Query 014860
Match_columns 417
No_of_seqs 473 out of 2141
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.9E-35 1.3E-39 283.0 23.9 216 154-373 7-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.8E-34 9.5E-39 277.1 25.6 206 190-407 7-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 4.2E-25 1.4E-29 219.4 30.8 286 99-404 303-594 (597)
4 2xpi_A Anaphase-promoting comp 99.9 4.8E-25 1.7E-29 219.0 28.6 281 108-409 279-565 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.1E-19 7.2E-24 168.7 35.7 296 91-407 56-352 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.9E-19 1.3E-23 166.8 34.9 299 87-406 86-385 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5.7E-19 1.9E-23 168.9 32.8 282 103-407 28-342 (450)
8 2y4t_A DNAJ homolog subfamily 99.8 1.1E-17 3.6E-22 160.0 35.0 294 87-402 45-371 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.8 4.8E-21 1.6E-25 190.7 11.0 128 251-378 124-254 (1134)
10 3spa_A Mtrpol, DNA-directed RN 99.8 9.9E-21 3.4E-25 188.4 10.7 154 172-339 126-286 (1134)
11 3hym_B Cell division cycle pro 99.8 3.5E-17 1.2E-21 149.3 32.6 289 102-410 23-320 (330)
12 3ieg_A DNAJ homolog subfamily 99.8 3.7E-15 1.3E-19 137.3 36.9 281 104-407 6-319 (359)
13 1fch_A Peroxisomal targeting s 99.8 2.6E-16 8.9E-21 146.1 27.7 282 112-410 36-346 (368)
14 3ieg_A DNAJ homolog subfamily 99.8 8.2E-15 2.8E-19 135.0 37.5 299 88-405 23-351 (359)
15 4eqf_A PEX5-related protein; a 99.8 1.2E-16 4.3E-21 148.4 25.0 264 102-385 66-352 (365)
16 1fch_A Peroxisomal targeting s 99.8 4.9E-16 1.7E-20 144.2 27.7 266 101-385 64-355 (368)
17 3cv0_A Peroxisome targeting si 99.8 2.5E-16 8.5E-21 143.5 25.1 266 102-387 22-313 (327)
18 2gw1_A Mitochondrial precursor 99.7 9.4E-16 3.2E-20 148.8 27.5 285 88-388 26-400 (514)
19 4eqf_A PEX5-related protein; a 99.7 6.6E-16 2.3E-20 143.5 23.5 255 136-408 64-341 (365)
20 3hym_B Cell division cycle pro 99.7 1.2E-14 4.1E-19 132.4 30.8 272 87-377 41-322 (330)
21 2gw1_A Mitochondrial precursor 99.7 2.8E-15 9.5E-20 145.5 27.9 286 104-407 9-385 (514)
22 3mkr_A Coatomer subunit epsilo 99.7 1.7E-14 5.9E-19 129.6 27.7 253 109-391 7-266 (291)
23 3fp2_A TPR repeat-containing p 99.7 6E-14 2.1E-18 137.0 31.8 75 87-163 44-119 (537)
24 3fp2_A TPR repeat-containing p 99.7 5.2E-14 1.8E-18 137.4 30.3 269 104-390 28-408 (537)
25 3cv0_A Peroxisome targeting si 99.7 4E-14 1.4E-18 128.8 27.4 253 136-407 20-299 (327)
26 1b89_A Protein (clathrin heavy 99.7 3.3E-16 1.1E-20 145.1 13.1 224 99-372 30-253 (449)
27 3mkr_A Coatomer subunit epsilo 99.6 5.6E-14 1.9E-18 126.3 24.4 239 145-409 7-249 (291)
28 3uq3_A Heat shock protein STI1 99.6 1.7E-13 5.7E-18 120.1 24.9 229 137-390 5-237 (258)
29 1b89_A Protein (clathrin heavy 99.6 8.2E-15 2.8E-19 135.8 13.8 240 112-406 14-253 (449)
30 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-14 1.6E-18 125.1 17.9 249 112-383 16-269 (275)
31 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-12 5.5E-17 113.7 27.5 200 137-353 37-237 (252)
32 2vq2_A PILW, putative fimbrial 99.6 2.1E-12 7.2E-17 110.5 27.6 204 172-390 7-212 (225)
33 3uq3_A Heat shock protein STI1 99.6 6E-13 2.1E-17 116.5 23.3 224 104-354 8-236 (258)
34 2pl2_A Hypothetical conserved 99.6 4.9E-13 1.7E-17 114.7 21.7 200 134-352 2-212 (217)
35 2ho1_A Type 4 fimbrial biogene 99.6 2.9E-12 9.9E-17 112.1 27.0 202 173-390 37-239 (252)
36 3u4t_A TPR repeat-containing p 99.6 2.7E-12 9.1E-17 113.6 26.4 250 139-403 5-264 (272)
37 1ouv_A Conserved hypothetical 99.6 2.2E-11 7.4E-16 108.1 32.2 225 136-391 5-253 (273)
38 2pl2_A Hypothetical conserved 99.6 1E-12 3.4E-17 112.7 22.6 200 171-388 3-213 (217)
39 2vq2_A PILW, putative fimbrial 99.6 3.1E-12 1.1E-16 109.4 25.7 211 135-363 6-218 (225)
40 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4E-17 113.8 22.5 200 174-390 24-223 (243)
41 2h6f_A Protein farnesyltransfe 99.5 3.3E-12 1.1E-16 118.8 25.6 255 136-410 96-369 (382)
42 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.7E-17 113.3 21.4 201 136-354 22-222 (243)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.9E-12 6.4E-17 114.7 22.5 236 148-401 16-256 (275)
44 3u4t_A TPR repeat-containing p 99.5 1.6E-11 5.4E-16 108.6 24.6 247 104-368 6-263 (272)
45 1ouv_A Conserved hypothetical 99.5 1.4E-10 4.9E-15 102.7 30.8 220 104-355 9-252 (273)
46 2h6f_A Protein farnesyltransfe 99.5 1.9E-11 6.5E-16 113.7 25.1 246 104-372 100-365 (382)
47 2xm6_A Protein corresponding t 99.4 3.1E-09 1.1E-13 102.6 39.2 256 100-390 74-361 (490)
48 2xm6_A Protein corresponding t 99.4 4.3E-09 1.5E-13 101.6 39.7 270 100-406 38-340 (490)
49 2ond_A Cleavage stimulation fa 99.4 1.9E-10 6.6E-15 104.0 27.7 217 118-354 33-270 (308)
50 2ond_A Cleavage stimulation fa 99.4 7.5E-10 2.6E-14 100.1 30.0 219 154-391 33-272 (308)
51 4a1s_A PINS, partner of inscut 99.4 1.6E-11 5.5E-16 115.5 19.6 282 106-390 53-373 (411)
52 3sf4_A G-protein-signaling mod 99.4 2.9E-11 1E-15 113.2 20.5 298 105-407 13-360 (406)
53 3ro2_A PINS homolog, G-protein 99.4 2.3E-11 7.9E-16 110.4 19.1 278 107-389 11-332 (338)
54 4abn_A Tetratricopeptide repea 99.4 4.1E-11 1.4E-15 115.3 21.3 216 117-351 84-318 (474)
55 2ooe_A Cleavage stimulation fa 99.4 4.4E-09 1.5E-13 102.6 34.5 164 237-405 304-474 (530)
56 2ooe_A Cleavage stimulation fa 99.4 3.4E-09 1.2E-13 103.4 33.4 124 91-222 2-132 (530)
57 3nf1_A KLC 1, kinesin light ch 99.3 6.7E-11 2.3E-15 106.4 19.3 209 172-388 26-306 (311)
58 3nf1_A KLC 1, kinesin light ch 99.3 4.9E-11 1.7E-15 107.3 17.5 212 134-354 24-307 (311)
59 3vtx_A MAMA; tetratricopeptide 99.3 7.2E-10 2.5E-14 91.8 23.2 167 172-354 4-170 (184)
60 4abn_A Tetratricopeptide repea 99.3 1.1E-10 3.6E-15 112.4 20.5 216 152-386 83-318 (474)
61 1xi4_A Clathrin heavy chain; a 99.3 1.2E-09 4E-14 113.1 28.6 254 101-406 1049-1326(1630)
62 3vtx_A MAMA; tetratricopeptide 99.3 1E-09 3.5E-14 90.9 23.2 168 210-390 4-171 (184)
63 1hz4_A MALT regulatory protein 99.3 2.8E-09 9.5E-14 98.9 27.0 272 108-388 21-321 (373)
64 3as5_A MAMA; tetratricopeptide 99.3 1.3E-09 4.4E-14 89.7 21.5 164 174-353 9-172 (186)
65 4g1t_A Interferon-induced prot 99.3 7.2E-09 2.5E-13 99.2 29.3 271 103-391 53-365 (472)
66 1xi4_A Clathrin heavy chain; a 99.2 1.1E-08 3.8E-13 106.0 30.9 235 105-404 1026-1260(1630)
67 3as5_A MAMA; tetratricopeptide 99.2 1.7E-09 6E-14 88.9 20.6 164 138-318 9-172 (186)
68 3sf4_A G-protein-signaling mod 99.2 1.3E-10 4.4E-15 108.8 14.4 282 88-377 29-364 (406)
69 4a1s_A PINS, partner of inscut 99.2 6E-10 2.1E-14 104.7 18.8 260 138-407 49-356 (411)
70 4g1t_A Interferon-induced prot 99.2 1.4E-09 4.7E-14 104.2 21.1 265 114-397 151-469 (472)
71 3ro2_A PINS homolog, G-protein 99.2 4.8E-10 1.6E-14 101.6 16.4 258 89-354 26-332 (338)
72 3ulq_A Response regulator aspa 99.2 2.4E-09 8.2E-14 99.8 20.8 235 108-353 110-367 (383)
73 3edt_B KLC 2, kinesin light ch 99.1 9.2E-10 3.1E-14 97.3 15.5 210 171-389 41-281 (283)
74 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.6E-14 96.9 15.7 161 186-354 14-198 (283)
75 3ulq_A Response regulator aspa 99.1 2.9E-09 1E-13 99.2 18.8 235 143-388 109-367 (383)
76 3q15_A PSP28, response regulat 99.1 1.9E-08 6.6E-13 93.5 23.8 231 111-353 111-364 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.1 5.9E-09 2E-13 104.6 20.3 167 135-318 7-173 (723)
78 4gyw_A UDP-N-acetylglucosamine 99.1 1.1E-08 3.9E-13 102.6 21.2 166 210-388 8-173 (723)
79 3q15_A PSP28, response regulat 99.0 5E-08 1.7E-12 90.7 23.3 234 144-388 108-364 (378)
80 4i17_A Hypothetical protein; T 99.0 9E-08 3.1E-12 82.0 22.6 175 209-396 5-216 (228)
81 4i17_A Hypothetical protein; T 99.0 1.1E-07 3.8E-12 81.4 22.2 195 135-354 5-209 (228)
82 3mv2_B Coatomer subunit epsilo 99.0 2.1E-07 7.2E-12 82.6 23.4 243 111-391 23-284 (310)
83 1hz4_A MALT regulatory protein 99.0 2.5E-07 8.5E-12 85.6 25.4 239 142-389 19-282 (373)
84 2fo7_A Synthetic consensus TPR 99.0 5.8E-08 2E-12 74.9 17.7 127 176-317 4-130 (136)
85 2fo7_A Synthetic consensus TPR 99.0 4.8E-08 1.6E-12 75.4 16.9 129 139-282 3-131 (136)
86 3e4b_A ALGK; tetratricopeptide 98.9 1.9E-07 6.5E-12 89.0 23.0 266 88-392 58-354 (452)
87 1qqe_A Vesicular transport pro 98.9 1.1E-07 3.9E-12 85.0 19.3 212 152-389 32-269 (292)
88 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.4E-12 84.0 19.1 181 120-319 85-282 (310)
89 1qqe_A Vesicular transport pro 98.9 1.6E-07 5.5E-12 84.0 18.3 203 104-317 40-267 (292)
90 3qky_A Outer membrane assembly 98.9 2.5E-07 8.7E-12 81.0 19.3 186 171-390 13-225 (261)
91 3qky_A Outer membrane assembly 98.8 3.6E-07 1.2E-11 80.1 19.7 213 134-378 12-250 (261)
92 3e4b_A ALGK; tetratricopeptide 98.8 1.5E-06 5.2E-11 82.7 23.2 260 100-392 105-390 (452)
93 3urz_A Uncharacterized protein 98.8 6.8E-07 2.3E-11 75.5 18.4 124 179-318 60-185 (208)
94 3qou_A Protein YBBN; thioredox 98.8 4.8E-07 1.7E-11 80.6 18.2 164 136-315 116-280 (287)
95 2pzi_A Probable serine/threoni 98.8 1.5E-07 5E-12 94.6 16.0 173 112-305 402-583 (681)
96 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.5E-06 5E-11 74.4 19.4 182 137-354 4-213 (225)
97 3rjv_A Putative SEL1 repeat pr 98.7 4.1E-06 1.4E-10 70.9 21.7 178 191-392 4-200 (212)
98 2r5s_A Uncharacterized protein 98.7 2.3E-07 7.9E-12 76.1 13.5 60 291-350 109-169 (176)
99 3dra_A Protein farnesyltransfe 98.7 1.4E-05 4.8E-10 71.4 25.9 224 111-353 43-286 (306)
100 2pzi_A Probable serine/threoni 98.7 2E-07 6.8E-12 93.6 15.4 173 148-340 402-583 (681)
101 2vsy_A XCC0866; transferase, g 98.7 7.1E-07 2.4E-11 87.7 19.1 152 235-391 5-159 (568)
102 3dra_A Protein farnesyltransfe 98.7 7.2E-06 2.5E-10 73.2 23.8 234 150-401 46-300 (306)
103 3rjv_A Putative SEL1 repeat pr 98.7 5E-06 1.7E-10 70.3 21.7 176 155-355 4-198 (212)
104 2vsy_A XCC0866; transferase, g 98.7 1.1E-06 3.7E-11 86.4 20.1 153 114-283 2-157 (568)
105 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.7E-06 9.2E-11 72.7 20.0 170 210-391 3-215 (225)
106 3urz_A Uncharacterized protein 98.7 1.7E-06 5.8E-11 73.0 18.0 164 177-362 8-192 (208)
107 3qou_A Protein YBBN; thioredox 98.7 3E-06 1E-10 75.4 19.9 159 212-385 118-280 (287)
108 2ifu_A Gamma-SNAP; membrane fu 98.6 1.2E-06 4E-11 78.9 16.6 230 114-382 4-254 (307)
109 2r5s_A Uncharacterized protein 98.6 1.2E-06 4.2E-11 71.7 15.2 163 213-388 8-172 (176)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.9E-06 1.7E-10 70.1 18.7 143 257-405 9-167 (213)
111 4ga2_A E3 SUMO-protein ligase 98.6 2.7E-07 9.2E-12 73.6 9.7 106 113-226 9-114 (150)
112 4e6h_A MRNA 3'-END-processing 98.6 6E-06 2E-10 82.1 21.2 220 154-390 326-571 (679)
113 2ifu_A Gamma-SNAP; membrane fu 98.6 1E-06 3.4E-11 79.4 14.4 205 114-347 29-254 (307)
114 3u3w_A Transcriptional activat 98.6 2.5E-05 8.4E-10 69.6 23.3 203 130-352 39-264 (293)
115 4e6h_A MRNA 3'-END-processing 98.5 7.6E-06 2.6E-10 81.3 21.1 236 118-370 326-584 (679)
116 2qfc_A PLCR protein; TPR, HTH, 98.5 2.7E-05 9.1E-10 69.3 22.6 167 174-352 76-264 (293)
117 4ga2_A E3 SUMO-protein ligase 98.5 7.8E-07 2.7E-11 70.9 11.1 140 263-407 6-147 (150)
118 2qfc_A PLCR protein; TPR, HTH, 98.5 2.3E-05 7.7E-10 69.8 21.9 170 211-388 75-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.5 9.8E-06 3.3E-10 68.1 18.1 130 105-249 10-151 (213)
120 1na0_A Designed protein CTPR3; 98.5 8.2E-06 2.8E-10 61.6 15.9 98 291-390 10-107 (125)
121 3q7a_A Farnesyltransferase alp 98.5 0.0001 3.4E-09 66.7 25.0 189 107-306 60-258 (349)
122 1a17_A Serine/threonine protei 98.5 8.6E-06 2.9E-10 65.3 16.3 93 176-281 16-108 (166)
123 3gw4_A Uncharacterized protein 98.5 4E-06 1.4E-10 69.8 14.5 160 148-317 3-174 (203)
124 1a17_A Serine/threonine protei 98.5 9.2E-06 3.1E-10 65.1 16.1 129 138-281 14-144 (166)
125 1na0_A Designed protein CTPR3; 98.5 1.1E-05 3.7E-10 60.9 15.6 96 138-247 10-105 (125)
126 3u3w_A Transcriptional activat 98.4 1.2E-05 4.1E-10 71.6 17.9 166 108-281 82-264 (293)
127 4f3v_A ESX-1 secretion system 98.4 3.4E-05 1.2E-09 67.5 19.2 202 149-366 18-247 (282)
128 3q7a_A Farnesyltransferase alp 98.4 0.00016 5.4E-09 65.4 24.2 234 150-401 67-344 (349)
129 4gco_A Protein STI-1; structur 98.4 1.5E-05 5.3E-10 61.1 15.3 107 291-399 14-120 (126)
130 2lni_A Stress-induced-phosphop 98.4 1.3E-05 4.5E-10 61.4 14.6 100 135-248 14-113 (133)
131 3gw4_A Uncharacterized protein 98.4 5.4E-06 1.8E-10 69.0 13.0 158 184-353 3-175 (203)
132 2vyi_A SGTA protein; chaperone 98.4 1.5E-05 5E-10 60.7 14.3 95 139-247 14-108 (131)
133 2c2l_A CHIP, carboxy terminus 98.3 1.9E-06 6.6E-11 76.4 10.2 193 136-353 3-198 (281)
134 2lni_A Stress-induced-phosphop 98.3 2.2E-05 7.4E-10 60.1 14.7 100 289-390 15-114 (133)
135 2e2e_A Formate-dependent nitri 98.3 5.3E-06 1.8E-10 67.7 11.4 121 113-249 22-145 (177)
136 4gco_A Protein STI-1; structur 98.3 2.8E-05 9.7E-10 59.6 14.6 99 137-249 13-111 (126)
137 2vyi_A SGTA protein; chaperone 98.3 5.1E-05 1.8E-09 57.6 16.1 117 255-375 13-129 (131)
138 1elw_A TPR1-domain of HOP; HOP 98.3 6.2E-05 2.1E-09 56.0 15.9 107 290-398 4-110 (118)
139 2e2e_A Formate-dependent nitri 98.3 2E-05 6.7E-10 64.2 13.8 119 149-282 22-143 (177)
140 3gyz_A Chaperone protein IPGC; 98.2 8.5E-06 2.9E-10 64.8 10.7 104 136-255 35-138 (151)
141 4f3v_A ESX-1 secretion system 98.2 4.8E-05 1.6E-09 66.6 16.3 200 113-331 18-247 (282)
142 2vgx_A Chaperone SYCD; alterna 98.2 1.4E-05 4.7E-10 63.3 11.9 95 174-281 22-116 (148)
143 1p5q_A FKBP52, FK506-binding p 98.2 4.3E-05 1.5E-09 69.6 16.5 134 253-388 146-293 (336)
144 3gyz_A Chaperone protein IPGC; 98.2 2.4E-05 8.2E-10 62.1 12.9 96 292-389 38-133 (151)
145 2dba_A Smooth muscle cell asso 98.2 9E-05 3.1E-09 57.8 16.2 107 289-398 27-137 (148)
146 3upv_A Heat shock protein STI1 98.2 5.6E-05 1.9E-09 57.6 14.3 98 291-390 5-102 (126)
147 2c2l_A CHIP, carboxy terminus 98.2 0.00012 4.2E-09 64.7 18.3 193 171-389 2-199 (281)
148 4b4t_Q 26S proteasome regulato 98.2 0.00015 5.1E-09 68.1 19.5 198 146-353 13-244 (434)
149 2vgx_A Chaperone SYCD; alterna 98.2 5.4E-05 1.8E-09 59.8 13.9 97 291-389 22-118 (148)
150 1p5q_A FKBP52, FK506-binding p 98.2 5.2E-05 1.8E-09 69.0 15.6 150 150-317 126-292 (336)
151 1elw_A TPR1-domain of HOP; HOP 98.2 0.00013 4.4E-09 54.2 15.4 99 137-249 4-102 (118)
152 2uy1_A Cleavage stimulation fa 98.1 0.0012 4.2E-08 63.2 25.4 47 190-248 196-242 (493)
153 4b4t_Q 26S proteasome regulato 98.1 0.00014 4.9E-09 68.2 18.6 201 180-388 11-244 (434)
154 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00011 3.7E-09 59.0 15.0 98 254-354 11-108 (164)
155 2fbn_A 70 kDa peptidylprolyl i 98.1 5.6E-06 1.9E-10 69.0 6.9 157 146-317 13-184 (198)
156 2kck_A TPR repeat; tetratricop 98.1 4.4E-05 1.5E-09 56.2 11.3 99 291-391 7-108 (112)
157 2xcb_A PCRH, regulatory protei 98.1 8.3E-05 2.8E-09 58.1 13.2 96 292-389 20-115 (142)
158 3upv_A Heat shock protein STI1 98.1 0.00012 4.2E-09 55.7 13.9 98 137-248 4-101 (126)
159 1elr_A TPR2A-domain of HOP; HO 98.1 5.2E-05 1.8E-09 57.6 11.7 114 137-263 4-121 (131)
160 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00013 4.4E-09 58.5 14.6 97 173-282 11-107 (164)
161 3q49_B STIP1 homology and U bo 98.1 0.00017 5.6E-09 55.6 14.6 100 288-389 7-106 (137)
162 1elr_A TPR2A-domain of HOP; HO 98.0 0.00025 8.5E-09 53.7 15.3 97 292-389 6-108 (131)
163 3q49_B STIP1 homology and U bo 98.0 0.00017 5.8E-09 55.5 14.1 101 134-248 6-106 (137)
164 2dba_A Smooth muscle cell asso 98.0 0.00035 1.2E-08 54.3 16.0 97 136-247 27-127 (148)
165 3dss_A Geranylgeranyl transfer 98.0 0.0057 2E-07 54.9 25.5 232 155-404 48-319 (331)
166 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00018 6.1E-09 59.7 14.9 135 254-390 38-187 (198)
167 2kck_A TPR repeat; tetratricop 98.0 4.3E-05 1.5E-09 56.3 10.0 96 139-248 8-106 (112)
168 4gcn_A Protein STI-1; structur 98.0 0.00012 4.2E-09 56.0 12.5 110 137-259 8-121 (127)
169 2xcb_A PCRH, regulatory protei 98.0 0.00013 4.3E-09 57.0 12.5 99 136-248 17-115 (142)
170 1hxi_A PEX5, peroxisome target 98.0 6.6E-05 2.2E-09 57.0 10.3 95 104-202 20-114 (121)
171 3ro3_A PINS homolog, G-protein 98.0 9.8E-05 3.3E-09 58.3 11.7 134 255-388 10-157 (164)
172 4gcn_A Protein STI-1; structur 97.9 0.00013 4.6E-09 55.8 11.8 106 104-216 11-121 (127)
173 3ro3_A PINS homolog, G-protein 97.9 0.00013 4.5E-09 57.6 11.8 136 211-354 9-158 (164)
174 3k9i_A BH0479 protein; putativ 97.9 1.8E-05 6.3E-10 59.6 6.1 104 303-407 3-110 (117)
175 3dss_A Geranylgeranyl transfer 97.9 0.0094 3.2E-07 53.5 24.4 221 113-354 41-304 (331)
176 1hxi_A PEX5, peroxisome target 97.9 0.00022 7.5E-09 54.1 11.6 94 294-389 21-114 (121)
177 2uy1_A Cleavage stimulation fa 97.8 0.012 4.2E-07 56.3 26.1 46 236-282 196-241 (493)
178 2xev_A YBGF; tetratricopeptide 97.8 0.00059 2E-08 51.8 13.0 99 104-202 5-105 (129)
179 2xev_A YBGF; tetratricopeptide 97.7 0.0014 4.7E-08 49.6 14.5 93 144-248 9-105 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00065 2.2E-08 64.6 15.1 133 254-389 268-415 (457)
181 3rkv_A Putative peptidylprolyl 97.7 0.00066 2.3E-08 54.1 12.8 64 326-390 64-127 (162)
182 1wao_1 Serine/threonine protei 97.7 0.00013 4.4E-09 69.8 9.9 118 146-278 15-134 (477)
183 3k9i_A BH0479 protein; putativ 97.7 0.00012 4E-09 55.1 7.4 86 150-247 3-89 (117)
184 1wao_1 Serine/threonine protei 97.6 0.00029 9.9E-09 67.4 11.3 121 179-314 12-134 (477)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00096 3.3E-08 63.4 14.6 125 137-274 268-405 (457)
186 1ihg_A Cyclophilin 40; ppiase 97.6 0.00077 2.6E-08 62.1 13.2 121 140-273 226-360 (370)
187 3n71_A Histone lysine methyltr 97.6 0.00036 1.2E-08 66.6 11.0 129 111-247 319-463 (490)
188 1ihg_A Cyclophilin 40; ppiase 97.5 0.00084 2.9E-08 61.8 12.3 117 104-226 226-356 (370)
189 3rkv_A Putative peptidylprolyl 97.5 0.0017 5.8E-08 51.7 12.7 99 138-248 12-126 (162)
190 3n71_A Histone lysine methyltr 97.4 0.00092 3.2E-08 63.8 11.8 141 134-282 296-463 (490)
191 1klx_A Cysteine rich protein B 97.4 0.0026 8.9E-08 49.3 12.3 109 235-355 11-127 (138)
192 1klx_A Cysteine rich protein B 97.4 0.016 5.6E-07 44.6 16.2 114 267-392 8-129 (138)
193 2l6j_A TPR repeat-containing p 97.3 0.00025 8.7E-09 52.2 5.3 91 289-382 3-100 (111)
194 2kat_A Uncharacterized protein 97.3 0.0027 9.3E-08 47.1 10.9 78 309-388 4-81 (115)
195 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00086 2.9E-08 60.9 9.3 148 173-354 179-328 (338)
196 2kat_A Uncharacterized protein 97.3 0.0024 8.1E-08 47.4 10.2 80 119-202 3-82 (115)
197 3ma5_A Tetratricopeptide repea 97.3 0.0026 9E-08 46.0 9.9 63 325-388 7-69 (100)
198 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0011 3.6E-08 60.3 9.2 146 138-318 180-327 (338)
199 1dce_A Protein (RAB geranylger 97.2 0.043 1.5E-06 53.4 20.5 171 152-340 44-241 (567)
200 2hr2_A Hypothetical protein; a 97.2 0.008 2.7E-07 47.5 12.3 95 174-281 12-129 (159)
201 2hr2_A Hypothetical protein; a 97.1 0.0075 2.5E-07 47.6 11.9 113 140-260 14-148 (159)
202 1na3_A Designed protein CTPR2; 97.1 0.0092 3.1E-07 41.6 11.4 61 292-353 11-71 (91)
203 1na3_A Designed protein CTPR2; 97.1 0.0061 2.1E-07 42.6 10.3 83 136-224 8-90 (91)
204 1dce_A Protein (RAB geranylger 97.1 0.051 1.7E-06 52.9 19.8 167 235-406 45-238 (567)
205 2l6j_A TPR repeat-containing p 97.1 0.0054 1.8E-07 44.7 10.2 65 136-202 3-67 (111)
206 3ma5_A Tetratricopeptide repea 97.0 0.0048 1.6E-07 44.6 8.8 64 289-353 6-69 (100)
207 3mkq_A Coatomer beta'-subunit; 96.9 0.014 4.8E-07 59.4 15.3 30 253-282 680-709 (814)
208 1zu2_A Mitochondrial import re 96.9 0.0022 7.5E-08 50.6 6.9 99 113-220 14-133 (158)
209 3mkq_A Coatomer beta'-subunit; 96.8 0.039 1.3E-06 56.1 16.9 154 111-317 609-763 (814)
210 3ly7_A Transcriptional activat 96.6 0.076 2.6E-06 48.0 15.3 140 102-258 195-347 (372)
211 3qww_A SET and MYND domain-con 96.6 0.017 5.8E-07 54.1 11.3 87 302-388 310-410 (433)
212 3qwp_A SET and MYND domain-con 96.5 0.017 5.7E-07 54.1 11.0 93 296-388 293-399 (429)
213 1zu2_A Mitochondrial import re 96.5 0.0093 3.2E-07 47.0 7.8 99 148-263 13-133 (158)
214 3mkq_B Coatomer subunit alpha; 96.4 0.26 8.8E-06 39.4 17.5 127 147-316 15-141 (177)
215 1wy6_A Hypothetical protein ST 96.4 0.21 7.1E-06 37.7 14.9 135 235-392 23-157 (172)
216 3ly7_A Transcriptional activat 96.3 0.088 3E-06 47.6 13.8 145 208-363 191-346 (372)
217 3qwp_A SET and MYND domain-con 96.0 0.06 2.1E-06 50.4 11.9 95 180-282 294-399 (429)
218 3mkq_B Coatomer subunit alpha; 95.9 0.52 1.8E-05 37.6 16.9 130 218-386 12-141 (177)
219 3qww_A SET and MYND domain-con 95.8 0.044 1.5E-06 51.3 10.0 89 186-282 311-410 (433)
220 2kc7_A BFR218_protein; tetratr 95.7 0.1 3.5E-06 36.9 9.8 57 297-354 7-64 (99)
221 2kc7_A BFR218_protein; tetratr 95.7 0.044 1.5E-06 38.9 7.6 54 263-318 9-63 (99)
222 1wy6_A Hypothetical protein ST 95.6 0.51 1.8E-05 35.7 15.3 60 260-321 97-156 (172)
223 3bee_A Putative YFRE protein; 95.5 0.11 3.8E-06 36.8 8.9 67 134-202 3-72 (93)
224 3u64_A Protein TP_0956; tetrat 95.4 1.1 3.9E-05 38.8 16.3 117 210-331 153-283 (301)
225 1pc2_A Mitochondria fission pr 95.2 0.26 9E-06 38.3 10.8 83 307-391 15-102 (152)
226 3bee_A Putative YFRE protein; 95.2 0.35 1.2E-05 34.1 10.7 49 341-390 25-73 (93)
227 2v5f_A Prolyl 4-hydroxylase su 94.8 0.17 5.7E-06 36.6 8.5 68 135-202 3-75 (104)
228 2v5f_A Prolyl 4-hydroxylase su 94.8 0.43 1.5E-05 34.3 10.5 66 289-354 4-75 (104)
229 3u64_A Protein TP_0956; tetrat 93.8 0.42 1.4E-05 41.5 9.9 108 152-280 178-295 (301)
230 4b4t_P 26S proteasome regulato 92.6 6.6 0.00023 36.6 20.0 150 257-406 140-305 (445)
231 1pc2_A Mitochondria fission pr 92.4 1.7 5.8E-05 33.7 10.5 80 155-248 16-100 (152)
232 4h7y_A Dual specificity protei 91.9 1.8 6E-05 33.5 9.7 67 338-405 73-139 (161)
233 2ff4_A Probable regulatory pro 91.9 3.4 0.00012 37.8 13.9 70 257-328 174-248 (388)
234 2ff4_A Probable regulatory pro 91.3 1.2 4E-05 40.9 10.1 72 292-364 173-249 (388)
235 1nzn_A CGI-135 protein, fissio 91.2 1.9 6.4E-05 32.2 9.1 85 305-391 16-105 (126)
236 1v54_E Cytochrome C oxidase po 90.3 3.2 0.00011 29.4 9.0 68 147-219 19-87 (109)
237 4b4t_P 26S proteasome regulato 90.0 12 0.00042 34.8 20.8 265 115-389 30-324 (445)
238 4gns_B Protein CSD3, chitin bi 89.6 2 6.9E-05 42.8 10.6 126 258-387 252-398 (754)
239 4h7y_A Dual specificity protei 89.2 4 0.00014 31.5 9.6 109 209-322 11-126 (161)
240 4gns_B Protein CSD3, chitin bi 88.3 9.8 0.00033 38.0 14.4 129 174-316 249-397 (754)
241 1v54_E Cytochrome C oxidase po 88.2 5.4 0.00019 28.3 9.7 47 308-354 28-74 (109)
242 4fhn_B Nucleoporin NUP120; pro 87.5 21 0.00072 37.8 17.4 54 142-201 817-870 (1139)
243 1nzn_A CGI-135 protein, fissio 86.6 4.9 0.00017 29.9 8.6 23 331-353 80-102 (126)
244 2y69_E Cytochrome C oxidase su 86.4 7.2 0.00025 29.3 9.1 63 152-219 68-130 (152)
245 4ady_A RPN2, 26S proteasome re 86.0 33 0.0011 35.1 18.7 147 235-389 506-658 (963)
246 4fhn_B Nucleoporin NUP120; pro 85.1 42 0.0014 35.5 19.5 149 105-270 816-987 (1139)
247 2y69_E Cytochrome C oxidase su 84.9 11 0.00036 28.4 9.7 60 345-404 73-132 (152)
248 4ady_A RPN2, 26S proteasome re 84.6 39 0.0013 34.7 21.1 275 111-412 421-724 (963)
249 3lvg_A Clathrin heavy chain 1; 83.8 4.5E-05 1.5E-09 70.5 -23.8 253 98-407 51-304 (624)
250 3esl_A Checkpoint serine/threo 83.1 12 0.00042 30.3 10.1 78 130-210 70-149 (202)
251 2wpv_A GET4, UPF0363 protein Y 80.1 30 0.001 30.3 19.3 173 174-387 34-215 (312)
252 2p58_C Putative type III secre 79.6 13 0.00046 26.2 7.8 77 269-354 22-98 (116)
253 3ltm_A Alpha-REP4; protein eng 79.5 23 0.00078 28.5 19.2 17 136-152 32-48 (211)
254 3ffl_A Anaphase-promoting comp 77.4 10 0.00035 29.7 7.6 97 106-202 25-151 (167)
255 3lpz_A GET4 (YOR164C homolog); 77.2 39 0.0013 29.9 19.2 173 174-388 36-215 (336)
256 4a1g_A Mitotic checkpoint seri 75.9 25 0.00085 27.1 10.4 73 131-209 62-134 (152)
257 4b4t_R RPN7, 26S proteasome re 75.6 24 0.00084 32.5 11.2 129 235-365 110-248 (429)
258 2uwj_G Type III export protein 75.4 13 0.00045 26.2 6.7 77 269-354 21-97 (115)
259 1zbp_A Hypothetical protein VP 74.8 11 0.00039 32.1 7.8 56 298-354 5-60 (273)
260 1zbp_A Hypothetical protein VP 74.4 11 0.00036 32.3 7.5 56 145-202 5-60 (273)
261 2p58_C Putative type III secre 74.4 20 0.00069 25.3 8.0 77 235-320 23-99 (116)
262 2uwj_G Type III export protein 74.3 19 0.00066 25.4 7.4 77 235-320 22-98 (115)
263 4fke_A Aminopeptidase N; zinc 71.4 96 0.0033 31.8 16.6 163 214-389 689-860 (909)
264 3ffl_A Anaphase-promoting comp 70.9 35 0.0012 26.6 10.6 26 364-389 126-151 (167)
265 2wvi_A Mitotic checkpoint seri 70.4 36 0.0012 26.5 10.3 76 130-211 56-131 (164)
266 3ltj_A Alpharep-4; protein eng 68.8 42 0.0014 26.6 19.8 19 171-189 57-75 (201)
267 3ltm_A Alpha-REP4; protein eng 67.2 47 0.0016 26.6 21.0 18 288-305 124-141 (211)
268 3esl_A Checkpoint serine/threo 67.1 49 0.0017 26.8 10.2 57 303-359 92-149 (202)
269 1qsa_A Protein (soluble lytic 66.4 99 0.0034 30.1 27.8 272 88-389 55-348 (618)
270 4b4t_R RPN7, 26S proteasome re 66.1 81 0.0028 29.0 12.5 100 212-319 132-237 (429)
271 3o48_A Mitochondria fission 1 65.5 40 0.0014 25.2 10.2 82 320-401 35-121 (134)
272 4aez_C MAD3, mitotic spindle c 62.2 53 0.0018 27.1 9.1 72 132-209 112-183 (223)
273 3lvg_A Clathrin heavy chain 1; 59.6 0.75 2.6E-05 43.1 -2.6 199 99-310 81-324 (624)
274 3txn_A 26S proteasome regulato 59.5 1E+02 0.0035 27.9 21.9 170 174-353 20-209 (394)
275 3lpz_A GET4 (YOR164C homolog); 59.1 96 0.0033 27.4 21.7 174 140-353 38-215 (336)
276 3ltj_A Alpharep-4; protein eng 56.8 71 0.0024 25.2 20.6 154 171-353 26-179 (201)
277 2wpv_A GET4, UPF0363 protein Y 54.4 1.1E+02 0.0038 26.7 20.9 171 140-352 36-215 (312)
278 2f6m_A Suppressor protein STP2 53.9 24 0.00082 22.6 4.4 45 328-373 5-49 (65)
279 3txn_A 26S proteasome regulato 53.4 1.3E+02 0.0045 27.3 21.8 275 104-390 22-344 (394)
280 2d2s_A Exocyst complex compone 53.2 90 0.0031 26.0 9.3 93 259-354 23-120 (235)
281 2ion_A PDCD4, programmed cell 52.4 61 0.0021 24.9 7.5 67 256-324 11-79 (152)
282 2nsz_A Programmed cell death p 51.6 71 0.0024 23.6 8.9 25 293-317 10-34 (129)
283 2nsz_A Programmed cell death p 51.5 71 0.0024 23.6 8.9 68 256-325 9-78 (129)
284 2ion_A PDCD4, programmed cell 51.3 64 0.0022 24.7 7.5 63 293-356 12-76 (152)
285 3eiq_C Programmed cell death p 50.7 1.4E+02 0.0047 26.7 14.9 64 328-392 220-285 (358)
286 1k1a_A B-cell lymphoma 3-encod 50.4 24 0.00083 28.8 5.5 179 179-383 12-203 (241)
287 2zu6_B Programmed cell death p 49.4 1.1E+02 0.0036 26.7 9.5 64 328-392 169-234 (307)
288 2d2s_A Exocyst complex compone 48.1 97 0.0033 25.7 8.7 84 232-319 31-120 (235)
289 3hra_A Ankyrin repeat family p 48.1 12 0.00042 29.7 3.1 15 183-197 12-26 (201)
290 1y8m_A FIS1; mitochondria, unk 44.5 1E+02 0.0035 23.4 12.9 80 322-402 36-121 (144)
291 4g8k_A 2-5A-dependent ribonucl 43.8 66 0.0023 28.0 7.6 104 241-360 221-329 (337)
292 2keb_A DNA polymerase subunit 42.2 86 0.0029 21.9 6.3 31 309-339 28-58 (101)
293 1y8m_A FIS1; mitochondria, unk 41.7 1.1E+02 0.0038 23.1 11.1 67 251-318 36-105 (144)
294 3eu9_A Huntingtin-interacting 41.0 19 0.00065 29.4 3.3 23 367-389 214-236 (240)
295 3eiq_C Programmed cell death p 40.9 2E+02 0.0067 25.7 17.2 65 257-323 220-286 (358)
296 1wdy_A 2-5A-dependent ribonucl 40.8 37 0.0013 28.4 5.3 213 107-348 8-239 (285)
297 2fe3_A Peroxide operon regulat 40.6 1.1E+02 0.0037 23.0 7.3 10 344-353 40-49 (145)
298 2fu4_A Ferric uptake regulatio 40.5 77 0.0026 20.9 6.1 56 351-407 8-65 (83)
299 1s6c_A KV4 potassium channel-i 40.2 1.2E+02 0.0042 23.2 10.5 142 134-279 35-181 (183)
300 1wty_A Hypothetical protein TT 39.9 36 0.0012 24.8 4.3 66 270-342 4-70 (119)
301 2fu4_A Ferric uptake regulatio 39.9 79 0.0027 20.8 6.5 64 313-377 5-69 (83)
302 3d5l_A Regulatory protein RECX 39.4 1.4E+02 0.0049 24.4 8.4 31 307-337 93-123 (221)
303 3aji_A 26S proteasome non-ATPa 39.2 35 0.0012 27.6 4.8 20 180-199 10-29 (231)
304 3o48_A Mitochondria fission 1 39.2 1.2E+02 0.0041 22.7 9.9 29 212-248 79-107 (134)
305 2xig_A Ferric uptake regulatio 39.2 1.2E+02 0.0042 22.9 7.5 31 343-373 44-74 (150)
306 3rjo_A Endoplasmic reticulum a 38.7 2.3E+02 0.0077 25.8 24.1 146 212-373 198-353 (419)
307 4a1g_A Mitotic checkpoint seri 38.5 1.3E+02 0.0045 23.0 10.3 50 309-358 84-134 (152)
308 3e3v_A Regulatory protein RECX 38.4 1.4E+02 0.0049 23.4 9.9 50 271-322 50-99 (177)
309 1wdy_A 2-5A-dependent ribonucl 38.1 19 0.00067 30.2 3.0 214 143-384 8-240 (285)
310 4aez_C MAD3, mitotic spindle c 37.9 1.7E+02 0.0058 24.1 9.3 53 307-359 131-184 (223)
311 2xig_A Ferric uptake regulatio 37.9 1.1E+02 0.0036 23.3 6.9 58 349-407 16-74 (150)
312 1mzb_A Ferric uptake regulatio 36.8 1.2E+02 0.004 22.5 6.9 56 351-407 9-66 (136)
313 3l6a_A Eukaryotic translation 36.4 1.4E+02 0.0048 26.7 8.4 66 256-326 14-84 (364)
314 2fe3_A Peroxide operon regulat 36.4 1.3E+02 0.0046 22.5 8.0 58 349-407 11-69 (145)
315 4ets_A Ferric uptake regulatio 35.6 80 0.0027 24.4 5.9 73 117-191 13-87 (162)
316 3eyy_A Putative iron uptake re 35.1 86 0.0029 23.6 5.9 32 343-374 35-66 (145)
317 3eyy_A Putative iron uptake re 35.0 1.1E+02 0.0037 23.1 6.5 57 349-407 8-65 (145)
318 1mzb_A Ferric uptake regulatio 34.5 1.1E+02 0.0039 22.6 6.5 44 297-340 24-68 (136)
319 2yru_A Steroid receptor RNA ac 34.3 1.3E+02 0.0046 21.8 7.7 44 239-282 46-89 (118)
320 2f6m_A Suppressor protein STP2 33.8 90 0.0031 19.9 4.7 45 363-407 5-49 (65)
321 3se6_A Endoplasmic reticulum a 33.2 4.2E+02 0.015 27.3 17.4 158 214-386 751-921 (967)
322 2wvi_A Mitotic checkpoint seri 32.9 1.7E+02 0.0059 22.7 11.3 55 307-361 77-132 (164)
323 4ets_A Ferric uptake regulatio 32.9 99 0.0034 23.9 6.1 56 284-340 27-84 (162)
324 1y1x_A Leishmania major homolo 32.7 1.7E+02 0.006 22.7 8.0 94 102-201 44-140 (191)
325 2jul_A Calsenilin; EF-hand, ca 32.5 2.1E+02 0.0072 23.6 9.9 130 102-244 109-254 (256)
326 3f3f_C Nucleoporin NUP85; stru 32.2 2.8E+02 0.0095 26.5 9.8 92 97-192 475-568 (570)
327 2w57_A Ferric uptake regulatio 31.4 1.2E+02 0.0042 22.9 6.3 56 351-407 8-65 (150)
328 1ug3_A EIF4GI, eukaryotic prot 30.7 2.8E+02 0.0094 24.4 9.7 63 105-169 15-78 (339)
329 3hra_A Ankyrin repeat family p 30.2 55 0.0019 25.7 4.4 19 262-280 111-129 (201)
330 2w57_A Ferric uptake regulatio 30.1 1.2E+02 0.0041 23.0 6.1 33 307-339 34-66 (150)
331 3qil_A Clathrin heavy chain 1; 30.0 44 0.0015 24.5 3.2 55 101-159 32-86 (125)
332 1k1a_A B-cell lymphoma 3-encod 29.8 45 0.0015 27.1 3.9 149 217-384 12-171 (241)
333 2rfa_A Transient receptor pote 29.7 1.2E+02 0.0039 24.4 6.4 21 179-199 40-60 (232)
334 2ijq_A Hypothetical protein; s 29.5 2E+02 0.0067 22.3 8.5 61 140-202 36-104 (161)
335 2b7e_A PRE-mRNA processing pro 28.7 51 0.0017 20.6 2.9 31 377-407 3-35 (59)
336 1oyz_A Hypothetical protein YI 28.6 2.5E+02 0.0087 23.3 22.9 138 251-404 139-277 (280)
337 3pvs_A Replication-associated 28.4 3.5E+02 0.012 24.8 11.6 34 235-268 271-304 (447)
338 1oyz_A Hypothetical protein YI 27.8 2.6E+02 0.0089 23.2 23.7 209 107-353 43-262 (280)
339 2xdt_A Endoplasmic reticulum a 27.8 5E+02 0.017 26.4 21.6 157 214-386 683-853 (897)
340 3lxu_X Tripeptidyl-peptidase 2 27.7 2.6E+02 0.009 30.0 9.6 95 139-248 1236-1345(1354)
341 2ijq_A Hypothetical protein; s 27.6 2.1E+02 0.0073 22.1 8.5 54 301-354 43-104 (161)
342 3t8k_A Uncharacterized protein 27.2 1.4E+02 0.0047 23.4 6.2 20 235-254 51-70 (186)
343 1bpo_A Protein (clathrin); cla 26.5 4E+02 0.014 24.8 11.6 84 113-202 341-424 (494)
344 1n00_A Annexin GH1; membrane-b 26.4 2.1E+02 0.0072 25.0 7.7 57 256-318 77-135 (321)
345 2o03_A Probable zinc uptake re 26.2 1E+02 0.0036 22.6 5.0 47 295-341 15-61 (131)
346 3f3f_C Nucleoporin NUP85; stru 25.9 2.7E+02 0.0093 26.6 8.6 67 154-226 498-564 (570)
347 1qsa_A Protein (soluble lytic 25.0 4.8E+02 0.016 25.2 26.4 179 188-385 229-438 (618)
348 3mwm_A ZUR, putative metal upt 24.7 94 0.0032 23.2 4.5 47 295-341 18-64 (139)
349 3pvs_A Replication-associated 24.3 4.2E+02 0.014 24.3 12.3 30 251-282 191-220 (447)
350 3mv2_A Coatomer subunit alpha; 24.0 3.6E+02 0.012 23.5 11.6 68 340-407 185-256 (325)
351 2znd_A Programmed cell death p 24.0 1.2E+02 0.0042 23.0 5.3 12 235-246 109-120 (172)
352 2p22_A Suppressor protein STP2 23.9 1E+02 0.0034 24.3 4.5 52 324-376 110-161 (174)
353 2yru_A Steroid receptor RNA ac 22.7 2.2E+02 0.0076 20.6 7.8 45 347-391 48-92 (118)
354 1wgl_A TOLL-interacting protei 22.3 1.5E+02 0.0051 18.4 5.7 51 84-136 6-57 (59)
355 2qfz_A TBC1 domain family memb 22.1 1.5E+02 0.0053 26.0 6.1 78 311-388 230-314 (345)
356 3rjo_A Endoplasmic reticulum a 21.8 4.4E+02 0.015 23.7 20.4 205 112-340 119-355 (419)
357 2o03_A Probable zinc uptake re 21.8 1.4E+02 0.0046 22.0 4.8 43 365-407 15-58 (131)
358 3kea_A K1L; tropism, ANK repea 21.8 68 0.0023 27.2 3.6 132 243-388 48-186 (285)
359 4b4t_O 26S proteasome regulato 21.7 4.4E+02 0.015 23.6 10.1 58 260-317 82-154 (393)
360 1s3q_A Ferritin; ferroxidase, 21.6 2.8E+02 0.0097 21.4 7.3 19 235-253 53-71 (173)
361 1ug3_A EIF4GI, eukaryotic prot 21.6 1.5E+02 0.0051 26.2 5.8 66 257-324 14-80 (339)
362 3twr_A Tankyrase-2; ankyrin re 21.5 87 0.003 23.5 3.9 113 261-383 12-128 (165)
363 3dd4_A KV channel-interacting 21.5 3.2E+02 0.011 22.0 9.2 103 119-226 103-217 (229)
364 1yii_A Annexin A5, annexin V, 21.5 4E+02 0.014 23.1 14.5 111 118-248 18-134 (320)
365 3hzj_A Rabgap1L, RAB GTPase-ac 21.5 1.7E+02 0.0057 25.3 6.1 44 276-320 176-219 (310)
366 1n00_A Annexin GH1; membrane-b 21.4 4E+02 0.014 23.1 12.0 103 213-332 77-198 (321)
367 2jul_A Calsenilin; EF-hand, ca 21.3 3.4E+02 0.012 22.2 11.2 143 134-280 108-255 (256)
368 4gq2_M Nucleoporin NUP120; bet 21.3 6.4E+02 0.022 25.9 11.2 111 105-225 814-950 (950)
369 2dod_A Transcription elongatio 21.1 86 0.0029 21.1 3.1 32 376-407 16-48 (82)
370 3bu8_A Telomeric repeat-bindin 20.8 3.5E+02 0.012 22.1 11.1 115 104-226 20-162 (235)
371 3t8k_A Uncharacterized protein 20.5 2.7E+02 0.0091 21.6 6.7 124 264-391 13-145 (186)
372 4b8b_A General negative regula 20.2 3.8E+02 0.013 25.7 8.3 76 332-407 456-544 (603)
373 3c1d_A Protein ORAA, regulator 20.1 2.9E+02 0.01 21.0 11.0 49 271-322 47-95 (159)
374 1uzc_A Hypothetical protein FL 20.1 98 0.0033 20.2 3.1 33 375-407 13-46 (71)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.9e-35 Score=283.04 Aligned_cols=216 Identities=16% Similarity=0.198 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccc-hhh
Q 014860 154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTY-INH 232 (417)
Q Consensus 154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~-~~~ 232 (417)
..++.+...+.+.+.......+++.+|.+|++.|++++|+++|++|.+. |++||..+||+||.+|++.+.... ...
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN---GVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 4456667777776665334567899999999999999999999999998 999999999999999998775222 122
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860 233 VYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNAREL 312 (417)
Q Consensus 233 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 312 (417)
..+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++|.++
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 33799999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 313 CDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 313 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.8e-34 Score=277.07 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=181.7
Q ss_pred HHHHHHHHHhHhCCCCCCCCCH-HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 190 SRAVYVFKYMKNSRNLECRPSI-RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 268 (417)
..+..+.++++++ +..+.. ..++.+|.+|++.|+ +++|+++|++|.+.|+.||..|||+||.+|++.+
T Consensus 7 s~~e~L~~~~~~k---~~~~spe~~l~~~id~c~k~G~--------~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~ 75 (501)
T 4g26_A 7 SPSENLSRKAKKK---AIQQSPEALLKQKLDMCSKKGD--------VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE 75 (501)
T ss_dssp --------------------CHHHHHHHHHHHTTTSCC--------HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHh---cccCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCC
Confidence 3455666777665 555443 458999999999999 9999999999999999999999999999999876
Q ss_pred C---------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 269 H---------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG 339 (417)
Q Consensus 269 ~---------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 339 (417)
. +++|.++|++|.. .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|
T Consensus 76 ~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 76 AATESSPNPGLSRGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp CCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred chhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 5 6889999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|. |+..||+.++..++..
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999 8999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=4.2e-25 Score=219.38 Aligned_cols=286 Identities=8% Similarity=-0.042 Sum_probs=239.0
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT 178 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 178 (417)
++..++..++..+.+.|++++|+++|+.+.+.. +.+..++..++.++.+.|++++|.++++.+.+... .+..+++.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 378 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP--EKAVTWLA 378 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc--ccHHHHHH
Confidence 344577888888999999999999999886543 44778888899999999999999999999886543 67888999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|+ +++|+++|+++.+.+ +.+..+|+
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAIEGE--------HDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHHHH
Confidence 999999999999999999998874 13467889999999999999 999999999998775 45788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHH
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPS--SKSYNSLV 332 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~li 332 (417)
.+..+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 9999999999999999999998763 2347888999999999999999999999998875 66777 78899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL 404 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 404 (417)
.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+...-+...+..+-..|
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999999988764 447888999999999999999999999999887654666666665544
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=4.8e-25 Score=218.97 Aligned_cols=281 Identities=9% Similarity=0.013 Sum_probs=252.2
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR 187 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 187 (417)
+..|.+.|++++|+++|+.+.+. +++..++..++.++.+.|++++|.++|+.+.+.+. .+..+++.++.+|.+.|
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP--YNLDVYPLHLASLHESG 353 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCCTTHHHHHHHHHHHT
T ss_pred HHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHhC
Confidence 44556788999999999988643 58999999999999999999999999999998764 57788999999999999
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS 267 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 267 (417)
++++|.++|+++.+. .+.+..+|+.++..|.+.|+ +++|.++|+++.+.. +.+..+|+.++.+|.+.
T Consensus 354 ~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 354 EKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNK--------ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp CHHHHHHHHHHHHHH----CTTSHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 999999999999874 35678999999999999999 999999999998754 44688999999999999
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860 268 NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKN 347 (417)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 347 (417)
|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus 421 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 421 GEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp TCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999862 24578999999999999999999999999999764 33789999999999999999999999
Q ss_pred HHHHHHc----CCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Q 014860 348 LWEMIEK----QRPVD--FITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFG 409 (417)
Q Consensus 348 ~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~ 409 (417)
|+++.+. +..|+ ..+|..+..+|.+.|++++|.++|+++.+.+..+..+|..+..+|.+.+.
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 9999887 67888 78999999999999999999999999999876688999999999987743
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=2.1e-19 Score=168.70 Aligned_cols=296 Identities=13% Similarity=0.037 Sum_probs=215.2
Q ss_pred HHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860 91 FRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 91 ~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (417)
+...+...|.. ..|..+..++...|++++|++.|+.+.+.. +.+..+|..+..++...|++++|.+.++.+.+..+
T Consensus 56 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 132 (388)
T 1w3b_A 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP- 132 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 44555555544 367778888888999999999998886543 45677888888888899999999999888887653
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
.+...+..+...+...|++++|.+.|+++.+. .+.+..+|..+...+...|+ +++|.+.|+++.+.+
T Consensus 133 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~ 199 (388)
T 1w3b_A 133 -DLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAVAWSNLGCVFNAQGE--------IWLAIHHFEKAVTLD 199 (388)
T ss_dssp -TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC
Confidence 45667778888888888899998888888875 13357788888888888888 888888888887754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 250 IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN 329 (417)
Q Consensus 250 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 329 (417)
+-+...|..+...+...|++++|...+++..... +.+..++..+...|...|++++|.+.|+++.+.+. .+..+|.
T Consensus 200 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 275 (388)
T 1w3b_A 200 -PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYC 275 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 3345667777777777777777777777665421 23466777777777777777777777777776532 2456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
.+..+|.+.|++++|.+.|+++.+. .+.+..++..+...+.+.|++++|...++++.+....+..++..+..++.+.
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 7777777777777777777777765 3456667777777777777777777777777765433566666666666655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=3.9e-19 Score=166.83 Aligned_cols=299 Identities=13% Similarity=0.089 Sum_probs=255.4
Q ss_pred ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
....+.+.+...|+.. .+..+..++...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445667777777664 57888899999999999999999997643 44567788888899999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860 166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM 245 (417)
Q Consensus 166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m 245 (417)
..+ .+..+|..+...|.+.|++++|...|+++.+.. +.+...|..+...+...|+ +++|...|++.
T Consensus 164 ~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~a 229 (388)
T 1w3b_A 164 TQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----PNFLDAYINLGNVLKEARI--------FDRAVAAYLRA 229 (388)
T ss_dssp HCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTC--------TTHHHHHHHHH
T ss_pred hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence 754 568899999999999999999999999999862 4457889999999999999 99999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860 246 VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325 (417)
Q Consensus 246 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 325 (417)
.+.. +-+..++..+...|.+.|++++|.+.|+++.+. -+.+..+|..+...+.+.|++++|.+.|+++.+.. +.+.
T Consensus 230 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 305 (388)
T 1w3b_A 230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA 305 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccH
Confidence 8764 345789999999999999999999999999872 23457789999999999999999999999998763 4578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
.+++.+...+...|++++|.+.++++.+. .+.+..++..+...|.+.|++++|.+.|+++.+........|..+-..+.
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 99999999999999999999999999875 34567899999999999999999999999999865446777777666654
Q ss_pred h
Q 014860 406 D 406 (417)
Q Consensus 406 ~ 406 (417)
+
T Consensus 385 ~ 385 (388)
T 1w3b_A 385 E 385 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=5.7e-19 Score=168.88 Aligned_cols=282 Identities=10% Similarity=0.035 Sum_probs=236.0
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF 182 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 182 (417)
.+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|.+.++.+.+... .+...+..+..+
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 103 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM--DFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHH
Confidence 56677888899999999999999997643 56899999999999999999999999999998764 578899999999
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCC-H---HHHHHHHH------------HHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPS-I---RSYNILFT------------AFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~---~~~~~li~------------~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
|.+.|++++|.+.|+++.+. .|+ . ..|..+.. .+...|+ +++|..+|+++.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~ 170 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--------YTAAIAFLDKIL 170 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHH
Confidence 99999999999999999975 454 3 56666644 4888999 999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860 247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326 (417)
Q Consensus 247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 326 (417)
+.. +.+..++..+..+|.+.|++++|.++|+.+.+. .+.+..+|..+...|...|++++|...|+++.... +.+..
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 246 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 246 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHH
Confidence 764 457888999999999999999999999998763 23568899999999999999999999999998653 22444
Q ss_pred HHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 327 SYNSL------------VSALALNGEVEETVKNLWEMIEKQRPVD-----FITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 327 ~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
.+..+ ...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|++++|...++++...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45444 78889999999999999999875 344 447788888999999999999999998877
Q ss_pred CCCChhhHHHHHHHHHhh
Q 014860 390 NLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 390 ~~p~~~t~~~ll~~~~~~ 407 (417)
...+...|..+..+|...
T Consensus 325 ~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp CTTCHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHh
Confidence 545778888888887665
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=1.1e-17 Score=160.03 Aligned_cols=294 Identities=12% Similarity=0.067 Sum_probs=242.5
Q ss_pred ChhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860 87 DDTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA 165 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 165 (417)
....+.+.+...|+. ..+..+..++...|++++|+..|+.+.+.. +.+...+..+..++...|++++|.+.++.+.+
T Consensus 45 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334466666666544 467778888899999999999999997654 55789999999999999999999999999998
Q ss_pred CCCCCCCH---HHHHHH------------HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccch
Q 014860 166 TPSFCGTE---ALYNTI------------IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYI 230 (417)
Q Consensus 166 ~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~ 230 (417)
... .+. ..+..+ ...+.+.|++++|+..|+++.+. .+.+...+..+...|...|+
T Consensus 123 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---- 192 (450)
T 2y4t_A 123 SNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGE---- 192 (450)
T ss_dssp SCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC----
T ss_pred cCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCC----
Confidence 763 344 566655 44489999999999999999875 24578899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH------------HH
Q 014860 231 NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL------------IH 298 (417)
Q Consensus 231 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l------------i~ 298 (417)
+++|.++|+++.+.. +.+..++..+...|...|++++|.+.|+.+.... +.+...+..+ ..
T Consensus 193 ----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 193 ----PRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp ----GGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764 4578899999999999999999999999997632 2344445444 78
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 299 GLCAQGRTKNARELCDEMKRKGFVPS-----SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 299 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
.|...|++++|...|+++.+. .|+ ...|..+..++.+.|++++|...++++.+. .+.+...|..+..+|...
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHh
Confidence 899999999999999999874 344 457889999999999999999999999876 234688999999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCChhhHHHHHH
Q 014860 374 GRAGEAMKLLKELQNKNLIDGYTYTKLLD 402 (417)
Q Consensus 374 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 402 (417)
|++++|...+++..+...-+...+..+-.
T Consensus 343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 99999999999999865435555555543
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.8e-21 Score=190.66 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGV--VYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 328 (417)
.--..|||++|++||+.|++++|.++|++|.+ ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457999999999999999999999988764 1489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 014860 329 NSLVSALALNGE-VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGE 378 (417)
Q Consensus 329 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 378 (417)
|+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 999999999998 57899999999999999999999999987776644333
No 10
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=9.9e-21 Score=188.41 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
-..+||+||++|+++|++++|.++|++|.+....|+.||+.|||+||.+|++.|+ +++|.++|++|.+.|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~--------~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA--------FKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCC
Confidence 3578999999999999999999999887653222789999999999999999999 99999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------
Q 014860 252 PDIFSLNSMIKGYILSNHV-NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS------ 324 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------ 324 (417)
||.+|||++|.++|+.|+. ++|.++|++|.+ .|+.||..+|++++.++.+. .+++.++++ ..+..|+
T Consensus 198 PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~ 271 (1134)
T 3spa_A 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPP 271 (1134)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCC
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCccc
Confidence 9999999999999999984 789999999999 79999999999999877664 344444444 3455554
Q ss_pred HHHHHHHHHHHHhcC
Q 014860 325 SKSYNSLVSALALNG 339 (417)
Q Consensus 325 ~~~~~~li~~~~~~g 339 (417)
..+...|.+.|.+.+
T Consensus 272 ~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 272 VNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCTTTHHHHCCCS
T ss_pred ccchHHHHHHHccCC
Confidence 445566667777655
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.5e-17 Score=149.35 Aligned_cols=289 Identities=12% Similarity=0.017 Sum_probs=244.7
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 181 (417)
..+..+...+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++.+.+... .+...+..+..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 98 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGC 98 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHH
Confidence 456667777888899999999999997654 45566777788888999999999999999998764 56788999999
Q ss_pred HHHHhC-CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 182 FFAEAR-KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 182 ~~~~~g-~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
.+...| ++++|.+.|++..+. .+.+...|..+...+...|+ +++|.+.|++..+.. +.+...+..+
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESE--------HDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT----CTTCTHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 999999 999999999999975 24457889999999999999 999999999998765 3356777789
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHH
Q 014860 261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG--------FVPSSKSYNSLV 332 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~~~~~li 332 (417)
...|...|++++|.+.++...+. .+.+...+..+...+...|++++|...+++..+.. ...+..++..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 99999999999999999999762 34567889999999999999999999999987641 133467899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcCc
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGN 410 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~ 410 (417)
.+|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++..+....+...+..+..++....|+
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 99999999999999999998863 346678899999999999999999999999887655788888888888655443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.7e-15 Score=137.30 Aligned_cols=281 Identities=10% Similarity=0.016 Sum_probs=216.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM--DFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcchHHHHHHHHH
Confidence 4456677788999999999999997654 56789999999999999999999999999998754 5778999999999
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCCCC----CHHHHHHH------------HHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLECRP----SIRSYNIL------------FTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
.+.|++++|...|+++.+. .| +...+..+ ...+...|+ +++|.++++++.+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD--------YTAAITFLDKILE 148 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHH
Confidence 9999999999999999975 45 44455544 578889999 9999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014860 248 DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS 327 (417)
Q Consensus 248 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 327 (417)
.. +.+...+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++..+.... +...
T Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 224 (359)
T 3ieg_A 149 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 224 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHH
Confidence 65 456788888999999999999999999988762 3456778888888888889998888888888765322 3333
Q ss_pred HH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 328 YN------------SLVSALALNGEVEETVKNLWEMIEKQRPVD-F----ITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 328 ~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
+. .+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|...+++..+..
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 32 22555777788888888887777652 22 2 223445667777777777777777777764
Q ss_pred CCChhhHHHHHHHHHhh
Q 014860 391 LIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 391 ~p~~~t~~~ll~~~~~~ 407 (417)
..+...|..+-..+...
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIE 319 (359)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 44566666666666544
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.6e-16 Score=146.12 Aligned_cols=282 Identities=10% Similarity=-0.061 Sum_probs=220.5
Q ss_pred hccCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860 112 TLQEDPLVCLE-LFNWASKQPRFRH--DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK 188 (417)
Q Consensus 112 ~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 188 (417)
...++++.|++ .|+...+...-.| +...+..+...+...|++++|...++.+.+... .+..++..+..+|.+.|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcC
Confidence 34578888888 8876543321122 356677888999999999999999999998764 678899999999999999
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH---------
Q 014860 189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS--------- 259 (417)
Q Consensus 189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--------- 259 (417)
+++|+..|+++.+. .+.+..+|..+...+...|+ +++|.+.|+++.+... .+...+..
T Consensus 114 ~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 114 ELLAISALRRCLEL----KPDNQTALMALAVSFTNESL--------QRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTST-TTGGGCC----------
T ss_pred HHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhc
Confidence 99999999999886 24578899999999999999 9999999999998652 22222221
Q ss_pred ------HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 260 ------MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 260 ------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
.+..+...|++++|...|+.+.+...-.++..++..+...|...|++++|...++++.+.. +.+..+|..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 259 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGA 259 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 2444458999999999999998743222258899999999999999999999999998763 336789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-----------hhhHHHHHH
Q 014860 334 ALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLID-----------GYTYTKLLD 402 (417)
Q Consensus 334 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-----------~~t~~~ll~ 402 (417)
.|...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|++..+....+ ..+|..+..
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 9999999999999999998862 4467889999999999999999999999988753322 678888888
Q ss_pred HHHhhcCc
Q 014860 403 VLEDDFGN 410 (417)
Q Consensus 403 ~~~~~~~~ 410 (417)
++...+..
T Consensus 339 ~~~~~g~~ 346 (368)
T 1fch_A 339 ALSMLGQS 346 (368)
T ss_dssp HHHHHTCG
T ss_pred HHHHhCCh
Confidence 88776443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=8.2e-15 Score=135.00 Aligned_cols=299 Identities=11% Similarity=0.039 Sum_probs=238.7
Q ss_pred hhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860 88 DTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT 166 (417)
Q Consensus 88 ~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 166 (417)
...+.+.+...|+. ..+..+...+...|+++.|+..|+.+.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 23 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 100 (359)
T 3ieg_A 23 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 34466666666654 356667778889999999999999987654 457899999999999999999999999999987
Q ss_pred CCCC-CCHHHHHHH------------HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhh
Q 014860 167 PSFC-GTEALYNTI------------IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHV 233 (417)
Q Consensus 167 ~~~~-~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~ 233 (417)
.... .+...+..+ ...+...|++++|.+.|+++.+. .+.+...+..+...+...|+
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------- 169 (359)
T 3ieg_A 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECFIKEGE------- 169 (359)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-------
T ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHCCC-------
Confidence 5300 133444444 58899999999999999999885 24578889999999999999
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH------------HHHHHHH
Q 014860 234 YMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD------------YLIHGLC 301 (417)
Q Consensus 234 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------~li~~~~ 301 (417)
+++|.+.+++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+...+. .+...+.
T Consensus 170 -~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 170 -PRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp -HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 5578899999999999999999999999987632 22333333 2366689
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860 302 AQGRTKNARELCDEMKRKGFVPSS----KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG 377 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 377 (417)
+.|++++|...++++.+.... +. ..+..+..+|.+.|++++|...+++..+. .+.+..+|..+...|...|+++
T Consensus 246 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 246 RDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999875322 33 23556778999999999999999999986 2447789999999999999999
Q ss_pred HHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 378 EAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 378 ~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
+|.+.|++..+...-+...+..+..+..
T Consensus 324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9999999999876445666655555443
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.2e-16 Score=148.37 Aligned_cols=264 Identities=13% Similarity=0.012 Sum_probs=216.7
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 181 (417)
..+..+...+.+.|++++|++.|+.+.+.. +.+..++..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 141 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP--NNLKALMALAV 141 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Confidence 347778888899999999999999997654 56899999999999999999999999999998764 57899999999
Q ss_pred HHHHhCCHHHHHHHHHHhHhCCCCCCCCC-----------HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860 182 FFAEARKLSRAVYVFKYMKNSRNLECRPS-----------IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI 250 (417)
Q Consensus 182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-----------~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~ 250 (417)
.|.+.|++++|+..|+++.+. .|+ ...+..+...+...|+ +++|.++|+++.+...
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p 208 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ-----NPKYKYLVKNKKGSPGLTRRMSKSPVDSSV--------LEGVKELYLEAAHQNG 208 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CHHHHCC-------------------CCHH--------HHHHHHHHHHHHHHSC
T ss_pred HHHccccHHHHHHHHHHHHHh-----CccchHHHhhhccchHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhCc
Confidence 999999999999999999875 222 2234455778888898 9999999999998642
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 251 E-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN 329 (417)
Q Consensus 251 ~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 329 (417)
. ++..++..+...|...|++++|.+.|++..+. .+.+..+|..+..+|...|++++|...|+++.+.. +.+..++.
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 285 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRY 285 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHH
Confidence 2 26889999999999999999999999998773 23568899999999999999999999999998763 23588999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--C---------CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 330 SLVSALALNGEVEETVKNLWEMIEKQ--R---------PVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~m~~~g--~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
.+..+|...|++++|...|+++.+.. . ..+...|..+..++...|+.+.+..+..+
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999999999988751 1 11357889999999999999988877654
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=4.9e-16 Score=144.23 Aligned_cols=266 Identities=12% Similarity=0.023 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860 101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180 (417)
Q Consensus 101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 180 (417)
...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+... .+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~ 139 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP--DNQTALMALA 139 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC--CCHHHHHHHH
Confidence 3457778888899999999999999998654 56889999999999999999999999999998764 6788999999
Q ss_pred HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH---------------HHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI---------------LFTAFLSRGKNTYINHVYMETIRCLFKQM 245 (417)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~---------------li~~~~~~g~~~~~~~~~~~~a~~~~~~m 245 (417)
..|...|++++|...|+++.+.. +.+...+.. .+..+...|+ +++|...|+++
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a 207 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYT----PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL--------FLEVKELFLAA 207 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS----TTTGGGCC---------------CTTHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc--------HHHHHHHHHHH
Confidence 99999999999999999998862 222222221 2344447888 99999999999
Q ss_pred HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860 246 VNDGIE-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 246 ~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 324 (417)
.+.... ++..++..+...|.+.|++++|...++.+... .+.+...|..+...+...|++++|...++++.+.. +.+
T Consensus 208 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 284 (368)
T 1fch_A 208 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 284 (368)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 876422 15889999999999999999999999998763 23467899999999999999999999999998753 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQR----------PVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
...+..+..+|.+.|++++|...|+++.+..- .....+|..+..+|...|+.++|..++.+
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 78999999999999999999999999887521 11267899999999999999999998763
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2.5e-16 Score=143.46 Aligned_cols=266 Identities=10% Similarity=-0.042 Sum_probs=219.3
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860 102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 181 (417)
..+-.....+...|++++|+.+|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+... .+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CCHHHHHHHHH
Confidence 455667778889999999999999987654 45888999999999999999999999999988754 57889999999
Q ss_pred HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH--------------HH-HHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 182 FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL--------------FT-AFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
.|...|++++|.+.|+++.+.. +.+...+..+ .. .+...|+ +++|.+.++++.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~ 165 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE--------YRECRTLLHAAL 165 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS----TTTTTC--------------------CCTTSHHH--------HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc--------HHHHHHHHHHHH
Confidence 9999999999999999998762 1222223222 11 2555666 999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860 247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326 (417)
Q Consensus 247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 326 (417)
+.. +.+..++..+...|...|++++|.+.++.+.+. .+.+...|..+...+...|++++|...++++.+.. +.+..
T Consensus 166 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 166 EMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 765 447889999999999999999999999998763 23467889999999999999999999999988763 33688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPV-----------DFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
++..+..+|...|++++|.+.++++.+..-.. +...|..+..++.+.|+.++|..++++..
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 89999999999999999999999988763111 46788999999999999999999987543
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.4e-16 Score=148.81 Aligned_cols=285 Identities=11% Similarity=-0.096 Sum_probs=171.3
Q ss_pred hhHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCC
Q 014860 88 DTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATP 167 (417)
Q Consensus 88 ~~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 167 (417)
...+.+.+...|+...+..+..++...|+++.|+..|+.+.+.. +.+..++..+..++...|++++|...++.+.+.+
T Consensus 26 ~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 26 IKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34466677666776677777888888888888888888876543 4567788888888888888888888888776654
Q ss_pred CCC-----------------------------------------------------------------------------
Q 014860 168 SFC----------------------------------------------------------------------------- 170 (417)
Q Consensus 168 ~~~----------------------------------------------------------------------------- 170 (417)
...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
T 2gw1_A 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183 (514)
T ss_dssp SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence 310
Q ss_pred CCHHHHHHHHHHHHH---hCCHHHHHHHHHHhHh-----CC-CCCC----CCCHHHHHHHHHHHHhcCCccchhhhhHHH
Q 014860 171 GTEALYNTIIYFFAE---ARKLSRAVYVFKYMKN-----SR-NLEC----RPSIRSYNILFTAFLSRGKNTYINHVYMET 237 (417)
Q Consensus 171 ~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~-~~g~----~p~~~~~~~li~~~~~~g~~~~~~~~~~~~ 237 (417)
.+...+......+.. .|++++|..+|+++.+ .. ..+. +.+..+|..+...+...|+ +++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 255 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND--------PLG 255 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC--------HHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC--------HHH
Confidence 002222222222332 6677777777777665 10 0000 2235566666777777777 777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 238 IRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 238 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
|...|+++.+.. |+..++..+...|...|++++|.+.++.+... .+.+...|..+...+...|++++|...+++..
T Consensus 256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777766553 22556666666666666666666666666541 12344556666666666666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 318 RKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 318 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
+.... +...+..+...|...|++++|..+++++.+. .+.+...+..+...|...|++++|...++++.+
T Consensus 332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 332 ELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 54322 3445555555666666666666666655543 122334555555555555666666655555544
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=6.6e-16 Score=143.46 Aligned_cols=255 Identities=12% Similarity=-0.011 Sum_probs=207.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...+..+...+.+.|++++|.+.++.+.+... .+..++..+...|.+.|++++|+..|+++.+. .+.+..+|.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 137 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNNLKALM 137 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHH
Confidence 455688888999999999999999999998764 67899999999999999999999999999885 244688999
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-----------IFSLNSMIKGYILSNHVNDALRIFHQMGVVY 284 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 284 (417)
.+...|...|+ +++|.+.|+++.+.. |+ ...+..+...+.+.|++++|.+.++++.+..
T Consensus 138 ~l~~~~~~~g~--------~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 138 ALAVSYTNTSH--------QQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccc--------HHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 99999999999 999999999998753 22 2233445788999999999999999998743
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014860 285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYR 364 (417)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 364 (417)
.-..+..++..+...|...|++++|.+.|++..+.. +.+..+|+.+..+|...|++++|...|+++.+. .+.+..+|.
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 285 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRY 285 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHH
Confidence 322368899999999999999999999999998763 336889999999999999999999999999886 234578899
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCC------------ChhhHHHHHHHHHhhc
Q 014860 365 TVLDEICRRGRAGEAMKLLKELQNKNLI------------DGYTYTKLLDVLEDDF 408 (417)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~~~p------------~~~t~~~ll~~~~~~~ 408 (417)
.+...|.+.|++++|...|++..+.... +...|..+-.++...+
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998775321 2566777777765553
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.2e-14 Score=132.41 Aligned_cols=272 Identities=8% Similarity=-0.064 Sum_probs=224.7
Q ss_pred ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHH
Q 014860 87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK-MYQEMDDVVNQML 164 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 164 (417)
....+.+.+...|... .+..+...+...|++++|+.+++.+.+.. +.+...+..+...+...| ++++|.+.++...
T Consensus 41 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 118 (330)
T 3hym_B 41 CYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118 (330)
T ss_dssp HHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344666777777654 55567888889999999999999997654 457888999999999999 9999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860 165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ 244 (417)
Q Consensus 165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~ 244 (417)
+... .+...|..+...|...|++++|...|+++.+. .+.+...+..+...+...|+ +++|.+.+++
T Consensus 119 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~ 184 (330)
T 3hym_B 119 TLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNN--------SKLAERFFSQ 184 (330)
T ss_dssp TTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred HhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhh--------HHHHHHHHHH
Confidence 8764 56788999999999999999999999999886 23356778889999999999 9999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 245 MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY-------NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 245 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
..+.. +.+..++..+...+...|++++|...+++..+.. ....+...|..+...|...|++++|...+++..
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99875 4567899999999999999999999999886521 113446789999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHh
Q 014860 318 RKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI-CRRGRAG 377 (417)
Q Consensus 318 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~ 377 (417)
+... .+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.+
T Consensus 264 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 264 VLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred hhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 7643 367889999999999999999999999988752 33667777777777 4555543
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.8e-15 Score=145.49 Aligned_cols=286 Identities=12% Similarity=0.046 Sum_probs=231.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
+-.....+...|++++|+..|+.+.+.. |+...|..+..++...|++++|.+.++.+.+..+ .+...+..+..+|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHH
Confidence 3345667788999999999999997654 7999999999999999999999999999998764 6788999999999
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCC--------------------------------------------------------
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLEC-------------------------------------------------------- 207 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~-------------------------------------------------------- 207 (417)
.+.|++++|...|+++.+......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999877521000
Q ss_pred -------------------CCCHHHHHHHHHHHHh---cCCccchhhhhHHHHHHHHHHHHH-----CCCC--------C
Q 014860 208 -------------------RPSIRSYNILFTAFLS---RGKNTYINHVYMETIRCLFKQMVN-----DGIE--------P 252 (417)
Q Consensus 208 -------------------~p~~~~~~~li~~~~~---~g~~~~~~~~~~~~a~~~~~~m~~-----~g~~--------p 252 (417)
+.+...+......+.. .|+ +++|..+|+++.+ ..-. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES--------YDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTH--------HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcc--------HHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 0012233333333333 677 9999999999987 3112 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLV 332 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 332 (417)
+..++..+...+...|++++|...++.+.+. . |+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 3567788889999999999999999999773 2 448889999999999999999999999998764 33677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
..|...|++++|...++++.+.. +.+...+..+...|...|++++|..+++++.+....+...+..+...+.+.
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 99999999999999999999863 335678889999999999999999999999887554667777777766655
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.7e-14 Score=129.64 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=204.0
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860 109 NVMTLQEDPLVCLELFNWASKQPRFRHDA--STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA 186 (417)
Q Consensus 109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 186 (417)
+-.-..|++..|+..++.... ..|+. .....+.+++...|++++|...++. . .. |+..++..+...+...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~-~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SA-PELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SC-HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CC-hhHHHHHHHHHHHcCC
Confidence 344567999999999977632 23443 4556678999999999999876643 2 22 6788899999999999
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860 187 RKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI 265 (417)
Q Consensus 187 g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 265 (417)
|+.++|++.++++... +..| +...+..+...+...|+ +++|++.+++ +.+...+..+...|.
T Consensus 79 ~~~~~A~~~l~~ll~~---~~~P~~~~~~~~la~~~~~~g~--------~~~Al~~l~~------~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 79 SRRDAIVAELDREMSR---SVDVTNTTFLLMAASIYFYDQN--------PDAALRTLHQ------GDSLECMAMTVQILL 141 (291)
T ss_dssp TTHHHHHHHHHHHHHS---CCCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHTT------CCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 9999999999999875 4434 56667778899999999 9999999987 467889999999999
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 266 LSNHVNDALRIFHQMGVVYNYLPNSFSY---DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
+.|++++|.+.|+.+.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|+++
T Consensus 142 ~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999999873 2553211 22334444568999999999999987 4558899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHHCCC
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGE-AMKLLKELQNKNL 391 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~ 391 (417)
+|...|++..+. -+-+..++..++..+...|+.++ +.++++++.+.+.
T Consensus 218 eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 218 AAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999998886 24477789999999999999876 6789999988764
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.68 E-value=6e-14 Score=136.96 Aligned_cols=75 Identities=7% Similarity=-0.036 Sum_probs=60.1
Q ss_pred ChhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 014860 87 DDTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQM 163 (417)
Q Consensus 87 ~~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 163 (417)
+...+.+.+...|+. ..+..+..++...|++++|++.|+.+.+.. +.+..++..+..++...|++++|.+.++.+
T Consensus 44 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 119 (537)
T 3fp2_A 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL 119 (537)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566688888877655 456677888889999999999999987654 557888899999999999999998887533
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.68 E-value=5.2e-14 Score=137.40 Aligned_cols=269 Identities=10% Similarity=0.026 Sum_probs=220.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
+..+...+.+.|++++|++.|+.+.+.. +.+...+..+..++...|++++|.+.++.+.+..+ .+...+..+..+|
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 103 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHH
Confidence 4556777889999999999999997654 56899999999999999999999999999998764 6788999999999
Q ss_pred HHhCCHHHHHHHHHHhHhCCC-----------------------------------------------------------
Q 014860 184 AEARKLSRAVYVFKYMKNSRN----------------------------------------------------------- 204 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~----------------------------------------------------------- 204 (417)
...|++++|...|+.+...++
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 999999999988753311100
Q ss_pred ---------------------------------------------CCCCCC--------HHHHHHHHHHHHhcCCccchh
Q 014860 205 ---------------------------------------------LECRPS--------IRSYNILFTAFLSRGKNTYIN 231 (417)
Q Consensus 205 ---------------------------------------------~g~~p~--------~~~~~~li~~~~~~g~~~~~~ 231 (417)
....|+ ..+|..+...+...|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~----- 258 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN----- 258 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc-----
Confidence 001111 2235555566777788
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860 232 HVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARE 311 (417)
Q Consensus 232 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 311 (417)
+++|.+.|++..+. .|+..++..+...+...|++++|.+.++...+.. +.+..+|..+...+...|++++|..
T Consensus 259 ---~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 259 ---LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp ---HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999986 4668889999999999999999999999987632 3467889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 312 LCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 312 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.+++..+.... +...+..+..+|...|++++|..+++++.+.. +.+...+..+...|...|++++|.+.|++..+..
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999876422 56789999999999999999999999999863 4456788899999999999999999999987654
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=4e-14 Score=128.75 Aligned_cols=253 Identities=9% Similarity=-0.069 Sum_probs=207.5
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...+......+...|++++|..+++.+.+... .+...+..+...+.+.|++++|.+.|+++.+. .+.+..+|.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHH
Confidence 344566677788899999999999999988754 57889999999999999999999999999886 245788899
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHh
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM--------------IK-GYILSNHVNDALRIFHQM 280 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m 280 (417)
.+...+...|+ +++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++.+
T Consensus 94 ~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 94 ALAVSHTNEHN--------ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 99999999999 999999999999764 2223333333 22 377889999999999998
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 014860 281 GVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF 360 (417)
Q Consensus 281 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 360 (417)
.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+.
T Consensus 165 ~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 240 (327)
T 3cv0_A 165 LEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYV 240 (327)
T ss_dssp HHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 7732 3478899999999999999999999999998763 3367889999999999999999999999998863 3467
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC------------ChhhHHHHHHHHHhh
Q 014860 361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLI------------DGYTYTKLLDVLEDD 407 (417)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p------------~~~t~~~ll~~~~~~ 407 (417)
..+..+...|...|++++|.+.+++....... +...|..+..++.+.
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 88999999999999999999999998876432 356777777777665
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=3.3e-16 Score=145.07 Aligned_cols=224 Identities=8% Similarity=0.065 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT 178 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 178 (417)
+.+..|..+..++...+++++|++.|.+. +|..+|..++.++...|++++|...++...+. . +++.+.+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~-~~~~i~~~ 99 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A-RESYVETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C-ccchhHHH
Confidence 33445555555555555555555555321 34445555555555555555555544443332 1 33444555
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
++.+|.+.|+++++.++++ .|+..+|+.+...|...|. +++|...|..+ ..|.
T Consensus 100 Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~--------yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKM--------YDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ---------CHHHHTTTTT----------CC----------------C--------TTTHHHHHHHT---------TCHH
T ss_pred HHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHh---------hhHH
Confidence 5555555555555544442 1333455555555555555 55555555543 2455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN 338 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 338 (417)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHC
Confidence 5555555555555555555544 2344555555555555555555332222 111222233445555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860 339 GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR 372 (417)
Q Consensus 339 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 372 (417)
|++++|..+++...... +-....|+-|-.+|++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 55555555555444321 2233344444444443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=5.6e-14 Score=126.29 Aligned_cols=239 Identities=14% Similarity=0.081 Sum_probs=193.5
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR 224 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~ 224 (417)
+-....|++++|++..+........ ........+.++|...|+++.|+..++.. -+|+..++..+...+...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKPS-------SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhccc-------CChhHHHHHHHHHHHcCC
Confidence 4455789999999998876554321 11345567889999999999999866542 256788899999999999
Q ss_pred CCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc
Q 014860 225 GKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ 303 (417)
Q Consensus 225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 303 (417)
++ .++|++.++++...+..|+ ...+..+-..+...|++++|.+.++. ..+...+..+...|.+.
T Consensus 79 ~~--------~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 79 SR--------RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp TT--------HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHT
T ss_pred Cc--------HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHC
Confidence 99 9999999999998876564 55666677899999999999999987 37788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860 304 GRTKNARELCDEMKRKGFVPSSKSY---NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM 380 (417)
Q Consensus 304 g~~~~A~~l~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 380 (417)
|++++|.+.++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.
T Consensus 144 g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999864 553211 23344455669999999999999987 5668889999999999999999999
Q ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhcC
Q 014860 381 KLLKELQNKNLIDGYTYTKLLDVLEDDFG 409 (417)
Q Consensus 381 ~~~~~m~~~~~p~~~t~~~ll~~~~~~~~ 409 (417)
..|++......-+..++..+...+...+.
T Consensus 221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 221 GVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999998875588888888877776633
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.7e-13 Score=120.14 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IR 212 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~ 212 (417)
...+..+...+...|++++|.+.++...+.. .+...+..+..+|...|++++|+..|++..+... ...++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR-EMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccccchHHHHH
Confidence 4567788889999999999999999998876 5678999999999999999999999999887410 01112 58
Q ss_pred HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860 213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292 (417)
Q Consensus 213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 292 (417)
+|..+...+...|+ +++|.+.|++..+.. |+. ..+.+.|++++|.+.++.+... .+.+...
T Consensus 81 ~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 141 (258)
T 3uq3_A 81 SFARIGNAYHKLGD--------LKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEE 141 (258)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHccc--------HHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHH
Confidence 89999999999999 999999999998853 443 3566778999999999998762 2235677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR 372 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 372 (417)
+..+...+...|++++|...+++..+.. +.+..+|..+..+|...|++++|...+++..+.. +.+...|..+...|..
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence 8889999999999999999999998764 3368899999999999999999999999998863 4457889999999999
Q ss_pred cCCHhHHHHHHHHHHHCC
Q 014860 373 RGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~ 390 (417)
.|++++|.+.+++..+..
T Consensus 220 ~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 220 VKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC
Confidence 999999999999988765
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=8.2e-15 Score=135.78 Aligned_cols=240 Identities=10% Similarity=0.071 Sum_probs=103.9
Q ss_pred hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHH
Q 014860 112 TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSR 191 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 191 (417)
.+.|+.++|.++++.+ +++.+|..+..++.+.|++++|.+.|.+. +|..+|..++..+...|++++
T Consensus 14 ~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHH
Confidence 4567899999999877 23459999999999999999999999652 677799999999999999999
Q ss_pred HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 192 AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN 271 (417)
Q Consensus 192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 271 (417)
|+++++...+. .++..+.+.++.+|.+.|+ ++++.++++ .|+..+|+.+...|...|+++
T Consensus 80 Ai~yl~~ark~-----~~~~~i~~~Li~~Y~Klg~--------l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 80 LVKYLQMARKK-----ARESYVETELIFALAKTNR--------LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp ----------------------------------C--------HHHHTTTTT-------CC----------------CTT
T ss_pred HHHHHHHHHHh-----CccchhHHHHHHHHHHhCC--------HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHH
Confidence 99988777764 4567889999999999999 999988884 377789999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 272 DALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEM 351 (417)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (417)
+|...|..+. .|..++.++.+.|++++|.+.+.++ .+..+|..++.+|+..|+++.|......
T Consensus 140 eA~~~Y~~a~----------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~- 202 (449)
T 1b89_A 140 AAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 202 (449)
T ss_dssp THHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred HHHHHHHHhh----------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence 9999999883 5999999999999999999999988 2889999999999999999999665543
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860 352 IEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 352 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
+..++.-...++..|.+.|++++|..+++.-....--....|.-|--.+++
T Consensus 203 ----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 203 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp ----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred ----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 333555566799999999999999999998876652245555555444443
No 30
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.7e-14 Score=125.07 Aligned_cols=249 Identities=9% Similarity=-0.048 Sum_probs=189.5
Q ss_pred hccCChhHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860 112 TLQEDPLVCLELFNWASKQPRFR--HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL 189 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 189 (417)
...+++++|++.|+.+.+..... .+...+..+...+...|++++|.+.++.+.+... .+..++..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCH
Confidence 34578999999999987653222 2567788888999999999999999999988764 5788999999999999999
Q ss_pred HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH 269 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 269 (417)
++|...|++..+. .+.+..+|..+...+...|+ +++|.+.|+++.+.. |+.......+..+...|+
T Consensus 94 ~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 94 DAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGR--------DKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLD 159 (275)
T ss_dssp HHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc----CccccHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcC
Confidence 9999999999885 23457889999999999999 999999999998753 555555556666677899
Q ss_pred HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 014860 270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP---SSKSYNSLVSALALNGEVEETVK 346 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~ 346 (417)
+++|...++...... +++...+. ++..+...++.++|...+.+........ +..++..+...|...|++++|..
T Consensus 160 ~~~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp HHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence 999999997776532 23333443 6677778888899999998876542211 15778888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 014860 347 NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLL 383 (417)
Q Consensus 347 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 383 (417)
.|++..+. .|+. +.....++...|++++|++.+
T Consensus 237 ~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 237 LFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99998875 3432 333355677788888887765
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=1.6e-12 Score=113.73 Aligned_cols=200 Identities=9% Similarity=-0.020 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
...+..+...+...|++++|.+.++.+.+... .+...+..+...|.+.|++++|.+.|+++.+. .+.+...|..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALAS----DSRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCcHHHHHH
Confidence 34445555555555555555555555555432 34455555555555555555555555555443 1223445555
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY 295 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 295 (417)
+...+...|+ +++|.++|+++.+.+..| +...+..+...+...|++++|.+.++...+.. +.+...+..
T Consensus 111 la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 180 (252)
T 2ho1_A 111 YGGFLYEQKR--------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALE 180 (252)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred HHHHHHHHhH--------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHH
Confidence 5555555555 555555555554422222 23344444444555555555555555444311 123344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|.++++++.+
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444444444444444444321 12333444444444444444444444444443
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=2.1e-12 Score=110.51 Aligned_cols=204 Identities=9% Similarity=-0.037 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
+...+..+...+...|++++|.+.|+++.+. .+.+...|..+...+...|+ +++|.+.+++..+.. +
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~ 73 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKV--------NDKAQESFRQALSIK-P 73 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-T
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhC-C
Confidence 3456666667777777777777777776654 13346666777777777777 777777777766543 3
Q ss_pred CCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 252 PDIFSLNSMIKGYILS-NHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN 329 (417)
Q Consensus 252 p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 329 (417)
.+..++..+...+... |++++|.+.++.+.+ .+..| +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 151 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK 151 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence 3556666677777777 777777777777665 22223 35566677777777777777777777776643 22466677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.+..+|...|++++|..+++++.+..-..+...+..+...+...|+.++|..+++.+....
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777777777777777777777665211455666666667777777777777777776543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6e-13 Score=116.52 Aligned_cols=224 Identities=11% Similarity=0.006 Sum_probs=190.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CC----HHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GT----EALYNT 178 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~----~~~~~~ 178 (417)
+..+...+...|++++|+..|+.+.+.. .+...+..+...+...|++++|.+.++...+..... ++ ..++..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4556777889999999999999997654 778999999999999999999999999998754210 12 588999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
+...|.+.|++++|...|++..+. .|+. ..+...|+ +++|.+.++++.+.. +.+...+.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-------~~~~~~~~--------~~~a~~~~~~~~~~~-~~~~~~~~ 143 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE-----HRTA-------DILTKLRN--------AEKELKKAEAEAYVN-PEKAEEAR 143 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CCCH-------HHHHHHHH--------HHHHHHHHHHHHHCC-HHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc-----Cchh-------HHHHHHhH--------HHHHHHHHHHHHHcC-cchHHHHH
Confidence 999999999999999999999986 4553 34666677 999999999998864 34567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN 338 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 338 (417)
.+...+...|++++|.+.++...+.. +.+...|..+...|...|++++|...+++..+.. +.+...|..+..+|...
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999997732 3468889999999999999999999999998764 33688899999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 014860 339 GEVEETVKNLWEMIEK 354 (417)
Q Consensus 339 g~~~~A~~~~~~m~~~ 354 (417)
|++++|...+++..+.
T Consensus 221 g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 221 KEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999998875
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=4.9e-13 Score=114.67 Aligned_cols=200 Identities=14% Similarity=0.007 Sum_probs=135.6
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS 213 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~ 213 (417)
+++...+..+...+.+.|++++|...++...+..+ .+...+..+...+.+.|++++|+..|++..+.. +.+...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVART----PRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHH
Confidence 56778888889999999999999999999998765 678899999999999999999999999998861 345778
Q ss_pred HHHHHHHHHhc-----------CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 214 YNILFTAFLSR-----------GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 214 ~~~li~~~~~~-----------g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
|..+...+... |+ +++|+..|++..+.. +-+...+..+-..+...|++++|.+.|++..+
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGY--------LEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHH--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccC--------HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 88888888887 66 777777777766653 23455666666666677777777777766665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 283 VYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352 (417)
Q Consensus 283 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 352 (417)
.. .+...+..+...|...|++++|...|++..+.. +-+...+..+...+...|+.++|...|++..
T Consensus 147 -~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 -LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred -cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 23 556666666666666667776666666666542 1245566666666666666666666665543
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.9e-12 Score=112.08 Aligned_cols=202 Identities=9% Similarity=-0.041 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP 252 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p 252 (417)
...+..+...|...|++++|...|+++.+. .+.+...|..+...+...|+ +++|.+.|+++.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~-~~ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEME--------PKLADEEYRKALASD-SR 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-cC
Confidence 455666666667777777777777766654 13355666666777777777 777777777666543 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSL 331 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 331 (417)
+...+..+...|...|++++|.+.++++.. .+..| +...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 181 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEM 181 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 556666666677777777777777776654 22233 45556666666777777777777777666543 2245666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 332 VSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
...|...|++++|..+++++.+. .+.+...+..+...+...|+.++|.++++++.+..
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777777777777777766654 23455566666666677777777777777766653
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.7e-12 Score=113.61 Aligned_cols=250 Identities=10% Similarity=-0.047 Sum_probs=171.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF 218 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li 218 (417)
.+......+...|++++|.+.++...+..+ .+...+..+...|.+.|++++|+..|++..+.. ........+|..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHH
Confidence 344555667778888888888888877654 345577777778888888888888888887741 11122245577888
Q ss_pred HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860 219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH 298 (417)
Q Consensus 219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 298 (417)
..+...|+ +++|.+.|++..+.. +.+..++..+...|...|++++|.+.+++..+. .+.+...|..+..
T Consensus 82 ~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~ 150 (272)
T 3u4t_A 82 KILMKKGQ--------DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQ 150 (272)
T ss_dssp HHHHHTTC--------HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHH
T ss_pred HHHHHccc--------HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHH
Confidence 88888888 888888888877654 335567788888888888888888888877652 2345566666662
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CCCCC------HHHHHHHHH
Q 014860 299 GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEK-QRPVD------FITYRTVLD 368 (417)
Q Consensus 299 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~------~~~~~~li~ 368 (417)
.+...+++++|.+.|++..+.. +.+...+..+..++...|+ .++|...+++..+. .-.|+ ...|..+..
T Consensus 151 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 229 (272)
T 3u4t_A 151 AYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 4444558888888888887653 2246677777777777777 77777777777664 11233 246777777
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHH
Q 014860 369 EICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDV 403 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~ 403 (417)
.|...|++++|.+.|++..+...-+...+..+-..
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 88888888888888888887764355544444333
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=2.2e-11 Score=108.06 Aligned_cols=225 Identities=10% Similarity=-0.020 Sum_probs=190.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSI 211 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~ 211 (417)
+..++..+...+...|++++|.+.++...+. .+...+..+...|.. .+++++|...|++..+. + +.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~---~~ 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---N---YS 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---C---CH
Confidence 6677778888888899999999999998883 456788888888999 99999999999998886 3 67
Q ss_pred HHHHHHHHHHHh----cCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhh
Q 014860 212 RSYNILFTAFLS----RGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVV 283 (417)
Q Consensus 212 ~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 283 (417)
..+..+...|.. .++ .++|++.|++..+.+ +...+..+-..|.. .+++++|.+.|+...+
T Consensus 75 ~a~~~lg~~~~~g~~~~~~--------~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~- 142 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQN--------TNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD- 142 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCCcccC--------HHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-
Confidence 888888888888 888 999999999988875 67788888888888 8999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 014860 284 YNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQ 355 (417)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 355 (417)
.+ +...+..+-..|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+
T Consensus 143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 33 66777788888887 899999999999988875 56788888889999 999999999999988874
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCC
Q 014860 356 RPVDFITYRTVLDEICR----RGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 356 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 391 (417)
+...+..+...|.. .++.++|.+.|++..+.+.
T Consensus 217 ---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 217 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 36677788888888 8999999999999988874
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1e-12 Score=112.71 Aligned_cols=200 Identities=12% Similarity=0.027 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI 250 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~ 250 (417)
++...+..+...+.+.|++++|+..|++..+. -+.+...|..+...+.+.|+ +++|+..|++..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~- 69 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGL--------VNPALENGKTLVART- 69 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-
Confidence 56778899999999999999999999999875 24568889999999999999 999999999998875
Q ss_pred CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 251 EPDIFSLNSMIKGYILS-----------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
+-+...+..+-..+.+. |++++|...|++..+.. +-+...|..+-..+...|++++|...|++..+.
T Consensus 70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 44677888999999999 99999999999987631 245788899999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
. .+...+..+..+|...|++++|...|++..+. -+-+...+..+...+.+.|++++|.+.|++...
T Consensus 148 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 148 E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC----------------
T ss_pred c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 7 68899999999999999999999999999886 234677888899999999999999999887654
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=3.1e-12 Score=109.43 Aligned_cols=211 Identities=8% Similarity=-0.051 Sum_probs=171.1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY 214 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~ 214 (417)
.+...+..+...+...|++++|.+.++.+.+... .+...+..+...|...|++++|.+.|+++.+. .+.+..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~ 79 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChHHH
Confidence 4567778888888999999999999999888654 56788889999999999999999999998875 24467888
Q ss_pred HHHHHHHHhc-CCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860 215 NILFTAFLSR-GKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292 (417)
Q Consensus 215 ~~li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 292 (417)
..+...+... |+ +++|.+.++++.+.+..|+ ...+..+...+...|++++|.+.++.+.+.. +.+...
T Consensus 80 ~~l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 149 (225)
T 2vq2_A 80 NNYGWFLCGRLNR--------PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPA 149 (225)
T ss_dssp HHHHHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHH
T ss_pred HHHHHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchH
Confidence 8899999999 99 9999999999887333343 5678888889999999999999999887632 345788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITY 363 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 363 (417)
+..+...+...|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+...+
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 88899999999999999999999887543247778888888889999999999999988764 3444433
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.2e-12 Score=113.76 Aligned_cols=200 Identities=11% Similarity=0.057 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
..|..+...+.+.|++++|...|+++.+. .+.+...+..+...+...|+ +++|.+.|++..+.. +.+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~ 90 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNE--------LERALAFYDKALELD-SSA 90 (243)
T ss_dssp ------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-Ccc
Confidence 34444445555555555555555555442 12234455555555555555 555555555554432 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
..++..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 4455555555555555555555555554411 2344455555555556666666666665555432 124555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 334 ALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 334 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.|...|++++|...++++.+.. +.+..++..+...|...|++++|.+.+++..+..
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 6666666666666666665541 2345556666666666666666666666666554
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=3.3e-12 Score=118.83 Aligned_cols=255 Identities=9% Similarity=0.036 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK-LSRAVYVFKYMKNSRNLECRPSIRSY 214 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~g~~p~~~~~ 214 (417)
+...|..+...+...|++++|.+.++..++... .+...|+.+..++.+.|+ +++|+..|++..+. -+-+...|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~~a~ 169 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCHHHH
Confidence 345566666777778888888888888877654 567778888888888886 88888888888775 13356778
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD 294 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 294 (417)
+.+-..+...|+ +++|+..|+++.+.. +-+...|..+-.++.+.|++++|+..++++.+. . +-+...|+
T Consensus 170 ~~~g~~~~~~g~--------~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-~-P~~~~a~~ 238 (382)
T 2h6f_A 170 HHRRVLVEWLRD--------PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-D-VRNNSVWN 238 (382)
T ss_dssp HHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C-TTCHHHHH
T ss_pred HHHHHHHHHccC--------HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CCCHHHHH
Confidence 888888888888 888888888887764 346677777888888888888888888887662 1 24567777
Q ss_pred HHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014860 295 YLIHGLCA-QGRTKNA-----RELCDEMKRKGFVPSSKSYNSLVSALALNG--EVEETVKNLWEMIEKQRPVDFITYRTV 366 (417)
Q Consensus 295 ~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l 366 (417)
.+..++.. .|..++| +..+++....... +...|+.+...+...| +.++|.+.+.++ ...+.+...+..+
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~L 315 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFL 315 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHH
Confidence 77777777 5554666 4667776664322 5677777777777777 578888888777 2234456677778
Q ss_pred HHHHHHcC---------CHhHHHHHHHHH-HHCCCCChhhHHHHHHHHHhhcCc
Q 014860 367 LDEICRRG---------RAGEAMKLLKEL-QNKNLIDGYTYTKLLDVLEDDFGN 410 (417)
Q Consensus 367 i~~~~~~g---------~~~~A~~~~~~m-~~~~~p~~~t~~~ll~~~~~~~~~ 410 (417)
...|.+.| ..++|.++|+++ .+.+.....-|..+...+...++.
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~~~ 369 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST 369 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhcc
Confidence 77887764 257888888888 555444566777777777665443
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.4e-12 Score=113.29 Aligned_cols=201 Identities=9% Similarity=0.047 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
....|..+...+...|++++|...++.+.+... .+...+..+...|.+.|++++|.+.|+++.+. .+.+...|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALEL----DSSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcchHHHH
Confidence 344455555555566666666666666655433 34556666666666666666666666666553 123455566
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY 295 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 295 (417)
.+...+...|+ +++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .+.+...+..
T Consensus 96 ~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 164 (243)
T 2q7f_A 96 GAGNVYVVKEM--------YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQ 164 (243)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHH
Confidence 66666666666 666666666665543 334555666666666666666666666665542 1234556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666666666666666665542 224556666666777777777777777666654
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=1.9e-12 Score=114.65 Aligned_cols=236 Identities=12% Similarity=-0.046 Sum_probs=188.3
Q ss_pred HccCChhHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860 148 GAAKMYQEMDDVVNQMLATPSFC--GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG 225 (417)
Q Consensus 148 ~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g 225 (417)
...|++++|.+.++.+.+..... .+..++..+...|...|++++|...|+++.+. .+.+..+|..+...+...|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcc
Confidence 35688999999999999874321 25678899999999999999999999999986 2446889999999999999
Q ss_pred CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860 226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR 305 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 305 (417)
+ +++|.+.|++..+.. +.+..++..+...|.+.|++++|.+.|+.+.+. .|+.......+..+...|+
T Consensus 92 ~--------~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 92 N--------FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLD 159 (275)
T ss_dssp C--------HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHC
T ss_pred C--------HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcC
Confidence 9 999999999999864 346788999999999999999999999999773 3554455555566677899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHHcCCHhHHHHH
Q 014860 306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP--V-DFITYRTVLDEICRRGRAGEAMKL 382 (417)
Q Consensus 306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~ 382 (417)
+++|...+++..... +++...+. ++..+...++.++|...+.+..+.... | +...|..+...|.+.|++++|...
T Consensus 160 ~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998877653 33444444 777788889999999999988765211 1 146788899999999999999999
Q ss_pred HHHHHHCCCCChhhHHHHH
Q 014860 383 LKELQNKNLIDGYTYTKLL 401 (417)
Q Consensus 383 ~~~m~~~~~p~~~t~~~ll 401 (417)
|++....+..+...+...+
T Consensus 238 ~~~al~~~p~~~~~~~~~~ 256 (275)
T 1xnf_A 238 FKLAVANNVHNFVEHRYAL 256 (275)
T ss_dssp HHHHHTTCCTTCHHHHHHH
T ss_pred HHHHHhCCchhHHHHHHHH
Confidence 9999987643555554333
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.6e-11 Score=108.56 Aligned_cols=247 Identities=9% Similarity=0.042 Sum_probs=193.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CCHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GTEALYNTIIYF 182 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~ 182 (417)
+-.....+...|+++.|+..|+.+.+.. +.+...+..+...+...|++++|.+.++...+.+... .....|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455677789999999999999997654 3456688888899999999999999999999854221 124458999999
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK 262 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 262 (417)
|.+.|++++|++.|++..+. .+.+..+|..+...+...|+ +++|.+.|++..+.. +.+..++..+..
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~~~l~~ 150 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGN--------FPLAIQYMEKQIRPT-TTDPKVFYELGQ 150 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTC--------HHHHHHHHGGGCCSS-CCCHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHccC--------HHHHHHHHHHHhhcC-CCcHHHHHHHHH
Confidence 99999999999999999885 23456889999999999999 999999999988763 445667776663
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR---TKNARELCDEMKRKG-FVPS------SKSYNSLV 332 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~~~~~li 332 (417)
.+...+++++|.+.|+...+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+.
T Consensus 151 ~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 151 AYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 4445569999999999997732 2346778888888888888 888888888877541 1233 25788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014860 333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD 368 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 368 (417)
..|...|++++|.+.|++..+.. +-+...+..+-.
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 99999999999999999999862 234444444433
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.4e-10 Score=102.70 Aligned_cols=220 Identities=8% Similarity=-0.053 Sum_probs=192.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMYQEMDDVVNQMLATPSFCGTEALYNTI 179 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 179 (417)
+..+...+...+++++|++.|+...+ +-+...+..+...+.. .+++++|.+.+++..+.+ +...+..+
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l 80 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHH
Confidence 44566677888999999999999975 3467888888899999 999999999999999874 67889999
Q ss_pred HHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh----cCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 180 IYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS----RGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 180 i~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
...|.. .+++++|+..|++..+. + +..++..+-..|.. .++ .++|++.|++..+.+
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~---~---~~~a~~~lg~~~~~~~~~~~~--------~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDL---K---YAEGCASLGGIYHDGKVVTRD--------FKKAVEYFTKACDLN-- 144 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHCSSSCCC--------HHHHHHHHHHHHHTT--
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHc---C---CccHHHHHHHHHHcCCCcccC--------HHHHHHHHHHHHhcC--
Confidence 999999 99999999999999986 2 78889999999999 899 999999999999876
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 014860 252 PDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVP 323 (417)
Q Consensus 252 p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p 323 (417)
+...+..+-..|.. .+++++|.+.|+...+ . .+...+..+...|.. .+++++|...|++..+.+
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 216 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--- 216 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---
Confidence 56777888888888 9999999999999887 3 356788888899999 999999999999999875
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 014860 324 SSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQ 355 (417)
Q Consensus 324 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 355 (417)
+...+..+-..|.+ .++.++|.+.|++..+.|
T Consensus 217 ~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 37788888899998 999999999999998875
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.9e-11 Score=113.72 Aligned_cols=246 Identities=11% Similarity=0.000 Sum_probs=201.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKM-YQEMDDVVNQMLATPSFCGTEALYNTIIYF 182 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 182 (417)
|..+..++...|++++|++.|+.+.+.. +-+...|..+..++...|+ +++|.+.+++..+... .+...|+.+..+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g~~ 175 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 5566777788999999999999997654 5678999999999999997 9999999999999775 678999999999
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK 262 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 262 (417)
+.+.|++++|+..|+++.+.. +-+...|..+..++...|+ +++|++.|+++.+.. +-+...|+.+-.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld----P~~~~a~~~lg~~~~~~g~--------~~eAl~~~~~al~l~-P~~~~a~~~lg~ 242 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKL--------WDNELQYVDQLLKED-VRNNSVWNQRYF 242 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 999999999999999999862 4478899999999999999 999999999999875 447889999999
Q ss_pred HHHh-cCCHHHH-----HHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 263 GYIL-SNHVNDA-----LRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG--RTKNARELCDEMKRKGFVPSSKSYNSLVSA 334 (417)
Q Consensus 263 ~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 334 (417)
++.+ .|..++| .+.|++..... +-+...|+.+...+...| ++++|.+.+.++ +. ...+...+..+..+
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~ 318 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHH
Confidence 9998 6665777 47777776521 346778999998899888 689999999998 33 34467888999999
Q ss_pred HHhcC---------CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHHH
Q 014860 335 LALNG---------EVEETVKNLWEM-IEKQRPVD-FITYRTVLDEICR 372 (417)
Q Consensus 335 ~~~~g---------~~~~A~~~~~~m-~~~g~~p~-~~~~~~li~~~~~ 372 (417)
|.+.| ..++|.++++++ .+. .|. ...|..+...+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 98874 358999999998 543 344 3456666555543
No 47
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.44 E-value=3.1e-09 Score=102.63 Aligned_cols=256 Identities=12% Similarity=0.009 Sum_probs=145.7
Q ss_pred CCCCHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHcCCCCCC
Q 014860 100 PRFNNEELCNVMTL----QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMYQEMDDVVNQMLATPSFCG 171 (417)
Q Consensus 100 ~~~~~~~ll~~l~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~ 171 (417)
+...+..+...+.. .+++++|++.|+...+. -+...+..+...+.. .+++++|.+.++...+.+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 145 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---- 145 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 33345555555655 67777787777777543 255666666666666 667777777777776653
Q ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh----cCCccchhhhhHHHHHHHHH
Q 014860 172 TEALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS----RGKNTYINHVYMETIRCLFK 243 (417)
Q Consensus 172 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~ 243 (417)
+...+..|...|.. .+++++|++.|++..+. | +...+..+-..|.. .++ .++|.+.|+
T Consensus 146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~--------~~~A~~~~~ 211 (490)
T 2xm6_A 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---G---NVWSCNQLGYMYSRGLGVERN--------DAISAQWYR 211 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHhcCCCCCcC--------HHHHHHHHH
Confidence 44566666666666 56777777777777664 2 55666666666665 556 667777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 014860 244 QMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDE 315 (417)
Q Consensus 244 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~ 315 (417)
+..+.| +...+..+-..|.. .+++++|.+.|+...+ . .+...+..+-..|.. .++.++|..+|++
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-Q---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-T---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 666554 34455555555554 5566666666666554 1 233444444444444 5555556655555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHH
Q 014860 316 MKRKGFVPSSKSYNSLVSALALN-----GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG---RAGEAMKLLKELQ 387 (417)
Q Consensus 316 m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~ 387 (417)
..+.| +...+..|-..|... ++.++|..+|++..+.| +...+..+-..|...| +.++|.+.|++..
T Consensus 285 a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 285 SAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 55443 334444444555444 55555555555555443 2333444444444333 4444555554444
Q ss_pred HCC
Q 014860 388 NKN 390 (417)
Q Consensus 388 ~~~ 390 (417)
+.+
T Consensus 359 ~~~ 361 (490)
T 2xm6_A 359 AKG 361 (490)
T ss_dssp HTT
T ss_pred HCC
Confidence 443
No 48
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.43 E-value=4.3e-09 Score=101.61 Aligned_cols=270 Identities=10% Similarity=0.034 Sum_probs=221.6
Q ss_pred CCCCHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHcCCCCCC
Q 014860 100 PRFNNEELCNVMTL----QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMYQEMDDVVNQMLATPSFCG 171 (417)
Q Consensus 100 ~~~~~~~ll~~l~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~ 171 (417)
+......+...+.. .++++.|++.|+...+. -+...+..+...+.. .+++++|.+.++...+.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 33344555566655 78999999999998754 367888888888888 899999999999998864
Q ss_pred CHHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh----cCCccchhhhhHHHHHHHHH
Q 014860 172 TEALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS----RGKNTYINHVYMETIRCLFK 243 (417)
Q Consensus 172 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~ 243 (417)
+...+..|...|.. .+++++|++.|++..+. | +...+..+-..|.. .++ .++|.+.|+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~d--------~~~A~~~~~ 175 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---G---RDSGQQSMGDAYFEGDGVTRD--------YVMAREWYS 175 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCC--------HHHHHHHHH
Confidence 56778888899988 78999999999999886 2 57778888888887 677 999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 014860 244 QMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDE 315 (417)
Q Consensus 244 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~ 315 (417)
+..+.| +...+..+-..|.. .++.++|.+.|+...+ . .+...+..+...|.. .+++++|..+|++
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-S---GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 999875 67788888888887 8999999999999887 3 466778888888876 8899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHH
Q 014860 316 MKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR-----GRAGEAMKLLKEL 386 (417)
Q Consensus 316 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m 386 (417)
..+.| +...+..+-..|.. .++.++|.++|++..+.| +...+..|-..|... ++.++|...|++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98875 56777788888888 899999999999998775 566777888888887 8999999999999
Q ss_pred HHCCCCChhhHHHHHHHHHh
Q 014860 387 QNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 387 ~~~~~p~~~t~~~ll~~~~~ 406 (417)
.+.+ +...+..+-..+.+
T Consensus 323 ~~~~--~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 323 AEQG--DATAQANLGAIYFR 340 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHH
T ss_pred HhcC--CHHHHHHHHHHHHh
Confidence 9987 44455555444443
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=1.9e-10 Score=104.02 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=126.3
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-------ccCCh-------hHHHHHHHHHHcC-CCCCCCHHHHHHHHHH
Q 014860 118 LVCLELFNWASKQPRFRHDASTYHIMTRKLG-------AAKMY-------QEMDDVVNQMLAT-PSFCGTEALYNTIIYF 182 (417)
Q Consensus 118 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~-~~~~~~~~~~~~li~~ 182 (417)
+.|+.+|+.+.+.. +.+...|......+. +.|++ ++|..++++..+. .. .+...|..++..
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p--~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence 46666666665433 446666666665554 24664 6677777777663 32 355566667777
Q ss_pred HHHhCCHHHHHHHHHHhHhCCCCCCCCC-HH-HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 183 FAEARKLSRAVYVFKYMKNSRNLECRPS-IR-SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~-~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|+ +++|.++|++..+.. +.+...|...
T Consensus 109 ~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~-p~~~~~~~~~ 174 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDA-RTRHHVYVTA 174 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHhc-----cccCccHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 77777777777777776654 332 22 56666666666666 677777777666543 2233333322
Q ss_pred HHHH-HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHH
Q 014860 261 IKGY-ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG-FVP--SSKSYNSLVSALA 336 (417)
Q Consensus 261 i~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~li~~~~ 336 (417)
.... ...|+.++|.++|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2221 12466666666666665421 2345566666666666666666666666666542 233 3455666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 014860 337 LNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~ 354 (417)
+.|+.++|..+++++.+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666554
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=7.5e-10 Score=100.11 Aligned_cols=219 Identities=11% Similarity=-0.001 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHhHhCCCCCCCC-CHHHHHHHH
Q 014860 154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAE-------ARKL-------SRAVYVFKYMKNSRNLECRP-SIRSYNILF 218 (417)
Q Consensus 154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~~~~g~~p-~~~~~~~li 218 (417)
++|..+|++..+..+ .+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..+.
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----~~p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----LLKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----TTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH----hCcccHHHHHHHH
Confidence 678889999988654 678888888888764 5886 9999999999972 244 567899999
Q ss_pred HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 014860 219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-IF-SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL 296 (417)
Q Consensus 219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 296 (417)
..+...|+ +++|.++|++..+. .|+ .. +|..+...+.+.|++++|..+|++..+. . +.+...|...
T Consensus 107 ~~~~~~~~--------~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~ 174 (308)
T 2ond_A 107 DYEESRMK--------YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTA 174 (308)
T ss_dssp HHHHHTTC--------HHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-TCCTHHHHHH
T ss_pred HHHHhcCC--------HHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCCHHHHHHH
Confidence 99999999 99999999999985 454 33 8999999999999999999999999762 2 2344455444
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHH
Q 014860 297 IHGLC-AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ-RPV--DFITYRTVLDEICR 372 (417)
Q Consensus 297 i~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~ 372 (417)
..... ..|++++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 33322 3699999999999988753 2368889999999999999999999999999863 455 46788999999999
Q ss_pred cCCHhHHHHHHHHHHHCCC
Q 014860 373 RGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~ 391 (417)
.|+.++|..+++++.+...
T Consensus 254 ~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHcc
Confidence 9999999999999988654
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.6e-11 Score=115.52 Aligned_cols=282 Identities=11% Similarity=0.022 Sum_probs=204.7
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCCHHHHH
Q 014860 106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDA----STYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGTEALYN 177 (417)
Q Consensus 106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ 177 (417)
.+...+...|++++|+..|+.+.+.. +.+. ..+..+...+...|++++|.+.+++..+. +.......++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 45566788999999999999997653 2343 57888888999999999999999988764 11113457888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHhCCC-CC-CCCCHHHHHHHHHHHHhcCC----------ccchhhhhHHHHHHHHHHH
Q 014860 178 TIIYFFAEARKLSRAVYVFKYMKNSRN-LE-CRPSIRSYNILFTAFLSRGK----------NTYINHVYMETIRCLFKQM 245 (417)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~g-~~p~~~~~~~li~~~~~~g~----------~~~~~~~~~~~a~~~~~~m 245 (417)
.+...|...|++++|...|++..+... .+ ......++..+...|...|+ ...... .+++|++.+++.
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~-~~~~A~~~~~~a 209 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE-ALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH-HHHHHHHHHHHH
Confidence 999999999999999999998765300 00 11234567777778877775 111111 156677776665
Q ss_pred HHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 246 VND----GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHGLCAQGRTKNARELCDEM 316 (417)
Q Consensus 246 ~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m 316 (417)
.+. +- .....++..+...|...|++++|.+.+++..+...-..+ ...+..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 431 11 122357788889999999999999999987552111122 337888999999999999999999887
Q ss_pred HHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 317 KRKGF--V---PSSKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPV-DFITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 317 ~~~g~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
.+... . ....++..+...|...|++++|..++++..+. +..+ ...++..+...|...|+.++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 75311 1 11567888999999999999999999988764 1111 1347788889999999999999999998
Q ss_pred HHCC
Q 014860 387 QNKN 390 (417)
Q Consensus 387 ~~~~ 390 (417)
.+..
T Consensus 370 l~~~ 373 (411)
T 4a1s_A 370 LQLA 373 (411)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7753
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=2.9e-11 Score=113.21 Aligned_cols=298 Identities=11% Similarity=0.028 Sum_probs=210.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCCHHHH
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHD----ASTYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGTEALY 176 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~ 176 (417)
......+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|...++..... +..+....++
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 345566788999999999999987653 233 367888888999999999999999887653 2111235678
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCC-------------ccchhhhhHHHHH
Q 014860 177 NTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGK-------------NTYINHVYMETIR 239 (417)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~-------------~~~~~~~~~~~a~ 239 (417)
..+...|...|++++|...|++..+.. .-.++ ..++..+...+...|+ ...+. ..+++|.
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~-~~~~~A~ 167 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR-DALQAAV 167 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH-HHHHHHH
Confidence 889999999999999999999876531 00112 3467777777777765 11111 1156677
Q ss_pred HHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 014860 240 CLFKQMVN----DGIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHGLCAQGRTKNAR 310 (417)
Q Consensus 240 ~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 310 (417)
+.+++..+ .+..+ ...++..+...|...|++++|.+.+++..+...-.++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 77666543 22111 2357788889999999999999999987642111122 347888899999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHhHHH
Q 014860 311 ELCDEMKRK----GFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQR-PVD----FITYRTVLDEICRRGRAGEAM 380 (417)
Q Consensus 311 ~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~ 380 (417)
..+++..+. +..+. ..++..+...|...|++++|...+++..+..- ..+ ..++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987643 11111 56788899999999999999999998876411 112 457788888999999999999
Q ss_pred HHHHHHHHC----CC-C-ChhhHHHHHHHHHhh
Q 014860 381 KLLKELQNK----NL-I-DGYTYTKLLDVLEDD 407 (417)
Q Consensus 381 ~~~~~m~~~----~~-p-~~~t~~~ll~~~~~~ 407 (417)
+.+++..+. +- + ...++..+-..+...
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 999987654 22 1 244555555555444
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=2.3e-11 Score=110.42 Aligned_cols=278 Identities=12% Similarity=0.064 Sum_probs=201.3
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCCHHHHHH
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHD----ASTYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGTEALYNT 178 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~~ 178 (417)
....+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|.+.++...+. +..+....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4556678999999999999987653 233 467888889999999999999999887653 111123567888
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCC-------------ccchhhhhHHHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGK-------------NTYINHVYMETIRCL 241 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~-------------~~~~~~~~~~~a~~~ 241 (417)
+...|...|++++|...|++..+.. .-.++ ..++..+...+...|+ ..... ..+++|.+.
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~A~~~ 165 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR-NALQAAVDL 165 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH-HHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH-HHHHHHHHH
Confidence 9999999999999999999876531 00112 3467777777777765 11111 115677777
Q ss_pred HHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 014860 242 FKQMVND----GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP----NSFSYDYLIHGLCAQGRTKNAREL 312 (417)
Q Consensus 242 ~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l 312 (417)
+++..+. +. .....++..+...+...|++++|.+.+++..+...-.+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665431 11 11245778888899999999999999998754211112 234788888999999999999999
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 014860 313 CDEMKRKGF-VPS----SKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPV-DFITYRTVLDEICRRGRAGEAMKL 382 (417)
Q Consensus 313 ~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 382 (417)
+++..+... ..+ ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 998764311 112 567888899999999999999999988764 1111 134677888999999999999999
Q ss_pred HHHHHHC
Q 014860 383 LKELQNK 389 (417)
Q Consensus 383 ~~~m~~~ 389 (417)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998775
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=4.1e-11 Score=115.25 Aligned_cols=216 Identities=11% Similarity=-0.047 Sum_probs=179.1
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 014860 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMY-QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYV 195 (417)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 195 (417)
.+.++..++...... +.+...+..+...+...|++ ++|.+.+++..+... .+...|..+..+|.+.|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 667777787765433 46889999999999999999 999999999998764 5688999999999999999999999
Q ss_pred HHHhHhCCCCCCCCCHHHHHHHHHHHHhc---------CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 196 FKYMKNSRNLECRPSIRSYNILFTAFLSR---------GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL 266 (417)
Q Consensus 196 ~~~m~~~~~~g~~p~~~~~~~li~~~~~~---------g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 266 (417)
|++..+. .|+...|..+...+... |+ +++|++.|++..+.. +-+...|..+..+|..
T Consensus 160 ~~~al~~-----~p~~~~~~~lg~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 160 FSGALTH-----CKNKVSLQNLSMVLRQLQTDSGDEHSRH--------VMDSVRQAKLAVQMD-VLDGRSWYILGNAYLS 225 (474)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHTTCCCSCHHHHHHH--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhh-----CCCHHHHHHHHHHHHHhccCChhhhhhh--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999976 57788899999999998 88 999999999998865 4467888889999988
Q ss_pred c--------CCHHHHHHHHHHhhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 267 S--------NHVNDALRIFHQMGVVYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL 337 (417)
Q Consensus 267 ~--------g~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 337 (417)
. |++++|.+.|++..+... ...+...|..+..+|...|++++|.+.|++..+... -+...+..+..++..
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 8 889999999998876310 003778888899999999999999999998887532 256678888888888
Q ss_pred cCCHHHHHHHHHHH
Q 014860 338 NGEVEETVKNLWEM 351 (417)
Q Consensus 338 ~g~~~~A~~~~~~m 351 (417)
.|++++|.+.+.++
T Consensus 305 lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 305 LSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhccc
Confidence 88888887755443
No 55
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=4.4e-09 Score=102.58 Aligned_cols=164 Identities=7% Similarity=0.031 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 237 TIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN--SFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 237 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
+|.++|++..+.-.+-+...|..+...+.+.|++++|..+|+...+. .|+ ...|...+..+.+.|++++|.++|+
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78888888775222345888999999999999999999999999872 343 3589999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 014860 315 EMKRKGFVPSSKSYNSLVSA-LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLID 393 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 393 (417)
+..+... .+...|...... +...|+.++|..+|++..+. .+-+...|..++..+.+.|+.++|..+|++....+..+
T Consensus 381 ~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 9987632 233334332222 34689999999999998876 23467889999999999999999999999999875422
Q ss_pred ----hhhHHHHHHHHH
Q 014860 394 ----GYTYTKLLDVLE 405 (417)
Q Consensus 394 ----~~t~~~ll~~~~ 405 (417)
...|...++-..
T Consensus 459 ~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 459 PEKSGEIWARFLAFES 474 (530)
T ss_dssp GGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 235666565433
No 56
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=3.4e-09 Score=103.42 Aligned_cols=124 Identities=10% Similarity=0.049 Sum_probs=91.4
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860 91 FRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 91 ~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (417)
+.+.+...|... .|..++. +...|+++.|..+|+.+.+.. +.+...|...+..+.+.|++++|.++|++..+..
T Consensus 2 le~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 345666666554 5677777 467899999999999997654 6788999999999999999999999999998875
Q ss_pred CCCHHHHHHHHHHH-HHhCCHHHHHH----HHHHhHhCCCCCCC-CCHHHHHHHHHHHH
Q 014860 170 CGTEALYNTIIYFF-AEARKLSRAVY----VFKYMKNSRNLECR-PSIRSYNILFTAFL 222 (417)
Q Consensus 170 ~~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~~~~~g~~-p~~~~~~~li~~~~ 222 (417)
|+...|...+... ...|+++.|.+ +|+.....- |.. ++...|...+....
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~--g~~~~~~~~w~~~~~~~~ 132 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI--GMEIMSYQIWVDYINFLK 132 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT--TTSTTCHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHh
Confidence 6777888777533 45677776654 777765531 333 34666776665543
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=6.7e-11 Score=106.44 Aligned_cols=209 Identities=14% Similarity=0.078 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
+..++..+...|...|++++|..+|+++.+.. +...+....++..+...+...|+ +++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~ 97 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence 45678888889999999999999999887620 00112346678899999999999 9999999988875
Q ss_pred C------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 248 D------GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY-----NY-LPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 248 ~------g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
. +- +....++..+...|...|++++|.+.+++..+.. +- ......+..+...+...|++++|.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 22 2345678889999999999999999999887631 22 2345678888999999999999999999
Q ss_pred HHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------
Q 014860 315 EMKRK------GFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK--------------------------------- 354 (417)
Q Consensus 315 ~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------------------- 354 (417)
++.+. +..| ...++..+..+|...|++++|.++++++.+.
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 98764 2223 2457888999999999999999999998863
Q ss_pred ---------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 355 ---------------QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 355 ---------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
..+.+..++..+...|.+.|++++|.+.|++..+
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0122345678888899999999999999988765
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.9e-11 Score=107.34 Aligned_cols=212 Identities=14% Similarity=0.114 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT-------PSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN-- 204 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-- 204 (417)
+.+..++..+...+...|++++|..+++.+.+. ... ....++..+...|...|++++|...|++..+...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345677778888888999999999998888873 111 4567788999999999999999999998876300
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 014860 205 --LECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND------GIEP-DIFSLNSMIKGYILSNHVNDALR 275 (417)
Q Consensus 205 --~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~ 275 (417)
...+....++..+...+...|+ +++|.+.|++..+. +-.| ...++..+...|...|++++|.+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0112346778899999999999 99999999988764 2222 35677888899999999999999
Q ss_pred HHHHhhhhC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 014860 276 IFHQMGVVY-----N-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK------------------------------ 319 (417)
Q Consensus 276 ~~~~m~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------------------------ 319 (417)
.+++..+.. + ......++..+...|...|++++|.+.++++.+.
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 999886620 1 2224567888999999999999999999988752
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 320 ------------------GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 320 ------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
....+..++..+..+|.+.|++++|.++|++..+.
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11223567888999999999999999999987753
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=7.2e-10 Score=91.83 Aligned_cols=167 Identities=14% Similarity=0.070 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860 172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE 251 (417)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~ 251 (417)
+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+...+...|+ +++|...+....... +
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~-~ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLD-T 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-c
Confidence 45566666666777777777777777666541 2345666666666666666 666666666665543 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSL 331 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 331 (417)
-+...+..+...+...++++.|.+.+...... .+.+...+..+...|.+.|++++|++.|++..+... -+..+|..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l 147 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSI 147 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHH
Confidence 34455555556666666666666666665542 123455566666666666666666666666655421 245566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 014860 332 VSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
..+|.+.|++++|.+.|++..+.
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhC
Confidence 66666666666666666666553
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.1e-10 Score=112.35 Aligned_cols=216 Identities=8% Similarity=-0.000 Sum_probs=183.8
Q ss_pred ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccch
Q 014860 152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL-SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYI 230 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~ 230 (417)
.++++.+.++....... .+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~---- 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGD---- 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCC----
Confidence 35677777777766543 6788999999999999999 99999999998862 3458899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHH
Q 014860 231 NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS---------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLC 301 (417)
Q Consensus 231 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 301 (417)
+++|.+.|++..+.. |+...+..+-..|... |++++|.+.|++..+.. +.+...|..+..+|.
T Consensus 153 ----~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 224 (474)
T 4abn_A 153 ----VTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYL 224 (474)
T ss_dssp ----HHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 999999999999874 7778899999999999 99999999999987732 346888999999999
Q ss_pred hc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 302 AQ--------GRTKNARELCDEMKRKGFV--PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 302 ~~--------g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
.. |++++|.+.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+.
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 98 9999999999999885320 378899999999999999999999999998862 335667888889999
Q ss_pred HcCCHhHHHHHHHHH
Q 014860 372 RRGRAGEAMKLLKEL 386 (417)
Q Consensus 372 ~~g~~~~A~~~~~~m 386 (417)
..|++++|.+.+.++
T Consensus 304 ~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 304 FLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998866554
No 61
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.32 E-value=1.2e-09 Score=113.10 Aligned_cols=254 Identities=12% Similarity=0.121 Sum_probs=154.9
Q ss_pred CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860 101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180 (417)
Q Consensus 101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li 180 (417)
......+...+...|.+++|..+|+... -.....+.++. ..+++++|.++.++. .+..+|..+.
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLA 1112 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLA 1112 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHH
Confidence 3445667777778888888888887752 12222333333 566677777776644 3456777777
Q ss_pred HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM 260 (417)
Q Consensus 181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 260 (417)
.++.+.|++++|+..|.+. . |...|.-++..+.+.|+ +++|.+.|...++.. ++....+.+
T Consensus 1113 KAql~~G~~kEAIdsYiKA--d-------D~say~eVa~~~~~lGk--------yEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA--D-------DPSSYMEVVQAANTSGN--------WEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc--C-------ChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhc--ccccccHHH
Confidence 7777777777777777543 1 56667777777777777 777777776655543 333333346
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 340 (417)
..+|++.+++++...+. . .++...|..+-..|...|++++|..+|... ..|..+..+|++.|+
T Consensus 1174 afaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 66677776666433332 1 144455555666666666666666666653 256666666666666
Q ss_pred HHHHHHHHHHHHHc------------------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhh
Q 014860 341 VEETVKNLWEMIEK------------------------QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYT 396 (417)
Q Consensus 341 ~~~A~~~~~~m~~~------------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t 396 (417)
+++|.+.+++.... ++..+...+..++..|.+.|.+++|..+++.-....--....
T Consensus 1237 ~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1237 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 66666655543211 122355567788888889999999999987766544113334
Q ss_pred HHHHHHHHHh
Q 014860 397 YTKLLDVLED 406 (417)
Q Consensus 397 ~~~ll~~~~~ 406 (417)
|.-+-..+++
T Consensus 1317 ftELaiLyaK 1326 (1630)
T 1xi4_A 1317 FTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=1e-09 Score=90.91 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860 210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289 (417)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 289 (417)
+...|..+-..+...|+ +++|++.|++..+.. +-+..++..+...|.+.|++++|...+...... .+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGD--------FDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCC
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cchh
Confidence 67889999999999999 999999999998865 446788999999999999999999999998763 2346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE 369 (417)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 369 (417)
...+..+...+...++++.|...+.+..... +-+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHH
Confidence 7778888889999999999999999988764 3368889999999999999999999999998862 4467789999999
Q ss_pred HHHcCCHhHHHHHHHHHHHCC
Q 014860 370 ICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~~~ 390 (417)
|.+.|++++|.+.|++..+.+
T Consensus 151 ~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHhCC
Confidence 999999999999999988764
No 63
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=2.8e-09 Score=98.92 Aligned_cols=272 Identities=11% Similarity=0.016 Sum_probs=193.0
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH----HHHHHH
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDAS----TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE----ALYNTI 179 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~l 179 (417)
...+...|+++.|+..++....... ..+.. ++..+...+...|++++|.+.+++..+......+. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445678999999999999865542 22222 45666677889999999999999887642211222 346678
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCC-CCCC--C-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC--C-
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRN-LECR--P-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE--P- 252 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~-~g~~--p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~--p- 252 (417)
...+...|++++|...+++..+... .+.. | ....+..+...+...|+ +++|...+++..+..-. +
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--------LDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHhhccCcH
Confidence 8889999999999999998765310 0111 2 24566778888999999 99999999988753221 1
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 014860 253 -DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD-----YLIHGLCAQGRTKNARELCDEMKRKGFVP--- 323 (417)
Q Consensus 253 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p--- 323 (417)
...++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.......+
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 235677788889999999999999998765211111111222 23344779999999999999887643221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 324 SSKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
....+..+...+...|+.++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1335677888999999999999999987654 322233 2566677788999999999999988765
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=1.3e-09 Score=89.73 Aligned_cols=164 Identities=15% Similarity=0.068 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
..+..+...+...|++++|...|+++.+. .+.+...+..+...+...|+ +++|.+.++++.+.. +.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~ 75 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADA-PDN 75 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCC
Confidence 34555556666666666666666666543 12345556666666666666 666666666665542 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
..++..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 152 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAF 152 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHH
Confidence 455555555555666666666666555442 12334445555555555555555555555554432 123444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 014860 334 ALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 334 ~~~~~g~~~~A~~~~~~m~~ 353 (417)
.|...|++++|.+.+++..+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 65
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=7.2e-09 Score=99.23 Aligned_cols=271 Identities=10% Similarity=-0.067 Sum_probs=172.6
Q ss_pred CHHHHHHHHhccCChhHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCC------CC
Q 014860 103 NNEELCNVMTLQEDPLVCLELFNWASKQ-------PRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATP------SF 169 (417)
Q Consensus 103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~ 169 (417)
.|+.+..++...|+.++|++.|+...+. ..-+....+|+.+..++...|++++|...+++..+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 4788888889999999999999887431 1123457789999999999999999999988876531 11
Q ss_pred CCCHHHHHHHHHHHHHhC--CHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHH---HHhcCCccchhhhhHHHHHHHHH
Q 014860 170 CGTEALYNTIIYFFAEAR--KLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTA---FLSRGKNTYINHVYMETIRCLFK 243 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~---~~~~g~~~~~~~~~~~~a~~~~~ 243 (417)
.....++..+..++.+.| ++++|+..|++..+. .| +...+..+... +...++ .++|++.++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~--------~~~al~~~~ 199 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPP--------SQNAIDPLR 199 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCC--------CCCTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchH--------HHHHHHHHH
Confidence 134567776666666654 699999999999875 34 44555554444 344555 566777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 244 QMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 244 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
+..+.. +.+..++..+...+.. .|++++|.+.+++.... .+.+...+..+...|...|++++|...+++..+.
T Consensus 200 ~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 200 QAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 766543 3345555555444443 35667788888776552 2345667777888888888888888888877764
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860 320 GFVPSSKSYNSLVSALALN-------------------GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM 380 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 380 (417)
.. -+..++..+..+|... +..++|...+++..+.. +.+..++..+...|...|++++|.
T Consensus 277 ~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 277 IP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 32 1445555554444321 12345555555555431 222334555666666667777777
Q ss_pred HHHHHHHHCCC
Q 014860 381 KLLKELQNKNL 391 (417)
Q Consensus 381 ~~~~~m~~~~~ 391 (417)
+.|++..+...
T Consensus 355 ~~~~kaL~~~~ 365 (472)
T 4g1t_A 355 YYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhcCC
Confidence 76666666544
No 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.25 E-value=1.1e-08 Score=106.03 Aligned_cols=235 Identities=11% Similarity=0.070 Sum_probs=178.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFA 184 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 184 (417)
+.++....+. +.....++.+... . .+ ...+...+...|.+++|..+|++.. ......+.++.
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd-~----~d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie--- 1087 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLD-N----YD---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE--- 1087 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhh-h----cc---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---
Confidence 3444444444 5666667666552 1 12 3447778889999999999999862 12233344433
Q ss_pred HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY 264 (417)
Q Consensus 185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 264 (417)
..+++++|.++.++.. +..+|..+-.++...|+ +++|.+.|.+. -|...|..++.++
T Consensus 1088 ~i~nldrAiE~Aervn---------~p~vWsqLAKAql~~G~--------~kEAIdsYiKA------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGM--------VKEAIDSYIKA------DDPSSYMEVVQAA 1144 (1630)
T ss_pred HHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCC--------HHHHHHHHHhc------CChHHHHHHHHHH
Confidence 7899999999999663 46889999999999999 99999999653 4777889999999
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET 344 (417)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 344 (417)
.+.|++++|.+.|....+ .. ++....+.++.+|++.+++++...+. + .++...|..+-..|...|++++|
T Consensus 1145 ~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred HHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999998776 22 44333445999999999998655543 2 34667788899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860 345 VKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL 404 (417)
Q Consensus 345 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 404 (417)
..+|... ..|..+...|++.|++++|.+.+++-. +..+|.-+-.+|
T Consensus 1215 ~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1215 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHH
Confidence 9999985 379999999999999999999988662 345655554444
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.7e-09 Score=88.93 Aligned_cols=164 Identities=8% Similarity=0.005 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860 138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217 (417)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l 217 (417)
..+..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|...++++.+. .+.+...|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~ 82 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA--FDVDVALHLGIAYVKTGAVDRGTELLERSLAD----APDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHH
Confidence 4455566666777777777777777766543 45667777777777777777777777777664 13456667777
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI 297 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 297 (417)
...+...|+ +++|.+.++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus 83 a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 151 (186)
T 3as5_A 83 GLTYVQVQK--------YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHhcC--------HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHH
Confidence 777777777 777777777776653 3456667777777777777777777777776521 34566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 014860 298 HGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 298 ~~~~~~g~~~~A~~l~~~m~~ 318 (417)
..+...|++++|.+.+++..+
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777888888777777654
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=1.3e-10 Score=108.79 Aligned_cols=282 Identities=13% Similarity=-0.005 Sum_probs=202.6
Q ss_pred hhHHHHHHhcCCCC-----CCHHHHHHHHhccCChhHHHHHHHHhhcC---CCC-CCCHHHHHHHHHHHHccCChhHHHH
Q 014860 88 DTQFRCAVSELPPR-----FNNEELCNVMTLQEDPLVCLELFNWASKQ---PRF-RHDASTYHIMTRKLGAAKMYQEMDD 158 (417)
Q Consensus 88 ~~~~~~~l~~~p~~-----~~~~~ll~~l~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~~~~~~a~~ 158 (417)
...+.+.+...|.. ..+..+...+...|+++.|+..|+.+... .+- +....++..+...+...|++++|..
T Consensus 29 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 108 (406)
T 3sf4_A 29 VSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 108 (406)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456666655543 24556777788999999999999886432 111 2235677888889999999999999
Q ss_pred HHHHHHcCCCCCCC----HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHhHhCC-CCCC-CCCHH
Q 014860 159 VVNQMLATPSFCGT----EALYNTIIYFFAEARK--------------------LSRAVYVFKYMKNSR-NLEC-RPSIR 212 (417)
Q Consensus 159 ~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~~-~~g~-~p~~~ 212 (417)
.++...+......+ ..++..+...|...|+ +++|...+++..+.. ..+. .....
T Consensus 109 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 188 (406)
T 3sf4_A 109 CCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 99888764321122 4588899999999999 999999988765420 0011 11245
Q ss_pred HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860 213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI-EPD----IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL 287 (417)
Q Consensus 213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 287 (417)
++..+...+...|+ +++|.+.+++..+... .++ ..++..+...|...|++++|...+++......-.
T Consensus 189 ~~~~la~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 189 AFGNLGNTHYLLGN--------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHHTB--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccC--------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 78889999999999 9999999998774210 112 3478888899999999999999999875421111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 014860 288 PN----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK---- 354 (417)
Q Consensus 288 ~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 354 (417)
.+ ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+.
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 567888999999999999999999987653 1111 1567888999999999999999999987664
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHh
Q 014860 355 QRPV-DFITYRTVLDEICRRGRAG 377 (417)
Q Consensus 355 g~~p-~~~~~~~li~~~~~~g~~~ 377 (417)
+..+ ...++..+...+...|+..
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 341 GDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCcchhHHHHHHHHHHHHhhHhH
Confidence 2112 2346667777787777653
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=6e-10 Score=104.67 Aligned_cols=260 Identities=10% Similarity=0.007 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCC-CCCCH
Q 014860 138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE----ALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLE-CRPSI 211 (417)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g-~~p~~ 211 (417)
..+..+...+...|++++|...++.+.+... .+. ..+..+...|...|++++|...|++..+.. ..+ .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3344556678899999999999999998754 333 578899999999999999999999876530 001 12245
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----G-IEPDIFSLNSMIKGYILSNH----------------- 269 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~----------------- 269 (417)
.++..+...|...|+ +++|.+.+++..+. + ......++..+...|...|+
T Consensus 127 ~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGR--------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 678889999999999 99999999887653 1 12234577888899999999
Q ss_pred HHHHHHHHHHhhhh---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 014860 270 VNDALRIFHQMGVV---YNY-LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-VPS----SKSYNSLVSALALNGE 340 (417)
Q Consensus 270 ~~~a~~~~~~m~~~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~ 340 (417)
+++|.+.+++..+. .+- ......+..+...|...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 99999988876431 111 12345788888999999999999999998875311 112 2378889999999999
Q ss_pred HHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CC----hhhHHHHHHHHHhh
Q 014860 341 VEETVKNLWEMIEKQ--RP---VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL--ID----GYTYTKLLDVLEDD 407 (417)
Q Consensus 341 ~~~A~~~~~~m~~~g--~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~----~~t~~~ll~~~~~~ 407 (417)
+++|...+++..+.. .. ....++..+...|...|++++|.+.+++...... .+ ..++..+-..+...
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 999999999887651 11 1145778888899999999999999998876421 12 33555555555544
No 70
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.4e-09 Score=104.23 Aligned_cols=265 Identities=8% Similarity=-0.061 Sum_probs=170.6
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH---HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh----
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRK---LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA---- 186 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---- 186 (417)
.+++++|++.|+.+.+.. +-++..+..+..+ +...++.++|.+.++...+..+ .+..++..+...+...
T Consensus 151 ~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~ 226 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEG 226 (472)
T ss_dssp TTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS--SCHHHHHHHHHHHHHCC---
T ss_pred cccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC--cchHHHHHHHHHHHHHHhhh
Confidence 457899999999987644 3455555554444 4567888889999988887654 5666676666555544
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL 266 (417)
Q Consensus 187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 266 (417)
|++++|.+.+++.... .+.+..++..+...|...|+ +++|.+.|++..+.. +-+..++..+-..|..
T Consensus 227 ~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDE--------PDKAIELLKKALEYI-PNNAYLHCQIGCCYRA 293 (472)
T ss_dssp ---CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCc--------hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 6788999999988875 24567889999999999999 999999999988764 3345566666555532
Q ss_pred c-------------------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 014860 267 S-------------------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK- 326 (417)
Q Consensus 267 ~-------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~- 326 (417)
. +..+.|...++...+.. +.+...+..+...|...|++++|++.|++..+....+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 2 23566777777765522 2344567788889999999999999999988764433221
Q ss_pred -HHHHHHH-HHHhcCCHHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHHcCCHhHHHH
Q 014860 327 -SYNSLVS-ALALNGEVEETVKNLWEMIEKQ-----------------------RPVDFITYRTVLDEICRRGRAGEAMK 381 (417)
Q Consensus 327 -~~~~li~-~~~~~g~~~~A~~~~~~m~~~g-----------------------~~p~~~~~~~li~~~~~~g~~~~A~~ 381 (417)
.+..+.. .+...|+.++|+..|.+..+.. -+.+..+|..+...|...|+.++|.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222 2346789999999888776531 13345678888888889999999999
Q ss_pred HHHHHHHCCC--CChhhH
Q 014860 382 LLKELQNKNL--IDGYTY 397 (417)
Q Consensus 382 ~~~~m~~~~~--p~~~t~ 397 (417)
.|++..+.+. |+..+|
T Consensus 452 ~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 452 DSERGLESGSLIPSASSW 469 (472)
T ss_dssp ------------------
T ss_pred HHHHHHhcCCCCCcHhhc
Confidence 9998887664 554443
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=4.8e-10 Score=101.63 Aligned_cols=258 Identities=13% Similarity=0.021 Sum_probs=188.1
Q ss_pred hHHHHHHhcCCCC-----CCHHHHHHHHhccCChhHHHHHHHHhhcC---CC-CCCCHHHHHHHHHHHHccCChhHHHHH
Q 014860 89 TQFRCAVSELPPR-----FNNEELCNVMTLQEDPLVCLELFNWASKQ---PR-FRHDASTYHIMTRKLGAAKMYQEMDDV 159 (417)
Q Consensus 89 ~~~~~~l~~~p~~-----~~~~~ll~~l~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 159 (417)
..+.+.+...|.. ..+..+...+...|+++.|++.++.+... .+ .+....++..+...+...|++++|.+.
T Consensus 26 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 105 (338)
T 3ro2_A 26 SFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 105 (338)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4455666555543 24556777788999999999999887532 11 122356778888899999999999999
Q ss_pred HHHHHcCCCCCCC----HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHhHhCC-CCC-CCCCHHH
Q 014860 160 VNQMLATPSFCGT----EALYNTIIYFFAEARK--------------------LSRAVYVFKYMKNSR-NLE-CRPSIRS 213 (417)
Q Consensus 160 ~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~~-~~g-~~p~~~~ 213 (417)
+.+..+.....++ ..++..+...|...|+ +++|.+.+++..+.. ..+ ......+
T Consensus 106 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 185 (338)
T 3ro2_A 106 CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9887764221122 4488889999999999 999999998765420 001 1112457
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP 288 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 288 (417)
+..+...+...|+ +++|.+.+++..+. +. .....++..+...+...|++++|.+.+++......-..
T Consensus 186 ~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 186 FGNLGNTHYLLGN--------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp HHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 8888999999999 99999999887642 11 11134778888999999999999999998754211112
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 289 N----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFV-PSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 289 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+ ..++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2 567788889999999999999999987653 111 11457788999999999999999999998875
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=2.4e-09 Score=99.81 Aligned_cols=235 Identities=9% Similarity=-0.042 Sum_probs=149.6
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-----CHHHHHH
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRH----DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-----TEALYNT 178 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~ 178 (417)
...+...|+++.|++.|+.+.+...-.+ ...++..+...+...|++++|.+.+.+..+.....+ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3345678899999999988865321112 346677788888889999999888888776422112 2457788
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCC-CCC-CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CC-C
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRN-LEC-RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GI-E 251 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~-~g~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~-~ 251 (417)
+...|...|++++|...|++..+... .+- .....++..+...|...|+ +++|.+.|++..+. +. +
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--------YEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhhccch
Confidence 88888899999999888887764300 000 0112467788888888888 88888888877651 22 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-
Q 014860 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---NYLPNSFSYDYLIHGLCAQGR---TKNARELCDEMKRKGFVPS- 324 (417)
Q Consensus 252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~- 324 (417)
....++..+...|.+.|++++|.+.+++..+.. +-......+..+-..|...|+ +++|..++++. +..|+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 335667777788888888888888887764411 111112234555556666666 55555555543 22222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 325 SKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
...+..+...|...|++++|.+.+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23455566666666666666666666554
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=9.2e-10 Score=97.27 Aligned_cols=210 Identities=13% Similarity=0.059 Sum_probs=143.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
....++..+...|...|++++|+..|++..+.. +...+....+|..+...+...|+ +++|.+.|++..
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al 112 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHH
Confidence 346778888999999999999999998887530 00112346679999999999999 999999999887
Q ss_pred HC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 247 ND------G-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV----Y-N-YLPNSFSYDYLIHGLCAQGRTKNARELC 313 (417)
Q Consensus 247 ~~------g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~-~~~~~~~~~~li~~~~~~g~~~~A~~l~ 313 (417)
+. . -+....++..+...|...|++++|.+.+++..+. . + ......++..+...|...|++++|...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 54 1 1234567888999999999999999999988662 0 1 2224567888999999999999999999
Q ss_pred HHHHHC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 014860 314 DEMKRK-------GFVPS-SKSYNSLVSALALNGE------VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA 379 (417)
Q Consensus 314 ~~m~~~-------g~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 379 (417)
++..+. ...+. ...|..+...+...+. +..+...+..... ..+....++..+...|...|++++|
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 271 (283)
T 3edt_B 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAA 271 (283)
T ss_dssp HHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 988753 11222 2233333333333222 2222222221111 1112345778889999999999999
Q ss_pred HHHHHHHHHC
Q 014860 380 MKLLKELQNK 389 (417)
Q Consensus 380 ~~~~~~m~~~ 389 (417)
..++++..+.
T Consensus 272 ~~~~~~al~~ 281 (283)
T 3edt_B 272 HTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=1.1e-09 Score=96.87 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=120.2
Q ss_pred hCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC------CC-CCCH
Q 014860 186 ARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND------GI-EPDI 254 (417)
Q Consensus 186 ~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~ 254 (417)
.|++++|+..|++..+.- ....+....++..+...+...|+ +++|+..+++..+. +- +...
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKEAAHLLNDALAIREKTLGKDHPAVA 85 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 455555555555444310 00112346779999999999999 99999999988754 22 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVY-----N-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK------GFV 322 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 322 (417)
.++..+...|...|++++|.+.+++..... . .+.....+..+...|...|++++|...+++..+. +..
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 688889999999999999999999886521 1 1234677888999999999999999999998764 112
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 323 P-SSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 323 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
| ...++..+...|...|++++|..++++..+.
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 3567888999999999999999999998863
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=2.9e-09 Score=99.24 Aligned_cols=235 Identities=11% Similarity=-0.017 Sum_probs=176.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHcCCCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC-CC--CCCCHHHHH
Q 014860 143 MTRKLGAAKMYQEMDDVVNQMLATPSFCG----TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN-LE--CRPSIRSYN 215 (417)
Q Consensus 143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~g--~~p~~~~~~ 215 (417)
....+...|++++|.+.++...+.-...+ ...++..+...|...|++++|...+++..+.-. .+ ......+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44567789999999999999988522112 356888999999999999999999998775310 00 011246788
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC-
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNY- 286 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~- 286 (417)
.+...|...|+ +++|.+.|++..+. +-.+ ...++..+-..|...|++++|.+.+++..+. .+.
T Consensus 189 ~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 189 LFATNFLDLKQ--------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhcC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999 99999999887743 2111 1247888999999999999999999887551 133
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC
Q 014860 287 LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEKQRPVD 359 (417)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~ 359 (417)
+....++..+...|.+.|++++|...+++..+. +-......+..+-..|...|+ +++|+.++++. +..|+
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~ 337 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYAD 337 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHH
Confidence 334677889999999999999999999987653 111123345677888888898 77777777765 22333
Q ss_pred -HHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 360 -FITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 360 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
...+..+...|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677888899999999999999998765
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.9e-08 Score=93.52 Aligned_cols=231 Identities=9% Similarity=-0.045 Sum_probs=143.6
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-----CHHHHHHHHH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHD----ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-----TEALYNTIIY 181 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~ 181 (417)
+...|+++.|+..|+.+.+...-.++ ..++..+...+...|++++|...+.+..+.....+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 45778888899888887643222232 45677777788888888888888877765321111 2456778888
Q ss_pred HHHHhCCHHHHHHHHHHhHhCC-CCCCC-CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCCCCCH
Q 014860 182 FFAEARKLSRAVYVFKYMKNSR-NLECR-PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGIEPDI 254 (417)
Q Consensus 182 ~~~~~g~~~~a~~~~~~m~~~~-~~g~~-p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~ 254 (417)
.|...|++++|...|++..+.. ..+.. ....+++.+...|...|+ +++|.+.|++..+ .. +...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~~~~-~~~~ 261 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--------DQMAVEHFQKAAKVSREKVP-DLLP 261 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhhCC-hhHH
Confidence 8888888888888888766520 00111 123467777788888888 8888888877765 32 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYN---YLPNSFSYDYLIHGLCAQGR---TKNARELCDEMKRKGFVPS-SKS 327 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~~ 327 (417)
.++..+...|.+.|++++|...+++..+... -......+..+-..|...++ +++|...+++ .+..|+ ...
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence 5666777777777888777777777654221 11223344455555555566 5555555554 222222 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+..+...|...|+.++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666666777776666666544
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=5.9e-09 Score=104.64 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY 214 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~ 214 (417)
-+..+|+.+..++.+.|++++|.+.|++..+... .+...|+.+..+|.+.|++++|++.|++..+.. +-+...|
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----P~~~~a~ 80 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHH
Confidence 3567788888888888888888888888877654 467788888888888888888888888887651 2347778
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD 294 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 294 (417)
+.+-..+...|+ +++|++.|++..+.. +-+...|+.+-.+|.+.|++++|.+.|++..+.. +-+...|.
T Consensus 81 ~nLg~~l~~~g~--------~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~ 149 (723)
T 4gyw_A 81 SNMGNTLKEMQD--------VQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYC 149 (723)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHH
T ss_pred HHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHh
Confidence 888888888888 888888888877654 3356778888888888888888888888776521 23567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
.+...|...|++++|.+.+++..+
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888777776553
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=1.1e-08 Score=102.61 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860 210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289 (417)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 289 (417)
+..+|+.+-..+.+.|+ +++|++.|++..+.. +-+..+|..+-.+|.+.|++++|.+.|++..+.. +-+
T Consensus 8 ~a~al~nLG~~~~~~G~--------~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~ 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGN--------IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTF 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred cHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 47789999999999999 999999999998864 3357899999999999999999999999987631 245
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE 369 (417)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 369 (417)
...|..+-.+|...|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+...
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhH
Confidence 789999999999999999999999999875322 67899999999999999999999999999862 2356789999999
Q ss_pred HHHcCCHhHHHHHHHHHHH
Q 014860 370 ICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~ 388 (417)
|...|++++|.+.+++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999998887754
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=5e-08 Score=90.69 Aligned_cols=234 Identities=11% Similarity=-0.002 Sum_probs=174.2
Q ss_pred HHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--CCCCC-CHHHHHH
Q 014860 144 TRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--LECRP-SIRSYNI 216 (417)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~g~~p-~~~~~~~ 216 (417)
...+...|++++|...++...+.....++ ..++..+...|...|+++.|...+++..+.-. .+..+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34567899999999999999876322133 56788899999999999999999988765310 01111 2567888
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCC
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNYLP 288 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~ 288 (417)
+...|...|+ +++|.+.|++..+. +-.+ ...++..+-..|...|++++|.+.+++.... .+.+.
T Consensus 188 lg~~y~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 188 IAGNYDDFKH--------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 9999999999 99999999887652 2111 2357788889999999999999999887541 12233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKG----FVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEKQRPVDF- 360 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~- 360 (417)
...++..+...|.+.|++++|...+++..+.. -......+..+-..|...|+ +++|+.++++ .+..++.
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~ 336 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence 46778889999999999999999999987642 22224456667677777888 7778777776 3222333
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 361 ITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
..+..+...|...|++++|.+.|++..+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567788899999999999999998765
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=9e-08 Score=82.01 Aligned_cols=175 Identities=8% Similarity=-0.111 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860 209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP 288 (417)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 288 (417)
.|...|......+...|+ +++|.+.|++..+....++...+..+..++...|++++|.+.++...+. -+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~ 74 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKN--------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN 74 (228)
T ss_dssp CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS
T ss_pred cCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc
Confidence 466888899999999999 9999999999998764377888888999999999999999999998762 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS-------KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD-- 359 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 359 (417)
+...|..+...|...|++++|...+++..+.... +. ..|..+-..+...|++++|.+.|++..+. .|+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~ 151 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKW 151 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcc
Confidence 5678899999999999999999999999875322 44 45788888899999999999999999875 465
Q ss_pred -HHHHHHHHHHHHHcCCH---------------------------hHHHHHHHHHHHCCCCChhh
Q 014860 360 -FITYRTVLDEICRRGRA---------------------------GEAMKLLKELQNKNLIDGYT 396 (417)
Q Consensus 360 -~~~~~~li~~~~~~g~~---------------------------~~A~~~~~~m~~~~~p~~~t 396 (417)
...|..+...|...|+. ++|...+++..+...-+...
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 46777888888888877 88999999888865334433
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.01 E-value=1.1e-07 Score=81.42 Aligned_cols=195 Identities=9% Similarity=-0.005 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY 214 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~ 214 (417)
.|+..+......+...|++++|.+.|+...+.... ++...+..+..+|.+.|++++|++.|++..+.. +.+...|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN----YNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC----cchHHHH
Confidence 46788888888999999999999999999987753 566777778999999999999999999998751 3356778
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-------FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL 287 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 287 (417)
..+...+...|+ +++|++.|++..+.. +.+. ..|..+-..+...|++++|.+.|+...+. .
T Consensus 80 ~~l~~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~ 147 (228)
T 4i17_A 80 IGKSAAYRDMKN--------NQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---T 147 (228)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---S
T ss_pred HHHHHHHHHccc--------HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---C
Confidence 899999999999 999999999988764 2234 45677777888899999999999998762 3
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 288 PN---SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 288 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
|+ ...|..+...|... +..+++++...+. .+...|..... ...+.+++|...+++..+.
T Consensus 148 p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNN-----GADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH-----HHHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 54 45666666666543 4445566555432 24555554443 3456689999999998876
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=2.1e-07 Score=82.62 Aligned_cols=243 Identities=14% Similarity=0.113 Sum_probs=170.4
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS 190 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 190 (417)
.--.|++..|+.-...+. . ......-..+.+++...|+++.. .. ..|....+..+...+ ..+
T Consensus 23 ~fy~G~yq~~i~e~~~~~---~-~~~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFS---K-VTDNTLLFYKAKTLLALGQYQSQ---------DP-TSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHTTTCHHHHTHHHHTSS---C-CCCHHHHHHHHHHHHHTTCCCCC---------CS-SSTTHHHHHHHHHHH-TTT---
T ss_pred HHHhhHHHHHHHHHHhcC---c-cchHHHHHHHHHHHHHcCCCccC---------CC-CCHHHHHHHHHHHHh-ccc---
Confidence 345788888888443332 1 12234444556788888887642 11 115544555554444 222
Q ss_pred HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC
Q 014860 191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI-EPDIFSLNSMIKGYILSNH 269 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~ 269 (417)
|+..|++..+. + .++..++..+..++...|+ .++|++++.+....|- .-+...+..++..+.+.|+
T Consensus 85 -a~~~l~~l~~~---~-~~~~~~~~~la~i~~~~g~--------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 85 -NIEELENLLKD---K-QNSPYELYLLATAQAILGD--------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp -CCHHHHHTTTT---S-CCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhc---C-CCCcHHHHHHHHHHHHcCC--------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC
Confidence 78888888764 2 4566666788899999999 9999999999876653 2356778888999999999
Q ss_pred HHHHHHHHHHhhhhCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 270 VNDALRIFHQMGVVYNYLP-----NSFSYDYLIHGLCA--QG--RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 340 (417)
.+.|.+.++.|.+. .| +..+...|..++.. .| ++++|..+|+++.+. .|+..+-..++.++.+.|+
T Consensus 152 ~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 152 VSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp HHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence 99999999999773 35 35666777766433 34 899999999998765 3554455555668999999
Q ss_pred HHHHHHHHHHHHHc-----C----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 341 VEETVKNLWEMIEK-----Q----RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 341 ~~~A~~~~~~m~~~-----g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
+++|.+.++.+.+. . -+-|..+...+|......|+ +|.+++.++.+...
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 99999999876653 0 13355677567766666776 88999999999874
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.98 E-value=2.5e-07 Score=85.62 Aligned_cols=239 Identities=13% Similarity=0.020 Sum_probs=169.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCCCC-CCHHHHH
Q 014860 142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE----ALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLECR-PSIRSYN 215 (417)
Q Consensus 142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~-p~~~~~~ 215 (417)
.....+...|++++|...+++....... .+. ..++.+...+...|++++|...+++..... ..|.. ....++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444566899999999999998876532 333 256677788899999999999999876531 00100 0123466
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---C
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIE--P-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---N 285 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~ 285 (417)
.+...+...|+ +++|.+.+++..+. +.. | ....+..+-..+...|++++|...+++..... +
T Consensus 98 ~la~~~~~~G~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 98 QQSEILFAQGF--------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHCCC--------HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 77888999999 99999999887642 322 2 23456677888999999999999999875521 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 014860 286 YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP--SSKSYN----SLVSALALNGEVEETVKNLWEMIEKQRPV- 358 (417)
Q Consensus 286 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 358 (417)
......++..+...+...|++++|...+++.....-.+ ...... ..+..+...|+.++|...+++.......+
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 11134678888889999999999999999887531111 121111 23345779999999999998877643211
Q ss_pred --CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 359 --DFITYRTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 359 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
....+..+...+...|++++|...+++....
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1335667788899999999999999987653
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=5.8e-08 Score=74.92 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF 255 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 255 (417)
|..+...+...|++++|..+|+++.+. .+.+...|..+...+...|+ +++|.++++++.+.+ +.+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~ 70 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PRSAE 70 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHC-CCchH
Confidence 444445555555555555555555443 12234444455555555555 555555555544432 22333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
.+..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|...++++.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444444444444444331 11223344444444444444444444444443
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=4.8e-08 Score=75.40 Aligned_cols=129 Identities=8% Similarity=0.089 Sum_probs=93.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF 218 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li 218 (417)
.|..+...+...|++++|.++++.+.+... .+...+..+...+...|++++|...|+++... .+.+...|..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----CCCchHHHHHHH
Confidence 455666677777788888888777776543 45667777777788888888888888877764 134566777777
Q ss_pred HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
..+...|+ +++|.++++++.+.. +.+..++..+...+.+.|++++|.+.++.+..
T Consensus 77 ~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 77 NAYYKQGD--------YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHTTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC--------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77888888 888888888777654 33566777777778888888888888877654
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.94 E-value=1.9e-07 Score=89.01 Aligned_cols=266 Identities=10% Similarity=0.036 Sum_probs=155.0
Q ss_pred hhHHHHHHhcCCCCCCHHHHHHHHhccC-----ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhH---HHHH
Q 014860 88 DTQFRCAVSELPPRFNNEELCNVMTLQE-----DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQE---MDDV 159 (417)
Q Consensus 88 ~~~~~~~l~~~p~~~~~~~ll~~l~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~ 159 (417)
...+.+.... ++..+..+...+...+ ++++|+..|+...+.. +...+..+...|...+..++ +.+.
T Consensus 58 ~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 58 EATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp ---------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 3334555544 4556666666454444 7889999999886533 22255556666655544333 3444
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH----HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC---Cccchhh
Q 014860 160 VNQMLATPSFCGTEALYNTIIYFFAEARKLS----RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG---KNTYINH 232 (417)
Q Consensus 160 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~~~~ 232 (417)
+......+ +...+..+...|...+.++ .+..+++..... .|+ .+..+-..|...| +
T Consensus 132 ~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~-----~~~--a~~~Lg~~~~~~g~~~~------ 194 (452)
T 3e4b_A 132 ISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT-----TDI--CYVELATVYQKKQQPEQ------ 194 (452)
T ss_dssp HHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT-----CTT--HHHHHHHHHHHTTCHHH------
T ss_pred HHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC-----CHH--HHHHHHHHHHHcCCccc------
Confidence 44444332 3345666667777776443 344444444332 233 6667777777777 5
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH-H--HhcCC
Q 014860 233 VYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS----NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG-L--CAQGR 305 (417)
Q Consensus 233 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~--~~~g~ 305 (417)
.++|++.|++..+.| .++...+..+-..|... ++.++|.+.|+... +-+...+..|-.. | ...++
T Consensus 195 --~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 195 --QAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp --HHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCC
T ss_pred --HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCC
Confidence 777888888777776 45555555555555444 57778888777765 1344445555444 3 35677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCH
Q 014860 306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNG-----EVEETVKNLWEMIEKQRPVDFITYRTVLDEICR----RGRA 376 (417)
Q Consensus 306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 376 (417)
+++|.++|++..+.| +...+..|-..|. .| +.++|.++|++.. .| +...+..|-..|.. ..+.
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCH
Confidence 888888888777766 5666666666666 44 7778887777766 33 55566666655554 3377
Q ss_pred hHHHHHHHHHHHCCCC
Q 014860 377 GEAMKLLKELQNKNLI 392 (417)
Q Consensus 377 ~~A~~~~~~m~~~~~p 392 (417)
++|...|++..+.|.+
T Consensus 339 ~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 339 QKALDHLLTAARNGQN 354 (452)
T ss_dssp HHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHhhChH
Confidence 7777777777776643
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=1.1e-07 Score=84.96 Aligned_cols=212 Identities=10% Similarity=0.042 Sum_probs=152.1
Q ss_pred ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCCCCCC-HHHHHHHHHHHHhcCCccc
Q 014860 152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLECRPS-IRSYNILFTAFLSRGKNTY 229 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~p~-~~~~~~li~~~~~~g~~~~ 229 (417)
++++|.+.+... ...|...|++++|...|++..+.. ..|-+++ ..+|+.+...|...|+
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--- 92 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--- 92 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC---
Confidence 477777777665 456788999999999998776530 0011222 5689999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHH
Q 014860 230 INHVYMETIRCLFKQMVNDGI---EPD--IFSLNSMIKGYILS-NHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHG 299 (417)
Q Consensus 230 ~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~ 299 (417)
+++|+..|++..+... .+. ..+++.+-..|... |++++|...|++..+...-..+ ..++..+...
T Consensus 93 -----~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 93 -----SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 9999999988764211 111 45788888999996 9999999999987652110111 4578889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHH
Q 014860 300 LCAQGRTKNARELCDEMKRKGFVPSS------KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF------ITYRTVL 367 (417)
Q Consensus 300 ~~~~g~~~~A~~l~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li 367 (417)
+.+.|++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHH
Confidence 99999999999999999886433221 25777888999999999999999998764 3332 1344556
Q ss_pred HHHH--HcCCHhHHHHHHHHHHHC
Q 014860 368 DEIC--RRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 368 ~~~~--~~g~~~~A~~~~~~m~~~ 389 (417)
.+|. ..+++++|+..|+.+...
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHcCCHHHHHHHHHHhccCCcc
Confidence 6664 456788888888766553
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=1.3e-07 Score=83.96 Aligned_cols=181 Identities=11% Similarity=0.069 Sum_probs=139.0
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 014860 120 CLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYM 199 (417)
Q Consensus 120 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 199 (417)
|+..|+...... .++..++..+..++...|++++|++++...+..+....+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888775443 566777778889999999999999999999776642257788999999999999999999999999
Q ss_pred HhCCCCCCCC-----CHHHHHHHHHHHHh--cC--CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 200 KNSRNLECRP-----SIRSYNILFTAFLS--RG--KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHV 270 (417)
Q Consensus 200 ~~~~~~g~~p-----~~~~~~~li~~~~~--~g--~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 270 (417)
.+. .| +..+...+..+++. .| + ..+|..+|+++.+. .|+..+-..++.++.+.|++
T Consensus 163 ~~~-----~~d~~~~~d~~l~~Laea~v~l~~g~~~--------~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 163 TNA-----IEDTVSGDNEMILNLAESYIKFATNKET--------ATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHH-----SCHHHHHHHHHHHHHHHHHHHHHHTCST--------TTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred Hhc-----CccccccchHHHHHHHHHHHHHHhCCcc--------HHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence 876 56 35666667766433 34 5 89999999999765 35544445556689999999
Q ss_pred HHHHHHHHHhhhhC----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 271 NDALRIFHQMGVVY----N----YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 271 ~~a~~~~~~m~~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
++|++.++.+.+.. . -+-|..+.-.+|......|+ +|.+++.++.+.
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 99999999765421 0 13466677566666666777 889999999986
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=1.6e-07 Score=83.96 Aligned_cols=203 Identities=8% Similarity=0.023 Sum_probs=142.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcC---CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQ---PRFRH-DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EAL 175 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~ 175 (417)
|+.....+...|++++|++.|...... .+-++ ...+|+.+..++...|++++|...++...+......+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344566778899999999999887542 12111 2578899999999999999999999988764321122 457
Q ss_pred HHHHHHHHHHh-CCHHHHHHHHHHhHhCCC-CCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860 176 YNTIIYFFAEA-RKLSRAVYVFKYMKNSRN-LECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP 252 (417)
Q Consensus 176 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~~-~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p 252 (417)
++.+...|... |++++|+..|++..+... .+... ...+|+.+...+...|+ +++|+..|++..+.....
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--------YIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHhcC
Confidence 88999999996 999999999998876410 00000 14578899999999999 999999999999865332
Q ss_pred CH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 014860 253 DI------FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS------FSYDYLIHGLC--AQGRTKNARELCDEMK 317 (417)
Q Consensus 253 ~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~l~~~m~ 317 (417)
.. ..|..+..++...|++++|...|++..+ +.|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 22 1567777888899999999999998865 22321 12344455554 3455666776665543
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=2.5e-07 Score=81.02 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-C---HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-S---IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~---~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
.+...+-.+...+.+.|++++|+..|+++.+. .| + ...+..+..++...|+ +++|...|++..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~~l 79 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKE--------YLLAASEYERFI 79 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCc--------HHHHHHHHHHHH
Confidence 56677788888899999999999999999885 23 3 6788889999999999 999999999998
Q ss_pred HCCC-C-CCHHHHHHHHHHHHh--------cCCHHHHHHHHHHhhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 247 NDGI-E-PDIFSLNSMIKGYIL--------SNHVNDALRIFHQMGVVYNYLPNS-FSYDYLIHGLCAQGRTKNARELCDE 315 (417)
Q Consensus 247 ~~g~-~-p~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 315 (417)
+... . .....+..+..++.. .|++++|...|++..+.. |+. .....+ ..+..
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~--------------~~~~~ 142 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDAT--------------QKIRE 142 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHH--------------HHHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHH--------------HHHHH
Confidence 7531 1 224566677777878 899999999999987643 321 122111 11111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHc----------CCHhHHHHHH
Q 014860 316 MKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP-V-DFITYRTVLDEICRR----------GRAGEAMKLL 383 (417)
Q Consensus 316 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~----------g~~~~A~~~~ 383 (417)
+... -...+..+...|.+.|++++|...|+++.+..-. + ....+..+..+|... |++++|...|
T Consensus 143 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 143 LRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 1100 0112445556666777777777777776654110 1 233555555666544 6667777777
Q ss_pred HHHHHCC
Q 014860 384 KELQNKN 390 (417)
Q Consensus 384 ~~m~~~~ 390 (417)
+++.+..
T Consensus 219 ~~~~~~~ 225 (261)
T 3qky_A 219 ERLLQIF 225 (261)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 7776654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=3.6e-07 Score=80.09 Aligned_cols=213 Identities=5% Similarity=-0.089 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR 212 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~ 212 (417)
+.+...+-.....+.+.|++++|.+.|+.+.+..+..+. ...+..+..+|.+.|++++|+..|+...+... +.+....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchhHH
Confidence 346777777888889999999999999999887642121 67888899999999999999999999988510 1112245
Q ss_pred HHHHHHHHHHh--------cCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 014860 213 SYNILFTAFLS--------RGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVNDALRIFHQMGVV 283 (417)
Q Consensus 213 ~~~~li~~~~~--------~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (417)
.+..+..++.. .|+ +++|...|++..+.. |+. ....++ ..+.....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~- 145 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTD--------TRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRA- 145 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHH--------HHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHH-
T ss_pred HHHHHHHHHHHhcccccccchh--------HHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHH-
Confidence 67778888888 888 999999999998763 332 222221 11111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 014860 284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV-P-SSKSYNSLVSALALN----------GEVEETVKNLWEM 351 (417)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m 351 (417)
.-...+..+...|...|++++|...|+++.+.... + ....+..+..+|... |++++|...|+++
T Consensus 146 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 146 ----KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 00112455666677777888888777777664211 1 234566666677655 7778888888777
Q ss_pred HHcCCCCCH----HHHHHHHHHHHHcCCHhH
Q 014860 352 IEKQRPVDF----ITYRTVLDEICRRGRAGE 378 (417)
Q Consensus 352 ~~~g~~p~~----~~~~~li~~~~~~g~~~~ 378 (417)
.+. .|+. .....+-..+.+.++.++
T Consensus 222 ~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 222 LQI--FPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH--CCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 765 2332 234444444555554443
No 92
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.78 E-value=1.5e-06 Score=82.74 Aligned_cols=260 Identities=8% Similarity=-0.020 Sum_probs=175.6
Q ss_pred CCCCHHHHHHHHhccCChh---HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHH
Q 014860 100 PRFNNEELCNVMTLQEDPL---VCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALY 176 (417)
Q Consensus 100 ~~~~~~~ll~~l~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 176 (417)
+...+..+...|...+... .+++.+...... -+......+...+...+.++++.+....+.+.-.. .+...+
T Consensus 105 ~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~a~ 179 (452)
T 3e4b_A 105 EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDICY 179 (452)
T ss_dssp CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTTHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHHHH
Confidence 3346666777775554433 344444444221 23556666667777777555544442222221111 233378
Q ss_pred HHHHHHHHHhC---CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc----CCccchhhhhHHHHHHHHHHHHHCC
Q 014860 177 NTIIYFFAEAR---KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR----GKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 177 ~~li~~~~~~g---~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~----g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
..|...|.+.| +.++|++.|+...+.+ .++...+..+-..|... ++ .++|++.|++.. .|
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~~~a~~~~~Lg~~y~~g~~~~~d--------~~~A~~~~~~aa-~g 246 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG----TVTAQRVDSVARVLGDATLGTPD--------EKTAQALLEKIA-PG 246 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CSCHHHHHHHHHHHTCGGGSSCC--------HHHHHHHHHHHG-GG
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCCCCC--------HHHHHHHHHHHc-CC
Confidence 88888999999 8999999999998863 45666556666666443 56 899999999887 33
Q ss_pred CCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCC
Q 014860 250 IEPDIFSLNSMIKG-Y--ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG-----RTKNARELCDEMKRKGF 321 (417)
Q Consensus 250 ~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~ 321 (417)
+...+..+-.. | ...+++++|.+.|++..+ .| +...+..|-..|. .| ++++|..+|++.. .|
T Consensus 247 ---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g- 316 (452)
T 3e4b_A 247 ---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR- 316 (452)
T ss_dssp ---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT-
T ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC-
Confidence 45555555555 3 468899999999999887 33 6667777777776 55 8999999999877 43
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCC
Q 014860 322 VPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR----RGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 322 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p 392 (417)
+...+..|-..|.. ..+.++|..+|++..+.|. ......|-..|.. ..+.++|...|+.-.+.|.+
T Consensus 317 --~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 317 --EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp --CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred --CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 67777777777776 3489999999999888763 3344555555553 45788999999888888754
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=6.8e-07 Score=75.50 Aligned_cols=124 Identities=8% Similarity=0.067 Sum_probs=61.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
+..+|.+.|++++|+..|++..+.. +-+...|..+...+...|+ +++|+..|++..+.. +-+..++.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~~ 126 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVCRGQ--------EKDALRMYEKILQLE-ADNLAANI 126 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-CCCHHHHH
Confidence 5566666666666666666666541 2345566666666666666 666666666666543 23445555
Q ss_pred HHHHHHHhcCC--HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 259 SMIKGYILSNH--VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 259 ~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
.+-..|...|+ .+.+...+..... ..|....+...-.++...|++++|...|++..+
T Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 127 FLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555544432 2223333333321 111112222233334445556666666665554
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=4.8e-07 Score=80.62 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...+..+...+.+.|++++|...++...+..+ .+...+..+...|.+.|++++|...|++.... .|+.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~ 188 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTRYQG 188 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchHHHH
Confidence 344444455555555666666666655555443 34455555555566666666666666555443 33332222
Q ss_pred HHH-HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860 216 ILF-TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD 294 (417)
Q Consensus 216 ~li-~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 294 (417)
... ..+...++ .++|.+.+++..+.. +.+...+..+-..+...|++++|.+.|.++.+...-..+...+.
T Consensus 189 ~~~~~~l~~~~~--------~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 189 LVAQIELLXQAA--------DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp HHHHHHHHHHHT--------SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred HHHHHHHHhhcc--------cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 211 12333344 444555555554443 23444555555555555555555555555544211111234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 014860 295 YLIHGLCAQGRTKNARELCDE 315 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~ 315 (417)
.+...+...|+.++|...+++
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHH
Confidence 555555555555555555444
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=1.5e-07 Score=94.63 Aligned_cols=173 Identities=9% Similarity=-0.038 Sum_probs=116.7
Q ss_pred hccCChhHHHHHHHHhh--------cCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 112 TLQEDPLVCLELFNWAS--------KQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 112 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
...+++++|++.|+.+. +.. +.+...+..+..++...|++++|.+.+++..+... .+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHH
Confidence 56677888888887775 222 44566777777777778888888888877777653 4667777777777
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 263 (417)
.+.|++++|++.|++..+.. +-+...|..+...+.+.|+ +++ ++.|++..+.. +-+...|..+-.+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~----P~~~~~~~~lg~~~~~~g~--------~~~-~~~~~~al~~~-P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF----PGELAPKLALAATAELAGN--------TDE-HKFYQTVWSTN-DGVISAAFGLARA 543 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS----TTCSHHHHHHHHHHHHHTC--------CCT-TCHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCC--------hHH-HHHHHHHHHhC-CchHHHHHHHHHH
Confidence 78888888888887777641 2345667777777777777 677 77777776654 3356677777777
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCC
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGR 305 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~ 305 (417)
+.+.|++++|.+.|++..+ ..|+ ...|..+..++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPP---TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence 7788888888877777754 2343 4555556666554443
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=1.5e-06 Score=74.37 Aligned_cols=182 Identities=8% Similarity=0.018 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH----
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI---- 211 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~---- 211 (417)
...+-.+...+.+.|++++|...|+.+.+..+..+. ...+..+..+|.+.|++++|+..|+++.+. .|+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~~ 78 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNID 78 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcHH
Confidence 344455556677778888888888877765432121 356667777777888888888888877764 2221
Q ss_pred HHHHHHHHHHHh------------------cCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 014860 212 RSYNILFTAFLS------------------RGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVND 272 (417)
Q Consensus 212 ~~~~~li~~~~~------------------~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~ 272 (417)
..+..+..++.. .|+ .++|...|+++.+.. |+. ..+.+....
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~--P~~~~a~~a~~~l--------- 139 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQ--------ARAAFSDFSKLVRGY--PNSQYTTDATKRL--------- 139 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHH--------HHHHHHHHHHHHTTC--TTCTTHHHHHHHH---------
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHH--------HHHHHHHHHHHHHHC--cCChhHHHHHHHH---------
Confidence 233333333333 455 999999999999763 443 233221110
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 273 ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS----SKSYNSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 273 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 348 (417)
..+...+.. ..-.+...|.+.|++++|...|+++.+.- |+ ...+..+..+|.+.|+.++|.+.+
T Consensus 140 -~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 140 -VFLKDRLAK---------YEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -HHHHHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHH---------HHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 011111111 12345667888889999999998888752 33 256778888888999999999998
Q ss_pred HHHHHc
Q 014860 349 WEMIEK 354 (417)
Q Consensus 349 ~~m~~~ 354 (417)
+.+...
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 888776
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=4.1e-06 Score=70.90 Aligned_cols=178 Identities=11% Similarity=-0.045 Sum_probs=145.6
Q ss_pred HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 014860 191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN-- 268 (417)
Q Consensus 191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-- 268 (417)
+|.+.|++..+. -+...+..+-..|...++ .++|++.|++..+.| +...+..|-..|.. +
T Consensus 4 eA~~~~~~aa~~------g~~~a~~~lg~~~~~~~~--------~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~ 65 (212)
T 3rjv_A 4 EPGSQYQQQAEA------GDRRAQYYLADTWVSSGD--------YQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQ 65 (212)
T ss_dssp CTTHHHHHHHHT------TCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STT
T ss_pred hHHHHHHHHHHC------CCHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCC
Confidence 467788888775 278888999999999999 999999999999876 56777777777877 6
Q ss_pred --CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----
Q 014860 269 --HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFV-PSSKSYNSLVSALAL---- 337 (417)
Q Consensus 269 --~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~---- 337 (417)
+.++|.+.|+...+ . -+...+..|-..|.. .+++++|.++|++..+.|.. .+...+..|-..|..
T Consensus 66 ~~~~~~A~~~~~~A~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 66 QADYPQARQLAEKAVE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp SCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 89999999999977 3 467778888888877 88999999999999887531 126788889899988
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-----CHhHHHHHHHHHHHCCCC
Q 014860 338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR-G-----RAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~p 392 (417)
.++.++|..+|++..+. ..+...+..|-..|... | +.++|...|+...+.|.+
T Consensus 142 ~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp SCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88999999999999887 23455677777777654 3 899999999999998854
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=2.3e-07 Score=76.09 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVKNLWE 350 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (417)
..+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 333444444444444444444444443332111 123334444444444444444444433
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=1.4e-05 Score=71.40 Aligned_cols=224 Identities=10% Similarity=0.005 Sum_probs=145.5
Q ss_pred HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH----H
Q 014860 111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK--MYQEMDDVVNQMLATPSFCGTEALYNTIIYFF----A 184 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~----~ 184 (417)
.......++|+++++.+.... +-+..+|+.--.++...+ +++++++.++.+....+ .+..+|+.--..+ .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHH
Confidence 344555678888888887544 446667777777777777 88888888888887665 4556666555444 4
Q ss_pred Hh---CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHH--HHHHHHHHHHHCCCCCCHHHHHH
Q 014860 185 EA---RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYME--TIRCLFKQMVNDGIEPDIFSLNS 259 (417)
Q Consensus 185 ~~---g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ 259 (417)
.. +++++++.+++.+.+. -+-+..+|+.-.-.+.+.|. ++ ++++.++++.+.. .-|-..|+-
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d-~~N~sAW~~ 185 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTD-LKNNSAWSH 185 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 55 6788888888888875 25577788887777777777 66 7888888888765 346667765
Q ss_pred HHHHHHhcCC------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHH
Q 014860 260 MIKGYILSNH------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN-ARELCDEMKRKG--FVPSSKSYNS 330 (417)
Q Consensus 260 li~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~~~~~ 330 (417)
-...+.+.|. ++++++.++.+... -+-|...|+.+-..+.+.|+... +..+..+..+.+ -..+...+..
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 263 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET 263 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 5555555554 66666666666541 13466666666666666665333 344444443322 1225556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 014860 331 LVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+...|.+.|+.++|.++++.+.+
T Consensus 264 la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 264 LAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHh
Confidence 66666666666666666666654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2e-07 Score=93.63 Aligned_cols=173 Identities=10% Similarity=-0.016 Sum_probs=142.6
Q ss_pred HccCChhHHHHHHHHHH--------cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860 148 GAAKMYQEMDDVVNQML--------ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT 219 (417)
Q Consensus 148 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~ 219 (417)
...|++++|.+.+++.. +... .+...+..+...|.+.|++++|++.|++..+. -+.+...|..+-.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchHHHHHHHHH
Confidence 68899999999999998 4332 56788999999999999999999999999875 2446788999999
Q ss_pred HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 014860 220 AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG 299 (417)
Q Consensus 220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 299 (417)
.+...|+ +++|++.|++..+.. +-+...+..+-.+|.+.|++++ .+.|++..+.. +.+...|..+..+
T Consensus 476 ~~~~~g~--------~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 476 AELLTGD--------YDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARA 543 (681)
T ss_dssp HHHHHTC--------HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHcCC--------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHH
Confidence 9999999 999999999998765 3467788899999999999999 99999887621 3467789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 014860 300 LCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGE 340 (417)
Q Consensus 300 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 340 (417)
+.+.|++++|.+.|++..+. .|+ ...+..+..++...|+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999999999999988764 455 5677777777766554
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=7.1e-07 Score=87.70 Aligned_cols=152 Identities=10% Similarity=-0.058 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.++|.+.|++..+.. +-+...+..+-..|...|++++|.+.+++..+. -+.+...|..+...|...|++++|.+.++
T Consensus 5 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 5 GPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 889999999987664 345788999999999999999999999998762 23467889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHCCC
Q 014860 315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR---GRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~ 391 (417)
+..+.. +-+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...+... |+.++|.+.+++..+.+.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 998764 2367899999999999999999999999998862 34577888999999999 999999999999988765
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=7.2e-06 Score=73.25 Aligned_cols=234 Identities=7% Similarity=-0.015 Sum_probs=181.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH----Hh
Q 014860 150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR--KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF----LS 223 (417)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~----~~ 223 (417)
...-++|.++.+.++...+ .+..+|+.--..+...| ++++++++++.+... .+-+..+|+.--..+ ..
T Consensus 46 ~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 46 EEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHh
Confidence 3444689999999988765 56778888888888888 999999999999986 234566777755555 44
Q ss_pred c---CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860 224 R---GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN--DALRIFHQMGVVYNYLPNSFSYDYLIH 298 (417)
Q Consensus 224 ~---g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~~li~ 298 (417)
. ++ +++++++++.+.+.. +-+-.+|+----.+.+.|.++ ++++.++.+.+. + .-|-..|+.-..
T Consensus 120 l~~~~~--------~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ 188 (306)
T 3dra_A 120 NNNDFD--------PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFF 188 (306)
T ss_dssp TTTCCC--------THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred ccccCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHH
Confidence 4 56 899999999999865 457788888777777888888 999999999873 2 367888888777
Q ss_pred HHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 014860 299 GLCAQGR------TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEE-TVKNLWEMIEKQ--RPVDFITYRTVLDE 369 (417)
Q Consensus 299 ~~~~~g~------~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~ 369 (417)
.+.+.|. ++++++.++.+...... |...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 7777776 89999999999887554 88999999889988888444 445666655432 24577889999999
Q ss_pred HHHcCCHhHHHHHHHHHHHC-CCCChhhHHHHH
Q 014860 370 ICRRGRAGEAMKLLKELQNK-NLIDGYTYTKLL 401 (417)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll 401 (417)
|.+.|+.++|.++++.+.+. +.....-|+-..
T Consensus 268 ~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 99999999999999999874 544555555443
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=5e-06 Score=70.35 Aligned_cols=176 Identities=9% Similarity=-0.023 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC----Cccch
Q 014860 155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG----KNTYI 230 (417)
Q Consensus 155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g----~~~~~ 230 (417)
+|.+.|....+. .+...+..+...|...+++++|++.|++..+. | +...+..+-..|.. + +
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g---~~~a~~~lg~~y~~-~g~~~~---- 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---G---DGDALALLAQLKIR-NPQQAD---- 68 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTS-STTSCC----
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHc-CCCCCC----
Confidence 355666666665 35567777777777788888888888887765 2 56666666666666 5 5
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCC-CCHHHHHHHHHHHHh---
Q 014860 231 NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYL-PNSFSYDYLIHGLCA--- 302 (417)
Q Consensus 231 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~--- 302 (417)
.++|++.|++..+.| +...+..|-..|.. .+++++|.+.|+...+ .+.. .+...+..|-..|..
T Consensus 69 ----~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 69 ----YPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp ----HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSS
T ss_pred ----HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCC
Confidence 788888888877654 55566666666666 6788888888887765 2211 015677777777777
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 014860 303 -QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN-G-----EVEETVKNLWEMIEKQ 355 (417)
Q Consensus 303 -~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 355 (417)
.+++++|..+|++..+.+ .+...+..|-..|... | +.++|..+|++..+.|
T Consensus 141 ~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 778888888888887761 2444566666666653 3 7888888888887776
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=1.1e-06 Score=86.37 Aligned_cols=153 Identities=8% Similarity=-0.044 Sum_probs=114.4
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV 193 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 193 (417)
.|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888999998876543 45688888999999999999999999999988764 56888999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH
Q 014860 194 YVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS---NHV 270 (417)
Q Consensus 194 ~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~ 270 (417)
+.|++..+. .+.+...|..+...+...|+ +++|.+.|++..+.. +-+...+..+...+... |+.
T Consensus 78 ~~~~~al~~----~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 78 VLLQQASDA----APEHPGIALWLGHALEDAGQ--------AEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp HHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHHHhc----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH
Confidence 999998875 13457889999999999999 999999999988764 34577888888889998 999
Q ss_pred HHHHHHHHHhhhh
Q 014860 271 NDALRIFHQMGVV 283 (417)
Q Consensus 271 ~~a~~~~~~m~~~ 283 (417)
++|.+.+++..+.
T Consensus 145 ~~A~~~~~~al~~ 157 (568)
T 2vsy_A 145 DVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888763
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=2.7e-06 Score=72.69 Aligned_cols=170 Identities=12% Similarity=0.003 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860 210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-P-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL 287 (417)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 287 (417)
+...+..+...+...|+ +++|+..|+++.+.... | ....+..+..+|.+.|++++|...|+...+...-.
T Consensus 3 ~~~~~~~~a~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN--------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 44556677778899999 99999999999875321 1 13577788899999999999999999987743222
Q ss_pred CCH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HH
Q 014860 288 PNS-FSYDYLIHGLCA------------------QGRTKNARELCDEMKRKGFVPS-SKSY-----------------NS 330 (417)
Q Consensus 288 ~~~-~~~~~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~-~~~~-----------------~~ 330 (417)
+.. ..+-.+..++.. .|++++|...|+++.+.. |+ ...+ ..
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 322 234334444433 578999999999998763 33 2222 24
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 331 LVSALALNGEVEETVKNLWEMIEKQRPVD----FITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
+...|.+.|++++|...|+++.+. -|+ ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 556788999999999999999986 233 24678889999999999999999999988764
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=1.7e-06 Score=73.00 Aligned_cols=164 Identities=13% Similarity=0.091 Sum_probs=88.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHH----------------HHHHHHhcCCccchhhhhHHHHH
Q 014860 177 NTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNI----------------LFTAFLSRGKNTYINHVYMETIR 239 (417)
Q Consensus 177 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~----------------li~~~~~~g~~~~~~~~~~~~a~ 239 (417)
-.....+.+.|++++|+..|++..+. .|+ ...|.. +...+...|+ +++|+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~ 74 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDKAY 74 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHHHH
Confidence 34445566777788888877777764 332 333444 6666666666 66777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 014860 240 CLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR--TKNARELCDEMK 317 (417)
Q Consensus 240 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~ 317 (417)
..|++..+.. +-+...+..+-..|...|++++|...|++..+.. +.+...|..+...|...|+ .+.+...+....
T Consensus 75 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 75 LFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 6666666543 2345566666666666666666666666665421 2345555555555544432 223333333332
Q ss_pred HCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014860 318 RKGFVPSSK--SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT 362 (417)
Q Consensus 318 ~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 362 (417)
.|+.. .+...-.++...|++++|...|++..+. .|+...
T Consensus 152 ----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 152 ----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred ----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 22222 2222333444556666666666665543 455443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=3e-06 Score=75.40 Aligned_cols=159 Identities=10% Similarity=0.011 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
..+..+...+...|+ .++|...|++..+.. +-+...+..+...+.+.|++++|...++..... .|+..
T Consensus 118 ~~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~ 185 (287)
T 3qou_A 118 ELXAQQAMQLMQESN--------YTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTR 185 (287)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHH
T ss_pred hhHHHHHHHHHhCCC--------HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchH
Confidence 334444444555555 555555555554432 223444445555555555555555555554331 13322
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 014860 292 SYDYL-IHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD---FITYRTVL 367 (417)
Q Consensus 292 ~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 367 (417)
..... ...+...++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+.. |+ ...+..+.
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~ 262 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHH
Confidence 22111 112334445555555555555432 1244555555556666666666666665555541 22 34555555
Q ss_pred HHHHHcCCHhHHHHHHHH
Q 014860 368 DEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~ 385 (417)
..|...|+.++|...+++
T Consensus 263 ~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 263 EILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHH
Confidence 666666666665555554
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=1.2e-06 Score=78.90 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=152.6
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV 193 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 193 (417)
.|++++|.++++...+... .. .+...+++++|...+... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 4667778888876643221 10 011146666666666543 56778889999999
Q ss_pred HHHHHhHhCC-CCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 014860 194 YVFKYMKNSR-NLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEPD--IFSLNSMIKGYI 265 (417)
Q Consensus 194 ~~~~~m~~~~-~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~ 265 (417)
..|.+..+.. ..+-.. -..+|+.+...|...|+ +++|+..|++..+. | .+. ..+++.+-..|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR--------MPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------GGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 9888776531 001111 14578888999999999 78888877765532 2 222 357778888888
Q ss_pred hcCCHHHHHHHHHHhhhhC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHH
Q 014860 266 LSNHVNDALRIFHQMGVVY---NYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPS-SKSYNSLVSALA 336 (417)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~ 336 (417)
. |++++|.+.|++..... +-. ....++..+...|.+.|++++|...|++..+. +..++ ...+..+..++.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 8 99999999998875421 110 11467888899999999999999999988753 22222 236677777888
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCH--HHHHHHHHHHHHcCCHhHHHHH
Q 014860 337 LNGEVEETVKNLWEMIEKQ--RPVDF--ITYRTVLDEICRRGRAGEAMKL 382 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g--~~p~~--~~~~~li~~~~~~g~~~~A~~~ 382 (417)
..|++++|...|++.. .. ..... .....++.++ ..|+.+.+.++
T Consensus 207 ~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8899999999999988 41 11111 2344555555 57777666663
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=1.2e-06 Score=71.68 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860 213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292 (417)
Q Consensus 213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 292 (417)
.+..+...+...|+ +++|...|++..+.. +-+...+..+...+...|++++|...++...... |+...
T Consensus 8 ~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGE--------HAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSY 75 (176)
T ss_dssp THHHHHHHHHHTTC--------HHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHH
T ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHH
Confidence 34566777889999 999999999877643 3467788999999999999999999999986632 34433
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 014860 293 YDYLIHG-LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV-DFITYRTVLDEI 370 (417)
Q Consensus 293 ~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 370 (417)
+..+... +...+...+|...+++..+... -+...+..+..++...|++++|...|+++.+..-.+ +...+..+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 3322211 2222333457888888877532 258889999999999999999999999998863222 356888899999
Q ss_pred HHcCCHhHHHHHHHHHHH
Q 014860 371 CRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~ 388 (417)
...|+.++|...|++...
T Consensus 155 ~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHCSSCHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHH
Confidence 999999999999987654
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=4.9e-06 Score=70.05 Aligned_cols=143 Identities=10% Similarity=-0.053 Sum_probs=112.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA 336 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 336 (417)
+..+...+...|++++|.+.|++.. .++...|..+...|...|++++|...+++..+.. +.+...|..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4455667788999999999998774 3688899999999999999999999999988764 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHH
Q 014860 337 LNGEVEETVKNLWEMIEKQR--------------PV-DFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKL 400 (417)
Q Consensus 337 ~~g~~~~A~~~~~~m~~~g~--------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~l 400 (417)
..|++++|.+.|++..+..- .| ....+..+..+|...|++++|.+.|++..+... .....+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 99999999999999988521 11 126778888899999999999999999988765 233344444
Q ss_pred HHHHH
Q 014860 401 LDVLE 405 (417)
Q Consensus 401 l~~~~ 405 (417)
+..+.
T Consensus 163 ~~~~~ 167 (213)
T 1hh8_A 163 MECVW 167 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.58 E-value=2.7e-07 Score=73.57 Aligned_cols=106 Identities=8% Similarity=0.025 Sum_probs=53.8
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
..|++++|+..+....... +-+...+-.+...|.+.|++++|.+.++...+..+ .+..+|..+..+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCchHHH
Confidence 3455555555555543211 11222333444555555555555555555555443 3455555555555555555555
Q ss_pred HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+..|++..+.. +-+..+|..+...|.+.|+
T Consensus 85 ~~~~~~al~~~----p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 85 VECYRRSVELN----PTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 55555555431 2234555555555555555
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.58 E-value=6e-06 Score=82.07 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhh
Q 014860 154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV-YVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINH 232 (417)
Q Consensus 154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~ 232 (417)
+.+..+|++.+..-. -+...|-..+..+.+.|+.++|. ++|++.... ++.+...|-..+...-+.|+
T Consensus 326 ~Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~ee~~~~------ 393 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVC--FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC----IPNSAVLAFSLSEQYELNTK------ 393 (679)
T ss_dssp HHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCC------
Confidence 345677888877543 57788999999999999999997 999999874 45677778888999999999
Q ss_pred hhHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCCCCCH
Q 014860 233 VYMETIRCLFKQMVNDGI---------EPD------------IFSLNSMIKGYILSNHVNDALRIFHQMGVV-YNYLPNS 290 (417)
Q Consensus 233 ~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~ 290 (417)
.++|.++|+.+.+... .|+ ..+|...+....+.|..+.|..+|....+. ....+..
T Consensus 394 --~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 394 --IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred --HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 9999999998876310 132 346888888888899999999999999873 1222333
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQ-GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV--DFITYRTVL 367 (417)
Q Consensus 291 ~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li 367 (417)
....+.+. .+. ++.+.|..+|+...+. ..-+...|...+......|+.+.|..+|+........+ ....|...+
T Consensus 472 yi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 472 YLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp HHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred HHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33333333 333 4599999999998876 44467778888998889999999999999988763222 335788888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCC
Q 014860 368 DEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.-=.+.|+.+.+.++.+++.+.-
T Consensus 549 ~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 87788999999999999999874
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=1e-06 Score=79.37 Aligned_cols=205 Identities=9% Similarity=0.028 Sum_probs=144.0
Q ss_pred cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCH
Q 014860 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKL 189 (417)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~ 189 (417)
.++++.|...|..+ ...+...|++++|.+.+....+......+ ..+|+.+...|.+.|++
T Consensus 29 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 92 (307)
T 2ifu_A 29 KPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92 (307)
T ss_dssp SCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH
Confidence 46788888877665 35677899999999998887764211112 45788899999999999
Q ss_pred HHHHHHHHHhHhCC-CCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 014860 190 SRAVYVFKYMKNSR-NLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEP-DIFSLNSMIK 262 (417)
Q Consensus 190 ~~a~~~~~~m~~~~-~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~ 262 (417)
++|+..|++..+.- ..|-.. ...+++.+-..|.. |+ +++|++.|++..+. |-.. ...+++.+..
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 163 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD--------LSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC--------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999876430 001111 24578888888888 99 99999999887643 2111 1467888899
Q ss_pred HHHhcCCHHHHHHHHHHhhhhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 014860 263 GYILSNHVNDALRIFHQMGVVY---NYLPN-SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS------SKSYNSLV 332 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~~~~~li 332 (417)
.|.+.|++++|...|++..... +..+. ...+..+...+...|++++|...|++.. . .|+ ......++
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHH
Confidence 9999999999999999886521 11111 2366677777888899999999999987 4 232 22345556
Q ss_pred HHHHhcCCHHHHHHH
Q 014860 333 SALALNGEVEETVKN 347 (417)
Q Consensus 333 ~~~~~~g~~~~A~~~ 347 (417)
.++ ..|+.+.+.++
T Consensus 241 ~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 241 QAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHH-HTTCHHHHHHH
T ss_pred HHH-HhcCHHHHHHH
Confidence 655 56777666553
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=2.5e-05 Score=69.57 Aligned_cols=203 Identities=9% Similarity=0.047 Sum_probs=123.9
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCC
Q 014860 130 QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEA---LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLE 206 (417)
Q Consensus 130 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g 206 (417)
.....|+..+...+...+.-.- + .++. .... .+.. .+...+..+...|++++|..++++..+.. .
T Consensus 39 ~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~-~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~ 106 (293)
T 3u3w_A 39 SGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIY-SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--E 106 (293)
T ss_dssp TTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred CCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCC-CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--c
Confidence 4445788888888877765322 1 1221 1111 2223 33344778889999999999999988752 1
Q ss_pred CCCCH----HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 207 CRPSI----RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PD----IFSLNSMIKGYILSNHVNDALRIF 277 (417)
Q Consensus 207 ~~p~~----~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~ 277 (417)
..|+. ..+..+...+...++ +++|+..|++..+.... ++ ..+++.+...|...|++++|...|
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~--------~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 178 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSC--------HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccC--------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22332 133346666666778 89999999998874322 22 236778888888888888888888
Q ss_pred HHhhhh---C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHH
Q 014860 278 HQMGVV---Y-NYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPS-SKSYNSLVSALALNG-EVEETVK 346 (417)
Q Consensus 278 ~~m~~~---~-~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g-~~~~A~~ 346 (417)
++..+. . +..+ ...+|..+...|.+.|++++|...+++..+. +..+. ..+|..+-.+|.+.| ..++|.+
T Consensus 179 ~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 877531 1 1111 1235666666777777777777776655432 22222 455666666666666 3466666
Q ss_pred HHHHHH
Q 014860 347 NLWEMI 352 (417)
Q Consensus 347 ~~~~m~ 352 (417)
.+++..
T Consensus 259 ~~~~Al 264 (293)
T 3u3w_A 259 AYKKAS 264 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 115
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.55 E-value=7.6e-06 Score=81.33 Aligned_cols=236 Identities=10% Similarity=0.052 Sum_probs=175.4
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 014860 118 LVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMD-DVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVF 196 (417)
Q Consensus 118 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 196 (417)
+.+..+|+.+.... +.+...|-..+..+...|+.++|. ++++.....-+ .+...|-..+...-+.|++++|.++|
T Consensus 326 ~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP--NSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34566787776543 568888888888888999999996 99999987432 56777888999999999999999999
Q ss_pred HHhHhCCCC------CCCCC------------HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC-C-CCCCHHH
Q 014860 197 KYMKNSRNL------ECRPS------------IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND-G-IEPDIFS 256 (417)
Q Consensus 197 ~~m~~~~~~------g~~p~------------~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~ 256 (417)
+.+...... .-.|+ ...|...+....+.|+ .+.|.++|.+..+. + ..+....
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--------l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--------LAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhcCCCChHHHH
Confidence 998863000 00132 3468888888888898 99999999999876 2 2233333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP--SSKSYNSLVSA 334 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~ 334 (417)
..+.+.-. ..++.+.|.++|+...+. ++.+...|...+......|+.+.|..+|++.......+ ....|...+..
T Consensus 474 ~~A~lE~~-~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 474 ENAYIEYH-ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHT-TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33334322 235589999999998874 34566777888888888999999999999998764322 35689999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860 335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI 370 (417)
Q Consensus 335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 370 (417)
-.+.|+.+.+.++.+++.+. -|+......+++-|
T Consensus 551 E~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 99999999999999999987 24433334444433
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=2.7e-05 Score=69.35 Aligned_cols=167 Identities=8% Similarity=0.009 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH------HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI------RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~------~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
..+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|+ +++|+..+++..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~ 143 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CCCHHHHHHHHHHHHHHHHHHTSSC--------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc----cCChhHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHH
Confidence 455567788889999999999998877651 1111 223445556677778 8888888888775
Q ss_pred CCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh---hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 248 DGI---EPD--IFSLNSMIKGYILSNHVNDALRIFHQMGV---VYNYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 248 ~g~---~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
... .+. ..+++.+-..|...|++++|...|++..+ ..+-.+ ...++..+...|...|++++|...+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 321 111 34677777778888888888888877652 111111 12466666677777777777777776654
Q ss_pred HC----CCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 014860 318 RK----GFVPS-SKSYNSLVSALALNGEVEET-VKNLWEMI 352 (417)
Q Consensus 318 ~~----g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 352 (417)
+. +.... ..+|..+..+|.+.|+.++| ...+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 32 11111 44566666666666666666 55555443
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.53 E-value=7.8e-07 Score=70.86 Aligned_cols=140 Identities=10% Similarity=-0.007 Sum_probs=96.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 341 (417)
.+...|++++|...+..... ..| +...+-.+-..|.+.|++++|.+.|++..+.... +..+|..+..+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 34456777888777777644 122 2334556777788888888888888888775322 677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH-HHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 342 EETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKL-LKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
++|...|++..+.. +-+...|..+...|.+.|+.++|.+. +++..+...-+...|...-+.+...
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 88888888888752 23566788888888888888766554 5776665433666666555555444
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=2.3e-05 Score=69.82 Aligned_cols=170 Identities=8% Similarity=-0.065 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 014860 211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-----FSLNSMIKGYILSNHVNDALRIFHQMGVVYN 285 (417)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 285 (417)
...+...+..+...|+ +++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+...
T Consensus 75 ~~~l~~~~~~~~~~~~--------y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKR--------YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhh--------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 4556677888899999 99999999988875422111 2234455667788999999999998764111
Q ss_pred --CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 014860 286 --YLPN--SFSYDYLIHGLCAQGRTKNARELCDEMKR---K-GFVP--SSKSYNSLVSALALNGEVEETVKNLWEMIEK- 354 (417)
Q Consensus 286 --~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 354 (417)
..+. ..+|+.+...|...|++++|...+++..+ . +..+ ...+++.+...|...|++++|...+++..+.
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1122 45889999999999999999999998872 2 1111 1258889999999999999999999987754
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCCHhHH-HHHHHHHHH
Q 014860 355 ---QRPVD-FITYRTVLDEICRRGRAGEA-MKLLKELQN 388 (417)
Q Consensus 355 ---g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 388 (417)
+.... ..+|..+...|.+.|+.++| ...+++...
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 22222 56788899999999999999 777776554
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=9.8e-06 Score=68.14 Aligned_cols=130 Identities=7% Similarity=-0.044 Sum_probs=109.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFA 184 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 184 (417)
..+...+...|++++|++.|+.+. .++...+..+...+...|++++|.+.++...+... .+...+..+..+|.
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHH
Confidence 345566778999999999998773 56889999999999999999999999999988764 67889999999999
Q ss_pred HhCCHHHHHHHHHHhHhCCCC-C----------CCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 185 EARKLSRAVYVFKYMKNSRNL-E----------CRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 185 ~~g~~~~a~~~~~~m~~~~~~-g----------~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
+.|++++|+..|++..+.... . ..| ....|..+...+...|+ +++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--------WKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--------HHHHHHHHHHHHHcC
Confidence 999999999999999885200 0 111 23778899999999999 999999999998764
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=8.2e-06 Score=61.62 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI 370 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 370 (417)
..|..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 444555555555555555555555555432 1234455555555555566666655555555431 23444555555555
Q ss_pred HHcCCHhHHHHHHHHHHHCC
Q 014860 371 CRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (417)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 56666666666666555543
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=0.0001 Score=66.73 Aligned_cols=189 Identities=8% Similarity=-0.023 Sum_probs=135.5
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE 185 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 185 (417)
+...+...+..++|+++++.+.... +-+..+|+.--.++...| .++++.++++.+..... .+..+|+.-...+.+
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH
Confidence 3444456667789999999997654 456777888777777888 59999999999998776 688899988888888
Q ss_pred h-C-CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 186 A-R-KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 186 ~-g-~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 263 (417)
. + ++++++++++.+.+. -+-+..+|+.-.-.+.+.|.........++++++.++++.+.. .-|...|+-.-..
T Consensus 136 l~~~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~l 210 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYL 210 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7 7 899999999999986 2557888887655555544411111112458888888888765 4477788877777
Q ss_pred HHhcCC-------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 264 YILSNH-------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT 306 (417)
Q Consensus 264 ~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 306 (417)
+.+.++ ++++++.+++.... -+-|...|+.+-..+.+.|+.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence 777665 56777777766542 235667777766666665543
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=8.6e-06 Score=65.26 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF 255 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 255 (417)
+..+...+...|++++|...|++..+. .+.+...|..+...+...|+ +++|.+.+++..+.. +.+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~ 82 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIK 82 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cccHH
Confidence 334444444444444444444444432 12234444444444444444 444444444444332 22333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
.+..+...+...|++++|.+.|++..
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=4e-06 Score=69.85 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=105.7
Q ss_pred HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCCCCC-CHHHHHHHHHHHHhcC
Q 014860 148 GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLECRP-SIRSYNILFTAFLSRG 225 (417)
Q Consensus 148 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~p-~~~~~~~li~~~~~~g 225 (417)
...|++++|.++++.+...+. ....++..+...|...|++++|...|++..+.- ..+..+ ...++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457888888886555544322 457788889999999999999999998877620 001122 3567888888999999
Q ss_pred CccchhhhhHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHH
Q 014860 226 KNTYINHVYMETIRCLFKQMVND----GIEP--DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDY 295 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ 295 (417)
+ +++|.+.+++..+. +-.+ ....+..+-..+...|++++|.+.+++......-..+ ..++..
T Consensus 81 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 81 N--------WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp C--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9 99999998876642 2111 2345677778888889999988888876531110111 223456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 014860 296 LIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~ 317 (417)
+...+...|++++|.+.+++..
T Consensus 153 la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHH
Confidence 6666777777777777666554
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=9.2e-06 Score=65.07 Aligned_cols=129 Identities=10% Similarity=0.005 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860 138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217 (417)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l 217 (417)
..+..+...+...|++++|...++...+... .+..++..+...+...|++++|...|++..+. .+.+...|..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~ 87 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcccHHHHHHH
Confidence 4455666677788888888888888877653 46778888888888888888888888888775 23457778888
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhh
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN--SMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
...+...|+ +++|.+.|++..+.. +.+...+. .....+.+.|++++|.+.+....
T Consensus 88 a~~~~~~~~--------~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGK--------FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888 888888888887654 22344443 33333666778888877776654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=1.1e-05 Score=60.92 Aligned_cols=96 Identities=7% Similarity=0.097 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860 138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217 (417)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l 217 (417)
..+..+...+...|++++|.+.++.+.+... .+..++..+...+.+.|++++|..+|+++.+. .+.+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l 83 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHH
Confidence 3444444444455555555555554444322 23444444445555555555555555544442 12234444444
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
...+...|+ +++|...|+++.+
T Consensus 84 a~~~~~~~~--------~~~A~~~~~~~~~ 105 (125)
T 1na0_A 84 GNAYYKQGD--------YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred HHHHHHhcC--------HHHHHHHHHHHHH
Confidence 445555555 5555555544443
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=1.2e-05 Score=71.62 Aligned_cols=166 Identities=8% Similarity=-0.051 Sum_probs=119.9
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHH
Q 014860 108 CNVMTLQEDPLVCLELFNWASKQPRFRHDAS----TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTI 179 (417)
Q Consensus 108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~l 179 (417)
+..+...++++.|.++++...+.....++.. .+..+...+...+++++|...++...+......+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566788999999999999876554444432 3334666677888999999999999885332233 3478999
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCC-C-CCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCCCC
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRN-L-ECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGIEP 252 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~-~-g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~~p 252 (417)
...|...|++++|+..|+++.+.-. . +..+ ...+|..+...|.+.|+ +++|.+.+++..+ .+..+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--------y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--------YEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHcCcHH
Confidence 9999999999999999999874100 0 1122 23478889999999999 9999998887764 22222
Q ss_pred C-HHHHHHHHHHHHhcCC-HHHHHHHHHHhh
Q 014860 253 D-IFSLNSMIKGYILSNH-VNDALRIFHQMG 281 (417)
Q Consensus 253 ~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 281 (417)
. ..+|..+-.+|.+.|+ +++|.+.+++..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 5677778888888884 588877777654
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=3.4e-05 Score=67.53 Aligned_cols=202 Identities=7% Similarity=-0.128 Sum_probs=141.2
Q ss_pred ccCChhHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHhHhCC--------C-CCCC----
Q 014860 149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTI-------IYFFAEARKLSRAVYVFKYMKNSR--------N-LECR---- 208 (417)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~--------~-~g~~---- 208 (417)
..++.+.|.+.|.+..+..+ .....|..+ ...+.+.++..+++..+..-.... . .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 57899999999999988765 456777777 455556555666655555544310 0 1110
Q ss_pred ----CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 014860 209 ----PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY 284 (417)
Q Consensus 209 ----p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 284 (417)
--...+-.....+...|+ +++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+.... .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~--------y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~ 164 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGN--------YADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-W 164 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTC--------HHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-C
T ss_pred cccCCHhHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-c
Confidence 012345567778889999 999999999887654 5444555566678899999999999986654 1
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 014860 285 NYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF 360 (417)
Q Consensus 285 ~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 360 (417)
. .| ....+..+-.++...|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++... .|+.
T Consensus 165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~ 241 (282)
T 4f3v_A 165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEP 241 (282)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCH
T ss_pred C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH
Confidence 1 11 134677778889999999999999999875443254 345667777888999999999999999986 4564
Q ss_pred HHHHHH
Q 014860 361 ITYRTV 366 (417)
Q Consensus 361 ~~~~~l 366 (417)
..+..|
T Consensus 242 ~~~~aL 247 (282)
T 4f3v_A 242 KVAAAL 247 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.00016 Score=65.40 Aligned_cols=234 Identities=7% Similarity=-0.025 Sum_probs=170.0
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc-C-C
Q 014860 150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR-KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR-G-K 226 (417)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~-g-~ 226 (417)
.+..++|.++.+.++.... .+..+|+.--..+...| .+++++++++.+... .+-+..+|+.--..+... + +
T Consensus 67 ~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSC
T ss_pred CCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCC
Confidence 3445689999999988775 57778888888888888 599999999999985 345678899877777776 6 6
Q ss_pred ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN--------DALRIFHQMGVVYNYLPNSFSYDYLIH 298 (417)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~~li~ 298 (417)
.++++++++.+.+.. +-|-.+|+--.-.+.+.|.++ ++++.++++.+. . .-|...|+..-.
T Consensus 141 --------~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~ 209 (349)
T 3q7a_A 141 --------PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWY 209 (349)
T ss_dssp --------CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHH
Confidence 789999999999765 446777776555555555555 899999988772 2 468888998888
Q ss_pred HHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHH
Q 014860 299 GLCAQGR-------TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV--------------------EETVKNLWEM 351 (417)
Q Consensus 299 ~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m 351 (417)
.+.+.++ ++++++.++++...... |...|+-+-..+.+.|+. .+..+...++
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 8888876 68899999888876444 788898877777776653 2333333333
Q ss_pred HHcC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCChhhHHHHH
Q 014860 352 IEKQ-----RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK-NLIDGYTYTKLL 401 (417)
Q Consensus 352 ~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll 401 (417)
...+ -.++......|...|...|+.++|.++++.+.+. +.+...-|+-..
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 3221 1367788899999999999999999999999755 323444444333
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=1.5e-05 Score=61.11 Aligned_cols=107 Identities=8% Similarity=-0.018 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI 370 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 370 (417)
..+...-..|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555666677777777777777666543 2256666777777777777777777777766642 33455666677777
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCChhhHHH
Q 014860 371 CRRGRAGEAMKLLKELQNKNLIDGYTYTK 399 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ 399 (417)
...|++++|.+.|++..+...-+...+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 77777777777777776654334444433
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=1.3e-05 Score=61.36 Aligned_cols=100 Identities=8% Similarity=-0.012 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY 214 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~ 214 (417)
.+...+..+...+...|++++|...++...+... .+...+..+...|...|++++|++.|++..+. .+.+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQL----EPTFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCchHHH
Confidence 3455555555566666666666666666655433 34555666666666666666666666665553 12345556
Q ss_pred HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
..+...+...|+ +++|.+.|++..+.
T Consensus 88 ~~la~~~~~~~~--------~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKD--------YTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--------HHHHHHHHHHHHHh
Confidence 666666666666 66666666665543
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=5.4e-06 Score=69.02 Aligned_cols=158 Identities=11% Similarity=0.007 Sum_probs=96.2
Q ss_pred HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCCC-CCHHHHH
Q 014860 184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGIE-PDIFSLN 258 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~~-p~~~~~~ 258 (417)
...|++++|.++++.+... ......++..+...+...|+ +++|...+++..+ .+.. ....++.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 70 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH----PATASGARFMLGYVYAFMDR--------FDEARASFQALQQQAQKSGDHTAEHRALH 70 (203)
T ss_dssp ----CHHHHHHHHHHHHTS----TTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4678999999966655442 12356778888888999999 8999988888765 2211 2245666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh---CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVV---YNYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SSKSY 328 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~ 328 (417)
.+-..|...|++++|.+.+++.... .+-.+ ....+..+...+...|++++|...+++.... +... -..++
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 150 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF 150 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 7777778888888888887766542 11111 1334566666677777777777777665532 1110 02234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 329 NSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
..+...+...|++++|.+.+++..+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5555666666666666666655543
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=1.5e-05 Score=60.72 Aligned_cols=95 Identities=7% Similarity=0.016 Sum_probs=43.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF 218 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li 218 (417)
.+..+...+...|++++|...++...+... .+...+..+...+...|++++|...++...+. .+.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~ 87 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----CccCHHHHHHHH
Confidence 333444444444555555554444444322 23444444444444455555555555444442 122344444444
Q ss_pred HHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 219 TAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
..+...|+ +++|.+.|++..+
T Consensus 88 ~~~~~~~~--------~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 88 LALSSLNK--------HVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHTTC--------HHHHHHHHHHHHH
T ss_pred HHHHHhCC--------HHHHHHHHHHHHh
Confidence 44444444 4455544444443
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.35 E-value=1.9e-06 Score=76.45 Aligned_cols=193 Identities=10% Similarity=0.041 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...+..+...+...|++++|...++...+... .+...|..+..+|.+.|++++|+..+++..+. .+.+...|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 456667777777888888888888888877653 46777888888888888888888888887764 234567788
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD 294 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 294 (417)
.+..++...|+ +++|...|++..+.. |+. ..+...+....+.. .+... ..... .....+.....
T Consensus 77 ~lg~~~~~~g~--------~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~~~-~~~~~-~~~~~~~~i~~ 141 (281)
T 2c2l_A 77 FLGQCQLEMES--------YDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKKRW-NSIEE-RRIHQESELHS 141 (281)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHHHH-HHHHH-TCCCCCCHHHH
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHHHH-HHHHH-HHHhhhHHHHH
Confidence 88888888888 888888887776532 110 01111111111111 11111 11111 12223333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKRKGFVPSSK-SYNSLVSALALN-GEVEETVKNLWEMIE 353 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~ 353 (417)
.+ ..+ ..|++++|.+.+++..+. .|+.. ....+-..+.+. +.+++|.++|.+..+
T Consensus 142 ~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 142 YL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33 222 257777777777766553 44433 333333334443 567778888877655
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=2.2e-05 Score=60.13 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD 368 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 368 (417)
+...|..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44455555555666666666666666655432 1245555556666666666666666666655541 224455555556
Q ss_pred HHHHcCCHhHHHHHHHHHHHCC
Q 014860 369 EICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.|.+.|++++|.+.|++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 6666666666666666655543
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.31 E-value=5.3e-06 Score=67.72 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=92.7
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHhCCH--
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF-FAEARKL-- 189 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~-- 189 (417)
..|+++.|+..|+...+.. +.+...+..+...+...|++++|...++...+... .+...+..+..+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 4677888888888776543 45778888888888899999999999988887654 467777788887 7788888
Q ss_pred HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
++|...|++..+. .+.+...|..+...+...|+ +++|...|++..+..
T Consensus 98 ~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALAL----DSNEITALMLLASDAFMQAN--------YAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhhC
Confidence 9999999888875 13357778888888889998 899999998888764
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.30 E-value=2.8e-05 Score=59.60 Aligned_cols=99 Identities=9% Similarity=0.028 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
...+......+.+.|++++|.+.|++..+..+ .+...|..+..+|.+.|++++|+..|++..+.. +.+...|..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~ 86 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD----SKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----hhhhHHHHH
Confidence 34566667778888888888888888877654 567888888888888888888888888887751 345777888
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
+..++...|+ +++|.+.|++..+..
T Consensus 87 lg~~~~~~~~--------~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMRE--------WSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCC--------HHHHHHHHHHHHHHC
Confidence 8888888888 888888888887753
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=5.1e-05 Score=57.59 Aligned_cols=117 Identities=13% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA 334 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 334 (417)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344444455555555555555555544311 1234444555555555555555555555544432 1134444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860 335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR 375 (417)
Q Consensus 335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 375 (417)
|...|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 555555555555555544431 1233344444444444443
No 138
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=6.2e-05 Score=55.95 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE 369 (417)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 369 (417)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666677777777776666542 2255666666667777777777777777666542 2345566666667
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCChhhHH
Q 014860 370 ICRRGRAGEAMKLLKELQNKNLIDGYTYT 398 (417)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~ 398 (417)
+...|++++|.+.+++..+.+..+...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 77777777777777776665433433333
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=2e-05 Score=64.23 Aligned_cols=119 Identities=7% Similarity=0.129 Sum_probs=73.0
Q ss_pred ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH-HHhcCCc
Q 014860 149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTA-FLSRGKN 227 (417)
Q Consensus 149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~-~~~~g~~ 227 (417)
..|++++|...++...+... .+...+..+...|...|++++|...|++..+. .+.+...|..+... +...|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~- 94 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL----RGENAELYAALATVLYYQASQ- 94 (177)
T ss_dssp -----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHTTT-
T ss_pred hccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCC-
Confidence 45666667666666665543 45666777777777777777777777776654 12345566666666 556666
Q ss_pred cchhhhhH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 228 TYINHVYM--ETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 228 ~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+ ++|...|++..+.. +-+...+..+...|...|++++|...|+...+
T Consensus 95 -------~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 95 -------HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp -------CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6 77777777666553 23455666666667777777777777766655
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.24 E-value=8.5e-06 Score=64.78 Aligned_cols=104 Identities=5% Similarity=-0.098 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...+..+...+.+.|++++|.+.|+...+..+ .+...|..+..+|.+.|++++|+..|++..+.. +-+...|.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~ 108 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHH
Confidence 556777788889999999999999999998865 678899999999999999999999999998862 34578899
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF 255 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 255 (417)
.+-.+|...|+ +++|...|++..+.. |+..
T Consensus 109 ~lg~~~~~lg~--------~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKA--------PLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhC--CCHH
Confidence 99999999999 999999999998764 5543
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.24 E-value=4.8e-05 Score=66.57 Aligned_cols=200 Identities=11% Similarity=-0.072 Sum_probs=142.8
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHccCChhHHHHHHHHHHcC------------CCC----
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIM-------TRKLGAAKMYQEMDDVVNQMLAT------------PSF---- 169 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~------------~~~---- 169 (417)
..+++..|.+.|..+.+.. +-....|..+ ...+.+.++..++...+..-.+. |..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999997654 4567777766 45555555556655555555441 100
Q ss_pred ---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 170 ---CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 170 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
..-....-.+...+...|++++|.++|+.+... .|+......+-..+.+.++ +++|+..|+...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-----~p~~~~~~~~a~l~~~~~r--------~~dA~~~l~~a~ 162 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-----GSEHLVAWMKAVVYGAAER--------WTDVIDQVKSAG 162 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-----TCHHHHHHHHHHHHHHTTC--------HHHHHHHHTTGG
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHcCC--------HHHHHHHHHHhh
Confidence 001234556778899999999999999999875 3544466666668899999 999999998554
Q ss_pred HCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860 247 NDGIEPD--IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 247 ~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
... .|. ...+..+-.++...|++++|++.|++... ....| ........-.++.+.|+.++|..+|+++... .
T Consensus 163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~ 238 (282)
T 4f3v_A 163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--H 238 (282)
T ss_dssp GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--S
T ss_pred ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 422 111 23677788889999999999999999875 33324 3446677778899999999999999999986 4
Q ss_pred CCHHHHHHH
Q 014860 323 PSSKSYNSL 331 (417)
Q Consensus 323 p~~~~~~~l 331 (417)
|+...+..|
T Consensus 239 P~~~~~~aL 247 (282)
T 4f3v_A 239 PEPKVAAAL 247 (282)
T ss_dssp CCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 554444433
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=1.4e-05 Score=63.34 Aligned_cols=95 Identities=7% Similarity=-0.088 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
..+..+...+.+.|++++|+..|+..... -+.+...|..+-.++...|+ +++|++.|++..+.. +-+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-p~~ 88 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQ--------YDLAIHSYSYGAVMD-IXE 88 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC-CCC
Confidence 33444444445555555555555544443 12234444444445555555 555555555544432 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
...+..+-.+|...|++++|.+.|+...
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555554443
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=4.3e-05 Score=69.60 Aligned_cols=134 Identities=13% Similarity=0.011 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-------------SFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
+...+..+-..|.+.|++++|...|++......-.++ ...|..+..+|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456777888899999999999999988763211110 588999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH-HHHHHHHHH
Q 014860 320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA-MKLLKELQN 388 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 388 (417)
. +.+...|..+..+|...|++++|...|++..+. .+-+...+..+...+.+.|+.++| ..+++.|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 237889999999999999999999999999886 234667888888999999999988 456666653
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.22 E-value=2.4e-05 Score=62.15 Aligned_cols=96 Identities=8% Similarity=-0.013 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
.+..+-..+.+.|++++|...|++...... -+...|..+-.+|...|++++|...|++..+.. +-+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 344444445555555555555555544321 134445555555555555555555555554431 123344444555555
Q ss_pred HcCCHhHHHHHHHHHHHC
Q 014860 372 RRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~ 389 (417)
..|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=9e-05 Score=57.80 Aligned_cols=107 Identities=10% Similarity=-0.055 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS----SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYR 364 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 364 (417)
+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566666667777777777777777776654 344 5666667777777777777777777766642 23456666
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHH
Q 014860 365 TVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYT 398 (417)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~ 398 (417)
.+..+|...|++++|.+.|++.......+...+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 6777777777777777777777765432444433
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=5.6e-05 Score=57.57 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI 370 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 370 (417)
..|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +-+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555566666777777777776666542 2245666667777777777777777777666642 23455666666677
Q ss_pred HHcCCHhHHHHHHHHHHHCC
Q 014860 371 CRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (417)
...|++++|...|++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 77777777777777666554
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.19 E-value=0.00012 Score=64.69 Aligned_cols=193 Identities=9% Similarity=-0.027 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI 250 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~ 250 (417)
.+...+..+...+.+.|++++|+..|++..+. .+.+...|..+...+...|+ +++|++.+++..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~- 68 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELD- 68 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSC-
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-
Confidence 45677888999999999999999999999885 13478889999999999999 999999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS 327 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 327 (417)
+-+...+..+..+|...|++++|.+.|+...+.. ....+...+..+ ...+ +. -+..........+...
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~------~~-~~~~~~~~~~~~~~~i 139 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAK------KK-RWNSIEERRIHQESEL 139 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHH------HH-HHHHHHHTCCCCCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHH------HH-HHHHHHHHHHhhhHHH
Confidence 4467888999999999999999999998875521 111111222222 1111 11 1222333334444444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHc-CCHhHHHHHHHHHHHC
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT-YRTVLDEICRR-GRAGEAMKLLKELQNK 389 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~m~~~ 389 (417)
...+ ..+ ..|+.++|.+.+++..+. .|+... ...+-..+.+. +.+++|.++|.+..+.
T Consensus 140 ~~~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 140 HSYL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4433 333 368889999888877654 555443 33443344444 6788999999887664
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=0.00015 Score=68.12 Aligned_cols=198 Identities=7% Similarity=-0.056 Sum_probs=132.2
Q ss_pred HHHccCChhHHHHHHHHHHcCCCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC
Q 014860 146 KLGAAKMYQEMDDVVNQMLATPSFCGT---------------EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS 210 (417)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~ 210 (417)
.+...|++++|.+.+..+.+......+ ...+..+...|.+.|++++|.+.+..+.+.. +..++
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~--~~~~~ 90 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM--MQFAK 90 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH--HTSCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHccc
Confidence 445566677777766666654332111 1246778899999999999999998876531 11122
Q ss_pred HH----HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860 211 IR----SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 211 ~~----~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
.. +.+.+-..+...|+ .++|.+++++... .+..+. ..++..+...|...|++++|..++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDS--------LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSC--------HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 21 22222233334566 8888888877653 333333 4577788999999999999999998875
Q ss_pred hhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860 282 VVYNY----LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK--GFV-P-S--SKSYNSLVSALALNGEVEETVKNLWEM 351 (417)
Q Consensus 282 ~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m 351 (417)
....- .-....+..++..|...|++++|..+++..... .+. | . ...+..+...+...|++++|...|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 42111 123567888899999999999999999877642 122 1 1 345667777788889999998888777
Q ss_pred HH
Q 014860 352 IE 353 (417)
Q Consensus 352 ~~ 353 (417)
.+
T Consensus 243 ~~ 244 (434)
T 4b4t_Q 243 FE 244 (434)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.17 E-value=5.4e-05 Score=59.85 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI 370 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 370 (417)
..+..+...+...|++++|...|++...... .+...|..+-.+|...|++++|...|++..+.. +-+...|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3444445555555666666666655554321 245555555555666666666666666555531 22334555555556
Q ss_pred HHcCCHhHHHHHHHHHHHC
Q 014860 371 CRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~ 389 (417)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666655543
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=5.2e-05 Score=69.01 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=100.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----------------HHH
Q 014860 150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----------------IRS 213 (417)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----------------~~~ 213 (417)
.+++++|.+.++...+... .+...+..+...|.+.|++++|+..|++..+. .|+ ...
T Consensus 126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSW-----LEYESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCCCCCSHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----hhccccCChHHHHHHHHHHHHH
Confidence 3444555544443332211 24678888999999999999999999999875 333 467
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (417)
|..+..++.+.|+ +++|+..|++..+.. +.+...|..+-.+|...|++++|...|++..+.. +.+...+
T Consensus 199 ~~nla~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~ 267 (336)
T 1p5q_A 199 HLNLAMCHLKLQA--------FSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAK 267 (336)
T ss_dssp HHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHH
T ss_pred HHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHH
Confidence 7777777777777 777877777777654 3456677777777777777777777777766521 2345566
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHH
Q 014860 294 DYLIHGLCAQGRTKNA-RELCDEMK 317 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A-~~l~~~m~ 317 (417)
..+...+.+.|+.++| ..+++.|.
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777776666 33444443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=0.00013 Score=54.19 Aligned_cols=99 Identities=8% Similarity=-0.017 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
...+..+...+...|++++|...++...+... .+...+..+...|.+.|++++|...+++..+. .+.+...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----KPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----CcccHHHHHH
Confidence 45566677777788888888888888877653 46777778888888888888888888887765 1335677788
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG 249 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g 249 (417)
+...+...|+ +++|.+.+++..+..
T Consensus 78 ~a~~~~~~~~--------~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 78 KAAALEFLNR--------FEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhh--------HHHHHHHHHHHHHcC
Confidence 8888888888 888888888877654
No 152
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.14 E-value=0.0012 Score=63.25 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
+++..+|+++... ++-+...|-..+.-+.+.|+ .++|.++|++....
T Consensus 196 ~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~--------~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 196 SRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQ--------KEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhC
Confidence 3456677777763 34557788888888888999 99999999988876
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00014 Score=68.20 Aligned_cols=201 Identities=8% Similarity=-0.059 Sum_probs=141.2
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCCC-------C------CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLECR-------P------SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~-------p------~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~ 246 (417)
.+.+.+.|++++|++.|..+.+....... . ...++..+...|...|+ +++|.+++.++.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------KDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHH
Confidence 45678899999999999999875211000 0 01347789999999999 999999998876
Q ss_pred HC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 247 ND-GIEPDIF----SLNSMIKGYILSNHVNDALRIFHQMGVV---YNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 247 ~~-g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
+. +-.++.. +.+.+-..+...|+.+.|.+++...... .+.. .-..++..+...|...|++++|..++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 42 1112221 2223333344568899999988876431 2222 235678889999999999999999999876
Q ss_pred HC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860 318 RK--GF--VP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK--QRP-V-D--FITYRTVLDEICRRGRAGEAMKLLKEL 386 (417)
Q Consensus 318 ~~--g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m 386 (417)
.. +. ++ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 43 21 22 2467889999999999999999999987654 121 1 1 235666667778899999999888776
Q ss_pred HH
Q 014860 387 QN 388 (417)
Q Consensus 387 ~~ 388 (417)
.+
T Consensus 243 ~~ 244 (434)
T 4b4t_Q 243 FE 244 (434)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=0.00011 Score=59.00 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
...+..+-..+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|+..|++..+... -+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3445555555666666666666666555421 22455555555666666666666666665555421 13555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 014860 334 ALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 334 ~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666655544
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.09 E-value=5.6e-06 Score=69.03 Aligned_cols=157 Identities=6% Similarity=-0.088 Sum_probs=85.7
Q ss_pred HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC---C-----------H
Q 014860 146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP---S-----------I 211 (417)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p---~-----------~ 211 (417)
.....|+++++.+.++.-..... .....+..+...+.+.|++++|+..|++..+.. .-.| . .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ---------CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHH
Confidence 34445555555555543222111 234567777888888999999999999888741 0011 1 2
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF 291 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 291 (417)
..|..+..++...|+ +++|+..+++..+.. +.+...+..+-.+|...|++++|.+.|+...+.. +-+..
T Consensus 89 ~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~ 157 (198)
T 2fbn_A 89 SCNLNLATCYNKNKD--------YPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHH
Confidence 566677777777777 777777777776653 3355666666677777777777777777665421 22445
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNAR-ELCDEMK 317 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~-~l~~~m~ 317 (417)
.+..+...+...++.+++. ..+..|.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555444 3344443
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.09 E-value=4.4e-05 Score=56.24 Aligned_cols=99 Identities=15% Similarity=-0.028 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 014860 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV--DFITYRTVLD 368 (417)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~ 368 (417)
..|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344555566666677777777776666542 2245666667777777777777777777766642 22 4566666767
Q ss_pred HHHHc-CCHhHHHHHHHHHHHCCC
Q 014860 369 EICRR-GRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 369 ~~~~~-g~~~~A~~~~~~m~~~~~ 391 (417)
.+... |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 77777 777777777777766543
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.08 E-value=8.3e-05 Score=58.15 Aligned_cols=96 Identities=8% Similarity=-0.078 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC 371 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 371 (417)
.+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|++..+.. +-+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344445555666666666666666655422 245556666666666666666666666666542 223445555666666
Q ss_pred HcCCHhHHHHHHHHHHHC
Q 014860 372 RRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~ 389 (417)
..|++++|.+.|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665554
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00012 Score=55.65 Aligned_cols=98 Identities=9% Similarity=0.022 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
...+......+.+.|++++|.+.++...+... .+...|..+..+|.+.|++++|+..|++..+.. +.+...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHH
Confidence 34566666777788888888888888877654 567788888888888888888888888887751 335677888
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
+..++...|+ +++|.+.|++..+.
T Consensus 78 lg~~~~~~~~--------~~~A~~~~~~al~~ 101 (126)
T 3upv_A 78 KATAQIAVKE--------YASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------HHHHHHHHHHHHHh
Confidence 8888888888 88888888877654
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=5.2e-05 Score=57.62 Aligned_cols=114 Identities=7% Similarity=0.035 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IR 212 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~ 212 (417)
...+..+...+...|++++|...++...+... .+...+..+...|...|++++|...|++..+... ...++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-ccchhHHHHHH
Confidence 45677788888999999999999999988754 5778899999999999999999999999877510 01122 67
Q ss_pred HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 263 (417)
+|..+...+...|+ +++|.+.|++..+.. |+......+-..
T Consensus 81 ~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEK--------YKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 88889999999999 999999999988753 565555544433
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.07 E-value=0.00013 Score=58.51 Aligned_cols=97 Identities=6% Similarity=-0.113 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP 252 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p 252 (417)
...+..+...|.+.|++++|+..|++..+. .+.+...|..+..+|...|+ +++|+..|++..+.. +-
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~ 77 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD-PK 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CC
Confidence 344455555555555555555555555543 12244555555555555555 555555555555443 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+...|..+-.+|...|++++|.+.|++..+
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555555555555555555555543
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=0.00017 Score=55.61 Aligned_cols=100 Identities=9% Similarity=-0.046 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014860 288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVL 367 (417)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 367 (417)
.+...|..+...+...|++++|...|++...... .+...|..+..+|...|++++|...+++..+.. +-+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3455566666666666666666666666555422 245566666666666666666666666666542 22455666666
Q ss_pred HHHHHcCCHhHHHHHHHHHHHC
Q 014860 368 DEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666665543
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=0.00025 Score=53.71 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ--RPVD----FITYRT 365 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 365 (417)
.|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+.. ..++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554432 2234445555555555555555555555554431 1111 344555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 366 VLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
+...|...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555553
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=0.00017 Score=55.55 Aligned_cols=101 Identities=9% Similarity=0.052 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860 134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS 213 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~ 213 (417)
+.+...+..+...+...|++++|...+....+... .+...+..+..+|...|++++|...|+...+.. +.+...
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~ 79 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKA 79 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----chhHHH
Confidence 45678888888899999999999999999888764 567888999999999999999999999988751 346788
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
|..+...+...|+ +++|...|++..+.
T Consensus 80 ~~~l~~~~~~~~~--------~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEMES--------YDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 8999999999999 99999999887753
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.00035 Score=54.34 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI 211 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~ 211 (417)
+...+..+...+...|++++|.+.++...+.. |+ ...+..+...|.+.|++++|+..|++..+. .+.+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~ 99 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----DGGDV 99 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TSCCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----CccCH
Confidence 34444444455555555555555555555433 22 344555555555555555555555555443 12234
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
..|..+...+...|+ +++|.+.|++..+
T Consensus 100 ~~~~~~a~~~~~~~~--------~~~A~~~~~~al~ 127 (148)
T 2dba_A 100 KALYRRSQALEKLGR--------LDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHHTC--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHH
Confidence 445555555555555 5555555555544
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.0057 Score=54.89 Aligned_cols=232 Identities=9% Similarity=-0.004 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860 155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK----------LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR 224 (417)
Q Consensus 155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~ 224 (417)
+|.++.+.+....+ .+..+|+.--..+...+. +++++.+++.+... .+-+..+|+.---.+...
T Consensus 48 eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 48 SVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp HHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHhcc
Confidence 45555555555443 333444433222222222 45666666666553 133555566555555555
Q ss_pred CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc
Q 014860 225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH-VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ 303 (417)
Q Consensus 225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 303 (417)
++.. +++++++++.+.+.. +-|-.+|+----.+...|. ++++++.++.+.+. . +-|...|+.....+.+.
T Consensus 122 ~~~~------~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 122 PEPN------WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp SSCC------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHH
T ss_pred Cccc------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHh
Confidence 5200 566666666666544 3355555555555555555 46666666666552 2 24555555544444433
Q ss_pred --------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCC
Q 014860 304 --------------GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN-----------GEVEETVKNLWEMIEKQRPV 358 (417)
Q Consensus 304 --------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p 358 (417)
+.++++++.+......... |...|+-+-..+.+. +.++++++.++++.+. .|
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~p 269 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EP 269 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cc
Confidence 3466777777776665322 666666554444444 4577888888888875 45
Q ss_pred CHH-HHHHHHH---HHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860 359 DFI-TYRTVLD---EICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL 404 (417)
Q Consensus 359 ~~~-~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 404 (417)
|.. .+.+++. +....|..+++...+.++++.+.-...-|.-+-+.+
T Consensus 270 d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 270 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 442 2222221 122356777888888888876643444555554443
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=0.00018 Score=59.71 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN--------------SFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
...+..+-..+.+.|++++|.+.|++......-.++ ...|..+..+|...|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777888999999999999988762222221 267888888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH-HHHHHHHHCC
Q 014860 320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM-KLLKELQNKN 390 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~ 390 (417)
. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+...+...++.+++. ..+..|...+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 3367888889999999999999999999988762 335667777777777777777766 5666665554
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=4.3e-05 Score=56.33 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC--CHHHHHH
Q 014860 139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP--SIRSYNI 216 (417)
Q Consensus 139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p--~~~~~~~ 216 (417)
.+..+...+...|++++|...++...+... .+...+..+...+.+.|++++|.+.|++..+.. +. +...|..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~ 81 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI----EDEYNKDVWAA 81 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----CCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----cccchHHHHHH
Confidence 344444555555555555555555554432 344555555556666666666666666655531 22 3555555
Q ss_pred HHHHHHhc-CCccchhhhhHHHHHHHHHHHHHC
Q 014860 217 LFTAFLSR-GKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 217 li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
+...+... |+ .++|.+.+++..+.
T Consensus 82 l~~~~~~~~~~--------~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGK--------EVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSC--------SHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCC--------HHHHHHHHHHHhhc
Confidence 55566666 65 56666666555543
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.00 E-value=0.00012 Score=56.01 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HH
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IR 212 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~ 212 (417)
..++..+...+.+.|++++|.+.|++.++..+ .+...|+.+..+|.+.|++++|++.|++..+... ...++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHHHHH
Confidence 34566788889999999999999999988764 6788999999999999999999999998876410 01111 24
Q ss_pred HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS 259 (417)
Q Consensus 213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 259 (417)
+|..+-..+...|+ +++|++.|++..+. .||..+...
T Consensus 85 ~~~~lg~~~~~~~~--------~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQND--------LSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHhh--CcCHHHHHH
Confidence 67778888999999 99999999998764 466555443
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.98 E-value=0.00013 Score=57.05 Aligned_cols=99 Identities=7% Similarity=-0.054 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...+..+...+.+.|++++|...++......+ .+...|..+..+|.+.|++++|+..|+...... +.+...|.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~ 90 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHH
Confidence 344555566677888899999988888887654 577888888888888999999999998888751 34567788
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
.+..++...|+ +++|.+.|+...+.
T Consensus 91 ~lg~~~~~~g~--------~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGD--------LDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHh
Confidence 88888888888 88888888887754
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.97 E-value=6.6e-05 Score=57.03 Aligned_cols=95 Identities=7% Similarity=-0.081 Sum_probs=83.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF 183 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 183 (417)
+..+...+.+.|++++|+..|+.+.+.. +.+...|..+..++...|++++|...+++..+..+ .+...+..+..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 4456667788999999999999997654 56889999999999999999999999999998765 5778999999999
Q ss_pred HHhCCHHHHHHHHHHhHhC
Q 014860 184 AEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 184 ~~~g~~~~a~~~~~~m~~~ 202 (417)
.+.|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999865
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=9.8e-05 Score=58.31 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SS 325 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 325 (417)
.++..+-..|...|++++|.+.+++..+...-..+ ...+..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888889999999999999887552111122 247788888999999999999999987653 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEK----QRPV-DFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
..+..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56788888999999999999999987754 2111 134677788889999999999999988765
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00013 Score=55.79 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CC----HHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GT----EALYNT 178 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~----~~~~~~ 178 (417)
+..+...+.+.|++++|++.|+.+.+.. +-+...|..+..++...|++++|.+.++..++..... .+ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4456778889999999999999987654 5678899999999999999999999999988753211 11 246778
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI 216 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~ 216 (417)
+..++...|++++|++.|++..+. .||......
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~-----~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE-----FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CcCHHHHHH
Confidence 888999999999999999998875 566655433
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=0.00013 Score=57.56 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 014860 211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PD----IFSLNSMIKGYILSNHVNDALRIFHQMGVVYN 285 (417)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 285 (417)
..++..+...+...|+ +++|.+.+++..+..-. .+ ..++..+...+...|++++|.+.++.......
T Consensus 9 ~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN--------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4567888889999999 99999999887753111 11 24778888899999999999999998754211
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 286 YLPN----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 286 ~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
-..+ ...+..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1112 456778888899999999999999887643 2111 1356788889999999999999999987653
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=1.8e-05 Score=59.63 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860 303 QGRTKNARELCDEMKRKGF--VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM 380 (417)
Q Consensus 303 ~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 380 (417)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665431 1234556666667777777777777777766652 224556666666777777777777
Q ss_pred HHHHHHHHCCC--CChhhHHHHHHHHHhh
Q 014860 381 KLLKELQNKNL--IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 381 ~~~~~m~~~~~--p~~~t~~~ll~~~~~~ 407 (417)
..+++...... ++...|...+..+.+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 77776665533 2333444444444433
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.88 E-value=0.0094 Score=53.50 Aligned_cols=221 Identities=10% Similarity=0.007 Sum_probs=157.5
Q ss_pred ccCC-hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860 113 LQED-PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKM----------YQEMDDVVNQMLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 113 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 181 (417)
..|. .++|++++..+.... +-+..+|+.--..+...+. ++++..+++.+....+ .+..+|+.-.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P--Kny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 3444 568999999997544 3455556654444433333 6788999999988665 68888988888
Q ss_pred HHHHhC--CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 182 FFAEAR--KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS 259 (417)
Q Consensus 182 ~~~~~g--~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 259 (417)
.+.+.| .+++++.+++.+.+. -+-|..+|+.-.-.+...|. ..+++++.++++.+.. +-|...|+-
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~-------~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAV-------APAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCc-------CHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 888888 489999999999986 25678899988888888776 1489999999999876 457777876
Q ss_pred HHHHHHhc--------------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHH
Q 014860 260 MIKGYILS--------------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ-----------GRTKNARELCD 314 (417)
Q Consensus 260 li~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~ 314 (417)
....+.+. +.++++++.++..... -+-|...|+.+-..+.+. +.++++++.++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 65555544 4578888888887752 245788888666666555 45789999999
Q ss_pred HHHHCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHc
Q 014860 315 EMKRKGFVPSSKSYNSLV-----SALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
++.+. .||. .|+.+- .+....|..+++...+.++.+-
T Consensus 263 elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 263 ELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 99875 4554 343222 1222457777888888888874
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.86 E-value=0.00022 Score=54.05 Aligned_cols=94 Identities=13% Similarity=-0.022 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
..+...+.+.|++++|...|++..+... -+...|..+-.++...|++++|...|++..+.. +-+...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3344556666666666666666665422 255666666666666677777777766666541 22445566666666667
Q ss_pred CCHhHHHHHHHHHHHC
Q 014860 374 GRAGEAMKLLKELQNK 389 (417)
Q Consensus 374 g~~~~A~~~~~~m~~~ 389 (417)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777766666554
No 177
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.84 E-value=0.012 Score=56.26 Aligned_cols=46 Identities=4% Similarity=-0.151 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 236 ETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 236 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+.+..+|+++.... +.+...|-..+.-+.+.|+.+.|..++++...
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44667777777643 44577788888888889999999999998776
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00059 Score=51.76 Aligned_cols=99 Identities=6% Similarity=-0.129 Sum_probs=78.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQP-RFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIY 181 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~ 181 (417)
+-.+...+...|++++|+..|+.+.+.. +.......+..+..++...|++++|...++...+..+..+. ...+..+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3345566778999999999999987643 11112267788888999999999999999999887542111 677888999
Q ss_pred HHHHhCCHHHHHHHHHHhHhC
Q 014860 182 FFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 182 ~~~~~g~~~~a~~~~~~m~~~ 202 (417)
+|.+.|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999886
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=0.0014 Score=49.63 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=51.2
Q ss_pred HHHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC---HHHHHHHHH
Q 014860 144 TRKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS---IRSYNILFT 219 (417)
Q Consensus 144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~---~~~~~~li~ 219 (417)
...+...|++++|.+.++.+.+.....+ ....+..+..+|.+.|++++|...|+...+.. +.+ ...+..+..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCcccHHHHHHHHH
Confidence 3445556666666666666655432101 01355555566666666666666666665531 112 444555666
Q ss_pred HHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 220 AFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
++...|+ .++|...|++..+.
T Consensus 85 ~~~~~g~--------~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGK--------NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHcCC--------HHHHHHHHHHHHHH
Confidence 6666666 66666666666554
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00065 Score=64.55 Aligned_cols=133 Identities=11% Similarity=0.000 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-------------SFSYDYLIHGLCAQGRTKNARELCDEMKRKG 320 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 320 (417)
...+..+-..|.+.|++++|...|++..+...-.++ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 456777888899999999999999988763211111 5789999999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHH-HHHHHHHC
Q 014860 321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV-DFITYRTVLDEICRRGRAGEAMK-LLKELQNK 389 (417)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~ 389 (417)
. -+...|..+-.+|...|++++|...|++..+. .| +...+..+..++.+.|+.+++.+ ++..|...
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 36889999999999999999999999999875 34 44577888888888888887764 56666543
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00066 Score=54.13 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
..|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++.....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 456666666777777777777777666642 3345566666667777777777777777666654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.71 E-value=0.00013 Score=69.83 Aligned_cols=118 Identities=11% Similarity=0.009 Sum_probs=74.2
Q ss_pred HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860 146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG 225 (417)
Q Consensus 146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g 225 (417)
.+.+.|++++|.+.+++..+... .+...|..+..+|.+.|++++|++.|++..+. -+.+..+|..+..+|...|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcC
Confidence 34456777777777777766543 45677777777777777777777777777764 1335667777777777777
Q ss_pred CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014860 226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG--YILSNHVNDALRIFH 278 (417)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 278 (417)
+ +++|++.|++..+.. +-+...+..+-.+ +.+.|++++|.+.++
T Consensus 89 ~--------~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 K--------FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp C--------HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred C--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7 777777777776643 1123334444333 666777777777776
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.68 E-value=0.00012 Score=55.10 Aligned_cols=86 Identities=9% Similarity=-0.020 Sum_probs=44.0
Q ss_pred cCChhHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCcc
Q 014860 150 AKMYQEMDDVVNQMLATPSF-CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNT 228 (417)
Q Consensus 150 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 228 (417)
.|++++|...+++..+.+.. +.+...+..+..+|.+.|++++|+..|++..+. .+-+...+..+..++...|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~-- 76 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ----FPNHQALRVFYAMVLYNLGR-- 76 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC--
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHcCC--
Confidence 45555666666666554310 023445555555566666666666666665553 12234555555555566665
Q ss_pred chhhhhHHHHHHHHHHHHH
Q 014860 229 YINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 229 ~~~~~~~~~a~~~~~~m~~ 247 (417)
+++|++.|++..+
T Consensus 77 ------~~~A~~~~~~al~ 89 (117)
T 3k9i_A 77 ------YEQGVELLLKIIA 89 (117)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHH
Confidence 5666665555544
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.64 E-value=0.00029 Score=67.37 Aligned_cols=121 Identities=10% Similarity=-0.057 Sum_probs=94.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN 258 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 258 (417)
+...+.+.|++++|++.|++..+. .+.+..+|..+..++.+.|+ +++|++.+++..+.. +-+..++.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-p~~~~~~~ 78 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGYY 78 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSC-TTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344566789999999999999885 24458899999999999999 999999999999875 44678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG--LCAQGRTKNARELCD 314 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~ 314 (417)
.+-.+|...|++++|.+.|++..+...-.+. .+..+..+ +.+.|++++|.+.++
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999998774322233 44444444 888899999999988
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.62 E-value=0.00096 Score=63.38 Aligned_cols=125 Identities=9% Similarity=-0.043 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-------------HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC
Q 014860 137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-------------EALYNTIIYFFAEARKLSRAVYVFKYMKNSR 203 (417)
Q Consensus 137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 203 (417)
...|..+...+.+.|++++|...|++..+.....++ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 445666667777788888888888877765432111 466667777777777777777777776664
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860 204 NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDAL 274 (417)
Q Consensus 204 ~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 274 (417)
.+.+...|..+-.+|...|+ +++|...|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 347 ---~p~~~~a~~~~g~a~~~~g~--------~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 ---DSANEKGLYRRGEAQLLMNE--------FESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ---STTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 13356667777777777777 777777777766543 223455666666666666665554
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.00077 Score=62.09 Aligned_cols=121 Identities=7% Similarity=-0.131 Sum_probs=64.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHcCC--------------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCC
Q 014860 140 YHIMTRKLGAAKMYQEMDDVVNQMLATP--------------SFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNL 205 (417)
Q Consensus 140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 205 (417)
+..+...+.+.|++++|.+.+++..+.- ..+.+..+|..+..+|.+.|++++|+..+++..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--- 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--- 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---
Confidence 4455556666777777777666665510 00023445555556666666666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860 206 ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDA 273 (417)
Q Consensus 206 g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 273 (417)
-+.+...|..+..+|...|+ +++|++.|++..+.. +-+...+..+-..+.+.++.+++
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~--------~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKE--------YDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 12245555556666666666 666666666555442 12344444444444444444433
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.59 E-value=0.00036 Score=66.58 Aligned_cols=129 Identities=8% Similarity=-0.056 Sum_probs=97.2
Q ss_pred HhccCChhHHHHHHHHhhcC--CCCC----CCHHHHHHHHHHHHccCChhHHHHHHHHHHcC-----CCCCCC-HHHHHH
Q 014860 111 MTLQEDPLVCLELFNWASKQ--PRFR----HDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT-----PSFCGT-EALYNT 178 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~~ 178 (417)
+..+|++++|+.+++...+. .-+. ....+++.+..+|...|++++|..++++.++. |...|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887542 1111 24577889999999999999999999888763 333233 567999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN 247 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~ 247 (417)
|...|...|++++|+.+|++..+.. +...+....+.+.+-.++...+. +++|+.+|..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~--------~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM--------FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 9999999999999999999876541 11222234456677777888888 9999999999875
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.53 E-value=0.00084 Score=61.81 Aligned_cols=117 Identities=7% Similarity=-0.095 Sum_probs=95.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCC--------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQP--------------RFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 169 (417)
+..+...+.+.+++++|++.|+.+.+.. .-+.+...|..+..++.+.|++++|.+.++...+...
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 5566777789999999999999887510 0123567888888999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
.+...+..+..+|.+.|++++|++.|++..+.. +.+...+..+...+...++
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998751 3356677777777777766
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.52 E-value=0.0017 Score=51.68 Aligned_cols=99 Identities=13% Similarity=0.064 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHcC--------CC--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 138 STYHIMTRKLGAAKMYQEMDDVVNQMLAT--------PS--------FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
..+......+.+.|++++|...|....+. .. .+.+...|..+..+|.+.|++++|+..++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34444555666666666666666666554 00 002346788888888899999999999888887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 202 SRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 202 ~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
.. +.+...|..+..++...|+ +++|...|++..+.
T Consensus 92 ~~----p~~~~a~~~~g~~~~~~g~--------~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE----ETNEKALFRRAKARIAAWK--------LDEAEEDLKLLLRN 126 (162)
T ss_dssp HS----TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred cC----CcchHHHHHHHHHHHHHhc--------HHHHHHHHHHHHhc
Confidence 51 4457788888888999998 89999988888776
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.45 E-value=0.00092 Score=63.78 Aligned_cols=141 Identities=10% Similarity=-0.001 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHH----------HHHccCChhHHHHHHHHHHcC-----CCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 014860 134 RHDASTYHIMTR----------KLGAAKMYQEMDDVVNQMLAT-----PSFCG-TEALYNTIIYFFAEARKLSRAVYVFK 197 (417)
Q Consensus 134 ~~~~~~~~~li~----------~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 197 (417)
.++..++..++. .+...|++++|+.++++..+. |...| ...+++.|..+|...|++++|..+++
T Consensus 296 ~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 296 KPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 456665554433 355889999999999888763 22112 35689999999999999999999999
Q ss_pred HhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHh
Q 014860 198 YMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGI-EPD-IFSLNSMIKGYIL 266 (417)
Q Consensus 198 ~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~li~~~~~ 266 (417)
+..+.. +...+-...+++.|...|...|+ +++|+.++++..+ .|- .|+ ..+.+.+-.++..
T Consensus 376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~--------~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH--------IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 876541 11122235679999999999999 9999988887664 232 232 2344556666677
Q ss_pred cCCHHHHHHHHHHhhh
Q 014860 267 SNHVNDALRIFHQMGV 282 (417)
Q Consensus 267 ~g~~~~a~~~~~~m~~ 282 (417)
.+++++|+.++..+++
T Consensus 448 ~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 448 LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888888765
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.42 E-value=0.0026 Score=49.27 Aligned_cols=109 Identities=6% Similarity=-0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNAR 310 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 310 (417)
.++|++.|++..+.| .++.. +-..|...+.+++|.+.|+...+ . -+...+..|-..|.. .+++++|.
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 566666666666655 23322 44444444555556666655554 1 344445555555554 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 014860 311 ELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQ 355 (417)
Q Consensus 311 ~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 355 (417)
++|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 44445555555555 455555555555555543
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.36 E-value=0.016 Score=44.65 Aligned_cols=114 Identities=8% Similarity=-0.069 Sum_probs=95.8
Q ss_pred cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 014860 267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVE 342 (417)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 342 (417)
.++.++|.+.|+...+ .| .+... |-..|...+..++|.++|++..+.| +...+..|-..|.. .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 3467899999999887 45 24433 6666777788999999999999876 77888889999988 89999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCC
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICR----RGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p 392 (417)
+|.++|++..+.| +...+..|-..|.. .++.++|.+.|++-.+.|.+
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999999886 67788888888988 89999999999999998853
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00025 Score=52.15 Aligned_cols=91 Identities=12% Similarity=-0.023 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD-------FI 361 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 361 (417)
+...|..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|.+.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34456666666777777777777777766542 225666667777777777777777777776654 333 33
Q ss_pred HHHHHHHHHHHcCCHhHHHHH
Q 014860 362 TYRTVLDEICRRGRAGEAMKL 382 (417)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~ 382 (417)
.+..+..++...|+.++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 444444555555555544443
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.32 E-value=0.0027 Score=47.08 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 309 ARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 309 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
|...|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444332 1234455555555555555555555555555431 22344555555555555555555555555544
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.30 E-value=0.00086 Score=60.93 Aligned_cols=148 Identities=10% Similarity=-0.036 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860 173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP 252 (417)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p 252 (417)
...+..+...+.+.|++++|+..|++.... .|+... +...++ .+++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~-------~~~~~~--------~~~~~~~l~--------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFM-------FQLYGK--------YQDMALAVK--------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHH-------HTCCHH--------HHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchh-------hhhccc--------HHHHHHHHH---------
Confidence 345667777888889999999999998764 344331 122222 333332221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-SSKSYNSL 331 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l 331 (417)
...|..+-.+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+. .| +...+..+
T Consensus 230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L 304 (338)
T 2if4_A 230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRREL 304 (338)
T ss_dssp -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 1256666667777777777777777665521 235666777777777777777777777776543 23 23334444
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHc
Q 014860 332 VSA-LALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 332 i~~-~~~~g~~~~A~~~~~~m~~~ 354 (417)
... ....+..+++..+|..|...
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 333 22345566666777766654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.28 E-value=0.0024 Score=47.40 Aligned_cols=80 Identities=5% Similarity=-0.063 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014860 119 VCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKY 198 (417)
Q Consensus 119 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 198 (417)
.|++.|+.+.+.. +.+...+..+...+...|++++|...++...+... .+...|..+..+|.+.|++++|...|++
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5677788776544 56788999999999999999999999999988764 5678899999999999999999999998
Q ss_pred hHhC
Q 014860 199 MKNS 202 (417)
Q Consensus 199 m~~~ 202 (417)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0026 Score=46.00 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
...+..+..+|...|++++|...|++..+.. +-+...|..+..+|...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555555555555554431 11233444455555555555555555555443
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.24 E-value=0.0011 Score=60.33 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860 138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217 (417)
Q Consensus 138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l 217 (417)
..+..+...+.+.|++++|...|....+.. |+... +...|+.+++... +. ...|..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~---l~----------~~~~~nl 236 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALA---VK----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHH---HH----------THHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHH---HH----------HHHHHHH
Confidence 344555566667788888888877776643 22221 1111222222111 11 1245555
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHH
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYL 296 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~l 296 (417)
..+|.+.|+ +++|+..+++..+.. +-+...|..+-.+|...|++++|.+.|+...+. .| +...+..+
T Consensus 237 a~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L 304 (338)
T 2if4_A 237 AACLIKLKR--------YDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRREL 304 (338)
T ss_dssp HHHHHTTTC--------CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHH
Confidence 555556665 566666665555442 224455555555666666666666666555431 12 22233333
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHH
Q 014860 297 IHG-LCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 297 i~~-~~~~g~~~~A~~l~~~m~~ 318 (417)
... ....+..+++..+|..|..
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 332 1223445555556655554
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.19 E-value=0.043 Score=53.44 Aligned_cols=171 Identities=9% Similarity=-0.031 Sum_probs=115.4
Q ss_pred ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860 152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK----------LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF 221 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~ 221 (417)
.-++|.+.++.+....+ .+..+|+.--.++.+.|+ ++++++.++.+.+. -+-+..+|+.---.+
T Consensus 44 ~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 44 LDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 34566777777776654 455666666566666665 77888888887775 234567777777777
Q ss_pred HhcC--CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860 222 LSRG--KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN-HVNDALRIFHQMGVVYNYLPNSFSYDYLIH 298 (417)
Q Consensus 222 ~~~g--~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 298 (417)
.+.+ + ++++++.++++.+.. +-+-.+|+---..+.+.| .++++.+.++++.+ . -.-|...|+....
T Consensus 118 ~~l~~~~--------~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-~-~p~n~saW~~r~~ 186 (567)
T 1dce_A 118 SRLPEPN--------WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-R-NFSNYSSWHYRSC 186 (567)
T ss_dssp HTCSSCC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-T-TCCCHHHHHHHHH
T ss_pred HHccccc--------HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH-H-CCCCccHHHHHHH
Confidence 7777 5 688888888887765 346677777666666777 77778777777765 2 2346667776666
Q ss_pred HHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 299 GLCAQ--------------GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 299 ~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 340 (417)
.+.+. +.++++.+.+.+....... |...|+-+-..+.+.++
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 65553 4568888888887765332 67778777777766665
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.17 E-value=0.008 Score=47.45 Aligned_cols=95 Identities=9% Similarity=-0.134 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC--------H-----HHHHHHHHHHHhcCCccchhhhhHHHHHH
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS--------I-----RSYNILFTAFLSRGKNTYINHVYMETIRC 240 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~~~~~~~~~a~~ 240 (417)
..+......+.+.|++++|+..|++..+. .|+ . ..|+.+-.++.+.|+ +++|+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~ 78 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI-----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHH
Confidence 44556677788999999999999998875 333 2 389999999999999 999999
Q ss_pred HHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHhh
Q 014860 241 LFKQMVND-----GIEPD-IFSL----NSMIKGYILSNHVNDALRIFHQMG 281 (417)
Q Consensus 241 ~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 281 (417)
.+++..+. .+.|+ ...| ...-.++...|++++|+..|+...
T Consensus 79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 99888764 11333 3455 556666666777777776666653
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.14 E-value=0.0075 Score=47.64 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-----CH-----HHHHHHHHHHHHhCCHHHHHHHHHHhHhC--CCCCC
Q 014860 140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-----TE-----ALYNTIIYFFAEARKLSRAVYVFKYMKNS--RNLEC 207 (417)
Q Consensus 140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~g~ 207 (417)
+......+...|++++|.+.|+..++..+..| +. ..|+.+..++.+.|++++|+..|++..+. +...+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34455566778888888888888877653211 23 38999999999999999999999988863 00011
Q ss_pred CCC-HHHH----HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 014860 208 RPS-IRSY----NILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGIEPDIFSLNSM 260 (417)
Q Consensus 208 ~p~-~~~~----~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 260 (417)
.|+ ...| ...-.++...|+ +++|+..|++..+ .|+.+........
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr--------~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCC--------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 454 5678 899999999999 9999999998875 4555554444333
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.12 E-value=0.0092 Score=41.59 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
.+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444444444444444444321 11334444444444444555555544444444
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.10 E-value=0.0061 Score=42.56 Aligned_cols=83 Identities=8% Similarity=0.025 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
+...+..+...+...|++++|...++...+... .+...+..+...|.+.|++++|...|++..+.. +.+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCHHHHH
Confidence 356677777788888999999999988887654 567788888889999999999999999888751 33566666
Q ss_pred HHHHHHHhc
Q 014860 216 ILFTAFLSR 224 (417)
Q Consensus 216 ~li~~~~~~ 224 (417)
.+-..+...
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666555543
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.08 E-value=0.051 Score=52.91 Aligned_cols=167 Identities=10% Similarity=-0.043 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH----------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG 304 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 304 (417)
.++|++.++++.+.. +-+..+|+.--.++...|+ ++++.+.++.+.+. -+-+...|+.---.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 678899999998865 3345667665555555666 89999999999863 2467888988888888999
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------
Q 014860 305 --RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG-EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR-------- 373 (417)
Q Consensus 305 --~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------- 373 (417)
+++++.+.++++.+...+ |..+|+.--..+.+.| ..+++++.++++.+.. .-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999987655 8889988888888889 8999999999998763 45777888777776663
Q ss_pred ------CCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860 374 ------GRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406 (417)
Q Consensus 374 ------g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 406 (417)
+.++++++.+++......-+...|.-+--.+.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 557899999999888765477777765554443
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0054 Score=44.72 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
+...+..+...+...|++++|.+.++...+... .+...+..+..+|.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455667777778888888888888888877654 46777888888888888888888888888764
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.97 E-value=0.0048 Score=44.57 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566667777777777777777777777665322 455677777777777777777777776654
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.95 E-value=0.014 Score=59.42 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 253 DIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
+...|..+-..+.+.|+++.|++.|..+..
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 344555555555555555555555555543
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.91 E-value=0.0022 Score=50.60 Aligned_cols=99 Identities=12% Similarity=-0.041 Sum_probs=80.4
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCh----------hHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMY----------QEMDDVVNQMLATPSFCGTEALYNTIIYF 182 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 182 (417)
+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.++..+ .+...|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence 4456889999999887655 56889999888888887765 599999999999875 578899999999
Q ss_pred HHHhC-----------CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH
Q 014860 183 FAEAR-----------KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTA 220 (417)
Q Consensus 183 ~~~~g-----------~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~ 220 (417)
|...| ++++|++.|++..+. .|+...|...+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence 99875 899999999999986 7776666554443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.77 E-value=0.039 Score=56.09 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=92.3
Q ss_pred HhccCChhHHHH-HHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860 111 MTLQEDPLVCLE-LFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL 189 (417)
Q Consensus 111 l~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 189 (417)
....++++.|.+ ++..+ ++......++..+.+.|..++|.++.+. +. .-.......|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPD--------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCC--------HH-----HHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCC--------cc-----hheehhhhcCCH
Confidence 345778888877 44221 2133347777778888888888766521 11 113345678888
Q ss_pred HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH 269 (417)
Q Consensus 190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 269 (417)
+.|.++.+.+. +...|..+...+.+.++ ++.|++.|..+.+ |..+...|...|+
T Consensus 669 ~~A~~~~~~~~---------~~~~W~~la~~al~~~~--------~~~A~~~y~~~~d---------~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 669 TLARDLLTDES---------AEMKWRALGDASLQRFN--------FKLAIEAFTNAHD---------LESLFLLHSSFNN 722 (814)
T ss_dssp HHHHHHHTTCC---------CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTC---------HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhC---------cHhHHHHHHHHHHHcCC--------HHHHHHHHHHccC---------hhhhHHHHHHcCC
Confidence 88888765442 56788888888888888 8888888887653 3344455555666
Q ss_pred HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
.+...++.+.... .| -++....+|.+.|++++|.+++.++.
T Consensus 723 ~~~~~~~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 723 KEGLVTLAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5555554444433 11 12333334455555555555555443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.076 Score=48.04 Aligned_cols=140 Identities=9% Similarity=0.006 Sum_probs=95.7
Q ss_pred CCHHHHHHHHh--cc---CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---ccC-----ChhHHHHHHHHHHcCCC
Q 014860 102 FNNEELCNVMT--LQ---EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG---AAK-----MYQEMDDVVNQMLATPS 168 (417)
Q Consensus 102 ~~~~~ll~~l~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~-----~~~~a~~~~~~m~~~~~ 168 (417)
-.|...+++.. .. .+..+|+.+|+.+.+.. +-....|..+.-++. ..+ ........+........
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 36777776653 22 33578999999997654 334455554433332 111 11111122222222233
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 169 FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 169 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
.+.+..+|..+...+...|++++|...++++... .|+...|..+-..+.-.|+ .++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----n~s~~a~~llG~~~~~~G~--------~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----EMSWLNYVLLGKVYEMKGM--------NREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhc
Confidence 3378889998888888889999999999999986 4788888888888999999 99999999998876
Q ss_pred CCCCCHHHHH
Q 014860 249 GIEPDIFSLN 258 (417)
Q Consensus 249 g~~p~~~~~~ 258 (417)
.|...||.
T Consensus 340 --~P~~~t~~ 347 (372)
T 3ly7_A 340 --RPGANTLY 347 (372)
T ss_dssp --SCSHHHHH
T ss_pred --CCCcChHH
Confidence 47776664
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.017 Score=54.11 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHH
Q 014860 302 AQGRTKNARELCDEMKRK---GFVP---S-SKSYNSLVSALALNGEVEETVKNLWEMIEK-----Q-RPVDF-ITYRTVL 367 (417)
Q Consensus 302 ~~g~~~~A~~l~~~m~~~---g~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~li 367 (417)
..|++++|+.++++..+. -+.| + ..+++.|..+|...|++++|+.++++..+- | -.|++ .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999886642 1222 2 467899999999999999999999987653 2 23444 4788899
Q ss_pred HHHHHcCCHhHHHHHHHHHHH
Q 014860 368 DEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~ 388 (417)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988755
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.51 E-value=0.017 Score=54.13 Aligned_cols=93 Identities=17% Similarity=0.069 Sum_probs=72.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-H
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKG---FVPS----SKSYNSLVSALALNGEVEETVKNLWEMIEK-----Q-RPVDF-I 361 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~ 361 (417)
.+..+.+.|++++|+.++++..+.. ..|+ ..+++.|...|...|++++|+.++++..+- | ..|+. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555778899999999999887541 2222 467899999999999999999999987753 2 23333 4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 362 TYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788899999999999999999988754
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.50 E-value=0.0093 Score=46.99 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=80.2
Q ss_pred HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHhHhCCCCCCCC-CHHHHHH
Q 014860 148 GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL----------SRAVYVFKYMKNSRNLECRP-SIRSYNI 216 (417)
Q Consensus 148 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~g~~p-~~~~~~~ 216 (417)
.+.+.+++|.+.++...+..+ .+...|..+..++.+.+++ ++|+..|++..+. .| +..+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHH
Confidence 456778999999999988775 6888999888899888765 5999999999986 44 5788999
Q ss_pred HHHHHHhcC-----------CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 217 LFTAFLSRG-----------KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 217 li~~~~~~g-----------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 263 (417)
+-.+|...| + +++|++.|++..+. .|+...|..-+..
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~--------~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHN--------FDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhcc--------HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999998774 6 99999999999886 5776666555543
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.26 Score=39.38 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=71.7
Q ss_pred HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTC
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCC
Confidence 34567777777666554 3456777777777777777777777776654 3444445555666
Q ss_pred ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT 306 (417)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 306 (417)
.++..++-+.....| -++.-...+.-.|+++++.++|.+..+ |.--+......|..
T Consensus 76 --------~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----------~~eA~~~A~t~g~~ 131 (177)
T 3mkq_B 76 --------VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----------LPLAYAVAKANGDE 131 (177)
T ss_dssp --------HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----------HHHHHHHHHHTTCH
T ss_pred --------HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----------hHHHHHHHHHcCcH
Confidence 555554444444443 244445555566777777777665543 11111122234555
Q ss_pred HHHHHHHHHH
Q 014860 307 KNARELCDEM 316 (417)
Q Consensus 307 ~~A~~l~~~m 316 (417)
+.|.++.+++
T Consensus 132 ~~a~~~~~~~ 141 (177)
T 3mkq_B 132 AAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.38 E-value=0.21 Score=37.73 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.++..++..+.... -+..-||-+|--....-+-+-..++++.+.+-+.+.+ +|+......-+-
T Consensus 23 v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrVi~C~~ 85 (172)
T 1wy6_A 23 IDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSVVECGV 85 (172)
T ss_dssp HHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHHHHHHH
Confidence 77777787777753 3455566666556666667777777777765333322 233333322222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860 315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI 392 (417)
Q Consensus 315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 392 (417)
.+- .+...++..+..+...|.-|.-.+++.++.. ..+|++...-.+..||.+.|+..+|.+++.+.-+.|++
T Consensus 86 ~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 221 1334556666777777777777777777543 34567777777777888888888888888887777763
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.29 E-value=0.088 Score=47.61 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHh--cCCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC--CHHHH---HHH
Q 014860 208 RPSIRSYNILFTAFLS--RGKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYIL---SN--HVNDA---LRI 276 (417)
Q Consensus 208 ~p~~~~~~~li~~~~~--~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~g--~~~~a---~~~ 276 (417)
+.+...|...+++... .++ .....+|..+|++..+. .|+ ...|..+.-+|.- .+ .-... .+.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~-----~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGD-----DKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 4466777777766543 233 11278999999999986 454 4455544444431 00 00111 111
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 014860 277 FHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQR 356 (417)
Q Consensus 277 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 356 (417)
+...........+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|++....
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-- 339 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL-- 339 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 11111101223455666666555555677777777777666653 56666666666666677777777777666654
Q ss_pred CCCHHHH
Q 014860 357 PVDFITY 363 (417)
Q Consensus 357 ~p~~~~~ 363 (417)
.|...||
T Consensus 340 ~P~~~t~ 346 (372)
T 3ly7_A 340 RPGANTL 346 (372)
T ss_dssp SCSHHHH
T ss_pred CCCcChH
Confidence 4555554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.02 E-value=0.06 Score=50.36 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=71.0
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCCCC----CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CC-
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLECRP----SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DG- 249 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g- 249 (417)
+..+.+.|++++|+.++++..+....-+.| ...+++.+...|...|+ +++|+.++++..+ .|
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--------~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--------LEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhHHHHcCC
Confidence 455667899999999999998653212222 35679999999999999 9999999988764 22
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 250 IEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 250 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
-.|+ ..+++.|-..|...|++++|+.++++..+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1233 35677888888888888888888877643
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.52 Score=37.62 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=97.2
Q ss_pred HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI 297 (417)
Q Consensus 218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 297 (417)
.......|+ ++.|.++.+++ -+...|..|-+.....|+++-|++.|..... +..+.
T Consensus 12 F~LAL~lg~--------l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~ 67 (177)
T 3mkq_B 12 FDLALEYGN--------LDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLS 67 (177)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHH
T ss_pred HHHHHhcCC--------HHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHH
Confidence 455677888 99999988776 3688999999999999999999999999976 56677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860 298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG 377 (417)
Q Consensus 298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 377 (417)
-.|.-.|+.+...++-+.....| -++.-..++...|+++++.++|.+... .|... -.....|..+
T Consensus 68 ~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~ 132 (177)
T 3mkq_B 68 FLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEA 132 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHH
Confidence 77888899888777766666554 256666777888999999999854332 22111 1122367788
Q ss_pred HHHHHHHHH
Q 014860 378 EAMKLLKEL 386 (417)
Q Consensus 378 ~A~~~~~~m 386 (417)
.|.++.+++
T Consensus 133 ~a~~~~~~~ 141 (177)
T 3mkq_B 133 AASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888776
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.83 E-value=0.044 Score=51.30 Aligned_cols=89 Identities=4% Similarity=-0.079 Sum_probs=66.3
Q ss_pred hCCHHHHHHHHHHhHhCCCCCCCC----CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CC-CCCC-H
Q 014860 186 ARKLSRAVYVFKYMKNSRNLECRP----SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DG-IEPD-I 254 (417)
Q Consensus 186 ~g~~~~a~~~~~~m~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~ 254 (417)
.|++++|+.++++..+....-+-| ...+++.+...|...|+ +++|+.++++..+ .| -.|+ .
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------WEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 478999999998876642111222 25779999999999999 9999999998764 22 1333 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 255 FSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
.+++.|-..|...|++++|+.++++..+
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5678888888888998888888877644
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.73 E-value=0.1 Score=36.85 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 297 IHGLCAQGRTKNARELCDEMKRKGFVPSSK-SYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
...+...|++++|...+++..+... -+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445566677777777766665421 1445 6666666666677777777777666654
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.69 E-value=0.044 Score=38.86 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 263 GYILSNHVNDALRIFHQMGVVYNYLPNSF-SYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
.+.+.|++++|.+.|+...+.. +.+.. .|..+..+|...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555554444311 12233 444444444455555555555554444
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.60 E-value=0.51 Score=35.65 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014860 260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF 321 (417)
Q Consensus 260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 321 (417)
-++.....|+-++-.+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33344444444444444444321 2234444444444445555555555555444444443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.48 E-value=0.11 Score=36.79 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 134 RHDASTYHIMTRKLGAAKM---YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
+.|...+..+..++...++ .++|..++++..+..+ .+......+...+.+.|++++|+..|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567777777777754443 7889999999888775 57788888888899999999999999998876
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.38 E-value=1.1 Score=38.84 Aligned_cols=117 Identities=11% Similarity=-0.024 Sum_probs=83.2
Q ss_pred CHHHHHHHHHH-HHhc--CCccchhhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 014860 210 SIRSYNILFTA-FLSR--GKNTYINHVYMETIRCLFKQMVNDGIEPD---IFSLNSMIKGYILS-----NHVNDALRIFH 278 (417)
Q Consensus 210 ~~~~~~~li~~-~~~~--g~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~ 278 (417)
....|..++.+ +... |+.... .....|..++++..+. .|+ -..|..+...|.+. |+.++|.+.|+
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al--~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALP--DTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCH--HHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHH--HhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 45567776664 4443 332222 2267888888888776 455 56888888888884 99999999999
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 014860 279 QMGVVYNYLPNSFSYDYLIHGLCAQ-GRTKNARELCDEMKRKGFV--PSSKSYNSL 331 (417)
Q Consensus 279 ~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~--p~~~~~~~l 331 (417)
+..+. +-.-+..++......+++. |+.+++.+.+++....... |+....|.+
T Consensus 229 rAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 229 HLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 98773 2112477788888888885 9999999999999988766 776555544
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.20 E-value=0.26 Score=38.29 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHH
Q 014860 307 KNARELCDEMKRKGFVPSSKSYNSLVSALALNG---EVEETVKNLWEMIEKQRPV--DFITYRTVLDEICRRGRAGEAMK 381 (417)
Q Consensus 307 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~ 381 (417)
..+.+-|.+..+.|. ++..+.-.+.-++++.. +++++..+|++..+.. .| +...+-.|--+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555443 45555555666666666 4556666666666653 13 12333344456667777777777
Q ss_pred HHHHHHHCCC
Q 014860 382 LLKELQNKNL 391 (417)
Q Consensus 382 ~~~~m~~~~~ 391 (417)
.++.+.+...
T Consensus 93 y~~~lL~ieP 102 (152)
T 1pc2_A 93 YVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHhcCC
Confidence 7777666543
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.17 E-value=0.35 Score=34.07 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860 341 VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN 390 (417)
Q Consensus 341 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 390 (417)
.++|..++++..+. -+-+......+-..+.+.|++++|...|+++.+..
T Consensus 25 ~~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34455555444443 11223334444444445555555555555554443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.83 E-value=0.17 Score=36.58 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATP-----SFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
.+...+-.+...+.+.|+++.|...++...+.. .......++..+..+|.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 466677778888889999999999888877642 11156788899999999999999999999999875
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.76 E-value=0.43 Score=34.33 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRK------GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+..-+-.|-..+.+.|+++.|..+|+...+. +-.+....+..|..+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444555666666667777777666665542 01224455666666666666666666666666653
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.81 E-value=0.42 Score=41.51 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHhHhCCCCCCCC--CHHHHHHHHHHHHhc
Q 014860 152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA-----RKLSRAVYVFKYMKNSRNLECRP--SIRSYNILFTAFLSR 224 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~g~~p--~~~~~~~li~~~~~~ 224 (417)
....|...+++..+....-.+...|..+...|.+. |+.++|.+.|++..+. .| +..++......++..
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-----nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-----CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-----CCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-----CCCCCchHHHHHHHHHHHh
Confidence 45667778888888763222467899999999994 9999999999999986 55 377788888888884
Q ss_pred -CCccchhhhhHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860 225 -GKNTYINHVYMETIRCLFKQMVNDGIE--PDIFSLNSMIKGYILSNHVNDALRIFHQM 280 (417)
Q Consensus 225 -g~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (417)
|+ .+++.+.+++..+.... |+....|.+-. ++|..++++.
T Consensus 253 ~gd--------~~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~ 295 (301)
T 3u64_A 253 LNN--------RAGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHV 295 (301)
T ss_dssp TTC--------HHHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTH
T ss_pred cCC--------HHHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHh
Confidence 88 99999999999988766 66655554432 4555555444
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.62 E-value=6.6 Score=36.62 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhh-CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVV-YNYLPN---SFSYDYLIHGLCAQGRTKNARELCDEMKR----KGFVPS--SK 326 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~ 326 (417)
...|...|...|++.+|.+++..+... .+.... ...+...+..|...+++..|..+++.+.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345778889999999999999998542 222222 45677788889999999999999988753 222233 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHHHcCCHhHHHHHHHHHHH-CCCCChhhHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTV----LDEICRRGRAGEAMKLLKELQN-KNLIDGYTYTKL 400 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~-~~~p~~~t~~~l 400 (417)
.|...+..+...+++.+|...|.+..+. ...-|...+..+ +....-.+...+--.++..... ...++...|..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5677888888999999999888887653 112233322222 2222222222222233333222 223456677777
Q ss_pred HHHHHh
Q 014860 401 LDVLED 406 (417)
Q Consensus 401 l~~~~~ 406 (417)
++++..
T Consensus 300 ~k~f~~ 305 (445)
T 4b4t_P 300 VKLFTT 305 (445)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.43 E-value=1.7 Score=33.72 Aligned_cols=80 Identities=5% Similarity=0.037 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHhHhCCCCCCCC--CHHHHHHHHHHHHhcCCccc
Q 014860 155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR---KLSRAVYVFKYMKNSRNLECRP--SIRSYNILFTAFLSRGKNTY 229 (417)
Q Consensus 155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~ 229 (417)
.+++-|....+.+. ++..+.-.+.-++++.+ ++++++.+|++..+. + .| ....+-.+--+|.+.|+
T Consensus 16 ~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~---~-~p~~~rd~lY~LAv~~~kl~~--- 86 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK---G-SKEEQRDYVFYLAVGNYRLKE--- 86 (152)
T ss_dssp HHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---S-CHHHHHHHHHHHHHHHHHTSC---
T ss_pred HHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C-CccchHHHHHHHHHHHHHccC---
Confidence 34444444444333 44455555555555555 444566666655554 1 12 23334444445556666
Q ss_pred hhhhhHHHHHHHHHHHHHC
Q 014860 230 INHVYMETIRCLFKQMVND 248 (417)
Q Consensus 230 ~~~~~~~~a~~~~~~m~~~ 248 (417)
+++|.+.++.+.+.
T Consensus 87 -----Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 87 -----YEKALKYVRGLLQT 100 (152)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhc
Confidence 66666666665554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.89 E-value=1.8 Score=33.46 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860 338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE 405 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 405 (417)
.++.++|.++|+.++..+-+. ...|-....-=.+.|+.+.|.+++..-+..+..+...+...|+.+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 367788888888886653333 5555544444567888888888888888876557777777777764
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.86 E-value=3.4 Score=37.81 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR-----KGFVPSSKSY 328 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~ 328 (417)
...++..+...|++++|...+..+... -+.+...|..+|.++.+.|+..+|++.|++..+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566666777777777776666542 234666777777777777777777777766543 3777776654
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.29 E-value=1.2 Score=40.89 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITYR 364 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~ 364 (417)
+...++..+...|++++|...+..+... -+.+...|..+|.+|.+.|+..+|++.|+...+. |+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456778888999999999999988765 3458889999999999999999999999987653 9999987643
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.16 E-value=1.9 Score=32.21 Aligned_cols=85 Identities=13% Similarity=-0.007 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC-CH-HHHHHHHHHHHHcCCHhHH
Q 014860 305 RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEE---TVKNLWEMIEKQRPV-DF-ITYRTVLDEICRRGRAGEA 379 (417)
Q Consensus 305 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A 379 (417)
....+.+-|.+....|. ++..+--.+.-++.+..+..+ ++.+++++...+ .| +. ...-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555544443 455555556666666665544 666776666542 12 12 2223344567777777777
Q ss_pred HHHHHHHHHCCC
Q 014860 380 MKLLKELQNKNL 391 (417)
Q Consensus 380 ~~~~~~m~~~~~ 391 (417)
.+.++.+.+...
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 777777777654
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.29 E-value=3.2 Score=29.42 Aligned_cols=68 Identities=10% Similarity=0.171 Sum_probs=47.4
Q ss_pred HHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860 147 LGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT 219 (417)
Q Consensus 147 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~ 219 (417)
+.+.. +.=+.++-++.+...+.+ |++.+..+.+++|-+.+++..|+++|+-++.+ +......|..++.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K----~~~~~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDK----AGPHKEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----hcCchhhHHHHHH
Confidence 33444 455667777777777777 88888888888888888888888888888775 2333344555443
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.96 E-value=12 Score=34.76 Aligned_cols=265 Identities=9% Similarity=0.047 Sum_probs=158.7
Q ss_pred CChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH----HHHh
Q 014860 115 EDPLVCLELFNWASK----QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF----FAEA 186 (417)
Q Consensus 115 ~~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~----~~~~ 186 (417)
++++.|++.+..+.+ ......+......++..|...|+++...+.+..+.+.... .......+++. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q--lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ--LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT--SHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcC
Confidence 668888887765533 3445678889999999999999999998888877765443 22333344443 3334
Q ss_pred CCHHH--HHHHHHHhHhCCCCCCCC---CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH--CCCCCC---HHH
Q 014860 187 RKLSR--AVYVFKYMKNSRNLECRP---SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--DGIEPD---IFS 256 (417)
Q Consensus 187 g~~~~--a~~~~~~m~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~ 256 (417)
...+. -..+.+......+..+.. .......|...+-..|+ +.+|.+++.++.. .|.... ...
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~--------~~eA~~iL~~l~~Et~~~~~~~~kve~ 179 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGK--------IDEAADILCELQVETYGSMEMSEKIQF 179 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 43332 223333222211111122 12344668888999999 9999999999864 232222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVV---YNYLPN--SFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNS 330 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~ 330 (417)
+...+..|...+++..|..++...... ....|+ ..-+...+..+...+++.+|-..|.+..+. ...-|...+..
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~ 259 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKP 259 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 677888999999999999999987431 112222 245667777788889999998888777542 11123332222
Q ss_pred H----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHC
Q 014860 331 L----VSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR--GRAGEAMKLLKELQNK 389 (417)
Q Consensus 331 l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~ 389 (417)
+ +.+..-.+....-..++........-++...|..++.+|... .+++.+.+.|......
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 2 112222222222222333333322235667889999999765 4567777777655443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.60 E-value=2 Score=42.84 Aligned_cols=126 Identities=11% Similarity=0.022 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHhhhhCCCCCCHHH--HHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CHH
Q 014860 258 NSMIKGYILSNH-VNDALRIFHQMGVVYNYLPNSFS--YDYLIHGLCAQGR-TKNARELCDEMKRK------GFVP-SSK 326 (417)
Q Consensus 258 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~--~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~p-~~~ 326 (417)
..++..+...|+ .+.|..+|+++.+. .|.... ...+|..+...++ --+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 334444444555 57788888887663 233222 2233333333332 22455555444321 1111 111
Q ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 327 ----------SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 327 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
..+.=.+-|...|+++.|+++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111133455678999999998888765 23346799999999999999999999988874
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.20 E-value=4 Score=31.46 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH------hcCCHHHHHHHHHHhh
Q 014860 209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYI------LSNHVNDALRIFHQMG 281 (417)
Q Consensus 209 p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~------~~g~~~~a~~~~~~m~ 281 (417)
-|..+|-..+...-+.|+.. .+ ..+++..++|++.... ++|+. ..|...|..+. ..++.++|.++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~-~d-~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPL-SD-ALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSC-CH-HHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCc-hh-hHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 36677777777777777711 01 1137777777776653 34442 11222222211 2245555666665554
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860 282 VVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
.. .+--...|-....--.+.|++..|.+++......+.+
T Consensus 88 ~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 AN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42 1122444444444445555555555555555555444
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.29 E-value=9.8 Score=38.00 Aligned_cols=129 Identities=14% Similarity=0.050 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHhHhCCCCCCCCCHHH-HH-HHHHHHHhcCCccchhhhhHHHHHHHHHHHHH---
Q 014860 174 ALYNTIIYFFAEARK-LSRAVYVFKYMKNSRNLECRPSIRS-YN-ILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--- 247 (417)
Q Consensus 174 ~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~g~~p~~~~-~~-~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--- 247 (417)
.....++..+...++ ++.|+.+|+++.+. .|...+ +. .+|..+...++ . --+|.+++.+..+
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~-----~p~~~~~~~~~~i~~~~~~~~-~------Ev~av~ll~~~l~~~~ 316 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK-----DPIHDIYYKTAMITILDHIET-K------ELDMITILNETLDPLL 316 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTTCGG-G------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhh-----CCchhHHHHHHHHHHHHHhhh-h------hHHHHHHHHHHHHHhh
Confidence 344566666666666 68899999999886 444333 22 33333333332 1 2334444443331
Q ss_pred ----CCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 248 ----DGIEPDIF----------SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC 313 (417)
Q Consensus 248 ----~g~~p~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 313 (417)
.-..-+.. ....=.+-+...|+++.|+++.++...- .+-+-.+|..|..+|...|+++.|+-.+
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 11111111 1222234566789999999999998762 2345889999999999999999999999
Q ss_pred HHH
Q 014860 314 DEM 316 (417)
Q Consensus 314 ~~m 316 (417)
+.+
T Consensus 395 NSc 397 (754)
T 4gns_B 395 NSM 397 (754)
T ss_dssp HHS
T ss_pred hcC
Confidence 887
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.16 E-value=5.4 Score=28.30 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 308 NARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 308 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
+..+-++.+....+.|+.....+.+++|.+..++..|.++|+..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555555544443
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.46 E-value=21 Score=37.78 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860 142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
.++..+...+..+.+.++..-.. .+...--.+.++|..+|++++|.+.|.+...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 45556666777777666554332 2334444566788889999999999987643
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.62 E-value=4.9 Score=29.93 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 014860 331 LVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
|.-++.+.|++++|.++++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555555555555554
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.36 E-value=7.2 Score=29.32 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860 152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT 219 (417)
Q Consensus 152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~ 219 (417)
|.=+..+-++.+...+.+ |++.+..+.+++|-+.+++..|+++|+-++.+ +.+....|..++.
T Consensus 68 D~wElrrglN~l~~~DlV-PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K----~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDK----AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCCchhhHHHHHH
Confidence 444566677777777777 88888888888888888888888888888775 3333444554443
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.95 E-value=33 Score=35.13 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH---HHHHHHHhcCCHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKG--YILSNHVNDALRIFHQMGVVYNYLPNSFSYD---YLIHGLCAQGRTKNA 309 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---~li~~~~~~g~~~~A 309 (417)
.+.+..++..+.+.. +..+...+..+ +...|+.+.+..+++.+... ..|. .-|. ++.-+|+..|+....
T Consensus 506 ~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~-vRygaa~alglAyaGTGn~~aI 579 (963)
T 4ady_A 506 PEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESL-LRYGGAFTIALAYAGTGNNSAV 579 (963)
T ss_dssp HHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHH-HHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHH-HHHHHHHHHHHHhcCCCCHHHH
Confidence 444555555554431 22333333333 33567777777777776652 1122 2222 223345566776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHH
Q 014860 310 RELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA-GEAMKLLKELQN 388 (417)
Q Consensus 310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 388 (417)
.+++..+.+.. ..++.....+--++...|+.+.+.++++.+.+.+ .|.+.--..+.-+....|.. .++..++..+..
T Consensus 580 q~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 580 KRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66777776542 2233333333334444555555556655554432 23333333333344444443 466667777765
Q ss_pred C
Q 014860 389 K 389 (417)
Q Consensus 389 ~ 389 (417)
.
T Consensus 658 D 658 (963)
T 4ady_A 658 D 658 (963)
T ss_dssp C
T ss_pred C
Confidence 3
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.06 E-value=42 Score=35.49 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=91.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC---------------
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF--------------- 169 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------- 169 (417)
..++..+...+.++.|.++..|.. .++..--.+..++...|++++|.+.|.+....-..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 346666777888999998888773 24444345566788999999999999775321100
Q ss_pred ------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC--HHHHHHHHHHHHhcCCccchhhhhHHHHHHH
Q 014860 170 ------CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS--IRSYNILFTAFLSRGKNTYINHVYMETIRCL 241 (417)
Q Consensus 170 ------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~ 241 (417)
..-..-|..++..+-+.+.++.++++-....+....+ .++ ...|..++.++...|+ +++|...
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~--------ye~Ay~a 960 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGK--------FDAAHVA 960 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCC--------SGGGGHH
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCC--------HHHHHHH
Confidence 0112346667777777777777776666555431000 111 1246777777777777 7777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 242 FKQMVNDGIEPDIFSLNSMIKGYILSNHV 270 (417)
Q Consensus 242 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 270 (417)
+-.+.+... -......+|...|..|..
T Consensus 961 L~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 961 LMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 766665432 234555566666655543
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.91 E-value=11 Score=28.44 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860 345 VKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL 404 (417)
Q Consensus 345 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 404 (417)
.+-++.+....+.|++....+.+++|-+.+++..|.++|+-.+.+--+...+|..+++-+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 333444444445555555555555555555555555555555544322333344444443
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.60 E-value=39 Score=34.68 Aligned_cols=275 Identities=9% Similarity=0.025 Sum_probs=150.8
Q ss_pred HhccCChhHHHHHHHHhhcCCC-CCCC---HHHHHHHHHHHH--ccCC-hhHHHHHHHHHHcCCCCCCCHHH--HH--HH
Q 014860 111 MTLQEDPLVCLELFNWASKQPR-FRHD---ASTYHIMTRKLG--AAKM-YQEMDDVVNQMLATPSFCGTEAL--YN--TI 179 (417)
Q Consensus 111 l~~~~~~~~A~~~~~~~~~~~~-~~~~---~~~~~~li~~~~--~~~~-~~~a~~~~~~m~~~~~~~~~~~~--~~--~l 179 (417)
+...|...++++++........ +.-+ ...-...+-+++ -.|. -+++.+.+..+.... +..+ .. +|
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd----~~~~~~~AalAL 496 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND----SATSGEAAALGM 496 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC----CHHHHHHHHHHH
Confidence 3556665677776666543221 1111 111111222333 2332 245666666665542 2221 11 22
Q ss_pred HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH--HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT--AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL 257 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~--~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 257 (417)
.-.+.-.|+-+....++..+.+. . +......+.. ++...|+ .+.+..+.+.+.... .|...--
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~-----~-~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~-dp~vRyg 561 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQET-----Q-HGNITRGLAVGLALINYGR--------QELADDLITKMLASD-ESLLRYG 561 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHC-----S-CHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCS-CHHHHHH
T ss_pred hhhhcccCCHHHHHHHHHHHhcc-----C-cHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCC-CHHHHHH
Confidence 23344557878788888877764 1 3333333433 4456788 777777778777642 2222222
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 258 N--SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH--GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 258 ~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
. ++.-+|+..|+.....++++.+..+ ++..+-...+. ++...|+.+.+.++++.+.+.+ .|.++.-.++.-
T Consensus 562 aa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalAL 636 (963)
T 4ady_A 562 GAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFAL 636 (963)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 2 3344677888988888899998862 33333333333 4445777777788887666654 456655555555
Q ss_pred HHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---------CHhHHHHHHHHHHHCCC--CChhhHHHHH
Q 014860 334 ALALNGEV-EETVKNLWEMIEKQRPVDFITYRTVLDEICRRG---------RAGEAMKLLKELQNKNL--IDGYTYTKLL 401 (417)
Q Consensus 334 ~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~~--p~~~t~~~ll 401 (417)
+....|.. .++.+.+..+... +|..+-..-+.+++..| ++...++.+.......- ++...-..+-
T Consensus 637 Gli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iA 713 (963)
T 4ady_A 637 GIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVA 713 (963)
T ss_dssp HHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 55555553 5788888888753 56655554555554433 34444454444444322 3345555566
Q ss_pred HHHHhhcCccc
Q 014860 402 DVLEDDFGNSI 412 (417)
Q Consensus 402 ~~~~~~~~~~~ 412 (417)
.++...||+.+
T Consensus 714 qGll~aG~~n~ 724 (963)
T 4ady_A 714 QGIMNAGGRNV 724 (963)
T ss_dssp HHHHTTGGGTE
T ss_pred HHHHhcCCCce
Confidence 78888777653
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.83 E-value=4.5e-05 Score=70.49 Aligned_cols=253 Identities=9% Similarity=0.085 Sum_probs=163.0
Q ss_pred CCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860 98 LPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYN 177 (417)
Q Consensus 98 ~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 177 (417)
...+..|..|..+....+...+|++.|- + .-|+..|..+|.+..+.|.+++-...+....+.. .+..+=+
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyI----k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDt 120 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYI----K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVET 120 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSC----C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHH----h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHH
Confidence 3445678888888888888888877651 2 2477788888888888888888777776555442 3445556
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860 178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL 257 (417)
Q Consensus 178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 257 (417)
.|+-+|++.+++.+..+++ . .|+..-...+-.-|...|. ++.|.-+|..+. -|
T Consensus 121 eLi~ayAk~~rL~elEefl----~------~~N~A~iq~VGDrcf~e~l--------YeAAKilys~is---------N~ 173 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI----N------GPNNAHIQQVGDRCYDEKM--------YDAAKLLYNNVS---------NF 173 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT----S------CCSSSCTHHHHHHHHHSCC--------STTSSTTGGGSC---------CC
T ss_pred HHHHHHHhhCcHHHHHHHH----c------CCCcccHHHHHHHHHHccC--------HHHHHHHHHhCc---------cH
Confidence 7888888888766543332 1 2444445566677777777 666655553322 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL 337 (417)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 337 (417)
.-|-..+.+.|++..|.+.-++ ..++.||-.+-.+|...+.+.-|.-.--.+.-. || -...++..|-.
T Consensus 174 akLAstLV~L~~yq~AVdaArK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~ 241 (624)
T 3lvg_A 174 GRLASTLVHLGEYQAAVDGARK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQD 241 (624)
T ss_dssp TTTSSSSSSCSGGGSSTTTTTT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHh
Confidence 3444556677777666443222 256778999999999999988776554444432 12 23456778889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCChhhHHHHHHHHHhh
Q 014860 338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK-NLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~ 407 (417)
.|.+++-..+++.-... -+.....|+-|.-.|++- +.++.++.++-.-.+ ++| .+|++|.+.
T Consensus 242 ~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip------KviracE~a 304 (624)
T 3lvg_A 242 RGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP------KVLRAAEQA 304 (624)
T ss_dssp TCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT------TTHHHHTTT
T ss_pred CCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH------HHHHHHHHH
Confidence 99999988888776632 245677888888888877 555555555443222 223 356777655
No 250
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.10 E-value=12 Score=30.28 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHHHHHHc--cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCC
Q 014860 130 QPRFRHDASTYHIMTRKLGA--AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLEC 207 (417)
Q Consensus 130 ~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~ 207 (417)
...++-|+.-....|...-. .++..++.++|..|...+....-...|......+-..|++++|.++|+.-.++ +-
T Consensus 70 ~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~---~A 146 (202)
T 3esl_A 70 METYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN---NC 146 (202)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TC
T ss_pred cccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Confidence 44567788777766665444 56678999999999999887678899999999999999999999999999987 56
Q ss_pred CCC
Q 014860 208 RPS 210 (417)
Q Consensus 208 ~p~ 210 (417)
.|-
T Consensus 147 ~P~ 149 (202)
T 3esl_A 147 RPY 149 (202)
T ss_dssp BSH
T ss_pred ccH
Confidence 663
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.06 E-value=30 Score=30.30 Aligned_cols=173 Identities=10% Similarity=-0.038 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
..|.++..-|.+.+++++|++++..--.. +.+.|+...+ .|.|.-+.+...+.+++++
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~------------------ll~~~Q~~sa----~DLa~llvev~~~~~~~~~ 91 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALS------------------FLKAKQGGSG----TDLIFYLLEVYDLAEVKVD 91 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHTTCHHHH----HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------HHHCCCcchH----HHHHHHHHHHHHHcCCCCC
Confidence 45667777788888888888776554332 3444551110 3344445566666777888
Q ss_pred HHHHHHHHHHHHhcCC-----HHHHHHHHHHhhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014860 254 IFSLNSMIKGYILSNH-----VNDALRIFHQMGVVYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS 327 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 327 (417)
.....-++..+..... .+-..+......+..+ -.-+......+-..|.+.|++.+|+.-|- .|-.-|...
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~ 167 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIK 167 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHH
Confidence 7777777776655332 1222223333333111 12366777788888888888888877654 111113445
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860 328 YNSLVSALALN---GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ 387 (417)
Q Consensus 328 ~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 387 (417)
+..++--+... |...++- ... ...+--|.-.|+...|..+|+...
T Consensus 168 ~a~~l~~w~~~~~~~~~~e~d--------------lf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 168 YVDLLWDWLCQVDDIEDSTVA--------------EFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHTTCCCHHHHH--------------HHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHH--------------HHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555444443 4333321 111 222233455677777777777654
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.57 E-value=13 Score=26.23 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 348 (417)
..++|..+-+.+.. .+. ...+--+-+..+.+.|++++|..+.+.+. -||...|-+|-. .+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHL-KGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 34555555555544 111 11111222333445555555555444332 445555544422 3445555555444
Q ss_pred HHHHHc
Q 014860 349 WEMIEK 354 (417)
Q Consensus 349 ~~m~~~ 354 (417)
.++...
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 444443
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.47 E-value=23 Score=28.53 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHccCC
Q 014860 136 DASTYHIMTRKLGAAKM 152 (417)
Q Consensus 136 ~~~~~~~li~~~~~~~~ 152 (417)
+...-...+..+++.+.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444433
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.40 E-value=10 Score=29.69 Aligned_cols=97 Identities=7% Similarity=-0.051 Sum_probs=66.8
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCCCC-------HHHHHHHHHHHHccCChhHHHHHHHHHHcCCC----------
Q 014860 106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHD-------ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPS---------- 168 (417)
Q Consensus 106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------- 168 (417)
.-+..+...+.++.|.-+.+.+....+..++ ..++..+.+++...|.+..|...|++.++...
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3456667788888888888776443222333 23556677788899999999999998543110
Q ss_pred -------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 169 -------------FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 169 -------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
...+...--.+..+|.+.|++++|+.+++.+..+
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0012234445788999999999999999988654
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.17 E-value=39 Score=29.93 Aligned_cols=173 Identities=10% Similarity=0.002 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 253 (417)
.+|.++..-|.+.+++++|++++..--.. +.+.|+...+ .|.+.-+.+-..+.++++|
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~------------------ll~~~Q~~sg----~DL~~llvevy~~~~~~~~ 93 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQT------------------LLRSGQGGSG----GDLAVLLVDTFRQAGQRVD 93 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHTTCHHHH----HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH------------------HHHCCCcchH----HHHHHHHHHHHHHcCCCCC
Confidence 34566777788888888888876543321 3344441110 3444444455566677777
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHh----hhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860 254 IFSLNSMIKGYILSNHVN-DALRIFHQM----GVVYN--YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326 (417)
Q Consensus 254 ~~~~~~li~~~~~~g~~~-~a~~~~~~m----~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 326 (417)
.....-++..+.....-+ .-.++++.+ .+ .| -.-|......+-..|.+.+++.+|+.-|- .|-.++..
T Consensus 94 ~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~ 168 (336)
T 3lpz_A 94 GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPE 168 (336)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHH
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHH
Confidence 777777777666554311 112222222 22 22 22356666777888888888888887762 24444446
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
.|..++.-+...+...+ ++... ...+--|.-.++...|..+++...+
T Consensus 169 ~~a~mL~ew~~~~~~~e--------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 169 VLARMEYEWYKQDESHT--------------APLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHTSCGGG--------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcc--------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67665555544433111 12222 2233345556777777776655543
No 256
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.87 E-value=25 Score=27.07 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=58.4
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC
Q 014860 131 PRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP 209 (417)
Q Consensus 131 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p 209 (417)
...+-|+.-...-|...-.. +++.++|..|...+....-...|......+-..|++++|.++|+.-.++ +-.|
T Consensus 62 ~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~---~A~P 134 (152)
T 4a1g_A 62 KKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN---QAEP 134 (152)
T ss_dssp GGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCBS
T ss_pred ccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCcc
Confidence 34566777666666554333 3488999999999887677899999999999999999999999999887 5566
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.59 E-value=24 Score=32.52 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860 235 METIRCLFKQMVNDG-IEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVY-NYLPNSFSYDYLIHGLCAQGRTKNARE 311 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 311 (417)
+++..+......+.. ... -..+...+...|.+.|+++.|.+.+.++.... +...-...+-.+|..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444444444444422 122 22366778888899999999999998887621 233345667778888888888888888
Q ss_pred HHHHHHH---CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014860 312 LCDEMKR---KGFVPSSK----SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRT 365 (417)
Q Consensus 312 l~~~m~~---~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 365 (417)
.+.+... .+-.|+.. .|..+ .+...+++.+|...|-+....--..+...+..
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl--~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~ 248 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGI--HCLAVRNFKEAAKLLVDSLATFTSIELTSYES 248 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHH--GGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHH--HHHHhChHHHHHHHHHHHhccCCccchhhHHH
Confidence 8877653 23233322 12222 23346778888777777655422334444443
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.42 E-value=13 Score=26.24 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860 269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 348 (417)
..++|..+-+.+.. .+. ...+--+-+..+.+.|++++|..+.+.+. -||...|-+|-. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLER-LGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 44555555555544 111 11111222334445555555555443322 445555544422 3455555555555
Q ss_pred HHHHHc
Q 014860 349 WEMIEK 354 (417)
Q Consensus 349 ~~m~~~ 354 (417)
.++..+
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 444444
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.76 E-value=11 Score=32.07 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860 298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 354 (417)
....+.|++++|+.....-.+.. +-|...=..|+..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566778888877777766653 336777777888888888888888777776664
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.38 E-value=11 Score=32.29 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860 145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 202 (417)
..+.+.|+++++++....-++..+ .|...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P--~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345577888888877777776654 67777788888888888888888877777664
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.37 E-value=20 Score=25.33 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|.-++++..+.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 7899999998888763 33333344566788999999999987775 499999988754 57888899998888
Q ss_pred HHHHCC
Q 014860 315 EMKRKG 320 (417)
Q Consensus 315 ~m~~~g 320 (417)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 888876
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.33 E-value=19 Score=25.38 Aligned_cols=77 Identities=14% Similarity=0.031 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD 314 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 314 (417)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|- -.+.|.-++++..+.
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 7899999998888763 33333344566788999999998887665 49999998875 468899999999998
Q ss_pred HHHHCC
Q 014860 315 EMKRKG 320 (417)
Q Consensus 315 ~m~~~g 320 (417)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 998876
No 263
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=71.42 E-value=96 Score=31.82 Aligned_cols=163 Identities=12% Similarity=0.059 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG----IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 289 (417)
-..++...|..|+... .+.|.+.|++....+ ++||.. ..+...-.+.|.-++-..+++.... ..+
T Consensus 689 r~~~l~~ac~~g~~~c-----~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~----~~~ 757 (909)
T 4fke_A 689 EINAISTACSNGLPQC-----ENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQ----AQL 757 (909)
T ss_dssp HHHHHHHHHHTTCHHH-----HHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHH----CCS
T ss_pred HHHHHHHHHHhccHHH-----HHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHc----cCC
Confidence 3457777888887433 677888888877532 456543 3333344466777776777777766 245
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc---CCCCCHHHHH
Q 014860 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKG-FVPSSKSYNSLVSALALNG-EVEETVKNLWEMIEK---QRPVDFITYR 364 (417)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~---g~~p~~~~~~ 364 (417)
..--..++.+++...+.+...++++...... +++. .... ++.+..... ..+.|++.+.+=-+. ........+.
T Consensus 758 ~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~ 835 (909)
T 4fke_A 758 VNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFS 835 (909)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHH
Confidence 5566788999999999988888888776543 3332 2222 333333322 234455555432111 1222333566
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 365 TVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
.+|...+..-..++-++-+++..+.
T Consensus 836 ~~i~~~~~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 836 NLIQGVTRRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 7777776655444444444554443
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.94 E-value=35 Score=26.65 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860 364 RTVLDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
-.+-.+|.+.|++++|+.+++.+..+
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34667889999999999998876443
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.38 E-value=36 Score=26.54 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC
Q 014860 130 QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP 209 (417)
Q Consensus 130 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p 209 (417)
....+-|+.-....|...-.. +...++|..|...+....-...|......+-..|++.+|.++|..-.++ +-.|
T Consensus 56 ~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~---~A~P 129 (164)
T 2wvi_A 56 EKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ---KAEP 129 (164)
T ss_dssp CGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCBS
T ss_pred hhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCc
Confidence 344577888777777554444 3477899999999887677889999999999999999999999999987 5667
Q ss_pred CH
Q 014860 210 SI 211 (417)
Q Consensus 210 ~~ 211 (417)
-.
T Consensus 130 ~~ 131 (164)
T 2wvi_A 130 LE 131 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.84 E-value=42 Score=26.62 Aligned_cols=19 Identities=0% Similarity=-0.174 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHHhCCH
Q 014860 171 GTEALYNTIIYFFAEARKL 189 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~ 189 (417)
++..+-...+.++.+.|..
T Consensus 57 ~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhhCCH
Confidence 3444444444555555443
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=67.18 E-value=47 Score=26.57 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 014860 288 PNSFSYDYLIHGLCAQGR 305 (417)
Q Consensus 288 ~~~~~~~~li~~~~~~g~ 305 (417)
++..+-...+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 444444444444444444
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.08 E-value=49 Score=26.78 Aligned_cols=57 Identities=16% Similarity=-0.031 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 014860 303 QGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD 359 (417)
Q Consensus 303 ~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 359 (417)
.+...++.++|..|...||--. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4446688888888887766433 55677777777788888888888888887766664
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.42 E-value=99 Score=30.05 Aligned_cols=272 Identities=11% Similarity=0.016 Sum_probs=149.5
Q ss_pred hhHHHHHHhcCCCCCCHHH----HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 014860 88 DTQFRCAVSELPPRFNNEE----LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQM 163 (417)
Q Consensus 88 ~~~~~~~l~~~p~~~~~~~----ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 163 (417)
...+..-+...|+..-.+. -+..+.+.+++...+.++. . .+.+...-.....+....|+-.+|......+
T Consensus 55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~----~--~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 55 AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP----E--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC----S--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc----C--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 3456666666666544433 3455567778887777542 2 2456666667777888888888888877777
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHhCCHHH--HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHH
Q 014860 164 LATPSFCGTEALYNTIIYFFAEARKLSR--AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCL 241 (417)
Q Consensus 164 ~~~~~~~~~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~ 241 (417)
-..+. ........++..+.+.|.+.. ..+-++.+...+ +...-..++... ..+. -..+..
T Consensus 129 W~~~~--~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~------~~~~a~~l~~~l-~~~~--------~~~a~~- 190 (618)
T 1qsa_A 129 WLTGK--SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG------NTGLVTVLAGQM-PADY--------QTIASA- 190 (618)
T ss_dssp HSCSS--CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------CHHHHHHHHHTC-CGGG--------HHHHHH-
T ss_pred HhCCC--CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHhC-CHHH--------HHHHHH-
Confidence 77765 344566777777777665432 333344444331 111111111111 0000 000000
Q ss_pred HHHHHHC---------CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHH----HhcCC
Q 014860 242 FKQMVND---------GIEPDIFSLN---SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGL----CAQGR 305 (417)
Q Consensus 242 ~~~m~~~---------g~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~----~~~g~ 305 (417)
+..+.+. .+.++...-. ..+.-+.+ .+.+.|...+........+ +......+-..+ ...+.
T Consensus 191 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~ 267 (618)
T 1qsa_A 191 IISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDV 267 (618)
T ss_dssp HHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTC
T ss_pred HHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCC
Confidence 1111110 0122322212 22333333 3778999999888653333 333333333333 33443
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
..++...+....... .+.......+....+.|+++.|...|+.|..... ....-.--+-+++...|+.++|..+|..
T Consensus 268 ~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666666655432 3444455555556678999999999998876422 1333344566678889999999999999
Q ss_pred HHHC
Q 014860 386 LQNK 389 (417)
Q Consensus 386 m~~~ 389 (417)
+...
T Consensus 345 ~a~~ 348 (618)
T 1qsa_A 345 LMQQ 348 (618)
T ss_dssp HHTS
T ss_pred HhcC
Confidence 8753
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.15 E-value=81 Score=28.95 Aligned_cols=100 Identities=8% Similarity=-0.063 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND--GIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 289 (417)
.++..+..-|.+.|+ ++.|.+.|.++.+. +..--...+-.+|..+...+++..+...+.+......-.++
T Consensus 132 ~~~~~la~~~~~~Gd--------~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 132 QAWINLGEYYAQIGD--------KDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp SCCHHHHHHHHHHCC--------CTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 356778899999999 99999999999864 33334567788899999999999999999988653222233
Q ss_pred HHHHHHH----HHHHHhcCCHHHHHHHHHHHHHC
Q 014860 290 SFSYDYL----IHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 290 ~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
....+.+ ...+...+++..|-..|-+....
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2222221 11233568899998888776654
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=65.52 E-value=40 Score=25.22 Aligned_cols=82 Identities=11% Similarity=-0.001 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC--Ch
Q 014860 320 GFVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI--DG 394 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p--~~ 394 (417)
+-.|+..+--.+.-++.+..+ ..+++.+++++.+.+-.-.....-.|.-++.+.|++++|.+..+.+.+...- ..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 334555554445555666554 3457777777766541112233444556777888888888888877776532 23
Q ss_pred hhHHHHH
Q 014860 395 YTYTKLL 401 (417)
Q Consensus 395 ~t~~~ll 401 (417)
.+...+|
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 272
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=62.21 E-value=53 Score=27.05 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC
Q 014860 132 RFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP 209 (417)
Q Consensus 132 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p 209 (417)
.++-|..-....|...- ..++..++|..|...+....-...|......+-..|++++|..+|+.-.++ +-.|
T Consensus 112 rYknD~RyLklWl~Ya~---~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~---~A~P 183 (223)
T 4aez_C 112 LYKDDVRYLRIWMQYVN---YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM---KAKP 183 (223)
T ss_dssp GGTTCHHHHHHHHHHHT---TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TCBS
T ss_pred cccCCHHHHHHHHHHHH---ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCcc
Confidence 44566666555554433 235778899999999887678899999999999999999999999998887 5566
No 273
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=59.63 E-value=0.75 Score=43.09 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=126.8
Q ss_pred CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860 99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT 178 (417)
Q Consensus 99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 178 (417)
.++..|..++++..+.|.+++-+..+.-.++. .-++..=+.++.+|++.+++.+.++++. . ||..-...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~----~----~N~A~iq~ 149 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----G----PNNAHIQQ 149 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS----C----CSSSCTHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc----C----CCcccHHH
Confidence 56678899999999999999999988766433 2344555678999999999887655432 1 66666677
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCC-----------------CCCCCHHHHHHHHHHHHhcCCccc------------
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNL-----------------ECRPSIRSYNILFTAFLSRGKNTY------------ 229 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~-----------------g~~p~~~~~~~li~~~~~~g~~~~------------ 229 (417)
+.+-|...|.++.|.-+|..+.....+ .---++.||.-+-.+|...++..-
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha 229 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA 229 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH
Confidence 888888999999888888766543100 002367789999999999887211
Q ss_pred ----------hhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC------CHHHH
Q 014860 230 ----------INHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP------NSFSY 293 (417)
Q Consensus 230 ----------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~ 293 (417)
-.++++++.+.+++.-.... ......|+-|--.|++- +.++..+-++..-.+-+++. ....|
T Consensus 230 deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 230 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 12333555555555444211 34566777777667665 34444444433322223322 23346
Q ss_pred HHHHHHHHhcCCHHHHH
Q 014860 294 DYLIHGLCAQGRTKNAR 310 (417)
Q Consensus 294 ~~li~~~~~~g~~~~A~ 310 (417)
.-++-.|+.-.+++.|.
T Consensus 308 ~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcchhHHHHH
Confidence 66777777766666553
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.46 E-value=1e+02 Score=27.93 Aligned_cols=170 Identities=12% Similarity=0.023 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC---CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP---SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI 250 (417)
Q Consensus 174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~ 250 (417)
.....|...|.+.|+.++..+++.....- .+.-+ .......+|..+....+. ....++-..+.+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~kak~~k~v~~l~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~- 93 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPF--LSSISKAKAAKLVRSLVDMFLDMDAG---TGIEVQLCKDCIEWAKQEK- 93 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTG--GGGSCHHHHHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhchHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHHHH-
Confidence 45567888889999999888888877543 12222 234466778877776542 1222444555555554432
Q ss_pred CCCHHHH------HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 014860 251 EPDIFSL------NSMIKGYILSNHVNDALRIFHQMGVVYNYLP----NSFSYDYLIHGLCAQGRTKNARELCDEMKRK- 319 (417)
Q Consensus 251 ~p~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 319 (417)
.+| .-+...|...|++.+|.+++..+.+...-.. -...|-.-+..|...+++.++...+......
T Consensus 94 ----r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 94 ----RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 233 2578889999999999999988876322211 1345666777888999999999999877643
Q ss_pred -CCCCCHHHHHHH----HHHHH-hcCCHHHHHHHHHHHHH
Q 014860 320 -GFVPSSKSYNSL----VSALA-LNGEVEETVKNLWEMIE 353 (417)
Q Consensus 320 -g~~p~~~~~~~l----i~~~~-~~g~~~~A~~~~~~m~~ 353 (417)
.+.+++..-..+ -..+. ..+++..|...|-+..+
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 233444433222 12334 67899999888877643
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.08 E-value=96 Score=27.42 Aligned_cols=174 Identities=9% Similarity=-0.003 Sum_probs=94.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH----HHHHHHhHhCCCCCCCCCHHHHH
Q 014860 140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA----VYVFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~~~~g~~p~~~~~~ 215 (417)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...| .-+.+-..+. ++++|.....
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~sg~DL~~llvevy~~~---~~~~~~~~~~ 98 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGSGGDLAVLLVDTFRQA---GQRVDGASRG 98 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHH---TCCCCHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHc---CCCCCHHHHH
Confidence 34455667888999998887654322 22334444333 2333444444 6677777777
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY 295 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 295 (417)
-++..+......+-.....+++|++.=...- ..-.-|......+-..|.+.+++.+|+.-|- .|..++...|..
T Consensus 99 rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-----lg~~~s~~~~a~ 172 (336)
T 3lpz_A 99 KLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-----LGTKESPEVLAR 172 (336)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-----TSCTTHHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-----hcCCchHHHHHH
Confidence 7777776655422112222333333322211 1123456667778888999999999988772 233344466766
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
++--+...+...++- ... .-.+-.|.-.+++..|..+++...+
T Consensus 173 mL~ew~~~~~~~e~d--------------lfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 173 MEYEWYKQDESHTAP--------------LYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTSCGGGHH--------------HHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHH--------------HHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 655554444322221 111 2223344556777777776665553
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.84 E-value=71 Score=25.19 Aligned_cols=154 Identities=11% Similarity=-0.008 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860 171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI 250 (417)
Q Consensus 171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~ 250 (417)
+|..+-...+..+.+.+..+....+.+.+.. ++...-...+.++...++ . .+...+.++..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~-------~~~~vr~~a~~~L~~~~~--------~-~~~~~L~~~l~--- 86 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKD-------EDAWVRRAAADALGQIGD--------E-RAVEPLIKALK--- 86 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHHHHHHHHHHHHHHCC--------G-GGHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcC-------CCHHHHHHHHHHHHhhCC--------H-HHHHHHHHHHc---
Confidence 4555555566666666654433333333321 345555555666666665 2 22223333332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNS 330 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 330 (417)
.++..+-...+.++.+.|+.+....+...+. .++..+-...+.++++.+..+ +...+..+... ++...-..
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~ 157 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKALK-----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQS 157 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHH
Confidence 3566666666666666666443333333332 256656666666666666533 33333333322 35445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 014860 331 LVSALALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~m~~ 353 (417)
.+.++.+.|.. ++...+..+..
T Consensus 158 A~~aL~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 158 AADALGEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHHHHHhCch-hHHHHHHHHHh
Confidence 55555555542 33444444443
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.41 E-value=1.1e+02 Score=26.70 Aligned_cols=171 Identities=12% Similarity=0.047 Sum_probs=95.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHH----HHHHhHhCCCCCCCCCHHHHH
Q 014860 140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY----VFKYMKNSRNLECRPSIRSYN 215 (417)
Q Consensus 140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~g~~p~~~~~~ 215 (417)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.. +.+-..+. +.+++.....
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~---~~~~~~~~~~ 96 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLA---EVKVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHT---TCCCSHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHc---CCCCCHHHHH
Confidence 33455667778888888887654322 2334455444333 44555554 6677777777
Q ss_pred HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860 216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI--EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293 (417)
Q Consensus 216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (417)
-++..+......+......+++|+ ....+.|- .-+......+-..|.+.|++.+|+.-|-.-. .-|...+
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai---~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-----~~s~~~~ 168 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMN---NWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-----HDSMIKY 168 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHH---HHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-----HHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHH---HHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CccHHHH
Confidence 777776664432211222233333 33333321 2467788888899999999999988775221 1234455
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 294 DYLIHGLCAQ---GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352 (417)
Q Consensus 294 ~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 352 (417)
..++--+... |...++--++. -.+-.|.-.|++..|..+|+...
T Consensus 169 a~~l~~w~~~~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 169 VDLLWDWLCQVDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 5555544443 44333222211 12233445678888888877665
No 278
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=53.88 E-value=24 Score=22.61 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
++.++..+++-.-+++++..+++..+.| ..+..+|-.-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554 24444454444444443
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.43 E-value=1.3e+02 Score=27.26 Aligned_cols=275 Identities=9% Similarity=0.011 Sum_probs=150.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHHcc-CChhHHHHHHHHHHcCCCCCC----CHHH
Q 014860 104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRH---DASTYHIMTRKLGAA-KMYQEMDDVVNQMLATPSFCG----TEAL 175 (417)
Q Consensus 104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~----~~~~ 175 (417)
...+...|...|+.++..+++...+.-.+.-+ .......++..+... +..+.-.++..+..+...... ...+
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999999999988743222222 344566777777653 344444455444443211101 1112
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHhCC-CC-CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH--CCCC
Q 014860 176 YNTIIYFFAEARKLSRAVYVFKYMKNSR-NL-ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--DGIE 251 (417)
Q Consensus 176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~-g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--~g~~ 251 (417)
=.-++..|...|++.+|.+++.++.+.- .. +-.--...|-.-+..|...++ ..++...+..... ..+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n--------~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN--------LPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhhccCC
Confidence 3368899999999999999999887740 00 001114557778888999999 8888888877653 2232
Q ss_pred CCHHHHHHHH----HHHH-hcCCHHHHHHHHHHhhhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCC
Q 014860 252 PDIFSLNSMI----KGYI-LSNHVNDALRIFHQMGVVYNYLP-----NSFSYDYLIHGLCAQGRTKNARELCD-EMKRKG 320 (417)
Q Consensus 252 p~~~~~~~li----~~~~-~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g 320 (417)
+++.+...+- ..+. ..+++..|...|-+.-+.+.-.- +...|..+ .+..... ..+...++. .....-
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~-r~el~~~l~~~~~~~~ 251 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQ-SDDVNQLVSGKLAITY 251 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTC-GGGHHHHHHSHHHHTT
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCC-HHHHHHHhcccccccc
Confidence 4443332221 2234 68899999888776643232111 12233222 2223222 222222221 211111
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHH-----HHH----------------Hc-CC
Q 014860 321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT---YRTVLD-----EIC----------------RR-GR 375 (417)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~-----~~~----------------~~-g~ 375 (417)
..|....+..++.+| ..+++.+...++..... .+..|... +..|.. ++. .. =.
T Consensus 252 ~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls 329 (394)
T 3txn_A 252 SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP 329 (394)
T ss_dssp CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC
T ss_pred CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC
Confidence 345666667777765 44677666666554432 23334432 111111 110 01 15
Q ss_pred HhHHHHHHHHHHHCC
Q 014860 376 AGEAMKLLKELQNKN 390 (417)
Q Consensus 376 ~~~A~~~~~~m~~~~ 390 (417)
.++++..+.+|+..|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 678888899988876
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.18 E-value=90 Score=25.95 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860 259 SMIKGYILSNHVNDALRIFHQMGVVY-NYLP----NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS 333 (417)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 333 (417)
--++.+....++++|.+++++.++.. +.+. +.......+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 35777888888888888888776522 1221 111222333333444444455566666633 445666677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 014860 334 ALALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 334 ~~~~~g~~~~A~~~~~~m~~~ 354 (417)
.+.+.|+.++|.++|-+....
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHH
Confidence 888888888888888776653
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.36 E-value=61 Score=24.86 Aligned_cols=67 Identities=16% Similarity=0.325 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR--TKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 324 (417)
..+.+|.-|...|+.++|.+.++++.. . .-....+..++..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-C-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 346678888888999999999988864 1 11233445555556655432 4567777777777765543
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.62 E-value=71 Score=23.63 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445555555566666666665554
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.48 E-value=71 Score=23.62 Aligned_cols=68 Identities=16% Similarity=0.339 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR--TKNARELCDEMKRKGFVPSS 325 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 325 (417)
..+.++.-|...|+.++|.+.++++.. .. -....+..++..++-+.++ .+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV-PH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-GG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-Cc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356788889999999999999999964 11 1234455566666666542 46678888888877766433
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.35 E-value=64 Score=24.73 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 014860 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE--VEETVKNLWEMIEKQR 356 (417)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 356 (417)
.+.+|.-|...|+.++|.+.++++...... ...+..++..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 455666666667777777666666422111 12233333334333222 3344555555554443
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.73 E-value=1.4e+02 Score=26.71 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCC
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR--AGEAMKLLKELQNKNLI 392 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~p 392 (417)
.+.+|.-|...|+.++|.+.++++..-.+. ......++..++-+.++ .+...+++..+...|+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 566777777777777777777776532111 12233444445544332 34566677777776663
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.39 E-value=24 Score=28.82 Aligned_cols=179 Identities=8% Similarity=-0.036 Sum_probs=88.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC---HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPS---IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF 255 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~---~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 255 (417)
.+...++.|+.+.+..+++.+.+. |..++ ...+ +.+...+..|+ .+ +++.+.+.|..++..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~g~-t~L~~A~~~~~--------~~----~v~~Ll~~g~~~~~~ 75 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQG---GRELDIYNNLRQ-TPLHLAVITTL--------PS----VVRLLVTAGASPMAL 75 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT---TCCSCCCCTTSC-CHHHHHHHTTC--------HH----HHHHHHHTTCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCCCcccccCC-CHHHHHHHcCC--------HH----HHHHHHHcCCCcccc
Confidence 455667788888888888766654 32222 1222 23444556676 54 444555566555432
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---
Q 014860 256 SL--NSMIKGYILSNHVNDALRIFHQMGVVYNYLP---NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS--- 327 (417)
Q Consensus 256 ~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--- 327 (417)
.. .+.+...+..|+.+.+..+++.... .++.+ +...++. +...+..|+.+-+ +.+.+.|..++...
T Consensus 76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~ 149 (241)
T 1k1a_A 76 DRHGQTAAHLACEHRSPTCLRALLDSAAP-GTLDLEARNYDGLTA-LHVAVNTECQETV----QLLLERGADIDAVDIKS 149 (241)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHSCT-TSCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccccCcCCCcH-HHHHHHcCCHHHH----HHHHHcCCCcccccccC
Confidence 11 2344455677888777777766542 11111 1122222 3334455665444 44444555444221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHhHHHHHH
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT--YRTVLDEICRRGRAGEAMKLL 383 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~ 383 (417)
-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 150 g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 203 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMV----QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203 (241)
T ss_dssp CCCHHHHHHHTTCHHHH----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 22334444566776544 44445565554321 122334445667755444333
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=49.45 E-value=1.1e+02 Score=26.75 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCC
Q 014860 328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR--AGEAMKLLKELQNKNLI 392 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~p 392 (417)
.+.++.-|...|+.++|.+.++++...... ....+.++..++-+.++ .+...+++..+.+.|+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 578889999999999999999988632111 12234445555555433 45567788888877774
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.11 E-value=97 Score=25.74 Aligned_cols=84 Identities=8% Similarity=0.037 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860 232 HVYMETIRCLFKQMVN--DGIEP----DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR 305 (417)
Q Consensus 232 ~~~~~~a~~~~~~m~~--~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 305 (417)
...+++|.+++++..+ .+++. +.......+..-.....-..+..+.+.+.. ..+...-...+..+.+.|+
T Consensus 31 ~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~~L~rLg~ 106 (235)
T 2d2s_A 31 RLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTENMIKLGL 106 (235)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Confidence 3348888888887764 23332 112223334444444444455566666633 4566667777899999999
Q ss_pred HHHHHHHHHHHHHC
Q 014860 306 TKNARELCDEMKRK 319 (417)
Q Consensus 306 ~~~A~~l~~~m~~~ 319 (417)
.++|.++|-+....
T Consensus 107 ~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 107 PEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999887753
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.05 E-value=12 Score=29.74 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=8.3
Q ss_pred HHHhCCHHHHHHHHH
Q 014860 183 FAEARKLSRAVYVFK 197 (417)
Q Consensus 183 ~~~~g~~~~a~~~~~ 197 (417)
.+..|+.+.+..++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345566665555554
No 290
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=44.50 E-value=1e+02 Score=23.38 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC--Chh
Q 014860 322 VPSSKSYNSLVSALALNGE---VEETVKNLWEMIEKQRPVDFI-TYRTVLDEICRRGRAGEAMKLLKELQNKNLI--DGY 395 (417)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p--~~~ 395 (417)
.|+..+--.+.-++.++.+ ..+++.+++++...+-. +.. ..-.|.-++.+.|++++|.++.+.+.+...- ...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555554445555555554 33566666666654211 222 2233444677777777777777777766542 233
Q ss_pred hHHHHHH
Q 014860 396 TYTKLLD 402 (417)
Q Consensus 396 t~~~ll~ 402 (417)
+...+|.
T Consensus 115 ~Lk~~Ie 121 (144)
T 1y8m_A 115 ALKSMVE 121 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.81 E-value=66 Score=27.96 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=44.3
Q ss_pred HHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 241 LFKQMVNDGIEPDIFSL--NSMIKGYILSNHVNDALRIFHQMGVVYNYLP---NSFSYDYLIHGLCAQGRTKNARELCDE 315 (417)
Q Consensus 241 ~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 315 (417)
+.+.+.+.|..++.... .+.+...+..|..+.+..++..- |..+ |..-++.|. ..++.|+.+-+ +.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~----~~~vn~~d~~G~TpL~-~A~~~g~~~iv----~~ 291 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE----HIEINDTDSDGKTALL-LAVELKLKKIA----EL 291 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST----TCCTTCBCTTSCBHHH-HHHHTTCHHHH----HH
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc----CCcccCcCCCCCCHHH-HHHHcCCHHHH----HH
Confidence 44445666655543211 12333455666666655554321 1111 222222332 23445555433 33
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 014860 316 MKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF 360 (417)
Q Consensus 316 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 360 (417)
+.+.|..+|..+ . +..-++.|+.+ +.+.+.+.|-.||.
T Consensus 292 Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 345566555432 2 22233445543 34445556655553
No 292
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=42.19 E-value=86 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 309 ARELCDEMKRKGFVPSSKSYNSLVSALALNG 339 (417)
Q Consensus 309 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 339 (417)
|..+.++...-|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4445555555555555555555555554444
No 293
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=41.72 E-value=1.1e+02 Score=23.13 Aligned_cols=67 Identities=19% Similarity=0.126 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860 251 EPDIFSLNSMIKGYILSNHV---NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR 318 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 318 (417)
.|+..+--.+.-+++++... .++..+++.+... +-.-.....-.|.-++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444455554433 2455555555441 1111222333344455555555555555555555
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.03 E-value=19 Score=29.38 Aligned_cols=23 Identities=26% Similarity=0.095 Sum_probs=10.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHC
Q 014860 367 LDEICRRGRAGEAMKLLKELQNK 389 (417)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~m~~~ 389 (417)
+...++.|+.+-+..+++...+.
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHcCcHHHHHHHHHhhhcc
Confidence 34445566665555555544433
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.88 E-value=2e+02 Score=25.69 Aligned_cols=65 Identities=17% Similarity=0.376 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR--TKNARELCDEMKRKGFVP 323 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 323 (417)
.+.+|.-|...|+.++|.+.++++.. ..+ ....+..++..++-+.++ .+...+++..+...|+-.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~-p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV-PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-TTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC-Ccc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 45666667777777777777777754 111 123334444444444332 344566666666665543
No 296
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.85 E-value=37 Score=28.40 Aligned_cols=213 Identities=10% Similarity=0.045 Sum_probs=100.2
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHH
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF--CGTEALYNTIIYFFA 184 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~ 184 (417)
.+...++.|+.+.+..+++.- .......+..-+ ..+...+..|+.+-+..+++ .+.. ..+... .+.+...+
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g-~t~L~~A~ 80 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGW-TPLHNAVQMSREDIVELLLR----HGADPVLRKKNG-ATPFLLAA 80 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTC-CCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCC-cHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCC-CCHHHHHH
Confidence 445556778877666665432 111111111112 23444456677665544443 3322 012211 23445556
Q ss_pred HhCCHHHHHHHHHHhHhCCCCCCCC---CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHH-----
Q 014860 185 EARKLSRAVYVFKYMKNSRNLECRP---SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFS----- 256 (417)
Q Consensus 185 ~~g~~~~a~~~~~~m~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----- 256 (417)
..|+.+-+..+++ . |..+ +...++ .+...+..|+ .+ +++.+.+.|..++...
T Consensus 81 ~~~~~~~v~~Ll~----~---g~~~~~~~~~g~t-~L~~A~~~~~--------~~----~~~~Ll~~g~~~~~~~~~~~~ 140 (285)
T 1wdy_A 81 IAGSVKLLKLFLS----K---GADVNECDFYGFT-AFMEAAVYGK--------VK----ALKFLYKRGANVNLRRKTKED 140 (285)
T ss_dssp HHTCHHHHHHHHH----T---TCCTTCBCTTCCB-HHHHHHHTTC--------HH----HHHHHHHTTCCTTCCCCCCHH
T ss_pred HcCCHHHHHHHHH----c---CCCCCccCcccCC-HHHHHHHhCC--------HH----HHHHHHHhCCCcccccccHHH
Confidence 6777765554444 2 2222 222222 3334456666 44 3445555565544320
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--
Q 014860 257 -------LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS-- 327 (417)
Q Consensus 257 -------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-- 327 (417)
-.+.+...+..|+.+-+..+++....... ..+....+.+ ...+..|......++++.+.+.|..++...
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~ 218 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGER 218 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT
T ss_pred HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCC
Confidence 11344455667887777666654221011 1122222333 333455665556677777777776655321
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 014860 328 YNSLVSALALNGEVEETVKNL 348 (417)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~ 348 (417)
-.+.+...+..|+.+-+..++
T Consensus 219 g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 219 GKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHH
Confidence 123344455667765544433
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.64 E-value=1.1e+02 Score=23.03 Aligned_cols=10 Identities=0% Similarity=-0.290 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 014860 344 TVKNLWEMIE 353 (417)
Q Consensus 344 A~~~~~~m~~ 353 (417)
|.++++.+.+
T Consensus 40 a~ei~~~l~~ 49 (145)
T 2fe3_A 40 ADDIYKALEG 49 (145)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 298
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.50 E-value=77 Score=20.87 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 351 MIEKQRPVDFITYRTVLDEICRRG-RAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 351 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+. .+..|....|+.|.+.
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 444555555433 22334443332 34445556666655544 3555555555555544
No 299
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=40.19 E-value=1.2e+02 Score=23.15 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860 134 RHDASTYHIMTRKLGAA-KMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR 212 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~ 212 (417)
..+..-+..++..++.. ..-+.+..++..+-..+....+..-|..++.........+....+|+.+-..++ | ..+..
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~-G-~i~~~ 112 (183)
T 1s6c_A 35 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD-G-YINKE 112 (183)
T ss_dssp EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCS-S-CEEHH
T ss_pred cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCC-C-eEcHH
Confidence 45666677777666544 345566777877765543324444555555554444445667777777755421 2 22333
Q ss_pred HHHHHHHHHH-hcCCcc---chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860 213 SYNILFTAFL-SRGKNT---YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQ 279 (417)
Q Consensus 213 ~~~~li~~~~-~~g~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 279 (417)
-+..++..+. ..|... .......+.+..+|+.+-..| -...+|.-++..+.+...+-+....|+.
T Consensus 113 e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 113 EMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 3333333321 113200 000000245555666553322 1234566666655555555555555443
No 300
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=39.91 E-value=36 Score=24.82 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 014860 270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR-KGFVPSSKSYNSLVSALALNGEVE 342 (417)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~ 342 (417)
+.+|..-+++... . ..|......++..+... ++.++++.+...+ .|+ ++.++.-.++...+.|-++
T Consensus 4 ~~~al~~L~e~~~-~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 4 LARAVERLKAALE-R--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp HHHHHHHHHHHHS-S--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 4445555554433 1 34444455555444332 3444444443332 243 2333444444444444443
No 301
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.87 E-value=79 Score=20.81 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=45.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860 313 CDEMKRKGFVPSSKSYNSLVSALALNG-EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG 377 (417)
Q Consensus 313 ~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 377 (417)
.+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+.
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 345778898888765 44556666554 45567788888888766678888888888888887653
No 302
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=39.39 E-value=1.4e+02 Score=24.36 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860 307 KNARELCDEMKRKGFVPSSKSYNSLVSALAL 337 (417)
Q Consensus 307 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 337 (417)
+.+..++..+.+.|.--|..--.+.++....
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~ 123 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMIN 123 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3444555555555555344333444444433
No 303
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.23 E-value=35 Score=27.62 Aligned_cols=20 Identities=20% Similarity=-0.057 Sum_probs=12.5
Q ss_pred HHHHHHhCCHHHHHHHHHHh
Q 014860 180 IYFFAEARKLSRAVYVFKYM 199 (417)
Q Consensus 180 i~~~~~~g~~~~a~~~~~~m 199 (417)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 45555667777766666653
No 304
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=39.19 E-value=1.2e+02 Score=22.67 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
..+-.+.-++.+.|+ +++|.+..+.+.+.
T Consensus 79 d~LYyLAvg~yklgd--------Y~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 79 ECLYYLTIGCYKLGE--------YSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHTC--------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhh--------HHHHHHHHHHHHhh
Confidence 334444445555555 55555555555543
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.17 E-value=1.2e+02 Score=22.88 Aligned_cols=31 Identities=6% Similarity=0.099 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 373 (417)
.|.++++.+.+.+...+..|...-++.+...
T Consensus 44 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 44 SPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3444444444333333333333333333333
No 306
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=38.71 E-value=2.3e+02 Score=25.76 Aligned_cols=146 Identities=8% Similarity=0.018 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860 212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG----IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL 287 (417)
Q Consensus 212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 287 (417)
..-..++...|..|+... .++|.+.|++..+.+ ++||.... +...-.+ .-++-..+++.... .
T Consensus 198 ~lR~~~l~~ac~~g~~~c-----~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~~~--~~~~~~~l~~~y~~----s 264 (419)
T 3rjo_A 198 MLRSQLLLLACVHNYQPC-----VQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVGAQ--STEGWDFLYSKYQF----S 264 (419)
T ss_dssp HHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHHTT--SHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHhhCCCCCCCCCCccee--EEeeeeC--CHHHHHHHHHHHhc----C
Confidence 344567778888887443 788888998877643 55654322 1111112 23344555555555 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHH----HHHcCCCCCHH
Q 014860 288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-VPSSKSYNSLVSALALN-GEVEETVKNLWE----MIEKQRPVDFI 361 (417)
Q Consensus 288 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~----m~~~g~~p~~~ 361 (417)
.+..--..++.+++...+.+...++++......+ ++ ..... ++.+.+.. --.+.|++.+.+ +.+. +.++..
T Consensus 265 ~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~-qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~ 341 (419)
T 3rjo_A 265 LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKT-QEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSS 341 (419)
T ss_dssp CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCG-GGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCH
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCch-hHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCch
Confidence 5666778899999999999999999988877653 43 22232 33344432 234556655543 3332 223345
Q ss_pred HHHHHHHHHHHc
Q 014860 362 TYRTVLDEICRR 373 (417)
Q Consensus 362 ~~~~li~~~~~~ 373 (417)
.+..+|......
T Consensus 342 ~~~~~i~~~~~~ 353 (419)
T 3rjo_A 342 SIAHMVMGTTNQ 353 (419)
T ss_dssp HHHHHHHHTTTT
T ss_pred hHHHHHHHHhhc
Confidence 667777665543
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.55 E-value=1.3e+02 Score=23.00 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 014860 309 ARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV 358 (417)
Q Consensus 309 A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 358 (417)
+.++|..|...||--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777776655433 4455666666666777777777777666665555
No 308
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=38.44 E-value=1.4e+02 Score=23.38 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
+.+..+++.+.+ .|+.-|..--...+....+.|.+. ...+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~-~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLID-LDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 344555566655 565555544455555555444332 34555666666664
No 309
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=38.13 E-value=19 Score=30.24 Aligned_cols=214 Identities=11% Similarity=0.054 Sum_probs=102.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC---HHHHHHHHH
Q 014860 143 MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS---IRSYNILFT 219 (417)
Q Consensus 143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~---~~~~~~li~ 219 (417)
.+...++.|+++.+..+++.-...... .+ ..-.+.+...+..|+.+-+..+++ . |..++ ...++ .+.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~-~~g~t~L~~A~~~g~~~~v~~Ll~----~---g~~~~~~~~~g~t-~L~ 77 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQ-EE-EGGWTPLHNAVQMSREDIVELLLR----H---GADPVLRKKNGAT-PFL 77 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCC-CT-TTCCCHHHHHHHTTCHHHHHHHHH----T---TCCTTCCCTTCCC-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccc-cC-CCCCcHHHHHHHcCCHHHHHHHHH----c---CCCCcccCCCCCC-HHH
Confidence 445556788887666666542221111 11 112345666677888765555544 2 22222 22222 333
Q ss_pred HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC---------
Q 014860 220 AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL--NSMIKGYILSNHVNDALRIFHQMGVVYNYLP--------- 288 (417)
Q Consensus 220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------- 288 (417)
..+..|+ .+ +++.+.+.|..++.... .+.+...+..|+.+-+..+++.-.. .....
T Consensus 78 ~A~~~~~--------~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~ 144 (285)
T 1wdy_A 78 LAAIAGS--------VK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERL 144 (285)
T ss_dssp HHHHHTC--------HH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHT
T ss_pred HHHHcCC--------HH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhh
Confidence 3445566 44 44455556655543211 1234445667777666555544221 11110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H
Q 014860 289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS---KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT--Y 363 (417)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~ 363 (417)
+.... ..+...+..|+.+-+..+++. .|..++. .-.+.+.. .+..|+.....++++.+.+.|..++... -
T Consensus 145 ~~~g~-t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g 219 (285)
T 1wdy_A 145 RKGGA-TALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERG 219 (285)
T ss_dssp TCCCC-CHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTS
T ss_pred ccCCC-cHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCC
Confidence 00011 234445566776655555442 1433322 22233333 3445665555667777777776665421 1
Q ss_pred HHHHHHHHHcCCHhHHHHHHH
Q 014860 364 RTVLDEICRRGRAGEAMKLLK 384 (417)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~ 384 (417)
.+.+...++.|+.+-+..+++
T Consensus 220 ~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 220 KTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHh
Confidence 234455566777665555544
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.94 E-value=1.7e+02 Score=24.07 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 014860 307 KNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD 359 (417)
Q Consensus 307 ~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 359 (417)
+++.++|..|...||--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 466678888887766533 45567777777778888888888887777766663
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.90 E-value=1.1e+02 Score=23.26 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=40.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 349 WEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 349 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+. .+..|....|+.|.+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 4456678766654 34556667777778899999999988876 5777777777777766
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.83 E-value=1.2e+02 Score=22.52 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 351 MIEKQRPVDFITYRTVLDEICRRG-RAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 351 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+. .+..|...-|+.|.+.
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 444555555432 22334444444 45556666666666554 3555544455555444
No 313
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=36.43 E-value=1.4e+02 Score=26.71 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHGLCAQGR-TKNARELCDEMKRKGFVPSSK 326 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ 326 (417)
....+|.-|...|++++|.+.++++.. |+ ...+..+..++-+... .+.+-.++..+...|+-+...
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~-----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA-----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 345788889999999999999998864 43 2333333333333211 244566677777666543333
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.42 E-value=1.3e+02 Score=22.48 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 349 WEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 349 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+. .+..|....|+.|.+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 44667788877653 3455666667777889999999988876 5777777777777766
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.59 E-value=80 Score=24.42 Aligned_cols=73 Identities=12% Similarity=0.051 Sum_probs=48.2
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHhCCHHH
Q 014860 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT--PSFCGTEALYNTIIYFFAEARKLSR 191 (417)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~~li~~~~~~g~~~~ 191 (417)
.+.+++-+....++.|++.+..= ..++..+...+..-.|.++++.+.+. +.. .+..|.---+..+.+.|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~-is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLN-VGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGC-CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHCCCEEE
Confidence 45566666666667777776644 45566777777778888888888776 433 555555555667777776543
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.12 E-value=86 Score=23.65 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014860 343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRG 374 (417)
Q Consensus 343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 374 (417)
.|.++++.+.+.+...+..|...-++.+...|
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444444333333333333333333333
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.01 E-value=1.1e+02 Score=23.07 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 349 WEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 349 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+. .+..|...-|+.|.+.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 44556688887653 34455666666 7789999999998876 5777777777777766
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.53 E-value=1.1e+02 Score=22.58 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860 297 IHGLCAQG-RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 297 i~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 340 (417)
+..+...+ ..-.|.++++.+.+.+...+..|..--+..+.+.|-
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 33333333 344455555555554444444444444444444443
No 319
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.27 E-value=1.3e+02 Score=21.81 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 239 RCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 239 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
..+|+.+.+..+.|++..--.-|..+...++++.|.++.-.+..
T Consensus 46 ~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 46 ALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666666655554444445556677888888888877765
No 320
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.80 E-value=90 Score=19.95 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860 363 YRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~ 407 (417)
++-+++.++...-.++++..+.+..+.|.++..+|..-++.++++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344555555555566666666666666666666666655555554
No 321
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=33.17 E-value=4.2e+02 Score=27.30 Aligned_cols=158 Identities=11% Similarity=0.112 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG----IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 289 (417)
-..++...|..|+... .++|.+.|++..+.+ ++||... .+-+.+ .+.-++-..+++.... ..+
T Consensus 751 R~~il~~ac~~g~~~c-----~~~A~~~f~~~~~~~~~~~i~~~lr~---~Vyc~~-~~~~~~~~~l~~~y~~----s~~ 817 (967)
T 3se6_A 751 RSALLKLACDLNHAPC-----IQKAAELFSQWMESSGKLNIPTDVLK---IVYSVG-AQTTAGWNYLLEQYEL----SMS 817 (967)
T ss_dssp HHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHTTTCSCCCHHHHH---HHHHHH-TTSHHHHHHHHHHHHH----CSC
T ss_pred HHHHHHHHHhCCCHHH-----HHHHHHHHHHhhcCCCcccCChhhhh---HhHhhh-hccHHHHHHHHHHHhc----cCC
Confidence 3456777788887444 778888998887643 3444322 121122 2233334445555554 255
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH----HHHHcCCCCCHHHHH
Q 014860 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG-EVEETVKNLW----EMIEKQRPVDFITYR 364 (417)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~----~m~~~g~~p~~~~~~ 364 (417)
..--..++.+++...+.+...++++............... ++.+.+... -.+.|++.+. .+.+. +..+...+.
T Consensus 818 ~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~~i~~qd~~~-~~~~v~~n~~g~~~~w~f~~~nw~~i~~~-~~~~~~~~~ 895 (967)
T 3se6_A 818 SAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAA-LLHAIARRPKGQQLAWDFVRENWTHLLKK-FDLGSYDIR 895 (967)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHHHHHHHH-SCTTSHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCcCcHhHHHH-HHHHHHcChhHHHHHHHHHHHHHHHHHHH-hCCCchHHH
Confidence 6667889999999999999999998887654222333333 334444432 2444555554 23333 333445667
Q ss_pred HHHHHHHHc----CCHhHHHHHHHHH
Q 014860 365 TVLDEICRR----GRAGEAMKLLKEL 386 (417)
Q Consensus 365 ~li~~~~~~----g~~~~A~~~~~~m 386 (417)
.+|.+.... .+.++..++|+.-
T Consensus 896 ~~i~~~~~~~~t~~~l~~~~~f~~~~ 921 (967)
T 3se6_A 896 MIISGTTAHFSSKDKLQEVKLFFESL 921 (967)
T ss_dssp HHHHTTTTTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC
Confidence 777665443 2344455555443
No 322
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.90 E-value=1.7e+02 Score=22.68 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 014860 307 KNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI 361 (417)
Q Consensus 307 ~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 361 (417)
+++.++|..|...||--. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 336678888888776543 4556777777777888888888888888777666543
No 323
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.88 E-value=99 Score=23.87 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 014860 284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~ 340 (417)
.|+..+. --..++..+...+..-.|.++++.+.+. +...+..|.---|..+.+.|-
T Consensus 27 ~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 27 GGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred cCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 4444433 2334445555555555566666666554 444455554444455555553
No 324
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=32.65 E-value=1.7e+02 Score=22.66 Aligned_cols=94 Identities=5% Similarity=-0.087 Sum_probs=40.8
Q ss_pred CCHHHHHHHHhccC---ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860 102 FNNEELCNVMTLQE---DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT 178 (417)
Q Consensus 102 ~~~~~ll~~l~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 178 (417)
++...+..++...+ ..+.+..+|..+-....-..+..-|..++.. .+....+|..+-..+....+..-+..
T Consensus 44 I~~~El~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~------~~~~~~~F~~~D~d~~G~i~~~e~~~ 117 (191)
T 1y1x_A 44 ISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHF------ILSMREGFRKRDSSGDGRLDSNEVRA 117 (191)
T ss_dssp BCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH------HHHHHHHHHHHCTTSSSCBCHHHHHH
T ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH------HHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 44444444442221 2344555665553222223444444443332 24555666666444322234443333
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHh
Q 014860 179 IIYFFAEARKLSRAVYVFKYMKN 201 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m~~ 201 (417)
++..+...-.-+++..+|..+..
T Consensus 118 ~l~~~g~~~~~~~~~~~~~~~D~ 140 (191)
T 1y1x_A 118 ALLSSGYQVSEQTFQALMRKFDR 140 (191)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHCT
T ss_pred HHHHhCCCCCHHHHHHHHHHhCC
Confidence 33322211234556666666644
No 325
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=32.55 E-value=2.1e+02 Score=23.59 Aligned_cols=130 Identities=10% Similarity=0.036 Sum_probs=60.4
Q ss_pred CCHHHHHHHHhccC----ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860 102 FNNEELCNVMTLQE----DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYN 177 (417)
Q Consensus 102 ~~~~~ll~~l~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 177 (417)
++...+..++...+ ....+..+|..+-....-..+..-|..++..+......++...+|..+-..+....+..-+.
T Consensus 109 I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~ 188 (256)
T 2jul_A 109 VDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEML 188 (256)
T ss_dssp EEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHH
T ss_pred CCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 44555555543321 12345555655533222234444555555555444444555566665544332223444444
Q ss_pred HHHHHHHH-hC-----------CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860 178 TIIYFFAE-AR-----------KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ 244 (417)
Q Consensus 178 ~li~~~~~-~g-----------~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~ 244 (417)
.++..+.. .| .-+.+..+|+.+-..+ ....+|.-++..+.+... +-+++..|+.
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~-----dG~Is~~Ef~~~~~~~~~--------l~~~l~~~d~ 254 (256)
T 2jul_A 189 AIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ-----DGVVTIDEFLETCQKDEN--------IMNSMQLFEN 254 (256)
T ss_dssp HHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST-----TCSBCHHHHHHHHHHCSS--------HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC-----CCcEeHHHHHHHHHhCHH--------HHHHHHhhcc
Confidence 44433321 13 2345566666664431 123445556666666655 5555555554
No 326
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.16 E-value=2.8e+02 Score=26.49 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=38.8
Q ss_pred cCCCCCCHHHHHHHHhcc--CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHH
Q 014860 97 ELPPRFNNEELCNVMTLQ--EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEA 174 (417)
Q Consensus 97 ~~p~~~~~~~ll~~l~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 174 (417)
.+...--|..-+..+... .+...-......+..+-.+ -+.....-++..|.+.|..+.|.+++..+-..-. .+..
T Consensus 475 ~~~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl-~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l--~~g~ 551 (570)
T 3f3f_C 475 SLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPF-VTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML--SAHN 551 (570)
T ss_dssp TSCCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCC-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------
T ss_pred cccCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH--HCcc
Confidence 444555666666666532 2333334444444333332 2445566677777777777777777777766543 2334
Q ss_pred HHHHHHHHHHHhCCHHHH
Q 014860 175 LYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 175 ~~~~li~~~~~~g~~~~a 192 (417)
.+ ..+..|+|+|+++.+
T Consensus 552 ~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 552 II-ESIANFSRAGKYELV 568 (570)
T ss_dssp ------------------
T ss_pred HH-HHHHHHHHcCChhhc
Confidence 44 555667777776654
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.39 E-value=1.2e+02 Score=22.89 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 351 MIEKQRPVDFITYRTVLDEICRRG-RAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 351 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
|.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+. .+..|...-|+.|.+.
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 444555555432 22333333333 44456666666665544 3444544444555444
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.71 E-value=2.8e+02 Score=24.37 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=36.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHcCCCC
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAA-KMYQEMDDVVNQMLATPSF 169 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~ 169 (417)
..++.-|...|+.++|.+.++.+. .+.+ ........+..++-+. ...+.+..++..+.+.+..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~-~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA-SPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC-CGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-Cccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 346778888899999999998873 2222 1122222222233221 1334566677777776654
No 329
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.23 E-value=55 Score=25.67 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=10.2
Q ss_pred HHHHhcCCHHHHHHHHHHh
Q 014860 262 KGYILSNHVNDALRIFHQM 280 (417)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m 280 (417)
...+..|+.+-+..+++.-
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHcC
Confidence 3344566666555555543
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.10 E-value=1.2e+02 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 307 KNARELCDEMKRKGFVPSSKSYNSLVSALALNG 339 (417)
Q Consensus 307 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 339 (417)
-.|.++++.+.+.+...+..|.---|..+.+.|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444443444444433344444444
No 331
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.00 E-value=44 Score=24.46 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 014860 101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDV 159 (417)
Q Consensus 101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 159 (417)
...|.-.++..+.+++.+.|.+++++..... +.+.|..++..|-..=+++-++++
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFVe~g----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHHhccChHHHHHH
Confidence 3456667888888999999999999997543 889999999999888888776654
No 332
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.77 E-value=45 Score=27.12 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=76.9
Q ss_pred HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC---HH
Q 014860 217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFS--LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN---SF 291 (417)
Q Consensus 217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~ 291 (417)
.+...+..|+ .+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++. |..++ ..
T Consensus 12 ~L~~A~~~g~--------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~ 78 (241)
T 1k1a_A 12 PLHIAVVQGN--------LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-----GASPMALDRH 78 (241)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTT
T ss_pred HHHHHHHcCC--------HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-----CCCccccCCC
Confidence 3444566788 8888888887777776554321 12344555667887665555542 32222 21
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHH
Q 014860 292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVP---SSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT---YRT 365 (417)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ 365 (417)
.+ ..+...+..|+.+-+..+++.....++.+ |..-.+.| ...+..|+.+- ++.+.+.|..++... -.+
T Consensus 79 g~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t 152 (241)
T 1k1a_A 79 GQ-TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQET----VQLLLERGADIDAVDIKSGRS 152 (241)
T ss_dssp SC-CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCC
T ss_pred CC-CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHH----HHHHHHcCCCcccccccCCCc
Confidence 22 23444567788877766666543221122 22222233 33345566544 445555665544321 223
Q ss_pred HHHHHHHcCCHhHHHHHHH
Q 014860 366 VLDEICRRGRAGEAMKLLK 384 (417)
Q Consensus 366 li~~~~~~g~~~~A~~~~~ 384 (417)
.+...+..|+.+-+..+++
T Consensus 153 ~L~~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 153 PLIHAVENNSLSMVQLLLQ 171 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4445556777655444443
No 333
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.65 E-value=1.2e+02 Score=24.41 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=13.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHh
Q 014860 179 IIYFFAEARKLSRAVYVFKYM 199 (417)
Q Consensus 179 li~~~~~~g~~~~a~~~~~~m 199 (417)
.+...+..|+.+-+..+++.-
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~ 60 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAA 60 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 445556677877776666653
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.49 E-value=2e+02 Score=22.27 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=42.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHcCCCCCC--CHHHHHHHHH-H-----HHHhCCHHHHHHHHHHhHhC
Q 014860 140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG--TEALYNTIIY-F-----FAEARKLSRAVYVFKYMKNS 202 (417)
Q Consensus 140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~~ 202 (417)
|...+..+ ..|++-+|.++++..-+.... + ....|..||. . ..+.|+...|..++.+....
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~-~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGR-GNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCS-SSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33333344 449999999999998876544 4 4566777777 2 33579999999999988663
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.69 E-value=51 Score=20.64 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHC-CCCChhhHHHHHHHH-Hhh
Q 014860 377 GEAMKLLKELQNK-NLIDGYTYTKLLDVL-EDD 407 (417)
Q Consensus 377 ~~A~~~~~~m~~~-~~p~~~t~~~ll~~~-~~~ 407 (417)
++|.+.|.+|++. ++++.-||...++.+ +++
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 5777777777665 556777888888887 544
No 336
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.56 E-value=2.5e+02 Score=23.26 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG-RTKNARELCDEMKRKGFVPSSKSYN 329 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~ 329 (417)
.++..+-...+.++...|+.+ +...+..+.. .++..+-...+.++...| ....+...+..+.. .++..+-.
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~ 210 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRI 210 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHH
Confidence 355555555556666655533 2223333322 155555555555555554 12334444444433 23555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860 330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL 404 (417)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 404 (417)
..+.++.+.|+.. +...+..+.+. ++ .-...+.++.+.|. +++...+.++.+.. ++.......+..+
T Consensus 211 ~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~-~~~~~~~~~~~~l 277 (280)
T 1oyz_A 211 EAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKF-DDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcC-CCcHHHHHHHHHh
Confidence 5666666666533 33333333332 22 22344556666666 35555555555432 2333334444443
No 337
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.36 E-value=3.5e+02 Score=24.83 Aligned_cols=34 Identities=6% Similarity=0.071 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860 235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 268 (417)
.+.|+.++.+|.+.|..|....-..++.++-.-|
T Consensus 271 ~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 271 PDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 5666666666666666665555555555555444
No 338
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.75 E-value=2.6e+02 Score=23.16 Aligned_cols=209 Identities=17% Similarity=0.103 Sum_probs=114.8
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChh----HHHHHHHH-HHcCCCCCCCHHHHHHHHH
Q 014860 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQ----EMDDVVNQ-MLATPSFCGTEALYNTIIY 181 (417)
Q Consensus 107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----~a~~~~~~-m~~~~~~~~~~~~~~~li~ 181 (417)
.+..+...+... ++..+..+.. .++...-...+.+++..|... ....++.. +... ++..+-...+.
T Consensus 43 A~~~L~~~~~~~-~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d----~~~~vr~~a~~ 113 (280)
T 1oyz_A 43 SARVLQLRGGQD-AVRLAIEFCS----DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND----KSACVRATAIE 113 (280)
T ss_dssp HHHHHHHHCCHH-HHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC----SCHHHHHHHHH
T ss_pred HHHHHHccCCch-HHHHHHHHHc----CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC----CCHHHHHHHHH
Confidence 444555555433 4444444433 356666666777777766432 22333332 2232 66777777888
Q ss_pred HHHHhCC-----HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHH
Q 014860 182 FFAEARK-----LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFS 256 (417)
Q Consensus 182 ~~~~~g~-----~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 256 (417)
++.+.+. ...+...+..+.. .++..+-...+.++...|+ . .+...+.++.+ .++..+
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~------d~~~~vR~~a~~aL~~~~~--------~-~~~~~L~~~l~---d~~~~v 175 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAF------DKSTNVRRATAFAISVIND--------K-ATIPLLINLLK---DPNGDV 175 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTT------CSCHHHHHHHHHHHHTC------------CCHHHHHHHHT---CSSHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHhh------CCCHHHHHHHHHHHHhcCC--------H-HHHHHHHHHHc---CCCHHH
Confidence 8887763 3455555555544 3567776777788888776 2 23444444443 356666
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860 257 LNSMIKGYILSN-HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL 335 (417)
Q Consensus 257 ~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 335 (417)
-...+.++...| .-..+...+..+.. .++..+-...+.++.+.|+.+....+...+.. ++ .-...+.++
T Consensus 176 r~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL 245 (280)
T 1oyz_A 176 RNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAA 245 (280)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHH
Confidence 666666666665 12344444444433 26777777888888888876544444444433 23 123345566
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 014860 336 ALNGEVEETVKNLWEMIE 353 (417)
Q Consensus 336 ~~~g~~~~A~~~~~~m~~ 353 (417)
.+.|. ..+...+.++..
T Consensus 246 ~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 246 GELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHCC-GGGHHHHHHHHT
T ss_pred HhcCc-hhhhHHHHHHHh
Confidence 66665 344555555544
No 339
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=27.75 E-value=5e+02 Score=26.44 Aligned_cols=157 Identities=9% Similarity=0.050 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860 214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG----IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289 (417)
Q Consensus 214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 289 (417)
-..++...|..|+... .++|.+.|++..+.. ++||.... +-+.+- |.-++-..+++.... ..+
T Consensus 683 r~~~~~~ac~~g~~~c-----~~~a~~~f~~~~~~~~~~~i~~~lr~~---vy~~~~-g~~~~~~~l~~~y~~----~~~ 749 (897)
T 2xdt_A 683 RSQLLLLACVHNYQPC-----VQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVGA-QSTEGWDFLYSKYQF----SLS 749 (897)
T ss_dssp HHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHTTTCSCCCHHHHHH---HHHHHT-TSHHHHHHHHHHHTT----CCC
T ss_pred HHHHHHHHHhcCCHHH-----HHHHHHHHHHHhcCCCcCCCCcchhhh---EEEEec-CCHHHHHHHHHHHHc----cCC
Confidence 4456777888888444 778888998877642 44554321 111111 665555556666654 355
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH----HHHcCCCCCHHHH
Q 014860 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKG-FVPSSKSYNSLVSALAL-NGEVEETVKNLWE----MIEKQRPVDFITY 363 (417)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~----m~~~g~~p~~~~~ 363 (417)
..--..++.+++...+.....++++.....+ +++. ... .++.+.+. ..-.+.|++.+.+ +.+. ...+..++
T Consensus 750 ~~ek~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~q-d~~-~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~-~~~~~~~~ 826 (897)
T 2xdt_A 750 STEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQ-EFP-QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSI 826 (897)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGG-GHH-HHHHHHHTSTTTHHHHHHHHHHTHHHHHHH-HCTTCHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCcHH-HHH-HHHHHHHcChhhHHHHHHHHHHHHHHHHHH-hCCCchHH
Confidence 6667889999999999999999998887643 4332 222 23333332 2234555555543 3222 12233456
Q ss_pred HHHHHHHHHc----CCHhHHHHHHHHH
Q 014860 364 RTVLDEICRR----GRAGEAMKLLKEL 386 (417)
Q Consensus 364 ~~li~~~~~~----g~~~~A~~~~~~m 386 (417)
..+|...... .+.++..++|+..
T Consensus 827 ~~~i~~~~~~~~t~~~~~~~~~f~~~~ 853 (897)
T 2xdt_A 827 AHMVMGTTNQFSTRTRLEEVKGFFSSL 853 (897)
T ss_dssp HHHHHHTTTTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC
Confidence 6677665432 3344555555543
No 340
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.70 E-value=2.6e+02 Score=29.95 Aligned_cols=95 Identities=9% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHHHHHHccC---------------ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC
Q 014860 139 TYHIMTRKLGAAK---------------MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR 203 (417)
Q Consensus 139 ~~~~li~~~~~~~---------------~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 203 (417)
.=+.|+.++++.| ..++..+.|.++.+--.. .|....-..+..-..++++..|++++.++.+.
T Consensus 1236 ~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~-~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~- 1313 (1354)
T 3lxu_X 1236 QKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDA-NDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE- 1313 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCT-TSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccc-CCceeehhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3556777776533 344556666666665333 34333333344444789999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 204 NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 204 ~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
+|+...|..++..+...| |+-.....+++.-.
T Consensus 1314 ----k~~~~~~~~~~~~~~~l~---------w~h~~~~~~~~~~~ 1345 (1354)
T 3lxu_X 1314 ----KRTRDHFVELAAINGALG---------HEHIRTVINRMMIT 1345 (1354)
T ss_dssp ----TCCHHHHHHHHHHHHHHS---------CHHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHcC---------CHHHHHHHHhhhhh
Confidence 688899999998888877 67777777766543
No 341
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.56 E-value=2.1e+02 Score=22.07 Aligned_cols=54 Identities=9% Similarity=-0.043 Sum_probs=37.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHHc
Q 014860 301 CAQGRTKNARELCDEMKRKGFVP--SSKSYNSLVS-A-----LALNGEVEETVKNLWEMIEK 354 (417)
Q Consensus 301 ~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~~ 354 (417)
...|++-+|-+++++.-...-.+ ....|..||. . ..+.|+...|..++.+....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34488888888888887765455 4556666666 2 23468888888888877664
No 342
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.17 E-value=1.4e+02 Score=23.39 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 014860 235 METIRCLFKQMVNDGIEPDI 254 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~~ 254 (417)
.+.-.++.+.+.+.|..++.
T Consensus 51 ~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 51 DEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSSC
T ss_pred cchHHHHHHHHHHCCCCCCC
Confidence 55555566666666665543
No 343
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.47 E-value=4e+02 Score=24.81 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=48.5
Q ss_pred ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860 113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA 192 (417)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a 192 (417)
...+++.|+++-. +.|++--...|..-.+.+...|++++|-++-....+.- . .+..|.+.+-.+=..-|...-.
T Consensus 341 ~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~gi-L-Rt~~Ti~rFk~vp~~pgq~spl 414 (494)
T 1bpo_A 341 VLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGI-L-RTPDTIRRFQSVPAQPGQTSPL 414 (494)
T ss_dssp TTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGS-S-CSHHHHHHHTTSCCCTTSCCHH
T ss_pred ccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccc-c-cCHHHHHHHhcCCCCCCCCCHH
Confidence 3466777776653 44555566667777777777777777777766655432 2 4555554444433333444445
Q ss_pred HHHHHHhHhC
Q 014860 193 VYVFKYMKNS 202 (417)
Q Consensus 193 ~~~~~~m~~~ 202 (417)
+.+|..+.+.
T Consensus 415 L~YF~~Ll~~ 424 (494)
T 1bpo_A 415 LQYFGILLDQ 424 (494)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 5555555544
No 344
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=26.45 E-value=2.1e+02 Score=24.99 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH
Q 014860 256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR--TKNARELCDEMKR 318 (417)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~ 318 (417)
.|..++-++....-..+|..+.+.|.. ...|.. .++..++.... +....+.|+.+-.
T Consensus 77 ~f~~ll~~l~~~~~~~dA~~l~~A~kg---~Gtde~---~lieIL~tRs~~ql~~i~~~Y~~~~g 135 (321)
T 1n00_A 77 DFERLVLLWALDPAERDALLANEATKR---WTSSNQ---VLMEIACTRSANQLLHARQAYHARYK 135 (321)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSS---SCSSCH---HHHHHHHSSCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHcCChhHHHHHHHHHHhhc---cCCCHH---HHHHHHhcCCHHHHHHHHHHHHHHhC
Confidence 355555556554444556666666632 224433 34444444332 3344444554443
No 345
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.21 E-value=1e+02 Score=22.60 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 341 (417)
.++..+...+..-.|.++++.+.+.+...+..|.--.+..+.+.|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555555556777777777666556666665566666666543
No 346
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.90 E-value=2.7e+02 Score=26.57 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
...+.....+..+-+. .+..-...+++.|.+.|..+.|.++++.+-.+ .--+...| ..+..|+++|+
T Consensus 498 ~~gr~~IselLpr~Pl-~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k----~l~~g~~g-eAL~~f~rA~~ 564 (570)
T 3f3f_C 498 SAKKMVIAELLPHYPF-VTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ----MLSAHNII-ESIANFSRAGK 564 (570)
T ss_dssp HHHHHHHHHHGGGCCC-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----HHHCccHH-HHHHHHHHcCC
Confidence 3444455555554444 67778889999999999999999999999875 22233344 66777888888
No 347
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=24.97 E-value=4.8e+02 Score=25.24 Aligned_cols=179 Identities=5% Similarity=-0.038 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHhHhCCCCCCCCCHHHHHH----HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860 188 KLSRAVYVFKYMKNSRNLECRPSIRSYNI----LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG 263 (417)
Q Consensus 188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~----li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 263 (417)
+.+.|...|....+.. ..+...... +.......+. ..++...+....... .+.....-.+..
T Consensus 229 d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~e~~~r~ 294 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDV--------TDEQAKWRDDAIMRS--QSTSLIERRVRM 294 (618)
T ss_dssp CHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTC--------CHHHHHHHHHHHHTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCC--------ChHHHHHHHhccccC--CChHHHHHHHHH
Confidence 6788888888876541 223333222 3333333442 245555666554433 343334444445
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCCC-------
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK------------GFVPS------- 324 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------g~~p~------- 324 (417)
..+.|+++.|.+.|..|... .. ....-.--+-.++...|+.++|..+|..+-.. |..+.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~-~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~ 372 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPME-AK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP 372 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTT-GG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHCCCHHHHHHHHHHcccc-cc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCC
Confidence 56779999999999988652 11 12333344555677889999999888876532 21110
Q ss_pred -----HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860 325 -----SKS---YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE 385 (417)
Q Consensus 325 -----~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (417)
... --.-+..+...|....|...+..+... .+......+.......|..+.+......
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000 112234566778888887777776653 2333333444444566666666655443
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.70 E-value=94 Score=23.20 Aligned_cols=47 Identities=28% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860 295 YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341 (417)
Q Consensus 295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 341 (417)
.++..+...+..-.|.++++.+.+.+...+..|.--.|..+.+.|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555555555555777777776666566666665555666665543
No 349
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.33 E-value=4.2e+02 Score=24.33 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGV 282 (417)
Q Consensus 251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (417)
..+......++.. -.|+..++..+++.+..
T Consensus 191 ~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 191 VLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp ECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 3445555555544 34666666666665543
No 350
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.03 E-value=3.6e+02 Score=23.55 Aligned_cols=68 Identities=4% Similarity=-0.111 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-C-ChhhHHHHHHHHHhh
Q 014860 340 EVEETVKNLWEMIEKQRPVDFI--TYRTVLDEICRRGRAGEAMKLLKELQNKNL-I-DGYTYTKLLDVLEDD 407 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p-~~~t~~~ll~~~~~~ 407 (417)
+..+..++-..+..-.+.|... +...-|....+.+++..|-.+-+++.+.+. + -...-..++..|.+.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 3445555555555555555544 455666777889999999999999998876 3 344566677777665
No 351
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=23.97 E-value=1.2e+02 Score=22.96 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 014860 235 METIRCLFKQMV 246 (417)
Q Consensus 235 ~~~a~~~~~~m~ 246 (417)
.+++..++..+-
T Consensus 109 ~~~~~~~~~~~d 120 (172)
T 2znd_A 109 DQFHDILIRKFD 120 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 444555555543
No 352
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.92 E-value=1e+02 Score=24.27 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 014860 324 SSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA 376 (417)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 376 (417)
....++.++..++.-.-+++++.++++....|. .+..+|-.-++.+++..-+
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666653 5556666666666554433
No 353
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.75 E-value=2.2e+02 Score=20.61 Aligned_cols=45 Identities=7% Similarity=-0.077 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860 347 NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391 (417)
Q Consensus 347 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 391 (417)
+|+.+.+..+.|++..--.-+......++++.|.++...+.....
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~~ 92 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDHV 92 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSTH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCcH
Confidence 344444445544444333334455667788888888877776543
No 354
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.33 E-value=1.5e+02 Score=18.43 Aligned_cols=51 Identities=6% Similarity=0.115 Sum_probs=31.6
Q ss_pred CCCChhHHHHHHhcCCCCCCHHHHHHHH-hccCChhHHHHHHHHhhcCCCCCCC
Q 014860 84 PALDDTQFRCAVSELPPRFNNEELCNVM-TLQEDPLVCLELFNWASKQPRFRHD 136 (417)
Q Consensus 84 ~~~~~~~~~~~l~~~p~~~~~~~ll~~l-~~~~~~~~A~~~~~~~~~~~~~~~~ 136 (417)
+...+..+..+..-+|+ .....+-.+| ...|+.+.|++.+-.| ...++.|+
T Consensus 6 ~~~~ee~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m-~~~~~~~~ 57 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQM-GEEPSGPS 57 (59)
T ss_dssp SSSCHHHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHS-SCCCCSCC
T ss_pred CCCCHHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcC-cCCCCCCC
Confidence 33344555554444544 4556666666 5667899999988888 45555554
No 355
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.13 E-value=1.5e+02 Score=26.02 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH--HHHHHH----HHHcCCHhHHHHHH
Q 014860 311 ELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD-FITY--RTVLDE----ICRRGRAGEAMKLL 383 (417)
Q Consensus 311 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~--~~li~~----~~~~g~~~~A~~~~ 383 (417)
++++.+.+.|+.|...++..++..+.+.=.++.+.++++.+...|.... ...| .+++.. ....++.++.+.++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4555666778888888888888888888888899999999888765433 2222 222322 23356777777777
Q ss_pred HHHHH
Q 014860 384 KELQN 388 (417)
Q Consensus 384 ~~m~~ 388 (417)
+.+..
T Consensus 310 ~~~p~ 314 (345)
T 2qfz_A 310 QNLPT 314 (345)
T ss_dssp TSCSC
T ss_pred HcCCC
Confidence 65443
No 356
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.80 E-value=4.4e+02 Score=23.74 Aligned_cols=205 Identities=9% Similarity=-0.006 Sum_probs=108.9
Q ss_pred hccC--ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCCh--hHHHH--------HHHHH-HcCCCCCC---
Q 014860 112 TLQE--DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMY--QEMDD--------VVNQM-LATPSFCG--- 171 (417)
Q Consensus 112 ~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~--~~a~~--------~~~~m-~~~~~~~~--- 171 (417)
++.| .+..++++...+..+. +...+..++..+.. ...- .+... ++... .+.|....
T Consensus 119 a~ag~~~~~~~l~l~~yL~~E~----~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~~~~~ 194 (419)
T 3rjo_A 119 VSIGKLSIEKALDLSLYLKHET----EIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSV 194 (419)
T ss_dssp HHHTSSCHHHHHHHHGGGGGCC----SHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSCCSCH
T ss_pred HHcCCCCHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCCCchH
Confidence 4555 4778888888775443 55555555554431 1110 11211 22211 12232211
Q ss_pred -CHHHHHHHHHHHHHhCC---HHHHHHHHHHhHhCCCC-CCCCCHHH--HHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860 172 -TEALYNTIIYFFAEARK---LSRAVYVFKYMKNSRNL-ECRPSIRS--YNILFTAFLSRGKNTYINHVYMETIRCLFKQ 244 (417)
Q Consensus 172 -~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~-g~~p~~~~--~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~ 244 (417)
+...-..++...|..|+ .+.|.+.|+.....+.. .++||... |...+ +. .++-..+++.
T Consensus 195 ~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~------~~--------~~~~~~l~~~ 260 (419)
T 3rjo_A 195 SERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QS--------TEGWDFLYSK 260 (419)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHT------TS--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeee------CC--------HHHHHHHHHH
Confidence 23445577788888887 67788899988765321 36676543 22221 22 2333344444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH----HHHC
Q 014860 245 MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG-RTKNARELCDE----MKRK 319 (417)
Q Consensus 245 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~----m~~~ 319 (417)
.... .+..--..++.+++...+.+...++++.... ..+........ ++.+.+... ..+.|.+++.+ +.+.
T Consensus 261 y~~s---~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~-~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~ 335 (419)
T 3rjo_A 261 YQFS---LSSTEKSQIEFALCRTQNKEKLQWLLDESFK-GDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK 335 (419)
T ss_dssp HHHC---CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-TSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HhcC---CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhC-CCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 4543 4556677899999999999999999988765 33212222222 344444332 24455555542 3322
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 014860 320 GFVPSSKSYNSLVSALALNGE 340 (417)
Q Consensus 320 g~~p~~~~~~~li~~~~~~g~ 340 (417)
..++...+..+|......-.
T Consensus 336 -~~~~~~~~~~~i~~~~~~~~ 355 (419)
T 3rjo_A 336 -FELGSSSIAHMVMGTTNQFS 355 (419)
T ss_dssp -HCTTCHHHHHHHHHTTTTCC
T ss_pred -hCcCchhHHHHHHHHhhcCC
Confidence 12233567777776655433
No 357
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.77 E-value=1.4e+02 Score=21.96 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860 365 TVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD 407 (417)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~ 407 (417)
.++..+...+..-.|.++++.+.+.+. .+..|....|+.|.+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 344555555556667777777766655 4555555555666554
No 358
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.75 E-value=68 Score=27.21 Aligned_cols=132 Identities=6% Similarity=0.048 Sum_probs=58.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860 243 KQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP---NSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319 (417)
Q Consensus 243 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 319 (417)
+.+.+.|..++...-.+.+...+..|+.+-+..+++. |..+ |...++. +...+..|+.+-+..+++.
T Consensus 48 ~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~---- 117 (285)
T 3kea_A 48 CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS-----GLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKK---- 117 (285)
T ss_dssp HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT-----TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----CCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhc----
Confidence 3334445444332223344455666776655555543 2222 2222222 3334556666655544443
Q ss_pred CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860 320 GFVPSSK---SYNSLVSALALNGEVEETVKNLWEMIEKQRPV-DFITYRTVLDEICRRGRAGEAMKLLKELQN 388 (417)
Q Consensus 320 g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 388 (417)
|..++.. -+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+..+++.-.+
T Consensus 118 ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence 3333321 112344444556665443 3333444322 110122334444566776666656555433
No 359
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.70 E-value=4.4e+02 Score=23.63 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860 260 MIKGYILSNHVNDALRIFHQMGVVY---------------NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317 (417)
Q Consensus 260 li~~~~~~g~~~~a~~~~~~m~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 317 (417)
++..+....+.+++.+.++.+.... ....-......+...|...|+.++|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444555566666666666553210 011223344445555555666666666665554
No 360
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=21.65 E-value=2.8e+02 Score=21.43 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 014860 235 METIRCLFKQMVNDGIEPD 253 (417)
Q Consensus 235 ~~~a~~~~~~m~~~g~~p~ 253 (417)
.+-|.++++.+...|..|+
T Consensus 53 ~~HA~~l~~~i~~~gg~~~ 71 (173)
T 1s3q_A 53 LMHAMKMFDFVSERGGRVK 71 (173)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 5566667776666665554
No 361
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.60 E-value=1.5e+02 Score=26.16 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCC
Q 014860 257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG-RTKNARELCDEMKRKGFVPS 324 (417)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~ 324 (417)
...++.-|...|+.++|.+.++++.. ... ....+...+..++-+.. ..+.+..++..+.+.|+-+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~-p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS-PSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC-GGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-ccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 45678888888999999999988864 111 12223333333333221 23456677777776665533
No 362
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.53 E-value=87 Score=23.52 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhc
Q 014860 261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY--NSLVSALALN 338 (417)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~~li~~~~~~ 338 (417)
+...++.|+.+....+++.-.. .-...+...+ +.+...+..|+.+-+. .+.+.|..++.... .+.+...+..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSV-NCRDIEGRQS-TPLHFAAGYNRVSVVE----YLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTT-TCCCTTTTCC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHcCCC-CccccccCCC-CHHHHHHHcChHHHHH----HHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 3445567777777666653221 0111111112 2334445666655443 34445554432211 1223334455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHhHHHHHH
Q 014860 339 GEVEETVKNLWEMIEKQRPVDFITY--RTVLDEICRRGRAGEAMKLL 383 (417)
Q Consensus 339 g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~ 383 (417)
|+.+- .+.+.+.|..++.... .+.+...+..|+.+-+..++
T Consensus 86 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 86 GHYEV----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 66654 3444455555443211 12334445566665444443
No 363
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=21.53 E-value=3.2e+02 Score=21.96 Aligned_cols=103 Identities=9% Similarity=-0.030 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-h-----------
Q 014860 119 VCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE-A----------- 186 (417)
Q Consensus 119 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~----------- 186 (417)
.+..+|+.+-....-..+..-|..++..+.....-+....+|+.+-..+...-+..-+..++..... .
T Consensus 103 ~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~ 182 (229)
T 3dd4_A 103 YAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKED 182 (229)
T ss_dssp HHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchh
Confidence 3445666554333335677777777776665555566777787776554333455555555554421 1
Q ss_pred CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
-.-+.+..+|+.+-..+ ....+|.-++..+.+...
T Consensus 183 ~~~~~~~~~f~~~D~d~-----dG~Is~~EF~~~~~~~~~ 217 (229)
T 3dd4_A 183 APRQHVETFFQKMDKNK-----DGVVTIDEFIESCQKDEN 217 (229)
T ss_dssp -CCTHHHHHHHHHCSSC-----SSBCCHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHhcCCC-----CCcEeHHHHHHHHHhCHH
Confidence 12356677777775442 123445555555554433
No 364
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=21.52 E-value=4e+02 Score=23.11 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=53.8
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc--CChhHHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHHhCCHHH
Q 014860 118 LVCLELFNWASKQPRFRHDASTYHIMTRKLGAA--KMYQEMDDVVNQMLATPSFC----GTEALYNTIIYFFAEARKLSR 191 (417)
Q Consensus 118 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~----~~~~~~~~li~~~~~~g~~~~ 191 (417)
..|..+.+.| +. +-.|..+ +|..++.. .+..+..+.|..+-...... -...-|..++-++.....-.+
T Consensus 18 ~Da~~L~~A~-kG--~Gtde~~---lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~D 91 (320)
T 1yii_A 18 ADAEALRKAM-KG--MGTDEET---ILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFD 91 (320)
T ss_dssp HHHHHHHHHH-SS--SSCCHHH---HHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHh-cC--CCCCHHH---HHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHH
Confidence 4566666666 33 3356654 44444432 34444555566555443210 011245556666655555556
Q ss_pred HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860 192 AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND 248 (417)
Q Consensus 192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~ 248 (417)
|..+.+.|+ |.-.|.. .++..++..... .+....+.|.++-..
T Consensus 92 A~~L~~A~k-----g~Gtde~---~lieIL~~Rs~~------ql~~I~~aY~~~y~~ 134 (320)
T 1yii_A 92 AHALKHAIK-----GAGTNEK---VLTEILASRTPA------EVQNIKQVYMQEYEA 134 (320)
T ss_dssp HHHHHHHHS-----SSSCCHH---HHHHHHHHSCHH------HHHHHHHHHHHHHSS
T ss_pred HHHHHHHhc-----cCCCchH---HHhHHHhcCCHH------HHHHHHHHHHHhhCc
Confidence 666666663 3334543 444444444320 145555555555443
No 365
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=21.46 E-value=1.7e+02 Score=25.29 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860 276 IFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG 320 (417)
Q Consensus 276 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 320 (417)
++..+.+ .|+.|...++.-++..+++.=.++.+.++|+.+...|
T Consensus 176 L~~hL~~-~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 176 LHSHFSD-LNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHH-HTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-cCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 3444444 4666666666666666666556666666666666655
No 366
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=21.43 E-value=4e+02 Score=23.12 Aligned_cols=103 Identities=9% Similarity=0.037 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhhCCCC---
Q 014860 213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN--HVNDALRIFHQMGVVYNYL--- 287 (417)
Q Consensus 213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~--- 287 (417)
.|..++-+++...- ...|..+.+.|. |...|..+ ++..++... ++....+.|+.+-. ..+.
T Consensus 77 ~f~~ll~~l~~~~~--------~~dA~~l~~A~k--g~Gtde~~---lieIL~tRs~~ql~~i~~~Y~~~~g-~~Le~dI 142 (321)
T 1n00_A 77 DFERLVLLWALDPA--------ERDALLANEATK--RWTSSNQV---LMEIACTRSANQLLHARQAYHARYK-KSLEEDV 142 (321)
T ss_dssp HHHHHHHHHHSCHH--------HHHHHHHHHHHS--SSCSSCHH---HHHHHHSSCHHHHHHHHHHHHHHHS-SCHHHHH
T ss_pred hHHHHHHHHcCChh--------HHHHHHHHHHhh--ccCCCHHH---HHHHHhcCCHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 35555555654332 566777777774 33355444 444444332 23333333433321 1111
Q ss_pred ---CCHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860 288 ---PNSFSYDYLIHGLCAQGRT-----------KNARELCDEMKRKGFVPSSKSYNSLV 332 (417)
Q Consensus 288 ---~~~~~~~~li~~~~~~g~~-----------~~A~~l~~~m~~~g~~p~~~~~~~li 332 (417)
.+ ..|..++.++++..+. ..|..+++.|...+-. |.. +..++
T Consensus 143 ~~e~s-G~~~~~L~~lv~~~r~~~~~vd~~~~~~dA~~L~~A~~g~~gt-de~-lirIl 198 (321)
T 1n00_A 143 AHHTT-GDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAYS-DDD-VIRVL 198 (321)
T ss_dssp HHHCC-HHHHHHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHHHTTCTT-CHH-HHHHH
T ss_pred HhccC-cHHHHHHHHHHhcccCCCcCCChhhhHHHHHHHHHHhhCcCCC-cHH-HHHHH
Confidence 11 1344555555554432 3688888888764322 444 44333
No 367
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=21.35 E-value=3.4e+02 Score=22.24 Aligned_cols=143 Identities=8% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860 134 RHDASTYHIMTRKLGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR 212 (417)
Q Consensus 134 ~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~ 212 (417)
..+..-+..++..+...+ .-..+..+|..+...+....+..-|..++..+......++...+|+.+-..++ | ..+..
T Consensus 108 ~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~d-G-~I~~~ 185 (256)
T 2jul_A 108 LVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKD-G-CITKE 185 (256)
T ss_dssp SEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSS-S-CBCHH
T ss_pred cCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCC-C-cCcHH
Confidence 456666777766664333 33456777777765543223444454555444433445567777777654421 2 23444
Q ss_pred HHHHHHHHHHh-cCCcc---chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860 213 SYNILFTAFLS-RGKNT---YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQM 280 (417)
Q Consensus 213 ~~~~li~~~~~-~g~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (417)
-+..++..+.. .|... .......+.+..+|+.+-..| -...++.-++..+.+...+-++...|+.+
T Consensus 186 Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 186 EMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 44444444321 13100 000001455555665553222 12346666666666666666666666543
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.32 E-value=6.4e+02 Score=25.86 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=71.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-------------
Q 014860 105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG------------- 171 (417)
Q Consensus 105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------------- 171 (417)
..++..|...+.++.|.++..|.. .++..-=.+..+|...|++++|.+.|.+.-. |...+
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhc
Confidence 346667777888888888777763 2333323466778899999999999987642 11101
Q ss_pred ---------CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcC
Q 014860 172 ---------TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRG 225 (417)
Q Consensus 172 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g 225 (417)
...-|..++..+-+.+.++.++++-+...+.- . .-| ...|+.++++.+..|
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~--~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK--E-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--C-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--c-cCCccchHHHHHHHHHHHhhCC
Confidence 11257788888888888888888777776541 0 112 235666666665543
No 369
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.08 E-value=86 Score=21.12 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHC-CCCChhhHHHHHHHHHhh
Q 014860 376 AGEAMKLLKELQNK-NLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 376 ~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~ 407 (417)
.++|...|.+|+.. ++.+..||...+..++.+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~D 48 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccC
Confidence 45677777776654 445666777777666544
No 370
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.79 E-value=3.5e+02 Score=22.13 Aligned_cols=115 Identities=6% Similarity=0.062 Sum_probs=69.3
Q ss_pred HHHHHHHHh--ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH---H----------------ccCChhHHHHHHHH
Q 014860 104 NEELCNVMT--LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKL---G----------------AAKMYQEMDDVVNQ 162 (417)
Q Consensus 104 ~~~ll~~l~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~---~----------------~~~~~~~a~~~~~~ 162 (417)
+..+++++. +.+++.+-.++++++. ..++.-+... ...++.+ . +.--++.|..+|+.
T Consensus 20 f~~~c~aFR~~r~~dFrq~rdi~eall-~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~ 97 (235)
T 3bu8_A 20 FHEALRAFRGSRYGDFRQIRDIMQALL-VRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEM 97 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHH-hCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHH
Confidence 344555553 3445777888888875 3444444332 2222222 1 11235678999999
Q ss_pred HHcCCCCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860 163 MLATPSFCGTEA-------LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226 (417)
Q Consensus 163 m~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~ 226 (417)
+.+.-.. ++.. .-...+-.|.+.|.+++|.++|++.-.. .++..-...-+....+..+
T Consensus 98 I~~e~~l-~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~-----~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 98 IKTEFTL-TEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK-----DPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHTTC-CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-----CGGGHHHHHHHHHHHHHTC
T ss_pred HHHhhcC-cHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC-----CCCchHHHHHHHHHHhccC
Confidence 9887543 2211 2234566789999999999999999875 4455545555555555555
No 371
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.48 E-value=2.7e+02 Score=21.61 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=63.9
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh-cC
Q 014860 264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK---SYNSLVSALAL-NG 339 (417)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~li~~~~~-~g 339 (417)
.++.|+++....++..-.. ..+...-.+.+...+..|..+.-.++.+.+.+.|..+|.. -++.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSS----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhcCcc----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 4567887776666543211 1111111234455556677766667777777787766543 22333333322 23
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH--H-HHHHHHHHcCCH-hHHHHHHHHHHH-CCC
Q 014860 340 EVEETVKNLWEMIEKQRPVDFITY--R-TVLDEICRRGRA-GEAMKLLKELQN-KNL 391 (417)
Q Consensus 340 ~~~~A~~~~~~m~~~g~~p~~~~~--~-~li~~~~~~g~~-~~A~~~~~~m~~-~~~ 391 (417)
+.....++.+.+.+.|..++.... . +.+...+..|.. ..-..+++-+.+ .|.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga 145 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL 145 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence 455556777777887776654321 1 222222233332 334556666666 554
No 372
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=20.20 E-value=3.8e+02 Score=25.68 Aligned_cols=76 Identities=9% Similarity=0.186 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHhHHH----HHHHHHHHCCCCChhhH----H
Q 014860 332 VSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG-----RAGEAM----KLLKELQNKNLIDGYTY----T 398 (417)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~----~~~~~m~~~~~p~~~t~----~ 398 (417)
-+.|...-.+++..+++++++....+-|...|.+||..+...- -..+++ .+|..|++.++.+..+. +
T Consensus 456 qkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr 535 (603)
T 4b8b_A 456 QKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFR 535 (603)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHH
Confidence 3444445567788888888876644445667888887765431 233333 57888888888544444 6
Q ss_pred HHHHHHHhh
Q 014860 399 KLLDVLEDD 407 (417)
Q Consensus 399 ~ll~~~~~~ 407 (417)
.+++++.+.
T Consensus 536 ~ILeAlrkp 544 (603)
T 4b8b_A 536 IIMRFAKEP 544 (603)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHhCC
Confidence 666666554
No 373
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.14 E-value=2.9e+02 Score=21.00 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860 271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV 322 (417)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 322 (417)
+.+..+++.+.+ .|..-|..--...+....+.| .....+-.++...|+.
T Consensus 47 ~~i~~vl~~l~~-~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHE-HGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHH-TTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH-cCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 445555566655 555545444445555554433 1234555666666664
No 374
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.08 E-value=98 Score=20.15 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=23.5
Q ss_pred CHhHHHHHHHHHHHC-CCCChhhHHHHHHHHHhh
Q 014860 375 RAGEAMKLLKELQNK-NLIDGYTYTKLLDVLEDD 407 (417)
Q Consensus 375 ~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~ 407 (417)
..++|...|.+|... ++....+|...+..+..+
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~D 46 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIIND 46 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccC
Confidence 356788888877665 556777888888777655
Done!