH-hcCCccchhhhhHHHHHHHHHHHHH
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS--IRSYNILFTAFL-SRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~--~~~~~~li~~~~-~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
.+...|..||. .|++.++.+.+.. .+.|. ..++--+...+. ...+ .++|+..+.+...
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~--~l~p~~ea~~~l~la~iL~~eT~n--------~~~Ae~~L~k~~~ 88 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQF--KLSPRQEARVRLRLASILLEETEN--------LDLAETYLEKAIL 88 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHH
Confidence 45677777776 4556666666432 34443 445555666666 4555 8999988887654
Q ss_pred CCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 014860 248 DGIEPDIF-----SLNSMIKGYILSNHVNDALRIFHQMGVVYN---YLPNSFSYDYL-IHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 248 ~g~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~ 318 (417)
..-.++.. .-..++..+.+.+... |.+.+++..+... ..+-...|..+ +..+...++...|.+.++.+..
T Consensus 89 l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 89 LCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred hccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 32222222 2234566677777666 8888887655222 22333344444 3333344899999999988875
Q ss_pred CC---CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHH--HHcCCHhHHHHH
Q 014860 319 KG---FVPSSKSYNSLVSALAL--NGEVEETVKNLWEMIEKQR---------PVDFITYRTVLDEI--CRRGRAGEAMKL 382 (417)
Q Consensus 319 ~g---~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~--~~~g~~~~A~~~ 382 (417)
.- ..|-..++-.++.+... .+..+++.+.++++..... .|-..+|..+++.+ ...|+++.+...
T Consensus 168 ~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~ 247 (608)
T PF10345_consen 168 LANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQK 247 (608)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 42 33445555666666554 4556777777777754322 34566777777765 457777777776
Q ss_pred HHHHHH
Q 014860 383 LKELQN 388 (417)
Q Consensus 383 ~~~m~~ 388 (417)
++++.+
T Consensus 248 L~~lq~ 253 (608)
T PF10345_consen 248 LKQLQQ 253 (608)
T ss_pred HHHHHH
Confidence 666543
No 352
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.43 E-value=95 Score=28.33 Aligned_cols=149 Identities=9% Similarity=0.129 Sum_probs=89.2
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 123 LFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
+|+.+.+...++.|...++.+..+ ....+++-.+..++..+.-+..--...+-.....||+-|+.+.|.+.++..-+.
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444455667788777777655 444555555566666555322122345666778899999999999988876554
Q ss_pred C-CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 014860 203 R-NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI----FSLNSMIKGYILSNHVNDALRIF 277 (417)
Q Consensus 203 ~-~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~ 277 (417)
. ..|.+.|+..+.+=+..+....+ .+.+-++..+.+.+.|...+. .+|.-+- +....++.+|-.+|
T Consensus 134 tvs~g~kiDVvf~~iRlglfy~D~~-------lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lf 204 (393)
T KOG0687|consen 134 TVSLGHKIDVVFYKIRLGLFYLDHD-------LVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLF 204 (393)
T ss_pred HhhcccchhhHHHHHHHHHhhccHH-------HHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHH
Confidence 1 23667777766554444433332 255555555666677765553 2444332 22345788888887
Q ss_pred HHhhh
Q 014860 278 HQMGV 282 (417)
Q Consensus 278 ~~m~~ 282 (417)
-+...
T Consensus 205 ld~vs 209 (393)
T KOG0687|consen 205 LDSVS 209 (393)
T ss_pred HHHcc
Confidence 66543
No 353
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.22 E-value=14 Score=36.97 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhH
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMK 200 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 200 (417)
+...-..++..|.+.|..+.|.++.+.+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444445555555555555555554443
No 354
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=66.58 E-value=1e+02 Score=28.01 Aligned_cols=110 Identities=17% Similarity=0.047 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhhhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860 270 VNDALRIFHQMGVVYNY---LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK 346 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 346 (417)
.+.|.+.|+.......- ..+......++....+.|..+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45778888877762121 456666777777788888877666666665543 366777888888888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHcCCH--hHHHHHHH
Q 014860 347 NLWEMIEKQ-RPVDFITYRTVLDEICRRGRA--GEAMKLLK 384 (417)
Q Consensus 347 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--~~A~~~~~ 384 (417)
+++.....+ +++.. ...++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHH
Confidence 888888753 54444 23344455434433 55555544
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.93 E-value=45 Score=32.01 Aligned_cols=126 Identities=10% Similarity=0.022 Sum_probs=85.1
Q ss_pred HHHHhcCCHHHHH-HHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 262 KGYILSNHVNDAL-RIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 262 ~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 340 (417)
.--...|++..|- ++++.++. +.-.|+....-+.| ....|+++.+.+.+...... +.-...+..++++...+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3334567766554 45555555 44456665554444 56789999999998877643 34456788999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860 341 VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 341 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 392 (417)
+++|...-..|....++ +..........--..|-+++++..++++...+.|
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999988876443 2222222222334567788999988888766554
No 356
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=65.49 E-value=1.3e+02 Score=28.87 Aligned_cols=265 Identities=9% Similarity=0.045 Sum_probs=153.7
Q ss_pred hccCChhHHHHHHHHhhcCCCCCC---C-HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 112 TLQEDPLVCLELFNWASKQPRFRH---D-ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
-++++..+|.++|.++-....-.| . ...-+.++++|- .++.+.+...+....+.-+..+-...|..+ .+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKAL--VAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHhh
Confidence 577889999999998854331111 2 222345667765 456788888887777765432222233332 234778
Q ss_pred CHHHHHHHHHHhHhCCCCCCC------------CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCC
Q 014860 188 KLSRAVYVFKYMKNSRNLECR------------PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIE 251 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~------------p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~ 251 (417)
++.+|.+.+..-.+... +.. +|..-=+..+.++...|. +.++..++++|... ...
T Consensus 94 ~~~kal~~ls~w~~~~~-~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~--------f~EgR~iLn~i~~~llkrE~~ 164 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIK-GTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR--------FSEGRAILNRIIERLLKRECE 164 (549)
T ss_pred hHHHHHHHHHHHHhhhc-ccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHhhhhhc
Confidence 99999998887766411 111 122233567778889999 89999888888754 344
Q ss_pred CCHHHHHHHHHHHHhcCC---------------HHHHHHHHHHhhhh-----CCCCCCHHHHHHHHHHHHhcC--CHHHH
Q 014860 252 PDIFSLNSMIKGYILSNH---------------VNDALRIFHQMGVV-----YNYLPNSFSYDYLIHGLCAQG--RTKNA 309 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~---------------~~~a~~~~~~m~~~-----~~~~~~~~~~~~li~~~~~~g--~~~~A 309 (417)
.+..+||-++-.+.++=- ++.+.-..++|... ..+.|-......++....-.- +..--
T Consensus 165 w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 165 WNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 899999987776665421 22233333333221 123455555555555544332 22233
Q ss_pred HHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 014860 310 RELCDEMKRKGFVPSSKS-YNSLVSALALNGEVEETVKNLWEMIEKQRP----VDFITYRTVLDEICRRGRAGEAMKLLK 384 (417)
Q Consensus 310 ~~l~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~ 384 (417)
+++++.....-+.|+... ...|+..+.. +.+++..+-+.+....+. -=..+|..++....+.++..+|.+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444455556666432 3444444444 444444444333322111 133478888888899999999998888
Q ss_pred HHHHCC
Q 014860 385 ELQNKN 390 (417)
Q Consensus 385 ~m~~~~ 390 (417)
-+.-..
T Consensus 323 lL~~ld 328 (549)
T PF07079_consen 323 LLKILD 328 (549)
T ss_pred HHHhcC
Confidence 776544
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.05 E-value=1e+02 Score=27.55 Aligned_cols=127 Identities=10% Similarity=0.050 Sum_probs=73.4
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHHHHhhh---hCCC
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL-------NSMIKGYILSNHVNDALRIFHQMGV---VYNY 286 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~~~~~m~~---~~~~ 286 (417)
+.+..++.++ +++|+..+.+....|+..|..+. ..+...|...|+...--+......+ ...-
T Consensus 9 ~a~~~v~~~~--------~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk 80 (421)
T COG5159 9 LANNAVKSND--------IEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK 80 (421)
T ss_pred HHHHhhhhhh--------HHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc
Confidence 3444566677 99999999999999887776554 4577788888887655444433221 1222
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 287 LPNSFSYDYLIHGLCAQG-RTKNARELCDEMKRKGFVPS-----SKSYNSLVSALALNGEVEETVKNLWEM 351 (417)
Q Consensus 287 ~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (417)
+..+....+||..+-... .++....+.....+-..+-+ ...-.-+|..+.+.|.+.+|+.+.+.+
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 234444555555554432 34444444444332211111 112245677778888888887765543
No 358
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.90 E-value=93 Score=26.90 Aligned_cols=108 Identities=9% Similarity=-0.052 Sum_probs=69.2
Q ss_pred CCHHHHHHHH--hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860 102 FNNEELCNVM--TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI 179 (417)
Q Consensus 102 ~~~~~ll~~l--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 179 (417)
..+-.+++++ ...++++.|++.+ ..+.+.|+- -..++.++...|+.+.|..++..+.-.. .+......+
T Consensus 77 ~~~~~~~~g~W~LD~~~~~~A~~~L----~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l---~s~~~~~~~ 147 (226)
T PF13934_consen 77 PKYIKFIQGFWLLDHGDFEEALELL----SHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL---SSPEALTLY 147 (226)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHh----CCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC---CCHHHHHHH
Confidence 3466677776 4567788888887 333333332 2247788888899999998887753322 344444444
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG 225 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g 225 (417)
+.. ..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 148 ~~~-La~~~v~EAf~~~R~~~~~~------~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 148 FVA-LANGLVTEAFSFQRSYPDEL------RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHH-HHcCCHHHHHHHHHhCchhh------hHHHHHHHHHHHHHHh
Confidence 444 67789999988877776531 1456777777776443
No 359
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.78 E-value=59 Score=33.79 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=73.5
Q ss_pred HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+...|+++.|.+.-..+ .+..+|..|.......|+.+-|+..|+..+. |+.|--.|.-.|+
T Consensus 653 aLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn------------fekLsfLYliTgn 713 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN------------FEKLSFLYLITGN 713 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh------------hhheeEEEEEeCC
Confidence 34566666666554433 4556777777777777777777777776654 2333334555666
Q ss_pred ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT 306 (417)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 306 (417)
.++..++.+-...+ -|..+ ......-.|++++-.+++..... .| . .|- ....+|.-
T Consensus 714 --------~eKL~Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~g~----~~-l-ayl----ta~~~G~~ 769 (1202)
T KOG0292|consen 714 --------LEKLSKMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENGGQ----LP-L-AYL----TAAAHGLE 769 (1202)
T ss_pred --------HHHHHHHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhcCc----cc-H-HHH----HHhhcCcH
Confidence 55555544443322 12211 11122235777777777766543 12 1 111 12456778
Q ss_pred HHHHHHHHHHHHC
Q 014860 307 KNARELCDEMKRK 319 (417)
Q Consensus 307 ~~A~~l~~~m~~~ 319 (417)
++|.++.++....
T Consensus 770 ~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 770 DQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhhccc
Confidence 8899999888764
No 360
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.40 E-value=7.4 Score=30.15 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 302 AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL 335 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 335 (417)
..|.-.+|..+|+.|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345556678888888888888775 77776654
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.62 E-value=23 Score=24.66 Aligned_cols=47 Identities=11% Similarity=-0.082 Sum_probs=28.3
Q ss_pred ccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHH
Q 014860 149 AAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARKLSRAVYV 195 (417)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 195 (417)
..+..++|...|....+.-...++ -.++..++++|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666665433222 23566677777777777766554
No 362
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.84 E-value=53 Score=23.42 Aligned_cols=61 Identities=18% Similarity=0.055 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 156 MDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 156 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+.++++.+.+.+. -+....+.+-.+-...|+.+.|.+++..+. + ....|...+.++...|.
T Consensus 21 ~~~v~d~ll~~~i--lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-------g~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 21 TRDVCDKCLEQGL--LTEEDRNRIEAATENHGNESGARELLKRIV-Q-------KEGWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c-------CCcHHHHHHHHHHHcCc
Confidence 4556777777665 333344444333345577888888888887 4 23456777777777776
No 363
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=62.14 E-value=1.2e+02 Score=27.45 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 235 METIRCLFKQMVNDGI----EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNAR 310 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (417)
.+.|.+.|++....+. ..+...-..++....+.|..+.-..+++.... ..+......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 7888899999887522 34666667778888888887777777777665 367888899999999999999999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHH----HcCCHhHH
Q 014860 311 ELCDEMKRKG-FVPSSKSYNSLVSALALNGE--VEETVKNLWE----MIEKQRPVDFITYRTVLDEIC----RRGRAGEA 379 (417)
Q Consensus 311 ~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~----~~g~~~~A 379 (417)
++++.....+ +++.. . ..++.++...+. .+.+++++.. +.+. ...+......++..+. .....++.
T Consensus 222 ~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 298 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDEL 298 (324)
T ss_dssp HHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHH
T ss_pred HHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHH
Confidence 9999988864 44333 3 344445553333 3666666654 3322 2223224455555433 33444444
Q ss_pred HHHHHHH
Q 014860 380 MKLLKEL 386 (417)
Q Consensus 380 ~~~~~~m 386 (417)
.++|+.-
T Consensus 299 ~~f~~~~ 305 (324)
T PF11838_consen 299 EEFFEDK 305 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 5554433
No 364
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.18 E-value=2.3e+02 Score=30.78 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
.-|..+++.+-+.+..|.+.++-....+.-+...+.-..+++++..-....|. +-+|.+.+-. .||
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh--------~~qAy~ai~~------npd 1049 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH--------WFQAYKAILR------NPD 1049 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh--------HHHHHHHHHc------CCc
Confidence 44778888888888888888877777664211112224557777777777777 6666544322 344
Q ss_pred HH----HHHHHHHHHHhcCCHH------------HHHH-HHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 254 IF----SLNSMIKGYILSNHVN------------DALR-IFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC 313 (417)
Q Consensus 254 ~~----~~~~li~~~~~~g~~~------------~a~~-~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 313 (417)
.. ...-++..++.+|+++ +.+. +++...+ ........-|+.|-.-+.+.+++.+|-.+.
T Consensus 1050 serrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaR-s~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1050 SERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAAR-SSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhh-cCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 33 3445555666666643 3333 2222222 111122334555555566777777665443
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.15 E-value=1.9e+02 Score=29.32 Aligned_cols=166 Identities=11% Similarity=0.109 Sum_probs=93.1
Q ss_pred HHHHH-hccCChhHHHHHHHHhhcCCCCCCCH-----HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC---CCHHHHH
Q 014860 107 LCNVM-TLQEDPLVCLELFNWASKQPRFRHDA-----STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC---GTEALYN 177 (417)
Q Consensus 107 ll~~l-~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ 177 (417)
+...| ....+.+.|...+.+...... +++- .+-..++..+.+.+... |...++...+.-... +-...|.
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 44444 467889999999987743221 1221 12223445555555544 888888876643210 1123333
Q ss_pred HH-HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-------
Q 014860 178 TI-IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG------- 249 (417)
Q Consensus 178 ~l-i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g------- 249 (417)
.+ +..+...+++..|.+.++.+....+....|-..++-.++.+........ .+++.+..+++....
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~------~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS------PDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHHhhcccCC
Confidence 43 3333344899999999998876521112444566666777666544311 445555555553211
Q ss_pred --CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHh
Q 014860 250 --IEPDIFSLNSMIKGYI--LSNHVNDALRIFHQM 280 (417)
Q Consensus 250 --~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m 280 (417)
-.|-..+|..+++.++ ..|+++.+...++++
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345677777777665 567766666655554
No 366
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.08 E-value=8.1 Score=29.94 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860 337 LNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI 370 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 370 (417)
..|.-.+|..+|.+|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44667788999999999999998 577777653
No 367
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=59.97 E-value=89 Score=25.88 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH
Q 014860 152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK-----------LSRAVYVFKYMKNSRNLECRPSIRSYNILFTA 220 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~ 220 (417)
.+++|..-|++.+...+ ....++..+..+|...+. +++|...|+..... .|+...|+.-+..
T Consensus 50 miedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~-----~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 50 MIEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE-----DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-----CCCcHHHHHHHHH
Confidence 34445555555555543 334666666666665432 66777777777765 8999999998887
Q ss_pred HHh
Q 014860 221 FLS 223 (417)
Q Consensus 221 ~~~ 223 (417)
..+
T Consensus 123 ~~k 125 (186)
T PF06552_consen 123 AAK 125 (186)
T ss_dssp HHT
T ss_pred HHh
Confidence 743
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.67 E-value=27 Score=22.98 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 365 TVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
.+|.+|...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.53 E-value=24 Score=18.01 Aligned_cols=28 Identities=4% Similarity=-0.028 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 175 LYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
.|..+...+...|++++|...|+...+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4666777788888888888888777653
No 370
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.44 E-value=23 Score=31.81 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 286 YLPNSFS-YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328 (417)
Q Consensus 286 ~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 328 (417)
+.|+..+ |+..|....+.|++++|+.+++|.++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3455544 457777777777777777777777777765333343
No 371
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.27 E-value=30 Score=31.09 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=37.0
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 206 ECRPSIRS-YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 206 g~~p~~~~-~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
.+.||..+ |+..|..-.+.|| +++|+.+++|.++.|+.--..+|-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gD--------i~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGD--------VDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCchHHHHHH
Confidence 45577776 6799999999999 999999999999999765555543
No 372
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.24 E-value=63 Score=29.16 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=54.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------cCCHhHH
Q 014860 310 RELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR----------RGRAGEA 379 (417)
Q Consensus 310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A 379 (417)
.++++.|++.++.|.-..|..+.-.+.+.=.+.+.+.+++.+... ..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 578888999999999999988888888888999999999998874 2236667766653 4666666
Q ss_pred HHHHH
Q 014860 380 MKLLK 384 (417)
Q Consensus 380 ~~~~~ 384 (417)
+++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.87 E-value=77 Score=23.67 Aligned_cols=78 Identities=9% Similarity=0.089 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.++|..+.+.+...+- -...+--+-+..+...|++++|+ ..-. ....||...|-+|- -.+.|--+++...+.
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~~---~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLPQ---CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHHT---TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhcc---cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 5666666666666542 22333333444555666666661 1111 12236666655543 345666666666666
Q ss_pred HHHHCC
Q 014860 315 EMKRKG 320 (417)
Q Consensus 315 ~m~~~g 320 (417)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665554
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.13 E-value=79 Score=31.84 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-CCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVV-YNYLPNSFSYDYLIHGLCAQGRTK------NARELCDEMKRKGFVPSSKSYNSL 331 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~g~~p~~~~~~~l 331 (417)
+|+.+|...|++-.+.++++..... .|-+.-...||..|+...+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999988652 233445667888899999999864 3444444433 55688999998
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 014860 332 VSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+.+-..--.-.-..-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8876654444444455555554
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.01 E-value=2.6e+02 Score=29.42 Aligned_cols=229 Identities=12% Similarity=0.016 Sum_probs=120.2
Q ss_pred HccCChhHHHHHHHHHHcCCCCCCC-------HHHHHHHHH-HHHHhCCHHHHHHHHHHhHhCC-CCCCCCCHHHHHHHH
Q 014860 148 GAAKMYQEMDDVVNQMLATPSFCGT-------EALYNTIIY-FFAEARKLSRAVYVFKYMKNSR-NLECRPSIRSYNILF 218 (417)
Q Consensus 148 ~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~-~~g~~p~~~~~~~li 218 (417)
....++.+|..+..++...-.. |+ ...|+.+-. .....|+++.|.++-+...+.- ..-..+.+..+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~-~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKA-PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCc-CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 4677888888888877664332 21 123444432 2234577888888777766541 012344567777888
Q ss_pred HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHhhhhCCCC----
Q 014860 219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI-----KGYILSNH--VNDALRIFHQMGVVYNYL---- 287 (417)
Q Consensus 219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~--~~~a~~~~~~m~~~~~~~---- 287 (417)
.+..-.|+ +++|..+..+..+..-.-+...+.... ..+...|+ ..+.+..|........-.
T Consensus 505 ~a~~~~G~--------~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 505 EAAHIRGE--------LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred HHHHHhch--------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 88888888 888888887766542233443333222 22344563 233333444333211111
Q ss_pred -CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----C
Q 014860 288 -PNSFSYDYLIHGLCAQ-GRTKNARELCDEMKRKGFVPSSKSY--NSLVSALALNGEVEETVKNLWEMIEKQRPV----D 359 (417)
Q Consensus 288 -~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~ 359 (417)
+-..++..++.++.+. +...++..-++--......|-...+ ..|.......|+.++|...++++......+ +
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 1223444455555441 1112222222222222222222222 367788888999999999999887763222 2
Q ss_pred HHHHHHHHHH--HHHcCCHhHHHHHHHH
Q 014860 360 FITYRTVLDE--ICRRGRAGEAMKLLKE 385 (417)
Q Consensus 360 ~~~~~~li~~--~~~~g~~~~A~~~~~~ 385 (417)
-.+-...+.. ....|+..++.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222 2456777776666555
No 376
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.40 E-value=2.3e+02 Score=28.77 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 272 DALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
+..+.+.......|+..+......++. ...|++..++.+++...
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~i 230 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAI 230 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 334444433333555555555555544 23466666666665443
No 377
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=56.38 E-value=41 Score=23.83 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=22.3
Q ss_pred cCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcCcccc
Q 014860 373 RGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIR 413 (417)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~ 413 (417)
..+.+++.++++.+..+| ...|..+.+++.+.+...+.
T Consensus 43 ~tr~~q~~~LLd~L~~RG---~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 43 GSRRDQARQLLIDLETRG---KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCchHHH
Confidence 345666666666666665 44666666666655433443
No 378
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.18 E-value=1.5e+02 Score=26.61 Aligned_cols=68 Identities=7% Similarity=0.088 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH-HHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 324 SSKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDFITYR-TVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
-...+..+..-|++.++.+.+.++.++..+. |.+.|+.... .|--.|....-+++.++..+.|.++|-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999888776554 7777765333 233345566668888889999988875
No 379
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.83 E-value=75 Score=25.21 Aligned_cols=8 Identities=13% Similarity=-0.163 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 014860 345 VKNLWEMI 352 (417)
Q Consensus 345 ~~~~~~m~ 352 (417)
.++++++.
T Consensus 40 eei~~~l~ 47 (145)
T COG0735 40 EELYEELR 47 (145)
T ss_pred HHHHHHHH
Confidence 33333333
No 380
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.16 E-value=75 Score=25.21 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
++.+.+.+.|++++.. -..+++.+...++.-.|.++++++.+.+. .+..|....|+.+.+.
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3445566778777664 35577888888888999999999999887 4666766667777665
No 381
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=55.13 E-value=25 Score=23.53 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 323 PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 323 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
|....++.++..+++-.-+++++..+.+....|. .+..+|---++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3444555666666665556666666666665553 3445555555555443
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.67 E-value=1.1e+02 Score=24.37 Aligned_cols=84 Identities=6% Similarity=0.018 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKG-----FVPSSKSYNSLVSALALNGE-VEETVKNLWEMIEKQRPVDFITYRT 365 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ 365 (417)
..|+++.-....++......+++.+..-. -..+...|++++.+..+..- ---+..+|+-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35667777677777777777766663210 01244567777777766555 3345667777776667777777777
Q ss_pred HHHHHHHcCC
Q 014860 366 VLDEICRRGR 375 (417)
Q Consensus 366 li~~~~~~g~ 375 (417)
||.++.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 7777666533
No 383
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.83 E-value=1e+02 Score=23.81 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014860 119 VCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKY 198 (417)
Q Consensus 119 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (417)
.+++.|... ...+-|+.-...-|...-.. ++..++|..|.+.+....-...|......+-..|++.+|.++|+.
T Consensus 51 rc~~~f~~~---~~YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 51 RCIRYFEDD---ERYKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHhhhh---hhhcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 344444433 33466776666655544333 446779999999988756778888999999999999999999863
No 384
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.74 E-value=95 Score=25.80 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014860 306 TKNARELCDEMKRKGFVPS--SKSY-----NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG 374 (417)
Q Consensus 306 ~~~A~~l~~~m~~~g~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 374 (417)
++.|+.+|+.+.+.--.|. .... ...+-.|.+.|.+++|.+++++.... |+......-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 5667777777776533321 1111 23345677777777777777776653 44444444444444443
No 385
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=53.62 E-value=2.7e+02 Score=28.71 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHH
Q 014860 270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG---FV----------PSSKSYNSLVSALA 336 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~----------p~~~~~~~li~~~~ 336 (417)
.++..+.+....+..|+..+......++... .|++..+..+++.+...| +. .+......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 3455555555555467777777666666544 578888888887665432 11 12222333344433
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 014860 337 LNGEVEETVKNLWEMIEKQR 356 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~ 356 (417)
. ++...++.++++|...|+
T Consensus 258 ~-~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAV 276 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCC
Confidence 3 556666666666666554
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.48 E-value=88 Score=23.37 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 363 YRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
|..|+.-|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555555555555555555
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.32 E-value=83 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888888888888776
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.15 E-value=1.7e+02 Score=26.34 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=113.3
Q ss_pred CCCCCCChhHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhh-------c------------------CCCCCC
Q 014860 81 DSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWAS-------K------------------QPRFRH 135 (417)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~-------~------------------~~~~~~ 135 (417)
.|....+.+.|.-++.+-..+.+-+.++..+-...+...|-..+.... . ..+.+-
T Consensus 146 kWis~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 146 KWISRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred eehhhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccc
Confidence 344445666677777777778888889999988888877777665442 1 123556
Q ss_pred CHHHHHHHHHHHHc-cCChhHHHHHHHHHHcCCCCC------CC---------HHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 014860 136 DASTYHIMTRKLGA-AKMYQEMDDVVNQMLATPSFC------GT---------EALYNTIIYFFAEARKLSRAVYVFKYM 199 (417)
Q Consensus 136 ~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~------~~---------~~~~~~li~~~~~~g~~~~a~~~~~~m 199 (417)
|..-|...++...+ ...++++.++....+..-... .| ..+++...+.|..+|.+.+|.++-+..
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 77778777776543 456788888877774432210 11 134556668899999999999999998
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 014860 200 KNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV-----NDGIEPDIFSLN 258 (417)
Q Consensus 200 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~~~ 258 (417)
..- -+.+...|-.++..+...|| --.|.+-++.+. +.|+..|...++
T Consensus 306 ltl----dpL~e~~nk~lm~~la~~gD--------~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 306 LTL----DPLSEQDNKGLMASLATLGD--------EISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred hhc----ChhhhHHHHHHHHHHHHhcc--------chhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 875 25577889999999999999 555555555554 346666655443
No 389
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=52.84 E-value=3e+02 Score=28.88 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHH
Q 014860 270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG---F----------VPSSKSYNSLVSALA 336 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~----------~p~~~~~~~li~~~~ 336 (417)
.++..+.++.+.+..|+..+......+.. ...|++..|+.+++.....+ + ..|...+..++.++.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555666665544566666665555443 34678888888877655332 1 112222333333332
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 014860 337 LNGEVEETVKNLWEMIEKQR 356 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~ 356 (417)
.|+..+++.+++++...|.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSL 276 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCC
Confidence 2556666666666655554
No 390
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.84 E-value=1.6e+02 Score=25.71 Aligned_cols=28 Identities=7% Similarity=0.111 Sum_probs=17.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014860 336 ALNGEVEETVKNLWEMIEKQRPVDFITY 363 (417)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 363 (417)
+..+++.+|.++|++.....+..+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 4456677788888877766444444333
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.15 E-value=51 Score=21.70 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
++.+.++++.++.. +-|-.---.+|.++...|+ +++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~-----RHD~~NhLqvI~gllqlg~--------~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ-----RHDFLNHLQVIYGLLQLGK--------YEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence 34444555555443 1133333346777777777 7777777766653
No 392
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.11 E-value=1.9e+02 Score=26.12 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG-----FVPSSKSY 328 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~ 328 (417)
...-...+......|++..|.+++.+...... ....|+++=.. ..++++.....+++.+.. ..-|+..|
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~---~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y 200 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQLLE---ELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKY 200 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33444556666677777777777776655210 00111111110 012333333333332210 13466677
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 014860 329 NSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~ 348 (417)
..++.+|.-.|+...+.+-+
T Consensus 201 ~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 201 SKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 77777777777655544433
No 393
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=50.12 E-value=1.7e+02 Score=25.24 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
-+..||-+.-.+...|+++.|.+.|+...+.++. -+-...|--|. +.-.|+++-|.+=|...-.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 3566777777777777777777777777776543 22222222222 2235666666655554443
No 394
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.12 E-value=3.6e+02 Score=29.10 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=32.3
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHcC
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRF--RHDASTYHIMTRKLG-AAKMYQEMDDVVNQMLAT 166 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~ 166 (417)
.++-+...+++.+|..+.+.=+-+.++ ..++..|-.=+..+. +.++.+-.-.++..+.+.
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E 762 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE 762 (928)
T ss_pred HHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 445556788899998887654323332 345555555444443 334444444444444443
No 395
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.04 E-value=1.6e+02 Score=24.87 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=59.7
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGT--EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL 222 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~ 222 (417)
..+...+++++|+.-++........ .+ ..+---|.+.....|.+|+|+..++..... + -.......--+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---~--w~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEE---S--WAAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---c--HHHHHHHHhhhHHH
Confidence 4567888888888888877765321 01 112223456677788899999888887764 1 12222344456678
Q ss_pred hcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 223 SRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 223 ~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
..|+ -++|..-|.+..+.+
T Consensus 171 ~kg~--------k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGD--------KQEARAAYEKALESD 189 (207)
T ss_pred HcCc--------hHHHHHHHHHHHHcc
Confidence 8888 888888888877764
No 396
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.80 E-value=3.7e+02 Score=31.85 Aligned_cols=149 Identities=14% Similarity=0.032 Sum_probs=96.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHH----hHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 178 TIIYFFAEARKLSRAVYVFKY----MKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~----m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
++..+-.+++.+.+|...++. .++. .....-|..+...|...++ +|.+..+...-.. .|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~-----~~~e~l~fllq~lY~~i~d--------pDgV~Gv~~~r~a---~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK-----ETEEALYFLLQNLYGSIHD--------PDGVEGVSARRFA---DPS 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh-----HHHHHHHHHHHHHHHhcCC--------cchhhhHHHHhhc---Ccc
Confidence 566677899999999999998 3332 2233445556669999999 7777776664211 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-H
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNS-L 331 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~-l 331 (417)
...-|......|+|+.|...|+.+.+. .|+ ..+++-++......|.++.+.-..+-.... ..+....++. =
T Consensus 1452 ---l~~qil~~e~~g~~~da~~Cye~~~q~---~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1452 ---LYQQILEHEASGNWADAAACYERLIQK---DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLG 1524 (2382)
T ss_pred ---HHHHHHHHHhhccHHHHHHHHHHhhcC---CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHH
Confidence 233455577889999999999999752 354 667887777777778877776654444432 2223333333 2
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 014860 332 VSALALNGEVEETVKNLW 349 (417)
Q Consensus 332 i~~~~~~g~~~~A~~~~~ 349 (417)
+.+-.+.+++|.......
T Consensus 1525 ~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1525 VEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHhhhcchhhhhhhhh
Confidence 344467777877766654
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.28 E-value=90 Score=27.36 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKR----KG-FVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 352 (417)
-|..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+--+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 455567777778777777777642 22 23445566677777788888887777666554
No 398
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=49.16 E-value=2.7e+02 Score=27.28 Aligned_cols=76 Identities=8% Similarity=-0.091 Sum_probs=44.9
Q ss_pred HHHHHhcCC-CCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCC
Q 014860 91 FRCAVSELP-PRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATP 167 (417)
Q Consensus 91 ~~~~l~~~p-~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 167 (417)
+++++...+ |...|..-+.-+.+.+.+.+.-.+|..|...++-.||.-.|.+.= -+-...+++.|.++|....+..
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcC
Confidence 344444454 555666666666666668888888888877775555555544321 1222333666666666665544
No 399
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.36 E-value=2.5e+02 Score=26.67 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYN--YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
..+.-+-+-|..+|+++.|.+.+.+.+. +- .+..+..|-.+|..-.-.|+|........+.++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~Rd-YCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARD-YCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhh-hhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4566677778888888888888888654 21 1123445666666666777777766666665543
No 400
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=48.29 E-value=2.2e+02 Score=26.07 Aligned_cols=66 Identities=15% Similarity=-0.021 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP---NSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
....+|..+...+.+.|.++.|...+..+.. .+... .....-.-....-..|+.++|...+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455777888888899999999888888865 22111 233344445566677888888888877766
No 401
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.19 E-value=1.7e+02 Score=24.63 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=12.9
Q ss_pred HHcCCHhHHHHHHHHHHH
Q 014860 371 CRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~ 388 (417)
.+.|++++|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356778888877777765
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.83 E-value=1.3e+02 Score=23.30 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=22.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 348 LWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 348 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
++.+....+.|++.....-+++|-+.+++..|.++|+-++.+
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 333333445555555555555555555555555555555444
No 403
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.49 E-value=1.2e+02 Score=22.74 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 357 PVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 357 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.||...|-+| +-.+.|..+++...+.++...|
T Consensus 68 ~pdL~p~~AL--~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAAL--CAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 3444444333 2234455555555555444444
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.72 E-value=76 Score=22.81 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=17.9
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYN 177 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 177 (417)
......|..++|.+.+++.++......|.....
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~ 81 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRLARENGDRRCLA 81 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 344566777777777666665433323433333
No 405
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.67 E-value=1.2e+02 Score=24.83 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860 284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEE 343 (417)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 343 (417)
.|+..+..- ..++..+...++.-.|.++++.+.+.+...+..|..--|..+.+.|-+.+
T Consensus 20 ~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 20 RNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred cCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 565554433 34555555555566788888888887777777776666677777776543
No 406
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=46.64 E-value=1.9e+02 Score=24.91 Aligned_cols=179 Identities=16% Similarity=0.072 Sum_probs=94.2
Q ss_pred CCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 014860 208 RPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY 286 (417)
Q Consensus 208 ~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 286 (417)
.|+ ..+||-+---+...|+ ++.|.+.|+...+....-+-...|--|. +---|++..|.+-|-..-+...-
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~--------fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGN--------FDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred CCCcHHHHHHHHHHHHhccc--------chHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCC
Confidence 444 4567777777778888 8888888888776643222222232222 22357777777666555442333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------
Q 014860 287 LPNSFSYDYLIHGLCAQGRTKNARE-LCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV------- 358 (417)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------- 358 (417)
.|-...|-.++. ..-++.+|.. +.++.+.. |..-|...|-.|.- |++.+ ..+++.+.+. -.-
T Consensus 166 DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~-a~~n~~~Ae~ 235 (297)
T COG4785 166 DPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETLMERLKAD-ATDNTSLAEH 235 (297)
T ss_pred ChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHHHHHHHhh-ccchHHHHHH
Confidence 344444544443 2233444443 33333322 54555554444332 11111 1223333221 111
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 359 DFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
=..||--|.+-+...|+.++|..+|+-.+..++-+.+.++-.+--+.
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~ 282 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELS 282 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 12466667777788888999998888888777655555544443333
No 407
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.54 E-value=1.1e+02 Score=21.88 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+...|...+....... .+++ ++|+-....|+..|..+|..+++...-.--.+...++++.|..
T Consensus 9 ~~~~~k~~~~rk~~Ls---------~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS---------AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred hHHHHHHHHHHHhccC---------HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4455555554443333 2333 7888888888888888888888877777777888888888764
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.18 E-value=1.7e+02 Score=24.32 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhhCCCCCC-HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 270 VNDALRIFHQMGVVYNYLPN-SFS-----YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL 337 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~-~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 337 (417)
++.|+.+++.+.+....+-+ ... --..+..|.+.|.+++|.+++++.... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 78899999999884332111 111 223455688999999999999998873 454444444433333
No 409
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=45.33 E-value=3.3e+02 Score=27.32 Aligned_cols=201 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 268 (417)
.+...++.+..... --.+....+..|+..+.... .+...++++++.. .. ...+..++++....|
T Consensus 291 ~~~l~~L~~~~~~~---~~~~~~~~f~~lv~~lR~~~---------~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~G 354 (574)
T smart00638 291 VEVLKHLVQDIASD---VQEPAAAKFLRLVRLLRTLS---------EEQLEQLWRQLYE-KK---KKARRIFLDAVAQAG 354 (574)
T ss_pred HHHHHHHHHHHHHH---hccchHHHHHHHHHHHHhCC---------HHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcC
Q ss_pred CHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCC
Q 014860 269 HVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS-------KSYNSLVSALALNGE 340 (417)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~~~~~li~~~~~~g~ 340 (417)
-.....-+.+.+.. ..+.+ .....-..+-...+.-..+-...+++-+......+.. .+|.+++.-+|....
T Consensus 355 T~~a~~~i~~~i~~-~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~ 433 (574)
T smart00638 355 TPPALKFIKQWIKN-KKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTP 433 (574)
T ss_pred CHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCC
Q ss_pred H------HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860 341 V------EETVKNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 341 ~------~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
. ++....+.+.... --.-|..--...|+++++.|.......+-.-+....-.+...-...+.++.+
T Consensus 434 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~ 506 (574)
T smart00638 434 SCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRN 506 (574)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.27 E-value=1.4e+02 Score=26.18 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEK----QR-PVDFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
.--+..-|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.++...+.-+|.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345667788888999998888887533 32 2344456677777888888888887766664
No 411
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=45.24 E-value=66 Score=24.30 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhCCCCC-CHHHHHHH
Q 014860 272 DALRIFHQMGVVYNYLP-NSFSYDYL 296 (417)
Q Consensus 272 ~a~~~~~~m~~~~~~~~-~~~~~~~l 296 (417)
++.+.+..++...|+.| |+.+--++
T Consensus 7 ~~~~~L~~Lk~~tgi~~~Nil~R~A~ 32 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITPWNILCRIAF 32 (113)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 44455555554455555 44333333
No 412
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.22 E-value=3.2e+02 Score=27.07 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=47.0
Q ss_pred HHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-C------------CCHHHHHHHHHHH
Q 014860 235 METIRCLFKQ-MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY-L------------PNSFSYDYLIHGL 300 (417)
Q Consensus 235 ~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~------------~~~~~~~~li~~~ 300 (417)
.++..+.+.. +.+.|+..+......++... .|+...|..++++... +|- . .+....-.++.++
T Consensus 180 ~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia-~~~~~It~~~V~~~lg~~~~~~i~~ll~al 256 (509)
T PRK14958 180 PLQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIA-YGNGKVLIADVKTMLGTIEPLLLFDILEAL 256 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh-cCCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444444433 44567777777777666543 5888899888877654 321 1 1111222233332
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC
Q 014860 301 CAQGRTKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 301 ~~~g~~~~A~~l~~~m~~~g~~p~ 324 (417)
. .|+.+.+..++++|...|..|.
T Consensus 257 ~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 257 A-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHH
Confidence 2 2556666666666666655543
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.07 E-value=6.3e+02 Score=30.17 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 014860 325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLID 393 (417)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 393 (417)
..+|-...+...+.|+++.|...+-...+.+ .|. .+--..+-.-..|+...|+.++++-.+.+.|+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 4678888888889999999988887776654 333 34445567788999999999999999877765
No 414
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.97 E-value=2.1e+02 Score=24.66 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP---NSFSY--DYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
.++..-+|.||--|.-...+.+|-+.|..- .|+.+ |..++ ..-|......|+.++|.+....+.-
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 445555555555555554455544444332 23333 22222 2345556667777777776666543
No 415
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.83 E-value=4.5e+02 Score=28.12 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=17.8
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR 305 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 305 (417)
+.....+|.++-.+|.+ .-+.+|.++++.|.
T Consensus 1159 k~D~r~da~klk~~me~---------qk~tli~AL~kKg~ 1189 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEK---------QKDTLIDALVKKGE 1189 (1304)
T ss_pred ccCCcchHHHHHHHHHH---------HHHHHHHHHHHhhh
Confidence 33334457777777765 23556676665553
No 416
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=42.43 E-value=2e+02 Score=23.90 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCH-HHHHHHHHHHHhcCC---ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSI-RSYNILFTAFLSRGK---NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY 264 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~-~~~~~li~~~~~~g~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 264 (417)
+++|+.-|++.... .|+- .++..+-.+|...+. .......++++|.+.|+...+. .|+..+|+.-+...
T Consensus 51 iedAisK~eeAL~I-----~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKI-----NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 44555556665543 5653 455555555544332 2222344578888888887766 69999999888876
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 014860 265 ILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~ 282 (417)
.+ |-++..++.+
T Consensus 124 ~k------ap~lh~e~~~ 135 (186)
T PF06552_consen 124 AK------APELHMEIHK 135 (186)
T ss_dssp HT------HHHHHHHHHH
T ss_pred Hh------hHHHHHHHHH
Confidence 43 4455555443
No 417
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.48 E-value=3.5e+02 Score=26.51 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=55.9
Q ss_pred HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 235 METIRCLFKQM-VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC 313 (417)
Q Consensus 235 ~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 313 (417)
.+...+.++.. ...|+..+......+.. ...|+...|+.++++.....+ ...++..+...+
T Consensus 182 ~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~---~~it~~~V~~~l------------- 243 (484)
T PRK14956 182 LSVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD---SKLTGVKIRKMI------------- 243 (484)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC---CCcCHHHHHHHh-------------
Confidence 44555555554 34677777777766654 345899999999988654111 112222221111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 014860 314 DEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF 360 (417)
Q Consensus 314 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 360 (417)
|.. +...+..++.+....+....|+.++++|.+.|..|..
T Consensus 244 ------g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ------GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ------CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 222 4445555555555555555666666666666655543
No 418
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.15 E-value=94 Score=24.40 Aligned_cols=68 Identities=7% Similarity=-0.016 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHcc---CChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 135 HDASTYHIMTRKLGAA---KMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
++..+--.+.-++.+. .++++...+++.+.+............-|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4444444444444443 4566677788888863332233444445666788999999999999988875
No 419
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.15 E-value=1.1e+02 Score=22.67 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
..+|..|...|+.++|..-+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 345556666677777777776653
No 420
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=3.8e+02 Score=26.78 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860 144 TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFA-EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL 222 (417)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~ 222 (417)
|..+.+.|-+..|.++...+.+.... -|+...-.+|+.|+ ++.+++-.++++++.+....+..-|+-.--.++..-|.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~-eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l 427 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPS-EDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFL 427 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCc-CCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHH
Q ss_pred hcCCc--cchhhhhHHHHHHHH-----HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860 223 SRGKN--TYINHVYMETIRCLF-----KQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQM 280 (417)
Q Consensus 223 ~~g~~--~~~~~~~~~~a~~~~-----~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (417)
+.... .......+..|...+ +-|....+.|+..|-+.-+.+......-..|...+-.|
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~lv~l 492 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHPLVLSELLDELLLGDDALTKDLKFDGSSAENSELPALMLLVKL 492 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhccCCchhhhhhhcccccccccccchHHHHHHHH
No 421
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.20 E-value=4.4e+02 Score=27.27 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=57.6
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---CC----------CCHHHHHHHHHHHH
Q 014860 236 ETIRCLFKQM-VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN---YL----------PNSFSYDYLIHGLC 301 (417)
Q Consensus 236 ~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~----------~~~~~~~~li~~~~ 301 (417)
++..+.+... .+.|+..+......++... .|++..+..+++++.. +| +. .+......|+.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia-~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA-LGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4444455443 4568888888888877655 5999999999988765 22 11 12233444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 014860 302 AQGRTKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g~~p~ 324 (417)
. ++...++.++++|...|+.+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 4 889999999999998887543
No 422
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.02 E-value=91 Score=29.65 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=2.8
Q ss_pred HhcCCHH
Q 014860 265 ILSNHVN 271 (417)
Q Consensus 265 ~~~g~~~ 271 (417)
+..|+.+
T Consensus 43 ~~~~~~~ 49 (413)
T PHA02875 43 MKFRDSE 49 (413)
T ss_pred HHcCCHH
Confidence 3444443
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.78 E-value=4.9e+02 Score=27.71 Aligned_cols=207 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHcCC--CCCCCHHHHHHHHHHHHHhCCH--HHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 140 YHIMTRKLGAAKMYQEMDDVVNQMLATP--SFCGTEALYNTIIYFFAEARKL--SRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
|..|+..|...|+.++|.+++.+..... ....-...+..+++.+.+.+.. +-+++.-+...+. .-.-....+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~---~p~~gi~Ift 583 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK---NPEAGIQIFT 583 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc---Cchhheeeee
Q ss_pred H------------HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------------HH
Q 014860 216 I------------LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH------------VN 271 (417)
Q Consensus 216 ~------------li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------------~~ 271 (417)
. .+-.|..... .+.+..+++.+....-.++..-.+.++..|+..=+ .+
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~--------~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E 655 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKE--------PKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPE 655 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhC--------cchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchh
Q ss_pred H--HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 272 D--ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW 349 (417)
Q Consensus 272 ~--a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (417)
. -.++.........+.|.. ++.-.-..+-+++-.-++.+|.+ .......++. ..++++.|..+..
T Consensus 656 ~~~rekl~~~l~~s~~Y~p~~-----~L~~~~~~~l~ee~aill~rl~k-----he~aL~Iyv~---~L~d~~~A~~Yc~ 722 (877)
T KOG2063|consen 656 TTVREKLLDFLESSDLYDPQL-----LLERLNGDELYEERAILLGRLGK-----HEEALHIYVH---ELDDIDAAESYCL 722 (877)
T ss_pred hhHHHHHHHHhhhhcccCcch-----hhhhccchhHHHHHHHHHhhhhh-----HHHHHHHHHH---HhcchhHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH
Q 014860 350 EMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 350 ~m~~~g~~p~~~~~~~li~~~~ 371 (417)
.--+ ...++...|..++..|.
T Consensus 723 ~~y~-~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 723 PQYE-SDKTNKEIYLTLLRIYL 743 (877)
T ss_pred Hhcc-CCCcccHHHHHHHHHHh
No 424
>PRK10941 hypothetical protein; Provisional
Probab=39.60 E-value=2.8e+02 Score=24.77 Aligned_cols=78 Identities=9% Similarity=-0.024 Sum_probs=48.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH
Q 014860 141 HIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTA 220 (417)
Q Consensus 141 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~ 220 (417)
+.+-.++.+.++++.|..+.+.+....+ .+..-+.--.-.|.+.|++..|..=++...+.- .-.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P--~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~--P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDP--EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC--PEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--CCchhHHHHHHHHHH
Confidence 3444567777788888887777777654 445555555666777777777777666665431 224555555555554
Q ss_pred HH
Q 014860 221 FL 222 (417)
Q Consensus 221 ~~ 222 (417)
..
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 425
>PRK10941 hypothetical protein; Provisional
Probab=39.46 E-value=2.8e+02 Score=24.75 Aligned_cols=78 Identities=10% Similarity=-0.015 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CChhhHHHHHHHH
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVD-FITYRTVLDEICRRGRAGEAMKLLKELQNKNL--IDGYTYTKLLDVL 404 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~~~ 404 (417)
.+.+-.+|.+.++++.|+++.+.+..- .|+ ..-+.----.|.+.|.+..|..=++...+... |+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 455666777888888888888887764 343 33333334457788888888887777776654 5666666666666
Q ss_pred Hhh
Q 014860 405 EDD 407 (417)
Q Consensus 405 ~~~ 407 (417)
.+.
T Consensus 262 ~~~ 264 (269)
T PRK10941 262 EQK 264 (269)
T ss_pred hhc
Confidence 544
No 426
>PRK09857 putative transposase; Provisional
Probab=39.19 E-value=2.8e+02 Score=25.08 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=12.6
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 368 DEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
.-+.+.|.-+++.++..+|...|+
T Consensus 248 EqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 248 ERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333334444455666666666665
No 427
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.10 E-value=4e+02 Score=26.42 Aligned_cols=87 Identities=14% Similarity=0.047 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C------------CCHHHHHHHHHHHHh
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-V------------PSSKSYNSLVSALAL 337 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~------------p~~~~~~~li~~~~~ 337 (417)
++..+.+....+..|+..+......++... .|+...|..+++.....|- . ++....-.++.++..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~ 258 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA 258 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 344444444444367766666665555442 5788888888876654331 1 122223334444333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH
Q 014860 338 NGEVEETVKNLWEMIEKQRPVDF 360 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~ 360 (417)
|+.+.++.++++|.+.|..|..
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 259 -KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHH
Confidence 6666677777777766665543
No 428
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=38.69 E-value=1.8e+02 Score=26.86 Aligned_cols=83 Identities=8% Similarity=-0.030 Sum_probs=57.1
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
..-|-++|.+++|++.|....... +.++.+|..-..+|.+...+..|+.=....+..+ ...+.+|++.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---------~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---------KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---------HHHHHHHHHHH
Confidence 455678999999999998765433 4488888888889999999988877666665532 23456666665
Q ss_pred CHHHHHHHHHHhHh
Q 014860 188 KLSRAVYVFKYMKN 201 (417)
Q Consensus 188 ~~~~a~~~~~~m~~ 201 (417)
....++....+.++
T Consensus 173 ~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 173 QARESLGNNMEAKK 186 (536)
T ss_pred HHHHHHhhHHHHHH
Confidence 55555444444443
No 429
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=38.48 E-value=5e+02 Score=27.43 Aligned_cols=199 Identities=15% Similarity=0.099 Sum_probs=107.6
Q ss_pred HHhCCHHHHHHHHHHhHhCCC-CCCCCC---HHHHHHHHHHH-HhcCCccchhhhhHHHHHHHHHHHHHC----CCCCCH
Q 014860 184 AEARKLSRAVYVFKYMKNSRN-LECRPS---IRSYNILFTAF-LSRGKNTYINHVYMETIRCLFKQMVND----GIEPDI 254 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~-~g~~p~---~~~~~~li~~~-~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~ 254 (417)
.-..++++|..+..+....-. .+..+. ...|+.+-... ...|+ .++|+++-+..... -..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~--------~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD--------PEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhcccccchhhh
Confidence 345788999988888776510 011111 12455444333 23455 78888877766542 223455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH---HHHHH--HHHhcCC--HHHHHHHHHHHHHC-----CC-
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY---DYLIH--GLCAQGR--TKNARELCDEMKRK-----GF- 321 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~~li~--~~~~~g~--~~~A~~l~~~m~~~-----g~- 321 (417)
..+..+..+..-.|++++|..+..+..+ ..-.-++..+ ..+.. .+...|. +.+.+..|...... ++
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 6667777888889999999988877655 2112333333 22222 2445563 33444444444332 11
Q ss_pred CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 322 VPSSKSYNSLVSALALNGE-VEETVKNLWEMIEKQRPVDFITY--RTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
.+-..++..++.++.+... ..++..-+.--......|-..-+ ..|+......|+.++|...+.++.....
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 1223456666666666211 11222222222222222222222 3567788889999999999999987543
No 430
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=38.43 E-value=2.8e+02 Score=24.43 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCCCHHHHHHHHHHHHhcCC
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNYLPNSFSYDYLIHGLCAQGR 305 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~~li~~~~~~g~ 305 (417)
|-......++....+....++...+++.+... .|..++....+.++.+++..|.
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GS 65 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGS 65 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcC
Confidence 44444445555554444444555555444331 1122334455555555555443
No 431
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.42 E-value=4.1e+02 Score=26.36 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY---DYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
..++.-|.+.+++++|..++..|.= +. -....| +.+.+.+.+..--.+.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW--~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW--NT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc--cc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 4577789999999999999999953 22 223333 44455555655455555556655543
No 432
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.06 E-value=1.4e+02 Score=22.47 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=26.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 366 VLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
+|+-+.++...++|+++++-|.+.|-.+...-+-|-..+.+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVKK 108 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 455566677777888888888887775555544444444443
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.88 E-value=1.9e+02 Score=22.28 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 308 NARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWE 350 (417)
Q Consensus 308 ~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (417)
++.++|..|..+|+--. ...|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554332 44555556666666666666666653
No 434
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.84 E-value=1.5e+02 Score=23.47 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 284 YNYLPNSFSYDYLIHGLCAQ-GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 341 (417)
.|+..+. --..++..+... +..-.|.++++.+.+.+...+..|.---|..+.+.|-+
T Consensus 11 ~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 11 AGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred cCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444333 233344444443 34556677777776666555666655555666666654
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.83 E-value=1.5e+02 Score=21.22 Aligned_cols=21 Identities=29% Similarity=0.185 Sum_probs=12.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHC
Q 014860 369 EICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~ 389 (417)
.....|+.++|.+.+++.++.
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 344556666666666665543
No 436
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.37 E-value=4.9e+02 Score=26.97 Aligned_cols=231 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc--------
Q 014860 153 YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR-------- 224 (417)
Q Consensus 153 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~-------- 224 (417)
+.+.....+.+.+...++.....--.+=..|.-.|++++|+++--..... +.+.++...+.+++.-|...
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~--F~Vd~~S~y~etivak~id~yi~~~~~~ 116 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDD--FDVDENSDYVETIVAKCIDMYIETASET 116 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--ccccCccchhhHHHHHHHHHHHHHHHHH
Q ss_pred ----C-----CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860 225 ----G-----KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY 295 (417)
Q Consensus 225 ----g-----~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 295 (417)
+ + ++...++++|.+. ..+..-|..+|.......+++.-++. .|... .+....+.
T Consensus 117 ~~~~~~~~~iD---------~rL~~iv~rmi~k--cl~d~e~~~aiGia~E~~rld~ie~A--il~~d----~~~~~~~y 179 (929)
T KOG2062|consen 117 YKNPEQKSPID---------QRLRDIVERMIQK--CLDDNEYKQAIGIAFETRRLDIIEEA--ILKSD----SVIGNLTY 179 (929)
T ss_pred hcCccccCCCC---------HHHHHHHHHHHHH--hhhhhHHHHHHhHHhhhhhHHHHHHH--hcccc----ccchHHHH
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014860 296 LIHGLCAQGR-TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG 374 (417)
Q Consensus 296 li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 374 (417)
+++.+....+ .+--.++++.|.+.=.+....-|-.+..+|....+.+.|.++++++.+. .-....|..-...|....
T Consensus 180 ll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e--~~~llayQIAFDL~esas 257 (929)
T KOG2062|consen 180 LLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE--DDLLLAYQIAFDLYESAS 257 (929)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc--chhhhHHHHHHHHhhccC
Q ss_pred CHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 375 RAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 375 ~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
+ +--..+.+.|......+......+++.|.
T Consensus 258 Q-efL~~v~~~l~~d~~~de~p~~kii~ILS 287 (929)
T KOG2062|consen 258 Q-EFLDSVLDRLPADDARDEKPMEKIISILS 287 (929)
T ss_pred H-HHHHHHHHHcccccccccChHHHHHHHhc
No 437
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.02 E-value=4.7e+02 Score=26.67 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=49.5
Q ss_pred HHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-CC------------CHHHHHHHHHHH
Q 014860 235 METIRCLFKQ-MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY-LP------------NSFSYDYLIHGL 300 (417)
Q Consensus 235 ~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~------------~~~~~~~li~~~ 300 (417)
.++..+.+.+ +.+.|+..+......++.. ..|++..+..++++... ++- .. +......++.++
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia-~~~~~It~~~V~~~Lg~~~~~~i~~LldaL 261 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIA-FGSGQLQEAAVRQMLGSVDRSHVFRLIDAL 261 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4555555544 4567888888888777763 45899999999887654 221 11 122222333333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 014860 301 CAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 301 ~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
.. |+...+++++++|.+.|..
T Consensus 262 ~~-~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 262 AQ-GDGRTVVETADELRLNGLS 282 (618)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCC
Confidence 33 5666666666666666554
No 438
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=36.91 E-value=1.7e+02 Score=21.63 Aligned_cols=60 Identities=15% Similarity=0.017 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG--EVEETVKNLWEMIEK 354 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 354 (417)
...++.-|...+++++|.+-+.++..... .......+|..+...+ .-+....++..+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~ 66 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQA 66 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHc
Confidence 34566777788888888888887764322 2333444555554442 233344455555544
No 439
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.78 E-value=3.1e+02 Score=24.44 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHCCCC
Q 014860 235 METIRCLFKQMVNDGIE 251 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~ 251 (417)
..+|...|+...+.|..
T Consensus 129 ~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 129 LVKALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 56666666666666643
No 440
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.59 E-value=97 Score=23.15 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
++..+...+..-.|.++++.+.+.+...+..|.--.|+.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555555567777777777766667666666667777766543
No 441
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.39 E-value=3.6e+02 Score=27.07 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 251 EPDIFSLNSMIKGYILS--NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 328 (417)
-|+..+..+++.-.... ...+-+-.++..|.. ...|--...|..--.+...|+...|...+.........-..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 36666666655444332 234556677777765 22232222222222234467888887777665533211122334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 329 NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
..|.....+.|...+|-.++.+...-. ...+.++..+-++|.-..+++.|++.|++..+....+...-+.|+..-|+.
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhh
Confidence 556666777788888888888777653 445567778888999999999999999998887654556666665544443
No 442
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.37 E-value=3.4e+02 Score=24.78 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNAR 310 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~ 310 (417)
.+|.-|+.++|..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35777888888888776543
No 443
>PLN03025 replication factor C subunit; Provisional
Probab=36.32 E-value=3.4e+02 Score=24.79 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 236 ETIRCLFKQ-MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 236 ~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
++..+.+.+ ..+.|+..+......++..+ .|+...+...++.... + .+... .+...
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~--~-----------------~~~i~--~~~v~ 217 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHS--G-----------------FGFVN--QENVF 217 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh--c-----------------CCCCC--HHHHH
Confidence 444444444 33567777777777666543 4777777777763321 0 00000 00000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 014860 315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI 361 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 361 (417)
++ .| .+.......++.++. .+++++|...+.+|...|..|...
T Consensus 218 ~~--~~-~~~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 218 KV--CD-QPHPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred HH--cC-CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 11 01 123334444555443 467777777777777777766544
No 444
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.22 E-value=1.7e+02 Score=22.12 Aligned_cols=38 Identities=8% Similarity=-0.084 Sum_probs=24.2
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY 264 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 264 (417)
|.-+.++.. .++|+++.+.|.+.| ..+...-+.|-..+
T Consensus 68 iD~lrRC~T--------~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 68 IDYLRRCKT--------DEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHhCc--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444556666 788888888888877 55555554444433
No 445
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=36.03 E-value=3.1e+02 Score=24.29 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNYLP-----NSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
.++.-|.+.|+++.|-.++--+....+... +...-.-++......++|+-+.++.+-+..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344455555555555544444433111112 233334455666667777777777666654
No 446
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.02 E-value=3.5e+02 Score=24.91 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
+..+.|+..+|.+.|+++.+...+..-......||.++....-+.+...++.+-.
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566666666666555422111111122345555555444444444444333
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.36 E-value=3.1e+02 Score=24.04 Aligned_cols=138 Identities=10% Similarity=0.180 Sum_probs=84.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
-+..|++.-++.-|...++.+.+- ..+- ..|--|.+..+ ..-..++.+-....++.-+.....
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP--------IQSR-CAiLRysklsd--------~qiL~Rl~~v~k~Ekv~yt~dgLe 198 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP--------IQSR-CAILRYSKLSD--------QQILKRLLEVAKAEKVNYTDDGLE 198 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh--------HHhh-hHhhhhcccCH--------HHHHHHHHHHHHHhCCCCCcchHH
Confidence 345555555555555555554431 2222 22333555554 444444555555677777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNY-----------LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS 327 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 327 (417)
+++ +...|+..+|+..++.-....|. .|.......++..|. .+++++|.+++.++.+.|..|.. .
T Consensus 199 aii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-i 274 (333)
T KOG0991|consen 199 AII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-I 274 (333)
T ss_pred Hhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-H
Confidence 766 45678888888888776543332 256666666666554 57899999999999999998755 3
Q ss_pred HHHHHHHHHh
Q 014860 328 YNSLVSALAL 337 (417)
Q Consensus 328 ~~~li~~~~~ 337 (417)
.+.+.+.+-.
T Consensus 275 i~~~FRv~K~ 284 (333)
T KOG0991|consen 275 ITTLFRVVKN 284 (333)
T ss_pred HHHHHHHHHh
Confidence 4555555433
No 448
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=35.06 E-value=4.7e+02 Score=26.12 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC-
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI- 250 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~- 250 (417)
+..+|+.-+..-.+.|+.+.+.-+|+...-- +..=...|--.+.-.-..|+ .+.|..++..-.+--+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~----cA~Y~efWiky~~~m~~~~~--------~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP----CALYDEFWIKYARWMESSGD--------VSLANNVLARACKIHVK 363 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH----HhhhHHHHHHHHHHHHHcCc--------hhHHHHHHHhhhhhcCC
Confidence 5678888888889999999999999988752 33334567777777777788 7777777665554332
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCH
Q 014860 251 -EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF-SYDYLIHGLCAQGRTKNAR---ELCDEMKRKGFVPSS 325 (417)
Q Consensus 251 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~l~~~m~~~g~~p~~ 325 (417)
.|....+.+.+.- ..|+++.|..+++.+.... |+.. .-..=+....+.|+.+.+. .++........ +.
T Consensus 364 ~~~~i~L~~a~f~e--~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~ 436 (577)
T KOG1258|consen 364 KTPIIHLLEARFEE--SNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NN 436 (577)
T ss_pred CCcHHHHHHHHHHH--hhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--Cc
Confidence 3444444444332 3579999999999998733 4432 2223344556778888777 44444433222 21
Q ss_pred HHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014860 326 KSYNSLVSA-----LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG 374 (417)
Q Consensus 326 ~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 374 (417)
...+.+.-- +.-.++.+.|..++.++.+. ++++...|..+++-....+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 222222222 23357889999999999876 6777788888888665554
No 449
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.81 E-value=6.1e+02 Score=27.31 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 252 PDIFSLNSMIKGYILSNHVND-ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNS 330 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 330 (417)
++..+-.....++...+..+. +...+..+.. .+|...-...+.++...|....+...+..+.+. +|...=..
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~ 826 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQG 826 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHH
Confidence 444444455555555544332 2233333333 155666666666666666654443333333322 24444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 331 LVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.+.++.+.+. +++...+-.+.+ .|+...-...+.++.+.+....+...+....+..
T Consensus 827 Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 827 AARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 5555555554 334444444443 2455555555666655433334555555554443
No 450
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=34.64 E-value=1.6e+02 Score=20.63 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 324 SSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
.......++..+.. ++++++...+.++...|+.++.. ...+...+.+.
T Consensus 4 ~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~I-l~~l~~~l~~~ 51 (89)
T PF08542_consen 4 PPEVIEEILESCLN-GDFKEARKKLYELLVEGYSASDI-LKQLHEVLVES 51 (89)
T ss_dssp -HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HHHH-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHh
Confidence 44445555555544 47777777777777776644433 34444444444
No 451
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.42 E-value=1.4e+02 Score=19.70 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHHHH
Q 014860 302 AQGRTKNARELCDEMKR 318 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~ 318 (417)
+.|++-+|-++++++-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34455555555555443
No 452
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.40 E-value=3e+02 Score=23.57 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhcCC-ccchhhhhHHHHHHHHHHHHHCCCCC----CHHH-HHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860 208 RPSIRSYNILFTAFLSRGK-NTYINHVYMETIRCLFKQMVNDGIEP----DIFS-LNSMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 208 ~p~~~~~~~li~~~~~~g~-~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~-~~~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
++....+..|=-++.-... ....+...+..|.+.|.+..+..-.| +..+ .-.+-..+.+.|+.++|.+.|..+.
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444444444444433322 23445556788888888877543222 2222 2234455667888888888888887
Q ss_pred hhCC
Q 014860 282 VVYN 285 (417)
Q Consensus 282 ~~~~ 285 (417)
...+
T Consensus 193 ~~~~ 196 (214)
T PF09986_consen 193 GSKK 196 (214)
T ss_pred cCCC
Confidence 6433
No 453
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.88 E-value=1.4e+02 Score=20.92 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=18.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCh
Q 014860 366 VLDEICRRGRAGEAMKLLKELQNKNLIDG 394 (417)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~~~p~~ 394 (417)
+++-+.++.-.++|+++++-|.++|-.+.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 44555666666777777777777766443
No 454
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.37 E-value=1.3e+02 Score=30.24 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=0.0
Q ss_pred HcCCHhHHHHHHHHHHHCCC
Q 014860 372 RRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~ 391 (417)
+.|++.+|.+.+-.+...+.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~ 526 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPI 526 (566)
T ss_dssp --------------------
T ss_pred hhhhHHHHHHHHHHHHCCCC
Confidence 34777777777777776665
No 455
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.14 E-value=6.6e+02 Score=27.20 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 014860 292 SYDYLIHGLCAQG--RTKNARELCDEMKRK 319 (417)
Q Consensus 292 ~~~~li~~~~~~g--~~~~A~~l~~~m~~~ 319 (417)
-...+|.+|++.+ ++++|+.+..++++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3456666666666 666777777766654
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.13 E-value=2e+02 Score=21.23 Aligned_cols=63 Identities=10% Similarity=0.216 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR--TKNARELCDEMKRKGFV 322 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 322 (417)
...+|..|...|+.++|..-+.++... .--......++..+...++ -+.+..++..+.+.+..
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~---~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLP---SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-G---GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCC---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 345677788889999999999887541 1122233344444444322 33455666666666544
No 457
>PRK09857 putative transposase; Provisional
Probab=32.98 E-value=3.7e+02 Score=24.29 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
+..++.-..+.++.++..++++.+.+ . +........++..-+...|.-+++.++..+|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~-~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAE-R-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHH-h-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444444445555555555555543 1 1122222233334444444444444444444444443
No 458
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.70 E-value=1.8e+02 Score=20.69 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
++|+-....|+..|...|..+++.+.-.=-.+...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 44554445555555555555555544444455555555555443
No 459
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.53 E-value=6.4e+02 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRP 357 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 357 (417)
.....++++.. .++...++.+++++.+.|..
T Consensus 249 ~~I~~lidAL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 249 ALIDEAVDALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 33445555554 47788889999998888764
No 460
>PRK11619 lytic murein transglycosylase; Provisional
Probab=32.21 E-value=5.8e+02 Score=26.24 Aligned_cols=279 Identities=12% Similarity=0.027 Sum_probs=145.2
Q ss_pred ChhHHHHHHhcCCCCCCHHHH----HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 014860 87 DDTQFRCAVSELPPRFNNEEL----CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQ 162 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~~~~~l----l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 162 (417)
....+..-+...|+....+.| +..+.+.+++...++++ ... +.+...-.....+....|+-++|.+....
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~ 154 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEK--PKPVEARCNYYYAKWATGQQQEAWQGAKE 154 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344566666666665444433 33445667777776632 122 45666667777788888887777777777
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHhCCHHH--HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhh--h---hH
Q 014860 163 MLATPSFCGTEALYNTIIYFFAEARKLSR--AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINH--V---YM 235 (417)
Q Consensus 163 m~~~~~~~~~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~--~---~~ 235 (417)
+-..|. ......+.++..+.+.|.+.. ..+-++.....+ +...-..+...+. .+....+.. . ..
T Consensus 155 lW~~g~--~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~------~~~lA~~l~~~l~-~~~~~~a~a~~al~~~p 225 (644)
T PRK11619 155 LWLTGK--SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG------NTGLVTYLAKQLP-ADYQTIASALIKLQNDP 225 (644)
T ss_pred HhccCC--CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHhcC-hhHHHHHHHHHHHHHCH
Confidence 766665 345667777777776665433 223333333321 2222222222110 000000000 0 01
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 014860 236 ETIRCLFKQMVNDGIEPDIFSLNSMIKGYI--LSNHVNDALRIFHQMGVVYNYLPNS--FSYDYLIHGLCAQGRTKNARE 311 (417)
Q Consensus 236 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~ 311 (417)
..+..++. .+.++...-..++-++. ...+.+.|..++.......+..+.. ..+..+....+..+...+|.+
T Consensus 226 ~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~ 300 (644)
T PRK11619 226 NTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAK 300 (644)
T ss_pred HHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 11111111 11233322222222222 2345688888888875534433322 233444433344332455666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 312 LCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 312 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
.+....... .|......-+..-...++++.+...+..|.... .-...-.--+.+++...|+.++|...|++...
T Consensus 301 w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 301 WRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666543322 244455555666668889998888888886642 22334444566777778999999999988744
No 461
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.65 E-value=3.4e+02 Score=23.45 Aligned_cols=69 Identities=7% Similarity=-0.072 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 133 FRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALY--NTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 133 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
+.++..-++.|+--|.-...+.+|-+.|..-........|...+ ..-|+...+.|+++.|+.....+..
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 45555555555444443334444444444332222211333333 3556777888888888887776654
No 462
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.27 E-value=96 Score=23.45 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG 339 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 339 (417)
.++..+...+..-.|.++++.|.+.|...+..|.---|..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444444555566666655555555554444444444444
No 463
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=30.98 E-value=1.4e+02 Score=25.56 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 342 EETVKNLWEMIEKQRP-VDFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 342 ~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
+.-.++++..++.|++ .=++.|..+|+.-.-.-+.++..+++..++
T Consensus 189 ~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 189 DNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 3334444444444432 123456666654444445666666665543
No 464
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.97 E-value=5.2e+02 Score=25.33 Aligned_cols=45 Identities=29% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 236 ETIRCLFKQMV-NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 236 ~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
++....++... ..|+..+......++.. ..|+...+...++.+..
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWK 224 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 44444554433 45777777776666653 25777777777776543
No 465
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.69 E-value=1.1e+02 Score=24.00 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHH
Q 014860 369 EICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVL 404 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~ 404 (417)
.+-+.|-..+...++++|.+.|+ .+...|+.+++-+
T Consensus 118 ~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 118 LAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34456677777777777777777 5777777766654
No 466
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.53 E-value=3.4e+02 Score=23.12 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=45.3
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCC-----HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPS-----IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL 257 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~-----~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 257 (417)
+.+.|++++|..-|.+.... +++. ...|..-..++.+.+. ++.|++--....+.+. ......
T Consensus 105 ~F~ngdyeeA~skY~~Ale~----cp~~~~e~rsIly~Nraaa~iKl~k--------~e~aI~dcsKaiel~p-ty~kAl 171 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES----CPSTSTEERSILYSNRAAALIKLRK--------WESAIEDCSKAIELNP-TYEKAL 171 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh----CccccHHHHHHHHhhhHHHHHHhhh--------HHHHHHHHHhhHhcCc-hhHHHH
Confidence 34567777777777776663 3332 1234444445556665 6666655555554431 111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 258 NSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
.--..+|-+...+++|++-|..+.+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2223455556666666666666654
No 467
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=30.41 E-value=4.1e+02 Score=24.03 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHh
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWA 127 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~ 127 (417)
-..+++-+.+.++.+....+|+.+
T Consensus 21 gsr~lQ~~l~~~~~~~~~~i~~~l 44 (322)
T cd07920 21 GSRFLQQKLEEATPEEKELIFDEI 44 (322)
T ss_pred hhHHHHHHhccCCHHHHHHHHHHH
Confidence 344555555555666666666554
No 468
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.40 E-value=89 Score=16.32 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=7.3
Q ss_pred CHhHHHHHHHHHHHC
Q 014860 375 RAGEAMKLLKELQNK 389 (417)
Q Consensus 375 ~~~~A~~~~~~m~~~ 389 (417)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555555443
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.32 E-value=5.6e+02 Score=25.48 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=39.8
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHH---HHHHHHccCChhHHHHHHHHHHcC
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHI---MTRKLGAAKMYQEMDDVVNQMLAT 166 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~ 166 (417)
.....++.-|.+.+++++|+.++..|- .+. -....|.. +++.+.+..--++-+..++.+...
T Consensus 409 l~~~eL~~~yl~~~qi~eAi~lL~smn--W~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 409 LGLVELISQYLRCDQIEEAINLLLSMN--WNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhCC--ccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 445568888999999999999999882 211 12444444 445555665555666666666554
No 470
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.01 E-value=1.2e+02 Score=22.56 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=28.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860 331 LVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG 377 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 377 (417)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444445556777777777665666666666666666666533
No 471
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=29.65 E-value=2.1e+02 Score=20.44 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYM 199 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 199 (417)
++..|..++..-...+-+.+..+++...... .+...--.++..+++.++++-+..++..-
T Consensus 32 ~p~~l~~if~~~l~~~~L~~il~~l~~~~~~----~~~~~i~~~L~~L~~~~RF~l~~~fl~~~ 91 (94)
T PF13877_consen 32 PPDSLPKIFKNSLEPEFLSEILEALNEHFIP----EDPEFIFEILEALSKVKRFDLAVMFLSSS 91 (94)
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHcc----CCHHHHHHHHHHhcCCCCHHHHHHhcCHh
Confidence 4555555555544444444444444433221 23335556667777888888777666543
No 472
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.60 E-value=3.1e+02 Score=22.35 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=41.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 243 KQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTK 307 (417)
Q Consensus 243 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (417)
+.+++.|+..+..-. +++..+...++.=.|.++++.+.+ .+...+..|.-..|..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 335567776665444 455555555666788888888887 566666666666667777777654
No 473
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.55 E-value=5.7e+02 Score=25.33 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------------HHHHHHHHHhc
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS------------YNSLVSALALN 338 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~------------~~~li~~~~~~ 338 (417)
++..+.+....+..|+..+......++... .|++..+...++.+...+-..+... ...+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 444555555444356666666555555433 4677777777766554432222221 11223333 33
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 014860 339 GEVEETVKNLWEMIEKQR 356 (417)
Q Consensus 339 g~~~~A~~~~~~m~~~g~ 356 (417)
++.++|+.+++++...|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~ 272 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGF 272 (504)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 566666666666666554
No 474
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=7.4e+02 Score=26.65 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 268 (417)
-.+|.++-..|.+. -+++|.++++.|. |+.-++.+... .+-|.. -...
T Consensus 1163 r~da~klk~~me~q-----------k~tli~AL~kKg~-----------a~ak~e~l~g~-~e~dae---------ee~s 1210 (1304)
T KOG1114|consen 1163 RPDAVKLKKKMEKQ-----------KDTLIDALVKKGE-----------AFAKYEALKGH-KEQDAE---------EELS 1210 (1304)
T ss_pred cchHHHHHHHHHHH-----------HHHHHHHHHHhhh-----------HHhhhhhhccc-ccccch---------hhhh
Confidence 44577777777664 3678888888875 22222222211 111211 0112
Q ss_pred CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860 269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR-KGFVPSSKSYNSLVSALALNGEVEETVKN 347 (417)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 347 (417)
..+.-.+.|.++.+ .--.-|..++..-..-+...|++..|.+++.++.+ .|-.++...|..++..+...|--..+ .+
T Consensus 1211 ~ld~~~e~y~el~k-w~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~-t~ 1288 (1304)
T KOG1114|consen 1211 KLDSYNENYQELLK-WLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA-TF 1288 (1304)
T ss_pred hhhhHHHHHHHHHH-HhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH-HH
Confidence 23444445554443 22235667777777777788888888888877765 46667777777777777777754333 33
Q ss_pred HHHH
Q 014860 348 LWEM 351 (417)
Q Consensus 348 ~~~m 351 (417)
++.+
T Consensus 1289 ~~~~ 1292 (1304)
T KOG1114|consen 1289 VKNW 1292 (1304)
T ss_pred Hhhh
Confidence 3433
No 475
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.26 E-value=4e+02 Score=24.33 Aligned_cols=43 Identities=9% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 275 RIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 275 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
++++.+++ .++.|.-..|.-+.-.+...=.+.++..+|+.+..
T Consensus 264 EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34444443 44444444444444444444444445555554443
No 476
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.05 E-value=3.6e+02 Score=22.83 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=62.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN-----SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI 370 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 370 (417)
+...+...|++++|+.-++..... |....+. .|.+.....|..|+|+..++...+.+. .......--+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345577889999999988876643 2222333 344566788999999999887776532 222233444578
Q ss_pred HHcCCHhHHHHHHHHHHHCC
Q 014860 371 CRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (417)
...|+-++|..-|+.-...+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 88999999999999888876
No 477
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=28.90 E-value=6.8e+02 Score=26.06 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----------hcCCHHHHHHH
Q 014860 208 RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI-----------LSNHVNDALRI 276 (417)
Q Consensus 208 ~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-----------~~g~~~~a~~~ 276 (417)
-+.......++.++...|+ ++.|.+++..-.... -+.......++.+.. ..|.+..|.++
T Consensus 429 l~~~~~~~~~l~~LL~~~~--------f~la~~~~~~~~~~~-l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~ 499 (715)
T PF08314_consen 429 LSKDEIEEIFLEALLSSGR--------FSLAKSLYEESSSSP-LSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKAREC 499 (715)
T ss_dssp S-HHHHHHHHHHHHHHTT---------HHHHHHHHHHTT----TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC--------HHHHHHHHhcCCcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Confidence 3445667888999999999 998888887643221 233445555554442 24667888888
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHHHhc-----CCHHHHH
Q 014860 277 FHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY------NSLVSALALN-----GEVEETV 345 (417)
Q Consensus 277 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~------~~li~~~~~~-----g~~~~A~ 345 (417)
++-+.....-.+...-...||.+.....++.-. .+.|++..+.-. -.||.-+..+ .+.++-+
T Consensus 500 L~l~~~~~~~~~~~~~~~~Li~a~~~Ls~f~l~-------l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll 572 (715)
T PF08314_consen 500 LNLFPPTFPNSPRIQREKDLIKATHALSEFSLV-------LQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLL 572 (715)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTTS------------------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHH
T ss_pred HHhccCcCCccHHHHHHHHHHHHHHHHHhCCee-------cCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHH
Confidence 888765211123444556677766665554431 122222111111 1233333322 2456666
Q ss_pred HHHHHHHHcC---------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 346 KNLWEMIEKQ---------RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 346 ~~~~~m~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
++...|...| ..-...+....|++-...++++-|.+...++...
T Consensus 573 ~l~~~L~~~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~ 625 (715)
T PF08314_consen 573 DLANNLVLAGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDP 625 (715)
T ss_dssp HHHHHHHHH-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666665541 1112234555677777889999999998887766
No 478
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.83 E-value=4.8e+02 Score=24.25 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 307 KNARELCDEMKRKGFVPS----SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 307 ~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
+++..++.++... .|+ +.-|.++.+.....|.+++++.+|++.+..|-.|-...-.++++.+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4455555555443 233 23455566666666666666666666666666665555555555543
No 479
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.83 E-value=5.2e+02 Score=24.66 Aligned_cols=176 Identities=8% Similarity=0.069 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC---CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC-
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP---SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND- 248 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~- 248 (417)
...+.-+...|..+|+++.|++.|.+.+.. +.. .+..|-.+|..-.-.|+ |..+.....+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdY----CTs~khvInm~ln~i~VSI~~~n--------w~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDY----CTSAKHVINMCLNLILVSIYMGN--------WGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhh----hcchHHHHHHHHHHHHHHHhhcc--------hhhhhhHHHHHHhCc
Confidence 456778889999999999999999996653 222 23445566666677777 55555555444432
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-C----CCCCHHHHHHHHHHHHhcCCHHHHHHH---
Q 014860 249 --------GIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY-N----YLPNSFSYDYLIHGLCAQGRTKNAREL--- 312 (417)
Q Consensus 249 --------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~----~~~~~~~~~~li~~~~~~g~~~~A~~l--- 312 (417)
.+.+-...+..+.....+ ++..|.+.|-...... . +.|...+-...+.+++.-++-+--..+
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n 295 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKN 295 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcc
Confidence 123333444444433333 5566555554433211 1 234444444445555544443322222
Q ss_pred --HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 014860 313 --CDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITYRTVLD 368 (417)
Q Consensus 313 --~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~ 368 (417)
|+...+ .....+..+-.-| .+++...++++++++.. -+.|.+.+.-.+|+
T Consensus 296 ~~Fk~fle----l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 296 ESFKLFLE----LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hhhhhHHh----cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 222222 1233333333333 25677777777777654 23455555555544
No 480
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.63 E-value=3e+02 Score=21.77 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 341 VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 341 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34455555555554444444444444444444443
No 481
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.19 E-value=2.2e+02 Score=20.04 Aligned_cols=35 Identities=9% Similarity=0.013 Sum_probs=25.4
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
++.-+.+..- .++|+++++.|.+.| ..+...-+.|
T Consensus 37 V~D~L~rCdT--------~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 37 VIDFLRRCDT--------EEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred HHHHHHHhCc--------HHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4555667777 899999999999988 5555544433
No 482
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.10 E-value=3.7e+02 Score=22.70 Aligned_cols=174 Identities=9% Similarity=0.005 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860 206 ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF----SLNSMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 206 g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
|..++...++.++..+.+..-. ...++-+.++=.+....++..+-. ..-.=|+.|-..|||.+.-.+|-...
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s----~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~ 78 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQAS----KQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK 78 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCc----hhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH
Confidence 7778888888888877664430 001555555555666666555433 33334566777888888777776665
Q ss_pred hhCCCCC--CHHHHH-HHHHHHHhcC--CHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 282 VVYNYLP--NSFSYD-YLIHGLCAQG--RTKNARELCDEMKRKGFVPS-------SKSYNSLVSALALNGEVEETVKNLW 349 (417)
Q Consensus 282 ~~~~~~~--~~~~~~-~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~ 349 (417)
. |.+. +...+. .+..++.+.- +..--...|.+-......-| .+.=.+++-.|-+..+|.++.++++
T Consensus 79 ~--gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd 156 (233)
T PF14669_consen 79 M--GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLD 156 (233)
T ss_pred h--hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2221 111121 1112222211 11111112222222221111 1233567778888899999999999
Q ss_pred HHHHcCC--------------CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 350 EMIEKQR--------------PVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 350 ~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
.|.+..+ .+--...|.....+.+.|..+.|+.++++
T Consensus 157 ~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 157 KLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 9887422 23334567777889999999999999984
No 483
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.82 E-value=7.4e+02 Score=26.14 Aligned_cols=83 Identities=10% Similarity=0.043 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC------------CCHHHHHHHHHHHH
Q 014860 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC------------GTEALYNTIIYFFA 184 (417)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------------~~~~~~~~li~~~~ 184 (417)
.++..+.++++.+..++..+......+.+. ..|+...++.++++....+... .+...+..++..+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 445566666665666777788777776655 4788899999887766543211 2222333333433
Q ss_pred HhCCHHHHHHHHHHhHhC
Q 014860 185 EARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 185 ~~g~~~~a~~~~~~m~~~ 202 (417)
..++.++++.+++++...
T Consensus 257 ~~~d~~~~l~~~~~l~~~ 274 (830)
T PRK07003 257 AAGDGPEILAVADEMALR 274 (830)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 336666666666666654
No 484
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=27.65 E-value=1.9e+02 Score=27.70 Aligned_cols=158 Identities=10% Similarity=0.072 Sum_probs=87.3
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC---CCCC---CCHHHHHHHHHHH--
Q 014860 150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN---LECR---PSIRSYNILFTAF-- 221 (417)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~g~~---p~~~~~~~li~~~-- 221 (417)
...+++..+.++.+.+.+. .| ....-++.|.+.++++.|.+..++-.+.+. .|++ .....+..|+.+.
T Consensus 24 ~~~~~e~~~~l~~l~~~g~--~d--vl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~ 99 (428)
T cd00245 24 FPLLEEHIELLRTLQEEGA--AD--VLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDF 99 (428)
T ss_pred CCCHHHHHHHHHHHHhcCC--CC--eeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCC
Confidence 3466777788888877764 22 344567889999999999998888653321 1222 2333444455443
Q ss_pred ---HhcCCccchhhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHH-------HHHHhhhhCCCCC
Q 014860 222 ---LSRGKNTYINHVYMETIRCLFKQMVNDGIEPD---IFSLNSMIKGYILSNHVNDALR-------IFHQMGVVYNYLP 288 (417)
Q Consensus 222 ---~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~-------~~~~m~~~~~~~~ 288 (417)
.+.| ...+..+++-+...|+... ..+|+. -|.+.-.++++.+ +.....+ .|+..
T Consensus 100 PlqvRhG---------t~d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e-~gv~i 166 (428)
T cd00245 100 PVQVRHG---------TPDARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEE-NGVPI 166 (428)
T ss_pred CEeeccC---------CccHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHh-cCcee
Confidence 2223 3456666666666664322 234433 2333333444433 3333344 56666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 325 (417)
+..+|..+...++ .--+..|..+++.+...|...+.
T Consensus 167 n~E~fg~l~~~l~-pptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 167 NREPFGPLTGTLV-PPSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred cccCCcCcccCcC-CcHHHHHHHHHHHHHHccCCCCE
Confidence 6666655432221 12245677788877777655554
No 485
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.65 E-value=6.1e+02 Score=25.10 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=49.3
Q ss_pred HHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH------------HHHHHHHH
Q 014860 235 METIRCLFKQM-VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY------------DYLIHGLC 301 (417)
Q Consensus 235 ~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------------~~li~~~~ 301 (417)
.++..+.+.+. .+.|+..+......++... .|++..+...++.+.. .+-..+...- ..+++++
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~-~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLA-LGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Confidence 55566666554 4578888888887777654 5899999999998765 3322222211 1122222
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 014860 302 AQGRTKNARELCDEMKRKG 320 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g 320 (417)
..++.++|..+++++...|
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G 271 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDG 271 (504)
T ss_pred HcCCHHHHHHHHHHHHHcC
Confidence 3455666666666665554
No 486
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.52 E-value=6e+02 Score=24.99 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL--NGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEI 370 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~ 370 (417)
+.++.-+-..|-..+|..++..+... .+|+...|..+|..-.. +-+..-+.++++.|... | -|+..|.-.+.-=
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 34555555566666666666666554 34455555555543211 12255556666666554 5 3444454444333
Q ss_pred HHcCCHhHHHHHHHH
Q 014860 371 CRRGRAGEAMKLLKE 385 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~ 385 (417)
...|..+.+-.++.+
T Consensus 541 ~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWR 555 (568)
T ss_pred ccCCCcccccHHHHH
Confidence 345555554444433
No 487
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.20 E-value=3.8e+02 Score=22.58 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=8.5
Q ss_pred cCCHHHHHHHHHHHHH
Q 014860 338 NGEVEETVKNLWEMIE 353 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~ 353 (417)
.|+++.|.+.++-|.+
T Consensus 134 ~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 134 KGSFEEAERFLKFMEK 149 (204)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3555555555555544
No 488
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.13 E-value=7.4e+02 Score=25.88 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 330 SLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
.|+..|...+++.+|+.++-....
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 377888888888888887766553
No 489
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=27.10 E-value=4.2e+02 Score=24.43 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=52.8
Q ss_pred HHHH--HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860 178 TIIY--FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF 255 (417)
Q Consensus 178 ~li~--~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 255 (417)
.|+. ++.|..++-...++++.+.+. |...-.+++.+....+ .+..-..++.|.+.|+.++..
T Consensus 279 ~LmdfI~~lK~r~~y~~~kfvd~L~r~-------d~e~~~~L~~ai~~~~---------~~~~Ysa~R~~k~~g~~~~~~ 342 (354)
T TIGR01914 279 VLMDFIAYLKARDFYSWPKFVDFLARR-------DPEISLQLTDAILNGD---------EEAFYTALRELKKSGVRYDPE 342 (354)
T ss_pred HHHHHHHHHhhhhhcchHHHHHHHhcc-------ChHHHHHHHHHHHcCC---------hhHHHHHHHHHhhcCCCCCHH
Confidence 4444 355666677788888888875 4466777777776655 466677888899999999998
Q ss_pred HHHHHHHHHH
Q 014860 256 SLNSMIKGYI 265 (417)
Q Consensus 256 ~~~~li~~~~ 265 (417)
..+.+...++
T Consensus 343 ~v~~lae~l~ 352 (354)
T TIGR01914 343 QVDALAEILA 352 (354)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 490
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.94 E-value=5.7e+02 Score=24.51 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=141.4
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
+.++...| ..+++.+-..... .++...+.....++....+...+..+.+.+.. ++..+-..++.++.+.+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d-----~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE---ADEPGRVACAALALLAQEDALDLRSVLAVLQA-----GPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh---CCChhHHHHHHHHHhccCChHHHHHHHHHhcC-----CCHHHHHHHHHHHhcCC
Confidence 77777777 4567766555432 24555666655565544444334455555533 56667889999999888
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS 267 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 267 (417)
..+-...+..-+... +...-...+.++...+. + +.+.+....+ .+|..+-..-+.+++..
T Consensus 115 ~~~a~~~L~~~L~~~-------~p~vR~aal~al~~r~~---------~-~~~~L~~~L~---d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 115 GRQAEPWLEPLLAAS-------EPPGRAIGLAALGAHRH---------D-PGPALEAALT---HEDALVRAAALRALGEL 174 (410)
T ss_pred chHHHHHHHHHhcCC-------ChHHHHHHHHHHHhhcc---------C-hHHHHHHHhc---CCCHHHHHHHHHHHHhh
Confidence 877666555555432 44555566677776554 1 2223333333 56777777888888887
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860 268 NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKN 347 (417)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 347 (417)
+..+..- .+..+.. ..|..+-..-+.+....|. .+|...+...... ++....-.+.......| -+++.+.
T Consensus 175 ~~~~a~~-~L~~al~----d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~-~~~a~~~ 244 (410)
T TIGR02270 175 PRRLSES-TLRLYLR----DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAG-GPDAQAW 244 (410)
T ss_pred ccccchH-HHHHHHc----CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCC-chhHHHH
Confidence 7754433 3444443 2777778888888888888 6677666663332 22223333333333333 3366676
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 348 LWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 348 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
+..+.+. ++ +-...+.++.+.|+.+-+.-+.+.|.+
T Consensus 245 L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 245 LRELLQA---AA--TRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HHHHhcC---hh--hHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 6666654 22 566777888888888766666665543
No 491
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.47 E-value=3.4e+02 Score=22.93 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
....+.++..+...|+++.|.+.|.-+....++.... .|..=+..+.+.+.-....+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~-~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRS-LWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHh-cchHHHHHHHcCCCcchHHHHHHHHHH
No 492
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=26.28 E-value=6.5e+02 Score=24.95 Aligned_cols=87 Identities=9% Similarity=0.114 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------CCCCHHHHHHHH
Q 014860 269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG----------------FVPSSKSYNSLV 332 (417)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------------~~p~~~~~~~li 332 (417)
..++..+.+....+..|+..+......++. ...|++..|...++.+...+ -..+....-.|+
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPV 358 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p 358 (417)
.+..+ |+.++|+.+++++...|..|
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 493
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.27 E-value=97 Score=17.39 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
.++.|..+|+..... .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~-----hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV-----HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh-----CCCchHHHH
Confidence 578899999998874 577777643
No 494
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.27 E-value=1.8e+02 Score=20.12 Aligned_cols=14 Identities=0% Similarity=-0.052 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHH
Q 014860 265 ILSNHVNDALRIFH 278 (417)
Q Consensus 265 ~~~g~~~~a~~~~~ 278 (417)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444444
No 495
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.07 E-value=4.6e+02 Score=23.20 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKRKG-FVP-----SSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
.|+.-|.+.|+++.|-.++--+...+ ... +...-.-|+......++|+-+.++.+-+..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35555666666666655554443322 111 222333445555555555555555544443
No 496
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.81 E-value=1.1e+02 Score=23.11 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHh
Q 014860 366 VLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLED 406 (417)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~ 406 (417)
++..+...+..-.|.++++.|.+.+. ++..|.-.-|+.|.+
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 34444444444455555555555444 344443333444433
No 497
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=25.55 E-value=8.8e+02 Score=26.24 Aligned_cols=92 Identities=7% Similarity=0.007 Sum_probs=57.6
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH-------HHccC---ChhHHHHHHHHHHcCCCCCCCHHH
Q 014860 106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRK-------LGAAK---MYQEMDDVVNQMLATPSFCGTEAL 175 (417)
Q Consensus 106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-------~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~ 175 (417)
++=.++...+.++.|+..|+.+.. .++--.+-|..+.++ ....| .+++|..-|+.+...... |-...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 556 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRE--SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGA-PLEYL 556 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhh--cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCC-chHHH
Confidence 344555667889999999999853 344445555554432 22333 577788888887665543 43333
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
-=.-.|-+.|++++-++.+.-..++
T Consensus 557 --~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 557 --GKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred --hHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3334577888888887777766554
No 498
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.20 E-value=6.6e+02 Score=24.69 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 014860 120 CLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYM 199 (417)
Q Consensus 120 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 199 (417)
..+.++...+..|+..+......++.. ..|+...|..++++...... ...++..+ .+++
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~---~~it~~~V-------------~~~l--- 243 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTD---SKLTGVKI-------------RKMI--- 243 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCC---CCcCHHHH-------------HHHh---
Confidence 334444444445566666666555443 45677777777766543211 01111111 1111
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860 200 KNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF 255 (417)
Q Consensus 200 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 255 (417)
| ..+...+..++.+....+. ...|+.++++|.+.|..|...
T Consensus 244 ------g-~~~~~~~~~l~~si~~~d~--------~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ------G-YHGIEFLTSFIKSLIDPDN--------HSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ------C-CCCHHHHHHHHHHHHcCCc--------HHHHHHHHHHHHHcCCCHHHH
Confidence 1 1245555666666666555 567888888888888666544
No 499
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=25.19 E-value=83 Score=19.24 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=19.9
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 014860 126 WASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQM 163 (417)
Q Consensus 126 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 163 (417)
++.+...++-+...+..+...+-..+....+.++++++
T Consensus 4 ~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~a 41 (46)
T PF06855_consen 4 DIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRA 41 (46)
T ss_dssp HHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHH
T ss_pred hhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence 34445556666666666666665555555555555444
No 500
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.15 E-value=7.5e+02 Score=25.26 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=11.5
Q ss_pred CCHhHHHHHHHHHHHCCCC
Q 014860 374 GRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 374 g~~~~A~~~~~~m~~~~~p 392 (417)
|+..+|+.+++++...|.+
T Consensus 261 ~~~~~al~ll~~Ll~~g~~ 279 (614)
T PRK14971 261 GKVSDSLLLFDEILNKGFD 279 (614)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4566666666666666553
Done!