Query 014861
Match_columns 417
No_of_seqs 138 out of 1458
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 1.1E-53 2.3E-58 423.7 28.6 370 29-407 59-465 (467)
2 KOG1304 Amino acid transporter 100.0 6E-52 1.3E-56 392.8 28.7 366 27-406 44-449 (449)
3 KOG1303 Amino acid transporter 100.0 1.3E-50 2.8E-55 390.6 31.5 384 15-408 23-436 (437)
4 PF01490 Aa_trans: Transmembra 100.0 2.3E-51 5E-56 404.7 -0.4 370 28-403 1-408 (409)
5 PLN03074 auxin influx permease 100.0 2.2E-46 4.9E-51 369.6 30.0 369 27-417 43-462 (473)
6 KOG1305 Amino acid transporter 100.0 3E-43 6.5E-48 338.0 25.7 372 26-409 2-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.3E-41 2.8E-46 304.0 6.5 374 24-414 111-522 (524)
8 COG0814 SdaC Amino acid permea 100.0 4.9E-33 1.1E-37 271.0 32.8 351 25-385 4-371 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.5E-23 5.5E-28 201.6 28.0 335 28-381 1-349 (394)
10 PRK09664 tryptophan permease T 99.9 1.9E-23 4.2E-28 200.3 26.1 338 27-380 6-358 (415)
11 PRK10483 tryptophan permease; 99.9 8.8E-23 1.9E-27 196.0 27.5 338 25-380 6-357 (414)
12 TIGR00837 araaP aromatic amino 99.9 6.7E-23 1.5E-27 200.0 20.7 328 35-381 2-343 (381)
13 PRK13629 threonine/serine tran 99.9 6E-21 1.3E-25 183.2 29.4 349 33-385 22-403 (443)
14 PRK15132 tyrosine transporter 99.9 7.8E-22 1.7E-26 190.3 23.3 327 30-377 3-343 (403)
15 TIGR00814 stp serine transport 99.9 2.5E-19 5.4E-24 173.5 26.4 343 33-382 6-364 (397)
16 PRK10655 potE putrescine trans 99.6 3.2E-12 7E-17 127.1 32.2 242 26-282 4-246 (438)
17 PRK10249 phenylalanine transpo 99.6 3.6E-12 7.7E-17 127.3 28.8 242 25-283 18-267 (458)
18 PRK10435 cadB lysine/cadaverin 99.6 1.8E-12 3.8E-17 128.7 26.4 244 25-284 2-246 (435)
19 PRK11021 putative transporter; 99.6 2.6E-11 5.7E-16 119.5 33.4 230 30-279 1-231 (410)
20 TIGR00905 2A0302 transporter, 99.5 1.4E-11 3E-16 123.7 30.4 244 26-282 5-255 (473)
21 PRK11387 S-methylmethionine tr 99.5 1.5E-11 3.2E-16 123.5 29.6 245 25-285 11-266 (471)
22 PRK10644 arginine:agmatin anti 99.5 1.8E-11 3.8E-16 122.1 29.8 243 25-283 5-249 (445)
23 PRK15049 L-asparagine permease 99.5 1.6E-11 3.4E-16 123.8 29.5 243 26-284 26-279 (499)
24 TIGR00906 2A0303 cationic amin 99.5 8.5E-12 1.8E-16 127.0 27.7 249 24-281 24-287 (557)
25 TIGR00930 2a30 K-Cl cotranspor 99.5 8.1E-12 1.8E-16 133.1 28.4 247 25-280 73-335 (953)
26 PRK11049 D-alanine/D-serine/gl 99.5 1.1E-11 2.3E-16 124.3 27.9 242 24-282 16-268 (469)
27 TIGR00909 2A0306 amino acid tr 99.5 4.2E-12 9.2E-17 126.0 24.7 290 27-330 2-306 (429)
28 KOG1287 Amino acid transporter 99.5 1.2E-12 2.6E-17 126.4 19.5 335 24-377 8-366 (479)
29 PRK10746 putative transport pr 99.5 2.6E-11 5.6E-16 121.1 28.9 243 25-284 7-259 (461)
30 TIGR01773 GABAperm gamma-amino 99.5 4.6E-11 1E-15 119.4 30.0 243 24-284 8-260 (452)
31 COG1113 AnsP Gamma-aminobutyra 99.5 5.9E-12 1.3E-16 119.8 21.7 340 25-383 10-373 (462)
32 TIGR00912 2A0309 spore germina 99.5 9.7E-12 2.1E-16 120.5 21.8 286 28-336 1-299 (359)
33 PRK10238 aromatic amino acid t 99.5 5.4E-11 1.2E-15 118.8 27.6 236 25-277 9-252 (456)
34 PRK10580 proY putative proline 99.5 1.9E-10 4.2E-15 115.0 30.9 239 25-280 6-254 (457)
35 TIGR03810 arg_ornith_anti argi 99.4 3.8E-10 8.3E-15 113.1 29.9 247 28-285 1-254 (468)
36 PRK10836 lysine transporter; P 99.4 4.6E-10 9.9E-15 113.2 29.6 244 25-284 12-264 (489)
37 TIGR00908 2A0305 ethanolamine 99.4 4.1E-10 9E-15 112.2 27.6 239 25-279 4-245 (442)
38 TIGR00911 2A0308 L-type amino 99.4 1.2E-10 2.6E-15 117.9 23.8 247 24-284 38-294 (501)
39 PRK11357 frlA putative fructos 99.4 2.2E-10 4.8E-15 114.2 24.9 239 25-281 5-251 (445)
40 TIGR00913 2A0310 amino acid pe 99.4 8.3E-10 1.8E-14 111.2 29.0 238 27-280 1-252 (478)
41 PRK10197 gamma-aminobutyrate t 99.4 1.5E-09 3.2E-14 108.1 29.4 274 39-330 3-293 (446)
42 PF03845 Spore_permease: Spore 99.3 5.4E-10 1.2E-14 106.4 22.3 284 29-336 1-295 (320)
43 PF13520 AA_permease_2: Amino 99.3 9.5E-10 2E-14 109.1 23.0 289 30-334 1-304 (426)
44 COG0531 PotE Amino acid transp 99.2 5.9E-09 1.3E-13 104.6 22.5 252 24-286 8-262 (466)
45 KOG1286 Amino acid transporter 99.1 2.2E-09 4.7E-14 107.8 16.6 302 24-333 26-351 (554)
46 COG0833 LysP Amino acid transp 99.1 2.3E-07 5E-12 90.8 27.7 295 25-334 41-357 (541)
47 TIGR03428 ureacarb_perm permea 99.1 3.4E-07 7.3E-12 92.1 30.0 252 24-285 9-273 (475)
48 PRK15238 inner membrane transp 98.9 2.9E-06 6.3E-11 85.9 30.3 239 26-281 5-267 (496)
49 PF00324 AA_permease: Amino ac 98.9 1.2E-08 2.6E-13 102.7 12.1 239 39-288 6-263 (478)
50 TIGR03813 put_Glu_GABA_T putat 98.9 2E-06 4.3E-11 86.6 27.2 243 29-285 2-254 (474)
51 TIGR00907 2A0304 amino acid pe 98.9 6.5E-06 1.4E-10 83.1 30.5 247 25-279 9-271 (482)
52 TIGR00910 2A0307_GadC glutamat 98.8 5.6E-06 1.2E-10 83.8 27.8 236 27-279 3-248 (507)
53 KOG3832 Predicted amino acid t 98.7 2.4E-07 5.2E-12 78.6 10.3 213 29-247 11-300 (319)
54 TIGR00800 ncs1 NCS1 nucleoside 98.6 5.6E-05 1.2E-09 75.3 28.0 234 94-335 76-329 (442)
55 KOG1289 Amino acid transporter 98.3 0.0017 3.7E-08 64.1 27.9 255 27-289 47-316 (550)
56 COG3949 Uncharacterized membra 98.3 0.0006 1.3E-08 63.0 23.3 138 34-184 7-147 (349)
57 PRK11375 allantoin permease; P 98.3 0.0025 5.3E-08 64.2 29.6 234 94-336 89-344 (484)
58 TIGR02119 panF sodium/pantothe 98.2 0.0036 7.7E-08 63.0 30.3 151 26-188 38-193 (471)
59 PRK09442 panF sodium/panthothe 98.1 0.018 3.9E-07 58.1 31.1 152 26-188 39-194 (483)
60 TIGR00813 sss transporter, SSS 98.0 0.0036 7.9E-08 61.7 25.6 149 27-187 2-151 (407)
61 COG0591 PutP Na+/proline sympo 98.0 0.0042 9.1E-08 62.7 26.1 149 26-185 36-188 (493)
62 TIGR02358 thia_cytX probable h 98.0 0.021 4.6E-07 55.8 28.6 308 33-381 8-318 (386)
63 PRK12488 acetate permease; Pro 97.9 0.03 6.4E-07 57.5 30.7 149 27-188 66-216 (549)
64 TIGR02711 symport_actP cation/ 97.9 0.013 2.8E-07 60.1 27.0 148 27-187 66-215 (549)
65 COG1457 CodB Purine-cytosine p 97.9 0.014 3E-07 57.1 25.3 257 95-380 82-345 (442)
66 PF00474 SSF: Sodium:solute sy 97.6 0.0007 1.5E-08 66.7 12.3 149 27-187 5-155 (406)
67 TIGR03648 Na_symport_lg probab 97.6 0.076 1.7E-06 54.6 27.4 150 26-187 30-180 (552)
68 PRK09395 actP acetate permease 97.6 0.12 2.7E-06 53.0 29.7 150 26-187 67-217 (551)
69 PRK11017 codB cytosine permeas 97.6 0.097 2.1E-06 51.5 27.1 253 94-380 71-326 (404)
70 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.064 1.4E-06 54.2 25.1 152 26-187 34-191 (487)
71 PRK10484 putative transporter; 97.5 0.14 3E-06 52.3 26.9 156 26-188 36-197 (523)
72 COG1953 FUI1 Cytosine/uracil/t 97.4 0.18 3.9E-06 49.8 27.2 234 93-336 102-358 (497)
73 PRK15419 proline:sodium sympor 97.3 0.19 4.1E-06 51.0 25.9 152 26-187 38-195 (502)
74 PF02554 CstA: Carbon starvati 97.2 0.0096 2.1E-07 56.3 13.6 185 30-246 52-237 (376)
75 TIGR00796 livcs branched-chain 97.1 0.22 4.8E-06 48.3 22.5 71 38-117 3-76 (378)
76 KOG1288 Amino acid transporter 97.0 0.01 2.2E-07 59.9 12.1 240 29-281 66-350 (945)
77 PF01566 Nramp: Natural resist 97.0 0.22 4.8E-06 48.2 21.3 227 95-336 43-288 (358)
78 TIGR00835 agcS amino acid carr 97.0 0.14 3.1E-06 50.2 19.7 147 27-185 44-198 (425)
79 KOG2083 Na+/K+ symporter [Inor 97.0 0.0054 1.2E-07 61.0 9.8 222 35-277 40-275 (643)
80 PF02133 Transp_cyt_pur: Perme 96.9 0.012 2.7E-07 58.6 12.5 241 27-282 6-258 (440)
81 COG0733 Na+-dependent transpor 96.5 0.88 1.9E-05 44.5 21.6 240 28-279 7-268 (439)
82 PF05525 Branch_AA_trans: Bran 96.3 0.82 1.8E-05 45.0 19.7 283 30-334 3-307 (427)
83 COG1914 MntH Mn2+ and Fe2+ tra 96.0 1.8 4E-05 42.4 26.2 136 30-179 17-153 (416)
84 PRK15015 carbon starvation pro 96.0 0.098 2.1E-06 53.2 11.9 101 33-137 86-187 (701)
85 COG1966 CstA Carbon starvation 95.9 0.09 2E-06 52.2 11.0 105 30-138 52-157 (575)
86 PRK00701 manganese transport p 95.7 2.4 5.3E-05 42.1 27.5 77 95-180 95-173 (439)
87 COG4147 DhlC Predicted symport 94.9 4.2 9.2E-05 40.1 20.1 179 93-282 103-293 (529)
88 PF05525 Branch_AA_trans: Bran 94.4 0.45 9.8E-06 46.7 11.1 117 53-180 222-338 (427)
89 TIGR00796 livcs branched-chain 94.2 0.46 1E-05 46.1 10.5 78 93-179 254-331 (378)
90 PF00209 SNF: Sodium:neurotran 93.9 8.4 0.00018 39.4 22.9 31 30-60 5-36 (523)
91 PRK15433 branched-chain amino 93.1 6 0.00013 39.1 16.1 280 31-333 9-310 (439)
92 KOG2082 K+/Cl- cotransporter K 93.0 1.1 2.3E-05 46.4 11.0 100 35-138 120-222 (1075)
93 PF01235 Na_Ala_symp: Sodium:a 93.0 9.8 0.00021 37.4 20.7 85 24-109 13-103 (416)
94 KOG2349 Na+:iodide/myo-inosito 92.2 4.9 0.00011 41.0 14.6 239 27-286 44-303 (585)
95 COG1114 BrnQ Branched-chain am 89.9 4.2 9E-05 39.5 10.9 119 55-184 226-344 (431)
96 PRK15433 branched-chain amino 87.5 5.2 0.00011 39.5 10.2 113 55-181 228-342 (439)
97 PHA02764 hypothetical protein; 86.7 2 4.3E-05 40.0 6.3 90 27-121 11-103 (399)
98 TIGR00842 bcct choline/carniti 81.2 55 0.0012 32.7 14.3 162 26-188 33-218 (453)
99 COG1292 BetT Choline-glycine b 80.7 28 0.00061 35.1 11.9 160 24-187 82-267 (537)
100 TIGR01197 nramp NRAMP (natural 80.7 60 0.0013 31.8 25.3 75 95-178 65-141 (390)
101 COG4145 PanF Na+/panthothenate 79.9 60 0.0013 31.4 25.1 146 27-182 38-186 (473)
102 KOG2466 Uridine permease/thiam 79.2 73 0.0016 31.9 18.5 294 25-335 51-377 (572)
103 PF02028 BCCT: BCCT family tra 76.9 88 0.0019 31.6 28.7 164 25-190 70-257 (485)
104 PRK09928 choline transport pro 76.7 89 0.0019 32.9 14.6 166 24-190 87-274 (679)
105 PRK09950 putative transporter; 76.6 91 0.002 31.7 15.4 164 26-190 80-267 (506)
106 COG5249 RER1 Golgi protein inv 68.0 13 0.00029 30.1 5.0 62 30-105 117-178 (180)
107 PRK10263 DNA translocase FtsK; 67.2 1.1E+02 0.0023 34.8 13.1 24 260-283 23-46 (1355)
108 PRK03356 L-carnitine/gamma-but 64.1 1.7E+02 0.0037 29.7 15.0 163 26-189 82-269 (504)
109 KOG1289 Amino acid transporter 57.2 2.3E+02 0.005 28.9 13.0 47 95-142 326-372 (550)
110 KOG3660 Sodium-neurotransmitte 53.2 2.9E+02 0.0064 29.0 16.4 105 30-144 38-147 (629)
111 PRK13183 psbN photosystem II r 45.7 25 0.00053 22.6 2.5 29 260-288 6-34 (46)
112 CHL00020 psbN photosystem II p 45.2 21 0.00046 22.5 2.1 28 261-288 4-31 (43)
113 COG1114 BrnQ Branched-chain am 43.5 3.4E+02 0.0073 26.8 18.8 71 30-109 5-79 (431)
114 PF00689 Cation_ATPase_C: Cati 43.3 35 0.00076 29.0 4.1 30 345-374 126-155 (182)
115 PF02468 PsbN: Photosystem II 42.7 26 0.00057 22.2 2.2 28 261-288 4-31 (43)
116 COG3851 UhpB Signal transducti 41.8 1.2E+02 0.0025 29.3 7.3 19 367-385 135-153 (497)
117 TIGR00906 2A0303 cationic amin 35.1 5.2E+02 0.011 26.6 16.3 46 96-142 301-346 (557)
118 TIGR00909 2A0306 amino acid tr 31.6 5E+02 0.011 25.4 12.7 47 95-142 265-311 (429)
119 PF02028 BCCT: BCCT family tra 30.2 2.7E+02 0.0058 28.2 8.4 60 125-184 402-465 (485)
120 KOG2082 K+/Cl- cotransporter K 28.7 3.8E+02 0.0083 28.7 9.0 95 222-322 412-522 (1075)
121 cd08765 Cyt_b561_CYBRD1 Verteb 27.9 2.9E+02 0.0063 23.1 6.9 67 257-325 45-111 (153)
122 PF13491 DUF4117: Domain of un 27.2 3.7E+02 0.008 22.4 11.8 22 260-281 5-26 (171)
123 PF04835 Pox_A9: A9 protein co 26.4 1.1E+02 0.0024 20.4 3.2 31 260-290 23-53 (54)
124 PF05915 DUF872: Eukaryotic pr 22.9 2.2E+02 0.0048 22.4 5.1 25 30-54 39-63 (115)
125 COG5264 VTC1 Vacuolar transpor 22.1 1.7E+02 0.0038 23.2 4.2 40 42-84 46-85 (126)
126 PLN02680 carbon-monoxide oxyge 20.3 6.4E+02 0.014 22.7 11.1 66 258-325 78-143 (232)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-53 Score=423.65 Aligned_cols=370 Identities=16% Similarity=0.234 Sum_probs=304.7
Q ss_pred CCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcc
Q 014861 29 NAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKL 108 (417)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 108 (417)
.+|..++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.+++++ .+ ..+|+|++++++|| +
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~-~ 134 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP-W 134 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-H
Confidence 46779999999999999999999999999999999999999999999999999998774 23 34999999999997 6
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCc----ccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSC----KEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~----~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
|++++++.+.+.++|+|++|+++.+|.++.+++...... ...++..+.++..++++|++++|++++++++|.+++.
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~ 214 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence 779999999999999999999999999998886432110 1122334455667789999999999999999999998
Q ss_pred HHHHHHHHHhhhcccccCCCCccc---cC---CCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCc
Q 014861 185 MSLSYSTIAWVVPLEKGVEPDVDY---SY---NAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 258 (417)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~ 258 (417)
+.+..++.++++.+.++..++.+. .. ++........+++.++|+++|||.||.+++++++|| |||+++|+
T Consensus 215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~ 290 (467)
T PTZ00206 215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKF 290 (467)
T ss_pred HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHH
Confidence 666555444445554443222110 00 111111223468899999999999999999999999 77777778
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCC-CCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhhc
Q 014861 259 WKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTL-EKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQL 337 (417)
Q Consensus 259 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~~ 337 (417)
.+++..++.+++++|.++|++||+.||+++++|+++|+ |.++....++++.+.+.++.+||++.+|+|+.+++.+..+.
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~ 370 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA 370 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Confidence 79999999999999999999999999999999999999 55677788899999999999999999999999999875443
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH--------------------------HHHHHH
Q 014861 338 KFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY--------------------------FCIVLG 391 (417)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~--------------------------~~~~~g 391 (417)
+ +.++++|...+..+++.+.++|+.+|+++.+++++||+++++++|+ .++++|
T Consensus 371 ~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~G 449 (467)
T PTZ00206 371 R-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITG 449 (467)
T ss_pred c-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHH
Confidence 2 2244556666777777889999999999999999999999988877 577899
Q ss_pred HHHHHHHhHHHHHHHH
Q 014861 392 VLLMILAPIGGLRSII 407 (417)
Q Consensus 392 ~~~~v~g~~~si~~l~ 407 (417)
++..+.|||.+|++.+
T Consensus 450 v~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 450 VIAIVFGTGATIWGVT 465 (467)
T ss_pred hheEEecchhHhhHHh
Confidence 9999999999999875
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-52 Score=392.81 Aligned_cols=366 Identities=20% Similarity=0.291 Sum_probs=324.3
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchh---cCCcccCcHHHHHHhh
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEM---VPGKRFDRYHELGQGA 103 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y~~l~~~~ 103 (417)
++..|..++..|+.|.++|+|+|++|++|+++|++.|.+..++.+.++.|+++.+.+|... +.+....+|++.+|.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999998642 2222246777777655
Q ss_pred c----------CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCc
Q 014861 104 F----------GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFN 173 (417)
Q Consensus 104 ~----------G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~ 173 (417)
+ || ++|.+++..+++.++|.|++|++++++.++++.+... ...++.+.++.+.....+|++++||++
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~--~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS--PGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 4 55 5679999999999999999999999999999998432 346888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCC
Q 014861 174 SISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKP 253 (417)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~ 253 (417)
.+.+.|.++.++.++.+++++++.+.... +.++.+...++.++...+|+.+|||+|+..+.|+.++| |+|
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P 270 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKP 270 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cCh
Confidence 99999999999888877777777665432 11223344568899999999999999999999999999 888
Q ss_pred CCCCc-chHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 014861 254 SKGPM-WKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETF 332 (417)
Q Consensus 254 ~~~~~-~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~ 332 (417)
++++- ..++..++.+++++|..+|++||+.|||++++.+++|+|+ +++...+++++++.+..+||++++|..+++|+.
T Consensus 271 ~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 271 QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG 349 (449)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh
Confidence 87542 2899999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HhhhcCCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH--------------------------H
Q 014861 333 LVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY--------------------------F 386 (417)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~--------------------------~ 386 (417)
+.++-+++++++.....|..+++++..+|..+|+++.+++++||+++++++++ +
T Consensus 350 i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~ 429 (449)
T KOG1304|consen 350 IRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIV 429 (449)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHH
Confidence 88776666677889999999999999999999999999999999999999988 8
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 014861 387 CIVLGVLLMILAPIGGLRSI 406 (417)
Q Consensus 387 ~~~~g~~~~v~g~~~si~~l 406 (417)
++++|++..+.|||.|+.++
T Consensus 430 l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 430 LIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHhhhhhcC
Confidence 89999999999999999864
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=390.57 Aligned_cols=384 Identities=44% Similarity=0.793 Sum_probs=331.2
Q ss_pred hhhccccccccccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchh---cCCc
Q 014861 15 QKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEM---VPGK 91 (417)
Q Consensus 15 ~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~---~~~~ 91 (417)
+.+.+++++..++|+.|++++.++.+|.++|+|+|++||++++.||+.|+++++..++++.||..+|.+|.+. .+++
T Consensus 23 ~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~ 102 (437)
T KOG1303|consen 23 KSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK 102 (437)
T ss_pred ccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 3455566777788999999999999999999999999999999999999999999999999999999887654 3455
Q ss_pred ccCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCC
Q 014861 92 RFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPN 171 (417)
Q Consensus 92 ~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 171 (417)
|+.+|.|+++++||++. ++++..++.+.++++|+.|++..+|.++.+.+.....+...+.+.|.++++++.+|++++||
T Consensus 103 r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 103 RRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPN 181 (437)
T ss_pred cCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCC
Confidence 67789999999999865 89999999999999999999999999999998876543245578999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcccccCCCC-ccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCC
Q 014861 172 FNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPD-VDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTP 250 (417)
Q Consensus 172 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 250 (417)
++.+++.|..+.++++.+..+.+..++.++.... .+.+.+.... .... ++++|++.|+|++|..+|++|.+|
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~--f~a~g~iaFaf~gH~v~peIq~tM---- 254 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGT-IPTV--FTALGIIAFAYGGHAVLPEIQHTM---- 254 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCC-Ccch--hhhhhheeeeecCCeeeeehHhhc----
Confidence 9999999999999998888877777777664331 1111111111 1111 899999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHH
Q 014861 251 EKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIE 330 (417)
Q Consensus 251 ~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~ 330 (417)
|+|++ ++|++..++.+++.+|+.++++||++|||+++||++.|++++.|....+++++.+|++.+++....|..+.+|
T Consensus 255 k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E 332 (437)
T KOG1303|consen 255 KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVE 332 (437)
T ss_pred CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHH
Confidence 77776 5699999999999999999999999999999999999997668999999999999999999999999999999
Q ss_pred HHHhhhcCC-C-hhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH-----------------------
Q 014861 331 TFLVKQLKF-T-PSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY----------------------- 385 (417)
Q Consensus 331 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~----------------------- 385 (417)
++...+.+. . +....|.+.|+.+++.+.++|..+|.|+++++++||....|++|+
T Consensus 333 ~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~ 412 (437)
T KOG1303|consen 333 KLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNW 412 (437)
T ss_pred HHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 999865431 1 244689999999999999999999999999999999999888877
Q ss_pred HH-HHHHHHHHHHHhHHHHHHHHH
Q 014861 386 FC-IVLGVLLMILAPIGGLRSIIM 408 (417)
Q Consensus 386 ~~-~~~g~~~~v~g~~~si~~l~~ 408 (417)
.+ .++|+++++....+++++++.
T Consensus 413 ~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 413 VIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHhh
Confidence 33 677888888888888887765
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.3e-51 Score=404.69 Aligned_cols=370 Identities=28% Similarity=0.496 Sum_probs=316.6
Q ss_pred CCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcC-CcccCcHHHHHHhhcCC
Q 014861 28 RNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVP-GKRFDRYHELGQGAFGD 106 (417)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~-~~~~~~y~~l~~~~~G~ 106 (417)
+|.|.+++.++++|+++|+|+|++|++|+++|+++|++++++++.++.+|.+++.|+++..+ +++..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987543 34567999999999998
Q ss_pred cccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 014861 107 KLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMS 186 (417)
Q Consensus 107 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 186 (417)
+ +++++++++.+.++|.+++|++..+|.++++.+...+. ...++..+.++..++++|++++|+++.+++.|.++.++.
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc-ccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 5 56999999999999999999999999999998775422 246778888889999999999999999999999999976
Q ss_pred HHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCC-CCcchHHHHH
Q 014861 187 LSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSK-GPMWKGVVVA 265 (417)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~-~~~~~~~~~a 265 (417)
+.++.+.+.........++.+...++.....++.+++.++|+++|||.||+++|++++|| |||++ +|++++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~s 234 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSIS 234 (409)
T ss_pred ceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeeeh
Confidence 653222222222222222222222222345677899999999999999999999999999 77776 5677999999
Q ss_pred HHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhh--------c
Q 014861 266 YIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQ--------L 337 (417)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~--------~ 337 (417)
+.+++++|+++|+.||++||+++++|+++|++++++...++++++.++++.+||++.+|.|+.+++.+.++ +
T Consensus 235 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~ 314 (409)
T PF01490_consen 235 MIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK 314 (409)
T ss_pred hhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc
Confidence 99999999999999999999999999999999888899999999999999999999999999999998753 2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH----------------------------HHHH
Q 014861 338 KFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY----------------------------FCIV 389 (417)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~----------------------------~~~~ 389 (417)
+.+..+++|...|+.+++.++++|+.+|+++++++++||+++.+++|+ .+++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (409)
T PF01490_consen 315 NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIV 394 (409)
T ss_pred cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEE
Confidence 234456789999999999999999999999999999999999988877 3456
Q ss_pred HHHHHHHHHhHHHH
Q 014861 390 LGVLLMILAPIGGL 403 (417)
Q Consensus 390 ~g~~~~v~g~~~si 403 (417)
+|++.++.|+|.+|
T Consensus 395 ~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 395 FGVVLMVFGTYQSI 408 (409)
T ss_pred EeeehhHHhHHHHc
Confidence 78888888888775
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.2e-46 Score=369.62 Aligned_cols=369 Identities=20% Similarity=0.305 Sum_probs=304.2
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchh----cCCcc------cCcH
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEM----VPGKR------FDRY 96 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~----~~~~~------~~~y 96 (417)
.++.+..++.+++.+..+|.|+|+||++|+++||++|++.+++.++++.||.+++.+++.. ++... ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4468889999999999999999999999999999999999999999999999999886321 21111 1368
Q ss_pred HHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhH
Q 014861 97 HELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSIS 176 (417)
Q Consensus 97 ~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~ 176 (417)
.|+++..+||+++ .+..+...+++++.|+.|++..++.+..+- ...+.+.|++++.++.+|++++|++++++
T Consensus 123 ~e~~~~~~G~~~~-~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~ 194 (473)
T PLN03074 123 FEVLDGLLGPYWK-NVGLAFNCTFLLFGSVIQLIACASNIYYIN-------DNLDKRTWTYIFGACCATTVFIPSFHNYR 194 (473)
T ss_pred HHHHHHhcChhHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------CCcCCCeEEeehHHHHHHHHHccCHHHHH
Confidence 9999999998654 778888889999999999998787665541 24677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCC
Q 014861 177 VVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 256 (417)
Q Consensus 177 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~ 256 (417)
++|.+++.+++.....++...+.++..++.++ ..+.+...++.++++++|||++|..+|++++|| |||+++
T Consensus 195 ~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F 265 (473)
T PLN03074 195 IWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKF 265 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhcc
Confidence 99999988655433333334443433332221 123456778888899999999999999999999 889987
Q ss_pred CcchHHHHHHHHHHHHHHhHhhhhhhcccCCChH--HHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHh
Q 014861 257 PMWKGVVVAYIIVAICYFPVALVGYYIFGNTVED--NILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLV 334 (417)
Q Consensus 257 ~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~ 334 (417)
+ +...++....+++|+.+|+.||+.|||++++ +.+.|+|++.+ ..+++++++++++.+||++.+|..+..|+...
T Consensus 266 ~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~ 342 (473)
T PLN03074 266 K--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIG 342 (473)
T ss_pred c--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 7 8888999999999999999999999999764 66777986544 57899999999999999999999999998875
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH-----------------------------
Q 014861 335 KQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY----------------------------- 385 (417)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~----------------------------- 385 (417)
.+ ..++...|...|+.++++++++|..+|+|+++++++||+++++++|+
T Consensus 343 ~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~ 420 (473)
T PLN03074 343 VH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPS 420 (473)
T ss_pred cc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCc
Confidence 43 33456789999999999999999999999999999999999877766
Q ss_pred ---------HHHH-HHHHHHHHHhHHHHHHHHHhcccccCCC
Q 014861 386 ---------FCIV-LGVLLMILAPIGGLRSIIMSAKNYEFFS 417 (417)
Q Consensus 386 ---------~~~~-~g~~~~v~g~~~si~~l~~~~~~~~~~~ 417 (417)
.+++ .+++..+.|+|.|++++++|+++|++|+
T Consensus 421 ~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 421 WTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred cceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 2243 3555578999999999999999999885
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-43 Score=337.99 Aligned_cols=372 Identities=22% Similarity=0.353 Sum_probs=312.6
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
.+++.|.+.+++|+.|+++|+|++++|++|++.|++.|++++.+++.++.++.+.+.+++.+. +.+ +|++++++.+|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~--ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GER--TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCC--CHHHHHHHHcC
Confidence 356779999999999999999999999999999999999999999999999999999998744 333 99999999999
Q ss_pred CcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcc----cccchh-hHHHHHHHHHHHhhCCCCchhHHHHH
Q 014861 106 DKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCK----EIKTSY-WIMIFAAIHFVLSHLPNFNSISVVSL 180 (417)
Q Consensus 106 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~----~~~~~~-~~~i~~~~~~pl~~~~~~~~l~~~s~ 180 (417)
+ .|+....+...+...| |++|+++++|.++.........+. +.+++. |.+....+++|+++.|+++++++.|.
T Consensus 79 ~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 79 K-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA 156 (411)
T ss_pred C-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 7 6766666666666666 699999999999966655442111 123444 57778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccC-CCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcc
Q 014861 181 AAAVMSLSYSTIAWVVPLEKGV-EPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 259 (417)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 259 (417)
++..+.+.++.++++..+.... .+...+ ..+....+.+.+.++|+++|||.||+|..++++|| |||+++++.
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~ 229 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSY---LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQ 229 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccc---ccCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHH
Confidence 9999888777777666665332 111111 11122233789999999999999999999999999 899999999
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHH------HHHHHHHHHHHHHhhcccccccHHHHHHHHH
Q 014861 260 KGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWI------VAAANLFVVVHVIGSYQIFAMPVFDMIETFL 333 (417)
Q Consensus 260 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~------~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~ 333 (417)
++...+...+.++|..+|.+||+.|||++.+|++.++++.+.. ....|..+.+++...+|+..+|+|..+++.+
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~ 309 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELL 309 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 9999999999999999999999999999999999999865433 4689999999999999999999999998888
Q ss_pred hhhcC--CChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH---------------------HHHHH
Q 014861 334 VKQLK--FTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY---------------------FCIVL 390 (417)
Q Consensus 334 ~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~---------------------~~~~~ 390 (417)
.+.+. +..++.++++.+..++....++|+.+|+++.+++++||+++..++|+ .+..+
T Consensus 310 ~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~~~~~~~~~~~ 389 (411)
T KOG1305|consen 310 FPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKKKSREPLGALIFLIL 389 (411)
T ss_pred cccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeeccccccchHHHHHHHH
Confidence 76542 23567888999999999999999999999999999999999888877 77888
Q ss_pred HHHHHHHHhHHHHHHHHHh
Q 014861 391 GVLLMILAPIGGLRSIIMS 409 (417)
Q Consensus 391 g~~~~v~g~~~si~~l~~~ 409 (417)
++...+.|+..-+.++..+
T Consensus 390 ~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 390 GVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888899998888888765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-41 Score=304.05 Aligned_cols=374 Identities=21% Similarity=0.274 Sum_probs=321.0
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCc-----ccCcHHH
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGK-----RFDRYHE 98 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~-----~~~~y~~ 98 (417)
++.+.+.+.+++..|++|++-|-=+++||++....|+ +++..++.++.++.||+.++++|.....+. .+++|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 3456789999999999999999999999999999887 599999999999999999999996422211 1689999
Q ss_pred HHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHH
Q 014861 99 LGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVV 178 (417)
Q Consensus 99 l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~ 178 (417)
++...++|+.|-..+.+.+.+.+..+|+.|.++.+|.++..++.. ..+++-|+++..+.++|..++|+++-.+..
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~l 264 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----SVDKASWMMITSASLLPCSFLKDLKIVSRL 264 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----CccccchhhhhhHHHhhhHHHHHHHHHHHH
Confidence 999999999997788999999999999999999999999987653 477899999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCc
Q 014861 179 SLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 258 (417)
Q Consensus 179 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~ 258 (417)
|.++.+.-++.=.+++.||.... .++.++......+..+++.++|+++|+|..|...|++...| +||++++
T Consensus 265 Sf~ct~sH~viN~i~v~YCLs~~----~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn- 335 (524)
T KOG4303|consen 265 SFFCTISHLVINLIMVLYCLSFV----SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN- 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe-
Confidence 88888865554455556666442 23333333334566788899999999999999999999999 8999987
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhhcC
Q 014861 259 WKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLK 338 (417)
Q Consensus 259 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~~~ 338 (417)
..+.++=+...++-..+|..||++|++++++.|.+|+|+ +-...+.+++.++..+.|||+-.+...+.+|+.++....
T Consensus 336 -~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p 413 (524)
T KOG4303|consen 336 -VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYP 413 (524)
T ss_pred -eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCC
Confidence 788899999999999999999999999999999999996 567889999999999999999999999999988764321
Q ss_pred -C---------ChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH-----------------------
Q 014861 339 -F---------TPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY----------------------- 385 (417)
Q Consensus 339 -~---------~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~----------------------- 385 (417)
. ..-+.+-+..|..+++.+.++|+.+|++..+++++|+++++.++|+
T Consensus 414 ~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~ 493 (524)
T KOG4303|consen 414 QTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQ 493 (524)
T ss_pred CCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhhe
Confidence 1 1123345568899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccc
Q 014861 386 FCIVLGVLLMILAPIGGLRSIIMSAKNYE 414 (417)
Q Consensus 386 ~~~~~g~~~~v~g~~~si~~l~~~~~~~~ 414 (417)
.++++|...++.|.|.|..++++.+++=.
T Consensus 494 ~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~ 522 (524)
T KOG4303|consen 494 GIIIMGCSVCVSGVYFSSMELIRAINSAD 522 (524)
T ss_pred eEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence 77889999999999999999999998643
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-33 Score=271.04 Aligned_cols=351 Identities=19% Similarity=0.228 Sum_probs=282.2
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
..+++.+.+++++++.++++|+|+|++|++++..|+.++++++++++.++.++.+++.|+..+.++. +.++.+++|+.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-KASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHh
Confidence 4567789999999999999999999999999999999999999999999999999999998766553 259999999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
||+++ +++++...+.+++.+.+|.+..+|.+++.++....... .++....+++..++.++++.++...++..+.+...
T Consensus 83 G~~~~-~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~-~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 83 GKKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP-LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC-cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 98655 99999999999999999999999999999987553222 67788888889999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHH
Q 014861 185 MSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV 264 (417)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~ 264 (417)
.+..++.+..+... +.+.... ...+... +..+..+..++|+++|||+||+++|++++|| |++++++.+|+...
T Consensus 161 ~v~~~~~l~~~~~~-~~~~~~l-~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~~ 233 (415)
T COG0814 161 KVIYLVLLVVYLIP-HWNPANL-FALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILI 233 (415)
T ss_pred HHHHHHHHHHHHhc-ccCHHHH-hcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHHH
Confidence 66655544433322 2211111 1111111 4678899999999999999999999999999 55555357799999
Q ss_pred HHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCch-------------HHHHHHHHHHHHHHHhhcccccccHHHHHHH
Q 014861 265 AYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPI-------------WIVAAANLFVVVHVIGSYQIFAMPVFDMIET 331 (417)
Q Consensus 265 a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~-------------~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~ 331 (417)
+..+..++|..+++.+|..+|+++.+|++++.++.+ ......+++.++.+..||--.....++.+++
T Consensus 234 ~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~ 313 (415)
T COG0814 234 GSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLAD 313 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhH
Confidence 999999999999999999999999999999997643 2444566677777777776777777777777
Q ss_pred HHhhhcC---CChhh-HHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH
Q 014861 332 FLVKQLK---FTPSF-MLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY 385 (417)
Q Consensus 332 ~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~ 385 (417)
.+.++++ +++.. ..........+..+...+...|..+.+.+.+|+...+++.|.
T Consensus 314 ~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 314 LFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 7765211 11122 334445556667888888889999999999999999988877
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=2.5e-23 Score=201.59 Aligned_cols=335 Identities=17% Similarity=0.241 Sum_probs=243.6
Q ss_pred CCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCc
Q 014861 28 RNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDK 107 (417)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 107 (417)
++.+.+++++.+.++.+|+|+|+||++.+..|..++.+.+++++.++.+|+.++.|...+.++ ..++.+++|+.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhChH
Confidence 457889999999999999999999999999999999999999999999999999997654444 359999999999985
Q ss_pred ccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 014861 108 LGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSL 187 (417)
Q Consensus 108 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 187 (417)
|+++..+...+..++.+++|....++.+++.++...+ .+.++..-..++.+++..+... ..+...+.+..-+...+
T Consensus 79 -g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 79 -GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 5599999999999999999999999999999887642 2333343334444443333333 23344444444433333
Q ss_pred HHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHH
Q 014861 188 SYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYI 267 (417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~ 267 (417)
..........+.+.+.+.... ....+.++.....++|+.++||+.|+.+|++.+.++ +|++ |.+|++..+..
T Consensus 155 ~~~~~l~~~~~p~~~~~~L~~---~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~ai~~Gs~ 226 (394)
T PF03222_consen 155 ISFIILVVYLIPHWNPSNLLD---APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHhhhcCHHHhhc---cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHHHHHHHH
Confidence 222222223332222111111 112345788889999999999999999999999984 3444 45699999999
Q ss_pred HHHHHHHhHhhhhhh-----------cccCCChH--HHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHh
Q 014861 268 IVAICYFPVALVGYY-----------IFGNTVED--NILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLV 334 (417)
Q Consensus 268 ~~~~~y~~~g~~gy~-----------~fG~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~ 334 (417)
+..++|++.-...-. .-+++..+ ..+.+..++.+...+..++-.+++.+||--.....+|.+.|.++
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k 306 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFK 306 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999886444332 11222221 34444455567888899999999999999999999999999986
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHccC-hhhhhhhhhhcchhH
Q 014861 335 KQLKFTPSFMLRLVTRSLYVAFTMIVAISVPF-FGSLMGFFGGFALAP 381 (417)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~vp~-~~~i~~~~Ga~~~~~ 381 (417)
.+ ++...|.....+..++++++|...|+ |-..+++.| ...+.
T Consensus 307 ~~----~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~i 349 (394)
T PF03222_consen 307 LK----NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAI 349 (394)
T ss_pred CC----ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHH
Confidence 52 22334555666778889999999986 778888888 55443
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=1.9e-23 Score=200.30 Aligned_cols=338 Identities=14% Similarity=0.101 Sum_probs=241.0
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCC
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGD 106 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 106 (417)
+||.+...+++.+.+|++|+|+|++|.+.++.|+.++++++++++..+.+|..++.|...+.++ ..++.+++|+.+||
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~--g~~l~tma~~~LG~ 83 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV--GSSFNTITKDLIGN 83 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcCh
Confidence 3455888999999999999999999999999999999999999999999999999998665544 35899999999998
Q ss_pred cccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 014861 107 KLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMS 186 (417)
Q Consensus 107 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 186 (417)
.|+.+.+++..+..++.+++|+...++.+++.++...+ .+.++....+++.++.-+..+.. .+...+.+..-+...
T Consensus 84 -~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~--~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~l~~~~ 159 (415)
T PRK09664 84 -TWNIISGITVAFVLYILTYAYISANGAIISETISMNLG--YHANPRIVGICTAIFVASVLWIS-SLAASRITSLFLGLK 159 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999875321 12334444455566666665543 355555544443332
Q ss_pred HHHHHHHhhhcccccCCCCccccCCCCC-chhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHH
Q 014861 187 LSYSTIAWVVPLEKGVEPDVDYSYNAKS-TTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVA 265 (417)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a 265 (417)
++..+..+.....+-+.+... +.+... ....+.....++|++++||+.|+++|++.+.++ +|+++ .+|++..+
T Consensus 160 ii~f~~~~~~l~~~i~~~~L~-~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--~~kaIl~G 233 (415)
T PRK09664 160 IISFVIVFGSFFFQVDYSILR-DATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--LIKSVVFG 233 (415)
T ss_pred HHHHHHHHHHHhhcccHHHHh-cCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--HHHHHHHH
Confidence 221111111111111111110 000010 011134577899999999999999999999983 34443 45889988
Q ss_pred HHHHHHHHHhHhhh--h---------hhcccCCChHHHh--hCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHH
Q 014861 266 YIIVAICYFPVALV--G---------YYIFGNTVEDNIL--LTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETF 332 (417)
Q Consensus 266 ~~~~~~~y~~~g~~--g---------y~~fG~~~~~~il--~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~ 332 (417)
..+..++|.+.=.+ | ....|+++++.+. ..-.++.+...+..++..+++.+||--.....+|.+.|.
T Consensus 234 s~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 234 SLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888664222 2 1233344444112 112345677888999999999999999999999999999
Q ss_pred HhhhcCCChhhHHHHHHHHHHHHHHHHHHHHccC-hhhhhhhhhhcchh
Q 014861 333 LVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPF-FGSLMGFFGGFALA 380 (417)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~vp~-~~~i~~~~Ga~~~~ 380 (417)
++.+++ +..|.....+..+++.+++...|+ |-..+++.|..+..
T Consensus 314 ~~~~~~----~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~i 358 (415)
T PRK09664 314 FKIDNS----HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATI 358 (415)
T ss_pred hCCCCc----cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 866532 234666667788999999999998 88899999986543
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.92 E-value=8.8e-23 Score=196.01 Aligned_cols=338 Identities=15% Similarity=0.097 Sum_probs=245.4
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
+++++.+...+++.+.+|.+|+|+|++|++.++.|..+++++++++|.++.+|..++.|...+.++ ..++.+++|+.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~--g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI--GSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHc
Confidence 346678999999999999999999999999999999999999999999999999999998654443 358999999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
|| .|+.+.+++..+..++.+++|+...+|.+++.++.. + .+.++..-.+++.++.-...+.. .+...+.+..-+.
T Consensus 84 G~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~--~~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n~~l~~ 158 (414)
T PRK10483 84 GK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S--LNVPARAAGFGFALLVAFVVWLS-TKAVSRMTAIVLG 158 (414)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C--CCCcHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence 98 577999999999999999999999999999998762 1 12344444555555555555542 3444444444333
Q ss_pred HHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHH
Q 014861 185 MSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV 264 (417)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~ 264 (417)
..++..++.+.....+.+.+... +. ....+..+.....++|++++||+.|+++|++.++++ +|++ |.+|++..
T Consensus 159 ~~i~~f~~~~~~l~~~i~~~~L~-~~-~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~i 231 (414)
T PRK10483 159 AKVITFFLTFGSLLGHVQPATLF-NV-AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHh-cc-ccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHH
Confidence 32221111112212121111110 00 011122356688999999999999999999999983 3444 56799999
Q ss_pred HHHHHHHHHHhHhhhhhhcc-----------cCCChH--HHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Q 014861 265 AYIIVAICYFPVALVGYYIF-----------GNTVED--NILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIET 331 (417)
Q Consensus 265 a~~~~~~~y~~~g~~gy~~f-----------G~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~ 331 (417)
+..+..++|++.=..+...- +++.+. +.+.+..++.+...+..++..+++.+||--.....+|.+.|
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998655444332 222211 12222223456667889999999999999999999999999
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHccC-hhhhhhhhhhcchh
Q 014861 332 FLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPF-FGSLMGFFGGFALA 380 (417)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~vp~-~~~i~~~~Ga~~~~ 380 (417)
.++.+++ +..|.....+..+++.++|...|+ |-..+++.|..+..
T Consensus 312 ~~k~~~~----~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~i 357 (414)
T PRK10483 312 LFGFDDS----AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATI 357 (414)
T ss_pred HhCCCCc----cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9976532 334556666788999999999997 88899999976543
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.91 E-value=6.7e-23 Score=200.00 Aligned_cols=328 Identities=15% Similarity=0.112 Sum_probs=239.9
Q ss_pred HHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcccceehh
Q 014861 35 SAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVV 114 (417)
Q Consensus 35 ~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~ 114 (417)
+++...++++|+|++++|..+++.|..++++.++++++++.++...+.|...+.|+. .++.+++++.+||+.| ++++
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~--~~~~~~~~~~~G~~~g-~~~~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGG--ASFNTIAKDLLGKTGN-IIAG 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhCHHHH-HHHH
Confidence 345678999999999999999999999999999999999999999999987766654 3899999999998555 8999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHh
Q 014861 115 PQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAW 194 (417)
Q Consensus 115 ~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 194 (417)
+...+.++..+.+|.+..++.+.++++..... ..+.....++..+++.++. .+..+...+++.+.+...+..+.+++
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754321 2333333333444444444 44677888887777776554333333
Q ss_pred hhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHH
Q 014861 195 VVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYF 274 (417)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~ 274 (417)
+....+.+.++..+. ...+..+.++..+++...++|++|.+++++.+|+ +|+ +++.+|++..+..++.++|+
T Consensus 156 i~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDLLLDV---ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHHHhcC---ccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 333332211111111 1112356678899999999999999999999998 544 44678999999999999999
Q ss_pred hHhhhhhhcccCCChHH-------------HhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhhcCCCh
Q 014861 275 PVALVGYYIFGNTVEDN-------------ILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTP 341 (417)
Q Consensus 275 ~~g~~gy~~fG~~~~~~-------------il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~~~~~~ 341 (417)
++........+.+.-++ ...+.-++.+...+..++..+++.+|+.....+.++.+.+.++++++
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--- 304 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--- 304 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---
Confidence 98777666654332211 12221123456678888999999999999999999999888876432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHccChh-hhhhhhhhcchhH
Q 014861 342 SFMLRLVTRSLYVAFTMIVAISVPFFG-SLMGFFGGFALAP 381 (417)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~la~~vp~~~-~i~~~~Ga~~~~~ 381 (417)
+.+|+....+..+++.++|.+.|+.. ..++..| ++++.
T Consensus 305 -~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~ 343 (381)
T TIGR00837 305 -KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATI 343 (381)
T ss_pred -cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHH
Confidence 22356667777899999999999866 8888888 55443
No 13
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.90 E-value=6e-21 Score=183.22 Aligned_cols=349 Identities=12% Similarity=0.095 Sum_probs=242.9
Q ss_pred hHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCccccee
Q 014861 33 WYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWI 112 (417)
Q Consensus 33 ~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 112 (417)
...+..+.++.+|+|+|+||-.....|..+.++++++++.+++++.+.+.|.....++ +..++.+++|+.+||++| .+
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~g~-~i 99 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKTGG-VV 99 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChhHH-HH
Confidence 4445999999999999999999999999999999999999999999999996543312 245999999999998766 89
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHH
Q 014861 113 VVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTI 192 (417)
Q Consensus 113 v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~ 192 (417)
.+++.++..+..+.+|...+.+.+++.+.+..+ ..+.++....+++.+++....+.. -+.+.+++..-+...++....
T Consensus 100 ~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~-~~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~i~~l~~ 177 (443)
T PRK13629 100 ITFLYFFAICPLLWIYGVTITNTFMTFWENQLG-FAPLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPFIASLVL 177 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cCCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887665432 112344555555555555555543 244444444333322222222
Q ss_pred HhhhcccccCCCCccc-cC---CCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCC---CCC--CCCcchHHH
Q 014861 193 AWVVPLEKGVEPDVDY-SY---NAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPE---KPS--KGPMWKGVV 263 (417)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~---~~~--~~~~~~~~~ 263 (417)
...+.+.+.+.+.... +. ++............++|++++||+.|+.+|+....+|+..+ +++ ++|.+|++.
T Consensus 178 l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~ 257 (443)
T PRK13629 178 ISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIIS 257 (443)
T ss_pred HHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 2233333332221110 00 00000012245788999999999999999999999654322 233 567789999
Q ss_pred HHHHHHHHHHHhHhhhhhhcccCCCh-----H--HHhhC----CCC---c-----hHHHHHHHHHHHHHHHhhccccccc
Q 014861 264 VAYIIVAICYFPVALVGYYIFGNTVE-----D--NILLT----LEK---P-----IWIVAAANLFVVVHVIGSYQIFAMP 324 (417)
Q Consensus 264 ~a~~~~~~~y~~~g~~gy~~fG~~~~-----~--~il~~----~~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~~ 324 (417)
.+..+..++|++.-+.+...-+++.- + +++.. +++ . .+...+..++..+++.+||--....
T Consensus 258 ~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LG 337 (443)
T PRK13629 258 RASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLG 337 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888877654321 1 21221 222 1 4567778888899999999999999
Q ss_pred HHHHHHHHHhh----hc-CCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH
Q 014861 325 VFDMIETFLVK----QL-KFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY 385 (417)
Q Consensus 325 ~~~~l~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~ 385 (417)
.+|.++.++.+ .+ ++...+..+......+.+.++..+..-|++=.+++-+|+-..+.+.|+
T Consensus 338 l~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l 403 (443)
T PRK13629 338 TLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCL 403 (443)
T ss_pred HHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHH
Confidence 99999998842 11 112344556677778889999999999998888886666555544444
No 14
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.90 E-value=7.8e-22 Score=190.34 Aligned_cols=327 Identities=15% Similarity=0.184 Sum_probs=235.5
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCccc
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLG 109 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g 109 (417)
.+...+++.+.+|.+|+|+|+||.+.++.|.+++++++++++.++.++.+.+.|...+.++ ..++.+++|+.+||+ |
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~-g 79 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRY-G 79 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChH-H
Confidence 3788999999999999999999999999999999999999999999999999997554333 358999999999986 5
Q ss_pred ceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 014861 110 LWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSY 189 (417)
Q Consensus 110 ~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~ 189 (417)
+++..+...+..+..+.+|....++.+++.++++.+ .+.+.....+.+.++.-...+. ..+...+.+..-+...++.
T Consensus 80 ~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~--~~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 80 QWLTGFSMMFLMYALTAAYISGAGELLASSISDWTG--ISMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999888876532 1223333334443333333333 2344444433333322222
Q ss_pred HHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHHH
Q 014861 190 STIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIV 269 (417)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~ 269 (417)
.+....+.+.+.+.++... .++ +......++|++++||+.|+++|++.+.++ +|++ |.+|++..+..+.
T Consensus 157 ~~~~~~~l~p~~~~~~L~~----~~~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i~~Gs~i~ 225 (403)
T PRK15132 157 LVVMLALMMPHIHKVNLLT----LPL--QQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHHhcCHHHHhc----CCc--cccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHHHHHHHHH
Confidence 2222222222221111110 011 112478999999999999999999999983 3333 4669999999999
Q ss_pred HHHHHhHhhhhhhcccCCC----------hHHHhhCC---CCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhh
Q 014861 270 AICYFPVALVGYYIFGNTV----------EDNILLTL---EKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQ 336 (417)
Q Consensus 270 ~~~y~~~g~~gy~~fG~~~----------~~~il~~~---~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~ 336 (417)
.++|++.=..+...-+.+. .++.++.+ .+..+...+..++..+++.+||--.....+|.+.|.++.+
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~ 305 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR 305 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999988777665554331 11223322 2346778889999999999999999999999999998654
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHccC-hhhhhhhhhhc
Q 014861 337 LKFTPSFMLRLVTRSLYVAFTMIVAISVPF-FGSLMGFFGGF 377 (417)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~la~~vp~-~~~i~~~~Ga~ 377 (417)
++ +..|.....+..++++++|...|+ +....++.|..
T Consensus 306 ~~----~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~ 343 (403)
T PRK15132 306 NT----VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA 343 (403)
T ss_pred cc----ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22 233666777888999999999997 78888888864
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=2.5e-19 Score=173.46 Aligned_cols=343 Identities=12% Similarity=0.055 Sum_probs=237.9
Q ss_pred hHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCccccee
Q 014861 33 WYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWI 112 (417)
Q Consensus 33 ~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 112 (417)
..-++.+.++++|+|+|.+|...++.||+..++..+++..+++++.+.+.|.....+. +..++.|++|+.+||++| .+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~i 83 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-IL 83 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HH
Confidence 4568899999999999999999999999999999999999999999999996332222 134999999999999777 78
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHH
Q 014861 113 VVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTI 192 (417)
Q Consensus 113 v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~ 192 (417)
..+..++..+..+.+|....++.+.+.+....... ...+....+..++.+-....+..+.+.+++.+-+...++.+..
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~ 161 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA--PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVL 161 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887654211 1112222222222222333345666777666666543333333
Q ss_pred HhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCC--CCCcchHHHHHHHHHH
Q 014861 193 AWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPS--KGPMWKGVVVAYIIVA 270 (417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~--~~~~~~~~~~a~~~~~ 270 (417)
+....+.+.+.+.... .+. ....+.++..++++.++||.+|+++|+...+.|+..+||+ ++|.+|+...+..+..
T Consensus 162 l~~~lip~~~~~~L~~-~p~--~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 162 LSLYLIPHWNGANLTT-FPS--FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHHcCHHHHhc-CCc--ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 3333343322121111 111 1124678999999999999999999999833322213333 4566799999999999
Q ss_pred HHHHhHhhhhhhcccCCChH-------HHhh---CCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhh-c--
Q 014861 271 ICYFPVALVGYYIFGNTVED-------NILL---TLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQ-L-- 337 (417)
Q Consensus 271 ~~y~~~g~~gy~~fG~~~~~-------~il~---~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~-~-- 337 (417)
++|+..-+.+....+++.-. +.+. |-.+..+...+..++..+++.+||--+...++|.+++++.+. +
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~ 318 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK 318 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 99999999888887644321 1222 112335677788888899999999999999999999988321 1
Q ss_pred -CCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHH
Q 014861 338 -KFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPT 382 (417)
Q Consensus 338 -~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~ 382 (417)
++.+++..+......+.+.++..+..-|++=.+.+-+|+-..+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i 364 (397)
T TIGR00814 319 GKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMI 364 (397)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHH
Confidence 112234455566667788999999999997777765555444333
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.60 E-value=3.2e-12 Score=127.14 Aligned_cols=242 Identities=10% Similarity=0.026 Sum_probs=155.6
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|...+.|.++ ......++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 46789999999999999999999999999888875 5788888899999999999999765565544 66788889999
Q ss_pred CcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHH-HHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 106 DKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIF-AAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 106 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
|+.| ++.....++.......++.....+++..+++.. . .....+.... .+.++-....+..+....++.+...
T Consensus 81 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~---~--~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~ 154 (438)
T PRK10655 81 KSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGAT---L--SPVQICLATIGVLWLCTVANFGGARITGQISSVTVW 154 (438)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c--chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9888 777777666555544554444455555544311 0 1111111111 1122222333445555555444433
Q ss_pred HHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHH
Q 014861 185 MSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV 264 (417)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~ 264 (417)
..++.+.++..........++.++.++. .....+.++..++....|+|.|.+....+.+|+ |||+| +.+|++..
T Consensus 155 ~~l~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~ 228 (438)
T PRK10655 155 GVIIPVVGLSIIGWFWFSPSLYVAAWNP-HHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVLG 228 (438)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCcCc-cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHHH
Confidence 3222121111111111111111111111 111224567788889999999999999999999 88877 68899999
Q ss_pred HHHHHHHHHHhHhhhhhh
Q 014861 265 AYIIVAICYFPVALVGYY 282 (417)
Q Consensus 265 a~~~~~~~y~~~g~~gy~ 282 (417)
+..++.++|++.......
T Consensus 229 ~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 229 GTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999987655443
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.56 E-value=3.6e-12 Score=127.32 Aligned_cols=242 Identities=13% Similarity=0.089 Sum_probs=158.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+.+|+.+.++..+..++.++|+|++..|.. .+++|- ..++..++.+++....+..+.|...+.|..+ +..+.+++.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 567889999999999999999999999976 555564 5778888899999999999999877677655 788899999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
+||.+| +++....++.......+.....+.+++.+.+. .....+ .+....++-....+..+..+.+.....
T Consensus 95 ~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-~~~~~~l~~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 95 WGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------VPTWIW-AAAFFIIINAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred hChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------CcHHHH-HHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 999888 88888777766555555555555555543321 111122 222222222333445555555443332
Q ss_pred HH---HHHHHHHHhhhcccccCC---CCccccCC-CCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCC
Q 014861 184 VM---SLSYSTIAWVVPLEKGVE---PDVDYSYN-AKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 256 (417)
Q Consensus 184 ~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~ 256 (417)
.. .++.++++.......+.. .+.+..++ ....+.++.++..++....|+|.|...+....+|+ |||+|
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k- 240 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK- 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-
Confidence 22 111111111111111110 11111111 11123457788899999999999999999999999 88887
Q ss_pred CcchHHHHHHHHHHHHHHhHhhhhhhc
Q 014861 257 PMWKGVVVAYIIVAICYFPVALVGYYI 283 (417)
Q Consensus 257 ~~~~~~~~a~~~~~~~y~~~g~~gy~~ 283 (417)
+.+|++..+.....++|.+........
T Consensus 241 ~iPrai~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 241 SIPKAVNQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 688999999999999998765544433
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.56 E-value=1.8e-12 Score=128.75 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=156.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
+++|+.+.++.+...+++++|+|++.+|...++.|- ..+...+++++........+.|...+.|..+ ...+.+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 367889999999999999999999999999988875 3677777788888888888999776677654 55666677 7
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhH-HHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWI-MIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
||++| +.+....+........++.+...+++...++... .+. ..+. .+..+.++-+...+..+....++.+..
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN---DPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---ChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99888 7777766654444444555555566655543221 011 1111 111111222333444555555554444
Q ss_pred HHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHH
Q 014861 184 VMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVV 263 (417)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~ 263 (417)
+..++.+.........+.+.++...+++. ..+.+..++..++....|+|.|.+.+....+|+ |||+| +.+|++.
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~ 225 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHH
Confidence 43222111111111111111111111111 112356788899999999999999999999999 88876 6889999
Q ss_pred HHHHHHHHHHHhHhhhhhhcc
Q 014861 264 VAYIIVAICYFPVALVGYYIF 284 (417)
Q Consensus 264 ~a~~~~~~~y~~~g~~gy~~f 284 (417)
.+...+.++|++..+......
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999877654443
No 19
>PRK11021 putative transporter; Provisional
Probab=99.55 E-value=2.6e-11 Score=119.53 Aligned_cols=230 Identities=13% Similarity=0.161 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcc
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMS-HLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKL 108 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 108 (417)
.+.++++...+++++|+|++.+|.... .+| ...+...++.++........+.|...+.|+.+ ......++.+||++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG-~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~ 77 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAG-NNSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRL 77 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchh
Confidence 368899999999999999999998744 555 46788888899999999999999877777655 77888999999998
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH
Q 014861 109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLS 188 (417)
Q Consensus 109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~ 188 (417)
| +......+........+.......++...++. ..+. .....+....++-....+..+...+++....+..+.
T Consensus 78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~ 150 (410)
T PRK11021 78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----SSWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIALLIVA 150 (410)
T ss_pred H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----CCch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8 67776665543333333333334444433321 1111 111112222223333444555555555443322221
Q ss_pred HHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHH
Q 014861 189 YSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYII 268 (417)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~ 268 (417)
.+. ... . .+.....+...+. ..+.++.++..++....|+|.|.+.+....+|+ |||+| +.+|++..+...
T Consensus 151 i~~--~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~ 220 (410)
T PRK11021 151 LVV--AIW-W-AGDIKPADIPFPA-PGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLL 220 (410)
T ss_pred HHH--HHH-H-HcCCchhcCCCCC-CCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHH
Confidence 111 111 1 1111111111111 122456788899999999999999999999999 88876 688999999999
Q ss_pred HHHHHHhHhhh
Q 014861 269 VAICYFPVALV 279 (417)
Q Consensus 269 ~~~~y~~~g~~ 279 (417)
+.++|++....
T Consensus 221 ~~~lYil~~~~ 231 (410)
T PRK11021 221 AGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.54 E-value=1.4e-11 Score=123.68 Aligned_cols=244 Identities=13% Similarity=0.085 Sum_probs=158.0
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHhcchhcCC-cccCcHHHHHHhh
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWG-PGIAVLIISWVVTLYTLWQMVEMHEMVPG-KRFDRYHELGQGA 103 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~-~gi~~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~l~~~~ 103 (417)
.+|+.|.++.++..+++++|+|++.+|....+.|-. ..++..++.++........+.|...+.|+ .+ ...+..++.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~ 82 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREG 82 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhH
Confidence 467899999999999999999999999997765543 23566778888888888889997766666 44 566778999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHH--HHHHHHHHHhhCCCCchhHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIM--IFAAIHFVLSHLPNFNSISVVSLA 181 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~--i~~~~~~pl~~~~~~~~l~~~s~~ 181 (417)
+||+.| ++.....++.......++.....+++..+++.... .+.....+ +....++-....+..+...+++..
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~ 157 (473)
T TIGR00905 83 FGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS----GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTI 157 (473)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999888 77787776666555666666666666666553210 11111111 112222333345566666666665
Q ss_pred HHHHHHHHHHHHhhhcc--cccCCCCccccCCCC-CchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCc
Q 014861 182 AAVMSLSYSTIAWVVPL--EKGVEPDVDYSYNAK-STTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 258 (417)
Q Consensus 182 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~ 258 (417)
.....+..++++.+..+ .++.....+...+.. .....+..+..++....|+|.|.+......+|+ || + ++.
T Consensus 158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~-~-r~i 231 (473)
T TIGR00905 158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN-K-SDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc-c-ccc
Confidence 55443322221111111 111110001100001 112245677788999999999999999999999 77 3 468
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhh
Q 014861 259 WKGVVVAYIIVAICYFPVALVGYY 282 (417)
Q Consensus 259 ~~~~~~a~~~~~~~y~~~g~~gy~ 282 (417)
+|++..+..++.++|++.......
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999988766443
No 21
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.53 E-value=1.5e-11 Score=123.48 Aligned_cols=245 Identities=11% Similarity=0.105 Sum_probs=152.4
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+.+|+.+.++.++..++.++|+|++..|.. .+.+|-...++..++.+++.......+.|...+.|.++ .+....++.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~ 88 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARY 88 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHh
Confidence 357889999999999999999999988876 56667444567778888999999999999876677654 678899999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
+||++| +.+....++.....+.......+..++.+.+ +.....+.++. .+++-+...+..+.....+....
T Consensus 89 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~~~~-~~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 89 LGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------QVPVWPWCLLF-CALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------cCcHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 999888 7777777766555544444444433332221 11111122222 22222333344555444433322
Q ss_pred HHHHHHH---HHH-hhhcc--cccCCCCcc---ccCCCCCc-hhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCC
Q 014861 184 VMSLSYS---TIA-WVVPL--EKGVEPDVD---YSYNAKST-TDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKP 253 (417)
Q Consensus 184 ~~~~~~~---~~~-~~~~~--~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~ 253 (417)
...++.+ +++ +.... ......+.. .+++...+ +....++..++....|+|.|...+....+|+ |||
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP 235 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----ENP 235 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCh
Confidence 2111111 111 01100 000000000 01111111 2334567788888999999999999999999 888
Q ss_pred CCCCcchHHHHHHHHHHHHHHhHhhhhhhccc
Q 014861 254 SKGPMWKGVVVAYIIVAICYFPVALVGYYIFG 285 (417)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 285 (417)
+| +++|++..+.....++|++..+.......
T Consensus 236 ~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 236 AK-VIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 76 68899999999999999998765544443
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.52 E-value=1.8e-11 Score=122.07 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=153.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
+.+|+.+.++.+...+++++|+|++.+|....+.|. ..+...++.++........+.|.....|..+ .....+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 467889999999999999999999999999888764 3556667777777788888888766666544 5556689999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHH--HHHHhhCCCCchhHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAI--HFVLSHLPNFNSISVVSLAA 182 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~~~~l~~~s~~~ 182 (417)
||++| ++.....++.......+......++...+.+.. .+.....++..++ ++-....+..+...+++.+.
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99888 777777666554444444444445544443321 0111111121222 22223344555555555554
Q ss_pred HHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHH
Q 014861 183 AVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGV 262 (417)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~ 262 (417)
....++.+..+..........++....++ ......+..+..++....|+|.|.+......+|+ |||+| +.+|++
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPrai 228 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHHH
Confidence 44333212211111111111111111111 0111245567778889999999999999999999 88877 688999
Q ss_pred HHHHHHHHHHHHhHhhhhhhc
Q 014861 263 VVAYIIVAICYFPVALVGYYI 283 (417)
Q Consensus 263 ~~a~~~~~~~y~~~g~~gy~~ 283 (417)
..+..++.++|.+..+.....
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~ 249 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGM 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999987764433
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=99.52 E-value=1.6e-11 Score=123.76 Aligned_cols=243 Identities=12% Similarity=0.117 Sum_probs=153.0
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
.+|+.+.++..+..++.++|+|++..|.. ++++|- .+++..++.+++....+..+.|.....|..+ .....+++.+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~~ 102 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREFL 102 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHh
Confidence 57889999999999999999999999975 666664 5788888899999999999999877677655 7888999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHH-HHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIM-IFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
||++| +++....++.............+.+...+ +.+ ... ..|.. +...+++-....+..+....+.....
T Consensus 103 G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~----~~~--~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 103 GEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF----GGV--PQWVFALAALTIVGTMNMIGVKWFAEMEFWFA 174 (499)
T ss_pred CcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888 77777777655444443333344333221 111 011 22222 22222222333334455554444333
Q ss_pred HHHHH---HHHHHhhhcccccCCC-----Cccc-cCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCC
Q 014861 184 VMSLS---YSTIAWVVPLEKGVEP-----DVDY-SYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPS 254 (417)
Q Consensus 184 ~~~~~---~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~ 254 (417)
...+. ..+++.......+... +... ..+...++.++.++..++...+|+|.|...+....+|+ |||+
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~ 250 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChh
Confidence 22111 1111111111111110 0100 00111223455666677788999999999999999999 8887
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhhhhhhcc
Q 014861 255 KGPMWKGVVVAYIIVAICYFPVALVGYYIF 284 (417)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 284 (417)
| +++|++..++....++|+..........
T Consensus 251 r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~ 279 (499)
T PRK15049 251 T-MVPKAINSVIWRIGLFYVGSVVLLVMLL 279 (499)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 7 6889999999999999988766554443
No 24
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.52 E-value=8.5e-12 Score=127.05 Aligned_cols=249 Identities=10% Similarity=0.114 Sum_probs=166.6
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHH
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM--SHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQ 101 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~--~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 101 (417)
.+.+|+.+.++.++..++.++|+|++.+|... ..+|-. .++.+++.++.+......+.|...+.|..+ +.....+
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~ 100 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSY 100 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHH
Confidence 34678999999999999999999999999753 346643 666778888899999999999776676654 5556667
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcC----C----c-ccc-cchhhHHHHHHHHHHHhhCCC
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICP----S----C-KEI-KTSYWIMIFAAIHFVLSHLPN 171 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~----~----~-~~~-~~~~~~~i~~~~~~pl~~~~~ 171 (417)
+.+|+.+| +++....++.......+.....++++..++....+ . . ... .......+..++++-....+.
T Consensus 101 ~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 101 VTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence 78999888 88888888777666666666677777766543111 0 0 000 011112222222233344567
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCccccC---CCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCc
Q 014861 172 FNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSY---NAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPS 248 (417)
Q Consensus 172 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (417)
.+..++++.+.....+..+.++++....+....+..... ++...+.++.+++.+.....|+|.|...+....+|+
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~-- 257 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV-- 257 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc--
Confidence 777777766666544433333333333222211111000 001123356788899999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHhHhhhhh
Q 014861 249 TPEKPSKGPMWKGVVVAYIIVAICYFPVALVGY 281 (417)
Q Consensus 249 ~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy 281 (417)
|||+| +++|++..++.+++++|.++.+.-.
T Consensus 258 --knP~r-~iP~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 258 --KNPQR-AIPIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred --cCccc-cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877 6889999999999999999876643
No 25
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.52 E-value=8.1e-12 Score=133.14 Aligned_cols=247 Identities=13% Similarity=0.145 Sum_probs=161.8
Q ss_pred cccCCCchhHHHHHH-HHhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchh-cCCcccCcHHHHHH
Q 014861 25 TSSRNAKWWYSAFHN-VTAMVGAGVL-SLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEM-VPGKRFDRYHELGQ 101 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l-~~~~iG~GiL-~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~-~~~~~~~~y~~l~~ 101 (417)
...++.+++.+++.- +.+|+|+|++ .+++...++|...+++.++++++++..+...+.+.+.. .++.+ .-..+.+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHH
Confidence 446789999999998 9999999995 55567889998888999999999999999999996543 33322 3445567
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcC--Cccc-ccchhhHHHHHHHHHHHhhCCCCchhHHH
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICP--SCKE-IKTSYWIMIFAAIHFVLSHLPNFNSISVV 178 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~--~~~~-~~~~~~~~i~~~~~~pl~~~~~~~~l~~~ 178 (417)
+++||.+| ..+.++.++.....+..|.+..++++..+++.... .... .+.+.+..+..+++..+ .....+...++
T Consensus 151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~I-n~~Gvk~~ak~ 228 (953)
T TIGR00930 151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGI-SFAGMEWENKA 228 (953)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 78999998 88888888888888899999999998888754210 0001 11122222222222222 23344555555
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCC-C--Cc-ccc---C--CCCC-chhhHhHHHHHHHhHhhhccCccchhhhhhcCCc
Q 014861 179 SLAAAVMSLSYSTIAWVVPLEKGVE-P--DV-DYS---Y--NAKS-TTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPS 248 (417)
Q Consensus 179 s~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~---~--~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (417)
+.+.+++.++.++.+++..+..... + +. ..+ + +..+ ++....++...++++.+||.|......+..|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl-- 306 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL-- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 4444443232222222222211100 0 00 000 0 0001 11122347788899999999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHhHhhhh
Q 014861 249 TPEKPSKGPMWKGVVVAYIIVAICYFPVALVG 280 (417)
Q Consensus 249 ~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 280 (417)
|||+| .++|++..++.+++++|+++.+..
T Consensus 307 --KnP~r-~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 307 --KDPQK-AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred --cChhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88987 689999999999999999997643
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.52 E-value=1.1e-11 Score=124.30 Aligned_cols=242 Identities=14% Similarity=0.098 Sum_probs=153.2
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHh
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQG 102 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 102 (417)
.+.+|+.+.++..+..+++++|+|++..|. +++++|. ..+...++++++.......+.|.....+.. .++.+.+++
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~--~~~~~ya~~ 92 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEY--KSFSDFASD 92 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHH
Confidence 347888999999999999999999999876 5777776 456677778888888888888865422332 267789999
Q ss_pred hcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 014861 103 AFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAA 182 (417)
Q Consensus 103 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~ 182 (417)
.+||..| +++....++.......+.....+.+++.+.+. .....+..+ .+.++-+...+..+....++.+.
T Consensus 93 ~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------~~~~~~~~~-~~~~~~~iN~~g~~~~~~i~~~~ 163 (469)
T PRK11049 93 LLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------LSDWVASLA-VVLLLLSLNLATVKMFGEMEFWF 163 (469)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999888 88888887766555555555566555544321 111122222 22222223334455555555443
Q ss_pred HHHHHHHHHHHhhhc---cccc---CCC---CccccCCCC-CchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCC
Q 014861 183 AVMSLSYSTIAWVVP---LEKG---VEP---DVDYSYNAK-STTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEK 252 (417)
Q Consensus 183 ~~~~~~~~~~~~~~~---~~~~---~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 252 (417)
....+..+..+++.. ...+ ... ..++..++. ..+.++.++..++....|+|.|...+....+|+ ||
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----kn 239 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KD 239 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cC
Confidence 332221111111111 1111 000 011111111 123456678899999999999999999999999 88
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhHhhhhhh
Q 014861 253 PSKGPMWKGVVVAYIIVAICYFPVALVGYY 282 (417)
Q Consensus 253 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 282 (417)
|+| +.+|++..+.....++|.+.......
T Consensus 240 P~r-~iPrai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 240 PEK-SLPRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 876 67899988888888888877665543
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=99.52 E-value=4.2e-12 Score=126.03 Aligned_cols=290 Identities=11% Similarity=0.032 Sum_probs=184.4
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCC
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGD 106 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 106 (417)
+|+.+.++.++..+++++|+|++.+|......+....++..++.++........+.|...+.|+.+ ...+..++.+||
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~ 79 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMGE 79 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhCc
Confidence 578999999999999999999999997755433334666677788888888888888776666643 566777889999
Q ss_pred cccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCccc-c-----cchh--hHHHHHHHHHHHhhCCCCchhHHH
Q 014861 107 KLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKE-I-----KTSY--WIMIFAAIHFVLSHLPNFNSISVV 178 (417)
Q Consensus 107 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~-~-----~~~~--~~~i~~~~~~pl~~~~~~~~l~~~ 178 (417)
+.| ++.....++.....+..+....++++..+++....+..+ . +... +..+...+++-....+..+...++
T Consensus 80 ~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 80 LTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 888 777888877777778888888888887776532110000 0 0011 112223333334445567777777
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCc
Q 014861 179 SLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 258 (417)
Q Consensus 179 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~ 258 (417)
+.......+..+.++......+...++.++ ..+.+..++..++....|+|.|.+......+|+ |||+| +.
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~i 228 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTP-----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-DI 228 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCC-----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-cc
Confidence 777666544433222222222211111111 112346678889999999999999999999999 77865 57
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhcccCC-------ChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHH
Q 014861 259 WKGVVVAYIIVAICYFPVALVGYYIFGNT-------VEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIE 330 (417)
Q Consensus 259 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~-------~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~ 330 (417)
+|++..+..+..++|.+...........+ .-..+..+.. .++...+..+...++...+.-.......+.+.
T Consensus 229 p~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 229 PKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999876654332211 0011222222 23444455556666665555444444433333
No 28
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.51 E-value=1.2e-12 Score=126.39 Aligned_cols=335 Identities=15% Similarity=0.187 Sum_probs=193.9
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhC-h-hHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHH
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLG-W-GPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQ 101 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G-~-~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 101 (417)
...+||.+.+.++...+++++|+|++..|....+.+ - ..+.++.+++++++..++...+|.....|+++ -+|.- .+
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG-gd~ay-i~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG-GDYAY-IS 85 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-cchhh-HH
Confidence 446789999999999999999999999999855444 2 34556667789999999999999654444433 14444 45
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhh-HHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHH
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKS-FKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSL 180 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~ 180 (417)
++|||.+|-...++...+..-..+..+.+..+++ +++.++ .|. .++..-..+..+++..+.+ .|..++++.+.
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp----~c~-~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~ 159 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP----LCD-VPRVASKLLAAALLVLLTL-INSFSVKWATR 159 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC----CCC-CchHHHHHHHHHHHHHHHH-HhhhhhhHHHH
Confidence 5788877733333333333333435555555555 444333 232 3333333333344444433 36666666666
Q ss_pred HHHHHHH---HHHHHHhhhc---ccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCC
Q 014861 181 AAAVMSL---SYSTIAWVVP---LEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPS 254 (417)
Q Consensus 181 ~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~ 254 (417)
+..+... ..+.+++... ...+..++.+.+. ......+..++..++-...|||.|++++-.+.+|+ |||+
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP~ 234 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNPR 234 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhh----cCcc
Confidence 6655433 2222222222 2233333322221 12234566778899999999999999999999999 8888
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhC------CCC---chHHHHHHHHHHHHHHHhhcccccccH
Q 014861 255 KGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLT------LEK---PIWIVAAANLFVVVHVIGSYQIFAMPV 325 (417)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~------~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~ 325 (417)
| +++|++..++.+++++|+++-+..+.+-. .|+++.+ +.+ +++. ....+...++.+.+.--.++..
T Consensus 235 k-tLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~ 309 (479)
T KOG1287|consen 235 R-TLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSS 309 (479)
T ss_pred c-cchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHH
Confidence 7 68999999999999999999776655442 2222211 211 2233 4455566666666555444444
Q ss_pred HHHHHHHHhhhcCCChh----hHHHH--HHHHHHHHHHHHHHHHccChhhhhhhhhhc
Q 014861 326 FDMIETFLVKQLKFTPS----FMLRL--VTRSLYVAFTMIVAISVPFFGSLMGFFGGF 377 (417)
Q Consensus 326 ~~~l~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~ 377 (417)
...+..--++. +-+.. +.++. ....+...+..++..+.+|++.+++..+=.
T Consensus 310 SR~~~~~areG-~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~ 366 (479)
T KOG1287|consen 310 SRLFYAGAREG-HLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFA 366 (479)
T ss_pred HHHHHHHHHcc-CccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33332222111 10000 00010 112233344444445556777777776543
No 29
>PRK10746 putative transport protein YifK; Provisional
Probab=99.50 E-value=2.6e-11 Score=121.15 Aligned_cols=243 Identities=14% Similarity=0.101 Sum_probs=157.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+.+|+.+.++..+..+++++|+|++..|.. .+.+|- ..++..++++++.......+.|.....|..+ ++.+.+++.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~ 83 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRY 83 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 356889999999999999999999998876 666665 4667777888888999999999766666655 789999999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
+||++| +.+....++.....+.+.....+.+++.+.+. .....+..+.. +++-....+..+..+.+.....
T Consensus 84 ~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------~~~~~~~~~~~-~~~~~lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 84 MSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------MAQWIPALIAV-ALVALANLAAVRLYGEIEFWFA 154 (461)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHH
Confidence 999999 88888888777666676766666666554322 11122222222 2222223334444443332222
Q ss_pred HH---HH-HHHHHHhh-hcccccCC---CCccccCCC-CCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCC
Q 014861 184 VM---SL-SYSTIAWV-VPLEKGVE---PDVDYSYNA-KSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPS 254 (417)
Q Consensus 184 ~~---~~-~~~~~~~~-~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~ 254 (417)
.. .+ .++++.+. .....++. .+.++..++ ...+.++.++..++....|+|.|...+....+|+ |||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~ 230 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChh
Confidence 11 11 11111111 11111111 111110011 1113457788899999999999999999999999 8887
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhhhhhhcc
Q 014861 255 KGPMWKGVVVAYIIVAICYFPVALVGYYIF 284 (417)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 284 (417)
| +++|++..+.....++|.+.........
T Consensus 231 k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 231 V-TLRSAVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence 6 6889999888888899988655544443
No 30
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.49 E-value=4.6e-11 Score=119.37 Aligned_cols=243 Identities=12% Similarity=0.147 Sum_probs=160.5
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHh
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLP-YAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQG 102 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 102 (417)
.+.+|+.+.++..+..+++++|+|++..| .+.+++|- .+++..++.+++.......+.|...+.|.++ ...+.+++
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~ 84 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADD 84 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHH
Confidence 34678899999999999999999999999 55777775 5788888899999999999999876666654 77889999
Q ss_pred hcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHH-HHHHHHHHhhCCCCchhHHHHHH
Q 014861 103 AFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMI-FAAIHFVLSHLPNFNSISVVSLA 181 (417)
Q Consensus 103 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~~pl~~~~~~~~l~~~s~~ 181 (417)
.+||.+| ++.....++.....+.+.....+++++.+.+. . ..|... ....++-....+..+....+...
T Consensus 85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~ 154 (452)
T TIGR01773 85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------I--PLWLFSLILTIVLTLTNLYSVKSYGEFEFW 154 (452)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------C--cHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 9999888 78888877777666666666666666654322 1 122222 22222222333445555555443
Q ss_pred HHHHHHH----HHHHHhhhcc-cccCCC--CccccCC-CCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCC
Q 014861 182 AAVMSLS----YSTIAWVVPL-EKGVEP--DVDYSYN-AKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKP 253 (417)
Q Consensus 182 ~~~~~~~----~~~~~~~~~~-~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~ 253 (417)
..+..++ ++++.+.... ...... +..+..+ ....+.++.++..++....|+|.|.+......+|+ |||
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P 230 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNP 230 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cCh
Confidence 3332221 1111111111 111000 1111111 11113455678899999999999999999999999 888
Q ss_pred CCCCcchHHHHHHHHHHHHHHhHhhhhhhcc
Q 014861 254 SKGPMWKGVVVAYIIVAICYFPVALVGYYIF 284 (417)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 284 (417)
+| +.+|++..+......+|++.........
T Consensus 231 ~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~ 260 (452)
T TIGR01773 231 IK-SITRATNSVIWRIIVFYLGSIFIVVALL 260 (452)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHeeEe
Confidence 76 6889998888888999988755444333
No 31
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.49 E-value=5.9e-12 Score=119.85 Aligned_cols=340 Identities=12% Similarity=0.114 Sum_probs=223.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+.+|+.+.++--+.-++..||+|. +.-..+.+.+|- --++..++++++.++-++.+.|...+.|..+ |+.+.+++.
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~~ 86 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARKY 86 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHHH
Confidence 357889999999999999999997 566777888883 2445557789999999999999876566655 999999999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHH--HHHhhCCCCchhHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIH--FVLSHLPNFNSISVVSLA 181 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~~~~l~~~s~~ 181 (417)
+||++| ++.+...++.....+.+-+..++.+++.++++. ....+.+...+++ .=+...|...++.++-.+
T Consensus 87 lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 87 LGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-------PQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888 899999999999999999999999999987653 2233333332222 334557778887777555
Q ss_pred HHHHHHHHHHHHhhhccccc---C--CCCccccC-CCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCC
Q 014861 182 AAVMSLSYSTIAWVVPLEKG---V--EPDVDYSY-NAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 255 (417)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~ 255 (417)
-.+..++.++++-...+..+ . ..+.+.-+ +..--|+++.++..++-+.+|||.+...+-...+|- |||+|
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k 234 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPEK 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhh
Confidence 55544432322222222111 1 11221111 112246788999999999999999999999999999 88887
Q ss_pred CCcchHHHHHHHHHHHHHH-----hHhhhhhhcccCCChH--HHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHH
Q 014861 256 GPMWKGVVVAYIIVAICYF-----PVALVGYYIFGNTVED--NILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDM 328 (417)
Q Consensus 256 ~~~~~~~~~a~~~~~~~y~-----~~g~~gy~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 328 (417)
.++|++..-..-..++|. ++.+.-+-.++++.++ .++...+- .+...+.+.....+...+.---++..-+.
T Consensus 235 -~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglystsRm 312 (462)
T COG1113 235 -AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTSRM 312 (462)
T ss_pred -HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC-cccccceeEEEeechhhcccccccccchH
Confidence 467777766666666664 4444455555554444 33333332 23333444444455555555555666555
Q ss_pred HHHHHhhhc--------CCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHH
Q 014861 329 IETFLVKQL--------KFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTS 383 (417)
Q Consensus 329 l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~ 383 (417)
+..+-..++ +++.-...-+..+.+...+..++....| +.++.++=+..+.+..
T Consensus 313 L~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l 373 (462)
T COG1113 313 LYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLL 373 (462)
T ss_pred HHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH
Confidence 555532211 0111123445667777788888888889 6677776666654433
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.46 E-value=9.7e-12 Score=120.46 Aligned_cols=286 Identities=14% Similarity=0.176 Sum_probs=182.4
Q ss_pred CCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCc
Q 014861 28 RNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDK 107 (417)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 107 (417)
+|.|.+|..+.+.++++|+|++.+|....+.+-..+.+..++.++........+.+..++.|++ +..++.++.+||.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 3678999999999999999999999987765555678888888999998999999987777764 7999999999998
Q ss_pred ccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhH-HHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 014861 108 LGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWI-MIFAAIHFVLSHLPNFNSISVVSLAAAVMS 186 (417)
Q Consensus 108 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 186 (417)
.| .+..+...++....+.......++.++... . +. . ..+. .+..++..-....+..+...+++.+.....
T Consensus 78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~--t--p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~ 148 (359)
T TIGR00912 78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYL---L-PR--T--PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIF 148 (359)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CC--C--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 78 566666666665555555555555554332 1 11 1 2222 222222223333456777777777666544
Q ss_pred HHH-HHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHH-HhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHH
Q 014861 187 LSY-STIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTAL-GDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV 264 (417)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~ 264 (417)
+.. ..++......+.+..+..| ..+.++.+...+. +...++|.+.........++ |||++ .+|+...
T Consensus 149 i~~~~~il~~~~~~~~~~~~l~P-----~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~~ 217 (359)
T TIGR00912 149 LILFILVLILLAPKLGNIKNLLP-----VLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSIIK 217 (359)
T ss_pred HHHHHHHHHHHhcccccHHHccC-----ccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHHH
Confidence 433 1222222222111111111 1123445555444 47889999988888888888 66654 5599999
Q ss_pred HHHHHHHHHHhHhhhhhhcccCCChHH-------HhhCCCCch---HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHh
Q 014861 265 AYIIVAICYFPVALVGYYIFGNTVEDN-------ILLTLEKPI---WIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLV 334 (417)
Q Consensus 265 a~~~~~~~y~~~g~~gy~~fG~~~~~~-------il~~~~~~~---~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~ 334 (417)
+...+.++|.+.-......+|.+..++ .....+-++ ..-.+.-..-......+.-...+.....+.+.++
T Consensus 218 ~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~ 297 (359)
T TIGR00912 218 AIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998888888543321 111111111 1112233344456666666777778888888876
Q ss_pred hh
Q 014861 335 KQ 336 (417)
Q Consensus 335 ~~ 336 (417)
.+
T Consensus 298 ~~ 299 (359)
T TIGR00912 298 KR 299 (359)
T ss_pred CC
Confidence 54
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.46 E-value=5.4e-11 Score=118.81 Aligned_cols=236 Identities=14% Similarity=0.120 Sum_probs=154.4
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+.+|+.+.++..+..+++++|+|++..|.. .+++|- ..+...++++++.......+.|...+.|..+ ++.+.+++.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~ 85 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKY 85 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 467889999999999999999999999977 555554 5667778888888889999999766677655 788888999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
+||..| +++....++.....+.+.....+++++.+.++ .....+..+.. .++-.......+....++....
T Consensus 86 ~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~i~~-~~~~~lN~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 86 WGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------IPTWVSAAVFF-VVINAINLTNVKVFGEMEFWFA 156 (456)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------CcHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHH
Confidence 999888 88888888888777777777777776655322 11122222222 2222222334445544444333
Q ss_pred HHHHHH---HHH-Hhhhccc--ccCCCCccccCCCCCc-hhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCC
Q 014861 184 VMSLSY---STI-AWVVPLE--KGVEPDVDYSYNAKST-TDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 256 (417)
Q Consensus 184 ~~~~~~---~~~-~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~ 256 (417)
...+.. +++ .+..... +.+....+..+++..+ +..+.++..+++...|+|.|........+|+ |||+|
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r- 231 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ- 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-
Confidence 322211 111 1111111 1111111111111111 3346677788889999999999999999999 88876
Q ss_pred CcchHHHHHHHHHHHHHHhHh
Q 014861 257 PMWKGVVVAYIIVAICYFPVA 277 (417)
Q Consensus 257 ~~~~~~~~a~~~~~~~y~~~g 277 (417)
+.+|++..+.....++|...-
T Consensus 232 ~iPrAi~~~~~~i~~~y~~~~ 252 (456)
T PRK10238 232 SIPKATNQVIYRILIFYIGSL 252 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688999888888888886653
No 34
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.45 E-value=1.9e-10 Score=114.99 Aligned_cols=239 Identities=13% Similarity=0.162 Sum_probs=154.0
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+.+|+.+.++.++..+++++|+|++.+|.. .+.+|- ..++..++.+++.......+.|...+.|..+ ...+.+++.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~ 82 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQEN 82 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 456889999999999999999999999987 555564 5688888889999999999999776676544 677788999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
+||.+| +++....++.....+.......+.+.+.+.+. .....+.+. .++++-....+..+....++....
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 83 LGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------VPHWIWVLS-VVLIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CChHHHHHH-HHHHHHHHHHccchhHHHHHHHHH
Confidence 999888 77887777666555555445555554443321 111222222 222233334445565555544333
Q ss_pred HHHHHHHHHH-------hhhccccc-CCCCccccCC-CCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCC
Q 014861 184 VMSLSYSTIA-------WVVPLEKG-VEPDVDYSYN-AKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPS 254 (417)
Q Consensus 184 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~ 254 (417)
...+..+.++ ......+. ...+.+..++ ....+.++.++..++....|+|.|........+|+ |||+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~ 229 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPE 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChh
Confidence 3222111111 01111111 1111111111 11224456678889999999999999999999999 8887
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhhhh
Q 014861 255 KGPMWKGVVVAYIIVAICYFPVALVG 280 (417)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~y~~~g~~g 280 (417)
| +.+|++..+.....++|.......
T Consensus 230 k-~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 230 K-SIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 578999888888888888775554
No 35
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.41 E-value=3.8e-10 Score=113.15 Aligned_cols=247 Identities=16% Similarity=0.123 Sum_probs=152.5
Q ss_pred CCCchhHHHHHHHHhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCC
Q 014861 28 RNAKWWYSAFHNVTAMVGAGVLSLPYAMS-HLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGD 106 (417)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 106 (417)
|+.+.++.++..+++++|+|++.+|.... .+|....+...++.++........+.|...+.|+.+ -...+.+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 57899999999999999999999998744 555333455678888888888888999776666521 1456669999999
Q ss_pred cccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhH-HHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q 014861 107 KLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWI-MIFAAIHFVLSHLPNFNSISVVSLAAAVM 185 (417)
Q Consensus 107 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~~~~l~~~s~~~~~~ 185 (417)
..| +++....++.......++.....+.+....+.... +.+...+. .+..+..+-....+..+..++++.+..+.
T Consensus 80 ~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 80 FMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG---GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 888 77787777766555566666555555544433210 11111111 11111222233345566666665555443
Q ss_pred HHHHHHHHhh--hcccccCCCCcc-c-cC-CCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcch
Q 014861 186 SLSYSTIAWV--VPLEKGVEPDVD-Y-SY-NAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWK 260 (417)
Q Consensus 186 ~~~~~~~~~~--~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~ 260 (417)
.++.+.++++ ....++.....+ + +. +...+...+.++..++....|+|.|.+......+|. ||+ ++.+|
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~~--k~ip~ 229 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EKR--SDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cCc--ccchH
Confidence 3321111111 111111110000 0 00 001122335566788899999999999999999998 653 45779
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccc
Q 014861 261 GVVVAYIIVAICYFPVALVGYYIFG 285 (417)
Q Consensus 261 ~~~~a~~~~~~~y~~~g~~gy~~fG 285 (417)
++..+...+.++|.+..+..+...+
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999998877655443
No 36
>PRK10836 lysine transporter; Provisional
Probab=99.40 E-value=4.6e-10 Score=113.19 Aligned_cols=244 Identities=14% Similarity=0.179 Sum_probs=147.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+.+|+.+.++.++..+++++|+|++..|.. .+++|-...+...+++++++...+..+.|...+.|..+ .....+++.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~ 89 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNY 89 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Confidence 467889999999999999999999999974 66777544688888899999999999999877777765 778888889
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHH--
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLA-- 181 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~-- 181 (417)
+|+.+| +++....++................++.+ .+ +.....+..+. ++++-.......+..+..+..
T Consensus 90 ~g~~~g-f~~Gw~~~~~~~~~~a~~~~a~~~~~~~~----~~---~~~~~~~~~~~-~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 90 VEEGFG-FALGWNYWYNWAVTIAVDLVAAQLVMSWW----FP---DTPGWIWSALF-LGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CC---CCchHHHHHHH-HHHHHHHHHHcchhhhhhHHHHH
Confidence 999888 66776655543332222222222222221 11 11111122222 222222233344443333322
Q ss_pred -HHHHHHH-HHH--HHhhhcccccCC-CCc-cccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCC
Q 014861 182 -AAVMSLS-YST--IAWVVPLEKGVE-PDV-DYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 255 (417)
Q Consensus 182 -~~~~~~~-~~~--~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~ 255 (417)
..+..++ +++ ++......++.. .+. +...+..+.+..+..+........|+|.|...+....+|+ |||+|
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r 236 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAK 236 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHH
Confidence 2221111 111 111111111111 011 1110111122345566666667789999999999999999 88876
Q ss_pred CCcchHHHHHHHHHHHHHHhHhhhhhhcc
Q 014861 256 GPMWKGVVVAYIIVAICYFPVALVGYYIF 284 (417)
Q Consensus 256 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 284 (417)
+++|++..++....++|.+.........
T Consensus 237 -~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 237 -NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 6889999999999999998876554444
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.38 E-value=4.1e-10 Score=112.20 Aligned_cols=239 Identities=11% Similarity=0.095 Sum_probs=153.9
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
+.+|+.+.++.....++.++|......+...++.|+..-+...++.+++.......+.|...+.|+++ ......++.+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~ 81 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAF 81 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHh
Confidence 35788999999999999999855566678888888864455566667777777788888776677654 6777889999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
||++| +++....++.......++....++++..+++.. ....+. +....++-....+..+...+++....+
T Consensus 82 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~-~~~~~~~~~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 82 GPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAA-LVFYIVFIGINILGVGEAAKLEFVVTA 152 (442)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99888 788888887777777777888888877665431 111111 122222222333345555555444333
Q ss_pred HHHHHHHHHhhhcccccCCCCc-cccC-C-CCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchH
Q 014861 185 MSLSYSTIAWVVPLEKGVEPDV-DYSY-N-AKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKG 261 (417)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~ 261 (417)
..++.+.+.......+....+. .... + +...+..+.++..++....|+|.|+.......+|+ |||+| +.+|+
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~ipra 227 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPRG 227 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCHH
Confidence 2222111111111111110010 0000 0 11112345678888999999999999999999999 88876 67899
Q ss_pred HHHHHHHHHHHHHhHhhh
Q 014861 262 VVVAYIIVAICYFPVALV 279 (417)
Q Consensus 262 ~~~a~~~~~~~y~~~g~~ 279 (417)
+..+..++.++|+..-..
T Consensus 228 i~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 228 LIGAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988876443
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.38 E-value=1.2e-10 Score=117.85 Aligned_cols=247 Identities=11% Similarity=0.151 Sum_probs=149.2
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHH--HHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHH
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGI--AVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELG 100 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi--~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~ 100 (417)
++.+|+.+.++.....+++++|+|++..|.. .+++|- .|. +..++.+++.......+.|.....|.++ ......
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~-~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~ 114 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGS-VGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYI 114 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhH
Confidence 4467889999999999999999999999976 555663 343 4556777888888889999766666543 566677
Q ss_pred HhhcCCcccceehhHHHHH-HHHHHHHHHHHHhhhhHHH-HHhhhcCCcccccchhhHHH--HHHHHHHHhhCCCCchhH
Q 014861 101 QGAFGDKLGLWIVVPQQVI-VEVSTNIIYMVTGGKSFKK-AHEVICPSCKEIKTSYWIMI--FAAIHFVLSHLPNFNSIS 176 (417)
Q Consensus 101 ~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~~~~l~ 176 (417)
++.+||++| ++.....+. ...+.+..+....++++.. ..+.. ........++ ..+.++-....+..+...
T Consensus 115 ~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-----~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~ 188 (501)
T TIGR00911 115 LEVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC-----EVPEWAIRLVAVLCVLLLTLVNCLSVKWAT 188 (501)
T ss_pred HhHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 789999888 555544332 2223344444444544322 22111 1111111111 122222233344556666
Q ss_pred HHHHHHHHHHHHHHHHHhhhc---ccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCC
Q 014861 177 VVSLAAAVMSLSYSTIAWVVP---LEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKP 253 (417)
Q Consensus 177 ~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~ 253 (417)
+++.......+..++++++.. ..++...+.++...-.....+..++..++....|+|.|...+..+.+|+ |||
T Consensus 189 ~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP 264 (501)
T TIGR00911 189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNP 264 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCc
Confidence 665555544332222111111 1121111111110000111345678888999999999999999999999 888
Q ss_pred CCCCcchHHHHHHHHHHHHHHhHhhhhhhcc
Q 014861 254 SKGPMWKGVVVAYIIVAICYFPVALVGYYIF 284 (417)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 284 (417)
+| +.+|++..+...+.++|++..+......
T Consensus 265 ~r-~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 265 YR-TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 76 6889999999999999999866554333
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.37 E-value=2.2e-10 Score=114.23 Aligned_cols=239 Identities=15% Similarity=0.150 Sum_probs=147.5
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWG-PGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQG 102 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~-~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 102 (417)
+.+|+.+.++.+...++.++|+|++..|.. .++.|-. ..+..+++.+++.......+.|.....|+++ ......++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~~ 82 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLKN 82 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHHH
Confidence 467889999999999999999999999987 4455643 3566677888888889999999766565543 33445678
Q ss_pred hcCCcccceehhHHHH-HHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhh--HHHHHHHHHHHhhCCCCchhHHHH
Q 014861 103 AFGDKLGLWIVVPQQV-IVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYW--IMIFAAIHFVLSHLPNFNSISVVS 179 (417)
Q Consensus 103 ~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~--~~i~~~~~~pl~~~~~~~~l~~~s 179 (417)
.+||.+| ++.....+ .........+....++++....+ ++.... ..+.....+-....+..+...+++
T Consensus 83 ~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~ 153 (445)
T PRK11357 83 AGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQ 153 (445)
T ss_pred hcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8999888 66666533 22333344455555555543221 111111 111122222223345555555555
Q ss_pred HHHHHHHHHHHHHHhh--hcccccCCCCccccCCC-CCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCC
Q 014861 180 LAAAVMSLSYSTIAWV--VPLEKGVEPDVDYSYNA-KSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 256 (417)
Q Consensus 180 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~ 256 (417)
.......++.+.+++. ....++. +.+...+. .....++.++..++....|+|.|.+......+|+ |||+|
T Consensus 154 ~~~~~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r- 226 (445)
T PRK11357 154 TLITIAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK- 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-
Confidence 5544433321111111 1111111 11100000 0111125667788999999999999999999999 88876
Q ss_pred CcchHHHHHHHHHHHHHHhHhhhhh
Q 014861 257 PMWKGVVVAYIIVAICYFPVALVGY 281 (417)
Q Consensus 257 ~~~~~~~~a~~~~~~~y~~~g~~gy 281 (417)
+.+|++..++.++.++|.+......
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998766543
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.36 E-value=8.3e-10 Score=111.17 Aligned_cols=238 Identities=12% Similarity=0.130 Sum_probs=155.4
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCC-cccCcHHHHHHhhc
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPG-KRFDRYHELGQGAF 104 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~l~~~~~ 104 (417)
+|+.+.++..+..++.++|+|++..|.. .+++|-...+...++.+++.......+.|.....|. .. .|.+.+++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG--~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG--SFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHc
Confidence 4678999999999999999999988755 666664333666788888899999999997766763 22 6888999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
||++| +++....++.....+.+.....+.+++.+.+ +.....|..+. .+++-+...+..+...+++.....
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------KVNPAVWIAIF-YVFIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHH
Confidence 99988 8888888877776667777776666654321 11222233222 222223344556666665544432
Q ss_pred HHH---HHHHHHhhhcccccC-CCC---cc-c-cCCCCCch---hhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCC
Q 014861 185 MSL---SYSTIAWVVPLEKGV-EPD---VD-Y-SYNAKSTT---DAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEK 252 (417)
Q Consensus 185 ~~~---~~~~~~~~~~~~~~~-~~~---~~-~-~~~~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 252 (417)
..+ ...+++.......+. ... .. . +.+...+. ..+.++..++....|+|.|........+|+ ||
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----kn 225 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----AN 225 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----cC
Confidence 211 111111111111111 000 00 0 00011111 135678889999999999999999999999 88
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhHhhhh
Q 014861 253 PSKGPMWKGVVVAYIIVAICYFPVALVG 280 (417)
Q Consensus 253 ~~~~~~~~~~~~a~~~~~~~y~~~g~~g 280 (417)
|+| +.+|++..+...+.++|.+..+..
T Consensus 226 P~r-~iPrai~~~~~~~~~~Y~l~~~~~ 252 (478)
T TIGR00913 226 PRK-SIPRAAKRTFWRILVFYILTLFLI 252 (478)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876 688999999999999999976543
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.35 E-value=1.5e-09 Score=108.14 Aligned_cols=274 Identities=11% Similarity=0.102 Sum_probs=163.3
Q ss_pred HHHhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcccceehhHHH
Q 014861 39 NVTAMVGAGVLSLPY-AMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQ 117 (417)
Q Consensus 39 l~~~~iG~GiL~lP~-~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~ 117 (417)
.+++++|+|++..|. +.+++|. ..++..++.+++....+..+.|...+.|..+ ...+.+++.+||++| +.+....
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~ 78 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWLY 78 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHHH
Confidence 367899999999997 5778885 5888888899999999999999876677655 788999999999888 7788777
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 014861 118 VIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVP 197 (417)
Q Consensus 118 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~ 197 (417)
++.....+.......+..++.+.+. .....+ .+..+.++-+...+..+..+.++.......++.++.+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMILHSWVPG-------IPIWLF-SLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-------CcHHHH-HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 7766555555544444444333211 111111 12222222233344555555554444332222111111111
Q ss_pred c--cccCCC-----CccccCC-CCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHHH
Q 014861 198 L--EKGVEP-----DVDYSYN-AKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIV 269 (417)
Q Consensus 198 ~--~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~ 269 (417)
+ ..+..+ +..+.++ ....+..+.++..++....|+|.|.+.+....+|+ |||+| +++|++..+....
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~i 225 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWRI 225 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHHH
Confidence 1 111111 1101011 11123456789999999999999999999999999 88876 6889999999999
Q ss_pred HHHHHhHhhhhhhcccCCC------h--HHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHH
Q 014861 270 AICYFPVALVGYYIFGNTV------E--DNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIE 330 (417)
Q Consensus 270 ~~~y~~~g~~gy~~fG~~~------~--~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~ 330 (417)
.++|++..+........+. . ....+.... ++...+.....++..+.+..-.++...+.+.
T Consensus 226 ~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~ 293 (446)
T PRK10197 226 SIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLY 293 (446)
T ss_pred HHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987665333322111 0 122333332 3344445555555555554444444444433
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.31 E-value=5.4e-10 Score=106.44 Aligned_cols=284 Identities=12% Similarity=0.164 Sum_probs=185.6
Q ss_pred CCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcc
Q 014861 29 NAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKL 108 (417)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 108 (417)
|.|.+|....+..+++|+|++.+|....+.+- .|.+..++.+........++.+..+++|++ |..|+.++.+||..
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 56889999999999999999999998665542 455555555666666666666665566665 89999999999988
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHH-HHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 014861 109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIM-IFAAIHFVLSHLPNFNSISVVSLAAAVMSL 187 (417)
Q Consensus 109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 187 (417)
| .++.+...++.+......+...+|.++...-. +...+.+ ...+...--...+.++.+.+.+.+-....+
T Consensus 77 g-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp--------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~ 147 (320)
T PF03845_consen 77 G-KIINLLYILYFLLISALVLREFSEFIKTYLLP--------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFL 147 (320)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8 57777777777777777777777766665311 1123332 233333333445678888876655555444
Q ss_pred HHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHH
Q 014861 188 SYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYI 267 (417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~ 267 (417)
.....+......+.+..+.. ...+.++.+...+.....+.|.+......+...+ |||++. +|....+..
T Consensus 148 i~~~~i~~~~~~~~~~~~l~-----P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~k~~~~~~~ 216 (320)
T PF03845_consen 148 ILLLLILLLSIPNIDWDNLL-----PVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKL--KKSLLIAIL 216 (320)
T ss_pred HHHHHHHHHhcccCCHHHee-----CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHH--HHHHHHHHH
Confidence 33333333333222111111 2234567788888888888899888888888888 666554 489999999
Q ss_pred HHHHHHHhHhhhhhhcccCCChH-------HHhhCCCCc---hHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhh
Q 014861 268 IVAICYFPVALVGYYIFGNTVED-------NILLTLEKP---IWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQ 336 (417)
Q Consensus 268 ~~~~~y~~~g~~gy~~fG~~~~~-------~il~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~ 336 (417)
.+.++|...-+.....||.+..+ +.....+-+ +..-.+.-..-......+.-+..+...+.+.+.++.+
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999864322 111111111 1122223334455566666777888888888888654
No 43
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.27 E-value=9.5e-10 Score=109.13 Aligned_cols=289 Identities=13% Similarity=0.145 Sum_probs=176.5
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcc
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVT-LYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKL 108 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 108 (417)
.|+++.+...++.++|+|++..| ...+.|.. .++..++.+.+. ......+.|...+.|+++ ...+..++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 36889999999999999999999 77676664 666666666665 677778888765566554 77888999999998
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccc-hhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 014861 109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKT-SYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSL 187 (417)
Q Consensus 109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 187 (417)
| ++......+.......++.....+++...++... .+.+. .....+..++.+-....+..+..++++.......+
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDL---NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG---TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhcccccc---ccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 8 7788888777777777777777776655543210 01111 11112222233333444566666666666655444
Q ss_pred -HHHHHHhhhcccccCCCCccc--cCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHH
Q 014861 188 -SYSTIAWVVPLEKGVEPDVDY--SYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV 264 (417)
Q Consensus 188 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~ 264 (417)
..+.+++...+.....+..+. +..+...+..+.....+++..+|+|.|.+......+|+ || |+.+|++..
T Consensus 153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~ai~~ 225 (426)
T PF13520_consen 153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRAIII 225 (426)
T ss_dssp HHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHHHHH
T ss_pred hhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc---hhheeeccc
Confidence 222222222222221111110 00001111233346788999999999999999999998 55 357799999
Q ss_pred HHHHHHHHHHhHhhhhhhcccCCChH---H-------HhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHh
Q 014861 265 AYIIVAICYFPVALVGYYIFGNTVED---N-------ILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLV 334 (417)
Q Consensus 265 a~~~~~~~y~~~g~~gy~~fG~~~~~---~-------il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~ 334 (417)
+...+.++|.+.........+++..+ + ..+... .++...+..+...+..+.+.........+.+...-+
T Consensus 226 ~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 226 SIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhccccccc
Confidence 99999999999987766665543211 1 111111 134555556666666666666655555555555443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.16 E-value=5.9e-09 Score=104.61 Aligned_cols=252 Identities=14% Similarity=0.177 Sum_probs=162.3
Q ss_pred ccccCCCchhH-HHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHh
Q 014861 24 ITSSRNAKWWY-SAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQG 102 (417)
Q Consensus 24 ~~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~ 102 (417)
++.+++.+.++ ......++++|.|++.+|......+ .......++.+++..+....+.|...+.|+.+ .+.+..++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~ 84 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKR 84 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhh
Confidence 34566778888 8999999999999999999887766 22333345566666666777777665566654 78889999
Q ss_pred hcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHH--HHHHHHHhhCCCCchhHHHHH
Q 014861 103 AFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIF--AAIHFVLSHLPNFNSISVVSL 180 (417)
Q Consensus 103 ~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~--~~~~~pl~~~~~~~~l~~~s~ 180 (417)
.+||+.| +.+....++.......+........+....+.... .......+..+. ...++-+...+..+...+...
T Consensus 85 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 85 ALGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGL--LSIGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred hcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999888 78888888888777777777777766666543100 001111222222 222233333445555555555
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcch
Q 014861 181 AAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWK 260 (417)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~ 260 (417)
...+..++..+++.............+...+..........+..++....++|.|.....+..+|+ |||+| +.+|
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r-~ip~ 236 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKR-TIPR 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCccc-cccH
Confidence 555544433332222222222111111000001022344578889999999999999999999999 77766 4779
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccC
Q 014861 261 GVVVAYIIVAICYFPVALVGYYIFGN 286 (417)
Q Consensus 261 ~~~~a~~~~~~~y~~~g~~gy~~fG~ 286 (417)
++..++..+.++|.+.........++
T Consensus 237 aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 237 AIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99999999999999998887776654
No 45
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.11 E-value=2.2e-09 Score=107.83 Aligned_cols=302 Identities=10% Similarity=0.078 Sum_probs=199.0
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCc-ccCcHHHHHH
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSL-PYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGK-RFDRYHELGQ 101 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~l-P~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~~~y~~l~~ 101 (417)
.+.+|+.+.++-.+.-++.++|+|++-. ..+.++.|-..-++..++.+...++++..+.|..-+.|.. + ++...++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~ 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAY 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeee
Confidence 4668899999999999999999999554 5667787776666677778899999999999977667763 3 7888888
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHh--hhcCCcccccchhhHHH--HHHHHHHHhhCCCCchhHH
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHE--VICPSCKEIKTSYWIMI--FAAIHFVLSHLPNFNSISV 177 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~--~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~~~~l~~ 177 (417)
+..|+-+| +.+..-.++.....+.+-+...+.+++.+.. ......+..+...|..+ ..++++-+.-.|-..+.++
T Consensus 104 ~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 104 RFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 99999888 8899999999999999999999999988860 00000011222223222 2333344444554455555
Q ss_pred HHHHHHHHHHH---HHHHHhhhcccccCC-C--Cccc-cCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCC
Q 014861 178 VSLAAAVMSLS---YSTIAWVVPLEKGVE-P--DVDY-SYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTP 250 (417)
Q Consensus 178 ~s~~~~~~~~~---~~~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 250 (417)
......+.+++ .+.+++.....+.+. + +.++ ..+..-.+..+.++..++..+.|+|.|-..+-....|-
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~---- 258 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA---- 258 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----
Confidence 55555444332 122222222222211 1 1111 11112233448899999999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhHhhhhhhc--ccCC-ChHHH--------hhCCCCchHHHHHHHHHHHHHHHhhcc
Q 014861 251 EKPSKGPMWKGVVVAYIIVAICYFPVALVGYYI--FGNT-VEDNI--------LLTLEKPIWIVAAANLFVVVHVIGSYQ 319 (417)
Q Consensus 251 ~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~--fG~~-~~~~i--------l~~~~~~~~~~~~~~~~~~i~~~~s~p 319 (417)
|||+| ..++++..++..+..+|.+..+.--+. |.|. ..++. -.+.+.-.....+.+....+.++.+--
T Consensus 259 kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 259 KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 88876 688999999999999999987764332 2220 11111 111111122223667777777777777
Q ss_pred cccccHHHHHHHHH
Q 014861 320 IFAMPVFDMIETFL 333 (417)
Q Consensus 320 l~~~~~~~~l~~~~ 333 (417)
-.++++-+.+..+-
T Consensus 338 ~~~y~~sR~l~amA 351 (554)
T KOG1286|consen 338 SSLYAGSRVLYALA 351 (554)
T ss_pred HHhHHhHHHHHHHH
Confidence 77888877777763
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.07 E-value=2.3e-07 Score=90.76 Aligned_cols=295 Identities=12% Similarity=0.131 Sum_probs=203.3
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+-+|+...++-.+.-++..||+|+ ++.-.+.+++|-...++..++.+.+.++.++.+.|.+-..|..+ +|...+.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 367889999999999999999998 67888999999887888889999999999999999876677543 799999999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhh--CCCCchhHHHH-H
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSH--LPNFNSISVVS-L 180 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~~~~l~~~s-~ 180 (417)
.+|.+| ..+....+++..-++..-++..+..++.+.+. ..+...|..++.++++.+.. .|...+..++- .
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPD------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 999999 88899999999999999999998888877533 13456777777666655544 67777776664 4
Q ss_pred HHHHHHHHHHHHHhh--hcccccCCC-CccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCC
Q 014861 181 AAAVMSLSYSTIAWV--VPLEKGVEP-DVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 257 (417)
Q Consensus 181 ~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~ 257 (417)
+=+++++.++++-++ ......+.+ +.++-.+....+.++.++...+-...|+|.|-..+--...|- +||+| .
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K-~ 266 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRK-S 266 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchh-h
Confidence 444433333332222 222211111 112212223345668899999999999999999999999998 88877 5
Q ss_pred cchHHHHHHHHHHHHHHhHhhhh-hh-cccCC----------ChHH---HhhCCCCchHHHHHHHHHHHHHHHhhccccc
Q 014861 258 MWKGVVVAYIIVAICYFPVALVG-YY-IFGNT----------VEDN---ILLTLEKPIWIVAAANLFVVVHVIGSYQIFA 322 (417)
Q Consensus 258 ~~~~~~~a~~~~~~~y~~~g~~g-y~-~fG~~----------~~~~---il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 322 (417)
++|++.-...-..++|++.-+.- .+ -|.|. .++. ++.|.+ -.....+.+....++++.+---.+
T Consensus 267 iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~G-i~~~~~imNaVIL~svlSa~NS~l 345 (541)
T COG0833 267 IPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAG-IPVAASIMNAVILTSVLSAANSGL 345 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcC-CccchHHHHHHHHHHHHHHhhccc
Confidence 88999988888888887754432 22 22220 1111 222222 123344455555555555555556
Q ss_pred ccHHHHHHHHHh
Q 014861 323 MPVFDMIETFLV 334 (417)
Q Consensus 323 ~~~~~~l~~~~~ 334 (417)
+...+.+..+-.
T Consensus 346 YasSR~L~sLA~ 357 (541)
T COG0833 346 YASSRMLYSLAK 357 (541)
T ss_pred hHHHHHHHHHHh
Confidence 666666666544
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.06 E-value=3.4e-07 Score=92.14 Aligned_cols=252 Identities=11% Similarity=0.017 Sum_probs=147.8
Q ss_pred ccccCCCchhHHHHHHHHhh-hhhhhchHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHH
Q 014861 24 ITSSRNAKWWYSAFHNVTAM-VGAGVLSLPYAM-SHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQ 101 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~~~-~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 101 (417)
++-+|+.+.++....-.+.+ +|+|+...|..- .+.|- ..+...++.++........+.|...+.|..+ ......+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~ 85 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSR 85 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHH
Confidence 34678899999998888875 899998888764 45554 5666777788888888999999776677654 6677788
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhc--CCcccc---cch--hhHHH-HHHHHHHHhhCCCCc
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVIC--PSCKEI---KTS--YWIMI-FAAIHFVLSHLPNFN 173 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~---~~~--~~~~i-~~~~~~pl~~~~~~~ 173 (417)
+.+||++| +++....++.......+........+..+.+... ....++ ... .+.+. ..+.+.-+...+..+
T Consensus 86 ~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 86 RMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999888 7777777766554444444444444433321110 000011 011 11111 122222223344555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccCC-CC--ccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCC
Q 014861 174 SISVVSLAAAVMSLSYSTIAWVVPLEKGVE-PD--VDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTP 250 (417)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 250 (417)
...+++....+..+..+++++.......+. +. .+...+.. .+.....+..+.....|+|.|......+.+|+
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~---- 239 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGA-SPGYYGAFLVSGLMAAYVMVGFGSAGELSEET---- 239 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCC-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----
Confidence 566655554443332222211111111111 11 11110000 11113345556677889999999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhHhhhhhhccc
Q 014861 251 EKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFG 285 (417)
Q Consensus 251 ~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 285 (417)
|||+| +.+|++..+..+..++|.+.-+......+
T Consensus 240 knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 240 KNPRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred cCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88877 68899999999888766665554444333
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.92 E-value=2.9e-06 Score=85.87 Aligned_cols=239 Identities=15% Similarity=0.153 Sum_probs=132.1
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcchhcCC-cccCcHHHHHHhh
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVT-LYTLWQMVEMHEMVPG-KRFDRYHELGQGA 103 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~-~~s~~~l~~~~~~~~~-~~~~~y~~l~~~~ 103 (417)
.+||.|.++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ......+.|.....|+ .+ .-....+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 3678999999999999999976 568888888864 555555555443 4466678887655664 23 667788889
Q ss_pred cCCcccceehhHHHHHHHHHHH---HH-------HHHHhhhhHHHHHhhhcCCcccccch-hhHHHHHHH--HHHHhhCC
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTN---II-------YMVTGGKSFKKAHEVICPSCKEIKTS-YWIMIFAAI--HFVLSHLP 170 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~---~~-------y~i~~~~~l~~~~~~~~~~~~~~~~~-~~~~i~~~~--~~pl~~~~ 170 (417)
+||++| ++.....+....... .+ +.. .+.+..+..+. .+.+.. .+.++..+. ++-....|
T Consensus 80 ~G~~~g-f~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 80 VGPKFA-FIGTFMWFASYIIWMVSTASKIWIPFSTFI-FGKDTTQTWHF-----LGLNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchhhhhhh-----hcccchHHHHHHHHHHHHHHHHHHcc
Confidence 999998 444333222221111 11 111 11111110000 011111 111222222 23334456
Q ss_pred CCchhHHHHHHHHHHHHH----HHHHHhhhcccccCCC--Ccc-ccC-CC-CCchhhHhHHHHHHHhHhhhccCccchhh
Q 014861 171 NFNSISVVSLAAAVMSLS----YSTIAWVVPLEKGVEP--DVD-YSY-NA-KSTTDAMFNFFTALGDVAFAYAGHNVVLE 241 (417)
Q Consensus 171 ~~~~l~~~s~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~-~~~-~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 241 (417)
..+..++++.++....+. .+++........+... +.+ .++ +. .+...+..++..++....|+|.|.+.+..
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 666666666544332221 1111111111111110 110 000 00 01111123566778889999999999999
Q ss_pred hhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHHhHhhhhh
Q 014861 242 IQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGY 281 (417)
Q Consensus 242 i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy 281 (417)
..+|+ |||+| +.+|++..+...+.++|.+..+...
T Consensus 233 ~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 233 LVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 88876 6889999999999999998755443
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.89 E-value=1.2e-08 Score=102.70 Aligned_cols=239 Identities=13% Similarity=0.183 Sum_probs=149.3
Q ss_pred HHHhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcccceehhHHH
Q 014861 39 NVTAMVGAGVL-SLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQ 117 (417)
Q Consensus 39 l~~~~iG~GiL-~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~ 117 (417)
.+..++|+|++ ..+.+..+.|....++..++.+++.......+.|..++.|... ++.+.+++.+||+.| ..+.+..
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~G-f~~gw~y 82 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALG-FAAGWAY 82 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCC-ceeeHHH
Confidence 45678888884 5566788888766788888999999999999999877666544 788999999999999 7888887
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH--HhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 014861 118 VIVEVSTNIIYMVTGGKSFKKA--HEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWV 195 (417)
Q Consensus 118 ~~~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~ 195 (417)
++.............+..++.+ .++... .+.....+..+..+++..+.+ ...+..+.+...-....++.++..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~ii 159 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFWGYFPGLPS--TWVWGILIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFII 159 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhccccccccccc--cccccchhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhhh
Confidence 7777777776666666655554 222110 000000122233223222222 23333333222222211111111111
Q ss_pred hc-c--cccCCCCcc------c----cCCC---CCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcc
Q 014861 196 VP-L--EKGVEPDVD------Y----SYNA---KSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 259 (417)
Q Consensus 196 ~~-~--~~~~~~~~~------~----~~~~---~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 259 (417)
.. + ..+..+... . ..+. .+...++.++..++...+++|.|...+....+|. |||+| +++
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-~IP 234 (478)
T PF00324_consen 160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-TIP 234 (478)
T ss_pred hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-hhh
Confidence 11 1 111111101 0 0000 1112347889999999999999999999999999 88887 688
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhcccCCC
Q 014861 260 KGVVVAYIIVAICYFPVALVGYYIFGNTV 288 (417)
Q Consensus 260 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 288 (417)
|++..++....++|.+.....-...+.+.
T Consensus 235 ra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 235 RATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 99999999999999998887766666443
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.87 E-value=2e-06 Score=86.57 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=121.5
Q ss_pred CCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhcchhcCCcccCcHHHHHHhhcCCc
Q 014861 29 NAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTL-YTLWQMVEMHEMVPGKRFDRYHELGQGAFGDK 107 (417)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~ 107 (417)
|.+.+.-++....++++ +-.+|.. ++.|.. .++..++.+++.. -......|.....|+++ ......++++||+
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcChh
Confidence 35555555555454544 5555755 567753 4444444444443 46667777665566543 6778889999999
Q ss_pred ccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccc-cchhhHHHHHH---HHHHHhhCCCCchhHHHHHHHH
Q 014861 108 LGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEI-KTSYWIMIFAA---IHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 108 ~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~---~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
+| +......++.......+-+...+..+....+... ..... ...++.....+ ..+-....+..+....++....
T Consensus 76 ~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 76 WG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT-VDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88 6666666655422111111111111111111100 00011 11222212222 1223344556666656654432
Q ss_pred HH-HH---HHHHHHhhhcccccCCCCccccCCC-CCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCc
Q 014861 184 VM-SL---SYSTIAWVVPLEKGVEPDVDYSYNA-KSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 258 (417)
Q Consensus 184 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~ 258 (417)
.. .+ ..+++........+..+..+.+.++ .+...++.....+. ...|+|.|.+......+|+ |||+| +.
T Consensus 154 ~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~----knP~r-~i 227 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDV----DNPDK-NY 227 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhc----cCccc-ch
Confidence 11 11 1111110111111111111111000 11111233333333 4578999999999999999 88877 68
Q ss_pred chHHHHHHHHHHHHHHhHhhhhhhccc
Q 014861 259 WKGVVVAYIIVAICYFPVALVGYYIFG 285 (417)
Q Consensus 259 ~~~~~~a~~~~~~~y~~~g~~gy~~fG 285 (417)
+|++..+...+.++|++..+......+
T Consensus 228 PrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 228 PIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999887666544443
No 51
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.86 E-value=6.5e-06 Score=83.06 Aligned_cols=247 Identities=13% Similarity=0.045 Sum_probs=134.6
Q ss_pred cccCCCchhHHHHHHHHhhhh--hhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHH
Q 014861 25 TSSRNAKWWYSAFHNVTAMVG--AGVLS-LPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQ 101 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG--~GiL~-lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 101 (417)
+.+|+.+.++....-... +| +|+.. .+.+.++.|-..-+...++.+++.......+.|...+.|..+ .....++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~ 85 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSA 85 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHH
Confidence 356778888887777774 44 56644 344666777654566788888999999999999776677654 6777788
Q ss_pred hhcCCccccee---hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCc-ccccchhhHHHH--HHHHHHHhhCCCCchh
Q 014861 102 GAFGDKLGLWI---VVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSC-KEIKTSYWIMIF--AAIHFVLSHLPNFNSI 175 (417)
Q Consensus 102 ~~~G~~~g~~~---v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~--~~~~~pl~~~~~~~~l 175 (417)
+++|+++|+.. +.....+.....+.+.....++++........+.. ...+......+. ...++-+...+..+.+
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 88887666443 33334444444444455555555555432211110 001111111121 1222223333444555
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhcc-cccCCCCccccC----CCC-CchhhHhHHHHHHHhHhhhccCccchhhhhhcCCc
Q 014861 176 SVVSLAAAVMSLSYST-IAWVVPL-EKGVEPDVDYSY----NAK-STTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPS 248 (417)
Q Consensus 176 ~~~s~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (417)
..++....+..++..+ +.+.... .+......+... ++. .+..+...+..++....|+|.|........+|+
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~-- 243 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI-- 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc--
Confidence 5554443333222111 1111111 111101001000 110 111111245555666789999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHhHhhh
Q 014861 249 TPEKPSKGPMWKGVVVAYIIVAICYFPVALV 279 (417)
Q Consensus 249 ~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 279 (417)
|||+| +++|++..+..+..+++.+..+.
T Consensus 244 --knP~r-~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 244 --ENPEV-VGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred --CChhh-hcCHHHHHHHHHHHHHHHHHHHH
Confidence 88876 68899999988777655444433
No 52
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.80 E-value=5.6e-06 Score=83.83 Aligned_cols=236 Identities=9% Similarity=0.043 Sum_probs=120.4
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH--HHHHHHHHhcchhcC-CcccCcHHHHHHhh
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVT--LYTLWQMVEMHEMVP-GKRFDRYHELGQGA 103 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~--~~s~~~l~~~~~~~~-~~~~~~y~~l~~~~ 103 (417)
++|.+.++-++.....++ ++-.+| .+++.|+ +.+...+.+.+. .-......|.....+ .++ .....++++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~wv~~a 75 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAWVSNT 75 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeeehhhc
Confidence 466888888777777665 457888 4677784 444444444443 346777888654333 222 567788999
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHH---HHHHHhhCCCCchhHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAA---IHFVLSHLPNFNSISVVSL 180 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~---~~~pl~~~~~~~~l~~~s~ 180 (417)
+|+++| ++..+..++.......+........+...... ... ..+ .++..+..+ ..+-+...+..+...+++.
T Consensus 76 ~G~~~G-f~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~--~~~-~~~-~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~ 150 (507)
T TIGR00910 76 LGERFG-FAAIFFGWFQIAIGFIPMIYFILGALSYILKF--PAL-NED-PIIKFIAALIIFWALAFSQFGGTKRTAKIAK 150 (507)
T ss_pred cCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chh-ccC-cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999 55555555544322222111111111111110 000 011 122222221 2222333444555555444
Q ss_pred HHHHHHH-HHHHHH---hhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCC
Q 014861 181 AAAVMSL-SYSTIA---WVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 256 (417)
Q Consensus 181 ~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~ 256 (417)
.+.+... +..+++ .......+.....+.+.+...+.....+....+...+|+|.|........+|+ |||+|
T Consensus 151 i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~----knP~r- 225 (507)
T TIGR00910 151 AGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL----ENPGR- 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-
Confidence 4332111 111111 11111222211111110011011111123345555689999999999999999 88876
Q ss_pred CcchHHHHHHHHHHHHHHhHhhh
Q 014861 257 PMWKGVVVAYIIVAICYFPVALV 279 (417)
Q Consensus 257 ~~~~~~~~a~~~~~~~y~~~g~~ 279 (417)
+.+|++..+..++.++|.+..+.
T Consensus 226 ~~PrAi~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 226 DYPLAMILLMIAAICLDAIGGFS 248 (507)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999875543
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.65 E-value=2.4e-07 Score=78.61 Aligned_cols=213 Identities=15% Similarity=0.184 Sum_probs=136.1
Q ss_pred CCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcch------------hcCCcc----
Q 014861 29 NAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHE------------MVPGKR---- 92 (417)
Q Consensus 29 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~------------~~~~~~---- 92 (417)
..|...+..-+.|-++|+|-|++|.+|+.+||.+++.++.+.+.+++.+....+|... +..+.+
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 3455667788899999999999999999999999999999999999998888877421 000000
Q ss_pred --------------------------------------cCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhh
Q 014861 93 --------------------------------------FDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGK 134 (417)
Q Consensus 93 --------------------------------------~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~ 134 (417)
+...++++...|.+ .|-.+.-+++++++||-...|....-.
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpf 169 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPF 169 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCch
Confidence 12366788888874 787778888999999999999877766
Q ss_pred hHHHHHhhhcC--Ccc-------c-ccc------------hhhHHHHHH-HHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 014861 135 SFKKAHEVICP--SCK-------E-IKT------------SYWIMIFAA-IHFVLSHLPNFNSISVVSLAAAVMSLSYST 191 (417)
Q Consensus 135 ~l~~~~~~~~~--~~~-------~-~~~------------~~~~~i~~~-~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~ 191 (417)
.+-++.....+ +|. + .++ +.+..++.+ +.+|+.+. ++...++++.+....-.+...
T Consensus 170 s~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~ 248 (319)
T KOG3832|consen 170 SAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFI 248 (319)
T ss_pred HhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhcc
Confidence 55555433222 111 1 111 222333322 22354443 566667777766665444222
Q ss_pred HHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCC
Q 014861 192 IAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIP 247 (417)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 247 (417)
..+...-.+.. ++..+ .+++...+-++-..++...|+|.+|...|.....++
T Consensus 249 ~g~~l~tmqae-edaa~---a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq 300 (319)
T KOG3832|consen 249 LGISLATMQAE-EDAAA---AHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQ 300 (319)
T ss_pred chhhhhhhhhc-ccccc---cCCccccccccccccchhhHHHHhhccCCCCCCCCe
Confidence 22222211211 11111 222333444555668889999999999999998883
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.61 E-value=5.6e-05 Score=75.29 Aligned_cols=234 Identities=13% Similarity=0.058 Sum_probs=129.8
Q ss_pred CcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCccccc------chhhHHHHHHHHHHHh
Q 014861 94 DRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIK------TSYWIMIFAAIHFVLS 167 (417)
Q Consensus 94 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~------~~~~~~i~~~~~~pl~ 167 (417)
.++..+.|..||.+ |..+..++..+...+=........++.++.+++...+...+.. .....++...+.+++.
T Consensus 76 l~~~v~sR~~FG~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCcchhhhhhhhhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 37899999999985 6678899988999888888888999988888877653211111 1222334445555655
Q ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhc-cCccchhhhhhcC
Q 014861 168 HLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAY-AGHNVVLEIQATI 246 (417)
Q Consensus 168 ~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m 246 (417)
.....+..++....+....+....+........+...+.....++...+.....+..++...+-.+ ..-.+.+...|.+
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~ 234 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG 234 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc
Confidence 555555555555555543322222111111111111111111111122334455556555544333 3357889999998
Q ss_pred CcCCCCCCCCCcchHHHHHHHHHHHHHHhHhhhhhhc----ccCCCh--HHHhhCCCCchHHHHHHH------HHHHH-H
Q 014861 247 PSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGYYI----FGNTVE--DNILLTLEKPIWIVAAAN------LFVVV-H 313 (417)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fG~~~~--~~il~~~~~~~~~~~~~~------~~~~i-~ 313 (417)
|++++.. +....++....+...++|..+... +|+... .+....+... +.....+ +...+ .
T Consensus 235 ----~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~-~~~~~~~~~~f~~~~~vl~~ 307 (442)
T TIGR00800 235 ----KSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGL-TYAVGARAVFGFGFCFVVAQ 307 (442)
T ss_pred ----CCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhccc-chhhhHHHHHHHHHHHHHHH
Confidence 5544433 557777777888888887777665 775432 2344444322 1111111 22222 2
Q ss_pred HHhhcccccccHHHHHHHHHhh
Q 014861 314 VIGSYQIFAMPVFDMIETFLVK 335 (417)
Q Consensus 314 ~~~s~pl~~~~~~~~l~~~~~~ 335 (417)
..+..-.+.++....+.+.+++
T Consensus 308 ~~t~~~~N~ys~~l~l~~l~~~ 329 (442)
T TIGR00800 308 LSTNISANSYSAGLDIAALLPK 329 (442)
T ss_pred HHHHHHhhccchHHHHHHhCcC
Confidence 2245667778877777777754
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.29 E-value=0.0017 Score=64.07 Aligned_cols=255 Identities=12% Similarity=0.105 Sum_probs=139.4
Q ss_pred cCCCchh---HHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 27 SRNAKWW---YSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 27 ~~~~s~~---~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
+|+-+.+ ...|.+++..-|.- -++.+....+|-..-.-..++.+....+...-|.|.+...|..+ ...-=+.+.
T Consensus 47 ~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa~l 123 (550)
T KOG1289|consen 47 KREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG--GLYFWAAVL 123 (550)
T ss_pred hhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHHHh
Confidence 4555543 33344444443321 34555555555443333456677777788888888655565332 222223334
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcC--CcccccchhhHHHHHHHHHHHh--hCCCCchhHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICP--SCKEIKTSYWIMIFAAIHFVLS--HLPNFNSISVVS 179 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~~pl~--~~~~~~~l~~~s 179 (417)
-|||+|+....++-+....+-............+.++..... +..+.++.....+..++.+..+ .....+.+++++
T Consensus 124 ap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~ 203 (550)
T KOG1289|consen 124 APPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARIN 203 (550)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 478888766666655555555544444433333333322211 1222223333333333333333 333457788888
Q ss_pred HHHHHHHHHHHHHHhhhcc-cccCCCCcc---c---cC-CCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCC
Q 014861 180 LAAAVMSLSYSTIAWVVPL-EKGVEPDVD---Y---SY-NAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPE 251 (417)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~---~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 251 (417)
.+++...+...++.++... ......+.+ . ++ +...|..+...+.-++-.-.+.+.|......+..|. |
T Consensus 204 ~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~----~ 279 (550)
T KOG1289|consen 204 SVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET----K 279 (550)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh----c
Confidence 8888765543333322221 111111111 0 11 122233344556666777889999999999999999 7
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhHhhhhhhcccCCCh
Q 014861 252 KPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVE 289 (417)
Q Consensus 252 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~ 289 (417)
|+++ +.+|++..+..+..++=..+-+.-...-++|.+
T Consensus 280 nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 280 NASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred chhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 8877 578999999988888877777776666665443
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.29 E-value=0.0006 Score=62.97 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhhhhhch---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcccc
Q 014861 34 YSAFHNVTAMVGAGVLS---LPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGL 110 (417)
Q Consensus 34 ~~~~~l~~~~iG~GiL~---lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 110 (417)
.-.+..+++++|+|.-+ +=.-|..-|+. |+...++++.+-..++..+.+...+.+. .+|.|..++.+||+++
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a---~~y~~~~~~v~~~~~~- 81 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA---TSYREILKYVSGPKFA- 81 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHhhHHHH-
Confidence 34566777999999543 12345566764 7777888888888888888886654433 3899999999999999
Q ss_pred eehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 111 WIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 111 ~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
.+.|+.+.+.+++.++.-....+..+++.++- +...-.++....+..+.++++.+.+-.+..+-+-
T Consensus 82 ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 82 KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------PYWIGALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 67899999999999999998888887776533 1122224444444445556666665544443333
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.26 E-value=0.0025 Score=64.17 Aligned_cols=234 Identities=11% Similarity=0.096 Sum_probs=122.8
Q ss_pred CcHHHHHHhhcCCcccceehhHHHH-HHHHHHHHHHHHHhhhhHHHHHhhhcCCc---------ccccchhhH--HHHHH
Q 014861 94 DRYHELGQGAFGDKLGLWIVVPQQV-IVEVSTNIIYMVTGGKSFKKAHEVICPSC---------KEIKTSYWI--MIFAA 161 (417)
Q Consensus 94 ~~y~~l~~~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---------~~~~~~~~~--~i~~~ 161 (417)
.++.-+.|..||.+ |..+..+... +...+=-.......++.++.+++...+.. .+.+...+. ++..+
T Consensus 89 l~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 89 VPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 48999999999985 6567777763 45555555555566677666655543210 011111222 23344
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCccccCC-CCCchhhHhHHHHHHHhHhhhcc-Cccc
Q 014861 162 IHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEK-GVEPDVDYSYN-AKSTTDAMFNFFTALGDVAFAYA-GHNV 238 (417)
Q Consensus 162 ~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~-~~~~ 238 (417)
+..+... ...+.+++.+..+...............+.+ +..+-.+.... ..........+..++...+=++. ...+
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~ 246 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS 246 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 5555554 4567777776666654433222222222222 11111111100 01111123334444444333444 4558
Q ss_pred hhhhhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHHhHhhhh----hhcccCCC--hHHHhhCCCCchHHHHHHHHHHHH
Q 014861 239 VLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVG----YYIFGNTV--EDNILLTLEKPIWIVAAANLFVVV 312 (417)
Q Consensus 239 ~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fG~~~--~~~il~~~~~~~~~~~~~~~~~~i 312 (417)
.|...|.. |++++.. +....++.+...+...+|+.. ...+|+.. ..+++.+++. ......+-+...+
T Consensus 247 ~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~ 319 (484)
T PRK11375 247 ASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILM 319 (484)
T ss_pred ccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHH
Confidence 88888887 5555433 555566666666655555443 34555433 3355555532 3444455566666
Q ss_pred HHHhhc-ccccccHHHHHHHHHhhh
Q 014861 313 HVIGSY-QIFAMPVFDMIETFLVKQ 336 (417)
Q Consensus 313 ~~~~s~-pl~~~~~~~~l~~~~~~~ 336 (417)
+....- ..+.++.-..+..++.++
T Consensus 320 a~~~tN~~~N~ys~~~~l~~l~pk~ 344 (484)
T PRK11375 320 TTISTNATGNIIPAGYQIAALAPTK 344 (484)
T ss_pred HHHHHHHHhhcccHHHHHHHhCcCc
Confidence 666664 468888888888888653
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.23 E-value=0.0036 Score=63.04 Aligned_cols=151 Identities=11% Similarity=0.180 Sum_probs=97.5
Q ss_pred ccCCCchhHHHHHHHHhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHH----HHhcchhcCCcccCcHHHHH
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQ----MVEMHEMVPGKRFDRYHELG 100 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~----l~~~~~~~~~~~~~~y~~l~ 100 (417)
..|+.+.+...+.+..+.+|++. ++.|....+.|+....... ......++.... +.+..++. +..|.+|+.
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~T~~e~l 113 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAM-IQVPTGYFVLGVLGKKFAIISRKY---NAITINDVL 113 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHH
Confidence 46778999999999999998854 7788877777863211110 000111111112 22222222 345999999
Q ss_pred HhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHH
Q 014861 101 QGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSL 180 (417)
Q Consensus 101 ~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~ 180 (417)
++-||+|..+.+..+...+.+++...+.+...+..++..+ +++....+++..+++.--.....++...++..
T Consensus 114 ~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GG~~av~~td~ 185 (471)
T TIGR02119 114 KARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------GLSYLTALFIFSSSVLIYTTFGGFRAVALTDA 185 (471)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999976666777777777777777777777777777664 23334444555555666677788888888888
Q ss_pred HHHHHHHH
Q 014861 181 AAAVMSLS 188 (417)
Q Consensus 181 ~~~~~~~~ 188 (417)
+..+..++
T Consensus 186 iQ~~v~~~ 193 (471)
T TIGR02119 186 IQGIVMFT 193 (471)
T ss_pred HHHHHHHH
Confidence 88765443
No 59
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.05 E-value=0.018 Score=58.12 Aligned_cols=152 Identities=11% Similarity=0.180 Sum_probs=93.7
Q ss_pred ccCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHH---HHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHH
Q 014861 26 SSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVL---IISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQ 101 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~---~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 101 (417)
..|+.+.+...+.+..+.+|+ ..++.|....+.|+....... ....+...+-...+.+..++. +..|.+|+.+
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~T~~e~l~ 115 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY---NAVTLNDMLR 115 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHH
Confidence 467788888888888888777 568888777777763211111 111111111222222222222 3469999999
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHH
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLA 181 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~ 181 (417)
+-||++..+.+..+...+..+......+...+..++.++ +++....+++..+++.--.....++...++..+
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------GISYETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999977655666666666666666667777777777664 233344445556666667777888888888887
Q ss_pred HHHHHHH
Q 014861 182 AAVMSLS 188 (417)
Q Consensus 182 ~~~~~~~ 188 (417)
..+..+.
T Consensus 188 Q~~i~~~ 194 (483)
T PRK09442 188 QGIVMLV 194 (483)
T ss_pred HHHHHHH
Confidence 7665443
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.05 E-value=0.0036 Score=61.71 Aligned_cols=149 Identities=14% Similarity=0.158 Sum_probs=98.2
Q ss_pred cCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 27 SRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
.|+.+.+...+.+..+.+|+ ..++.|....+.|+. +....+..............+..++ .+..|.+|..++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NGAYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cCCCchhHHHHHHhC
Confidence 46778888888888888877 558888887777853 3322222233333344444443332 225699999999999
Q ss_pred CcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHH
Q 014861 106 DKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVM 185 (417)
Q Consensus 106 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~ 185 (417)
++..|.+..+...+..+......+...+..++..+ +++.....++..+++..-....-++...++..+..+.
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~--------gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT--------GLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 86666666677777777788888888888777764 2333333444555555556677888888887777665
Q ss_pred HH
Q 014861 186 SL 187 (417)
Q Consensus 186 ~~ 187 (417)
.+
T Consensus 150 ~~ 151 (407)
T TIGR00813 150 MI 151 (407)
T ss_pred HH
Confidence 43
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.04 E-value=0.0042 Score=62.68 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=97.0
Q ss_pred ccCCCchhHHHHHHHHhhhh-hhhchHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHhcchhcCCcccCcHHHHHH
Q 014861 26 SSRNAKWWYSAFHNVTAMVG-AGVLSLPYAMSHLGWGPGIAVLI---ISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQ 101 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG-~GiL~lP~~~~~~G~~~gi~~~~---~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~ 101 (417)
..|+.+.+...+...-+.++ .-.++.|....+.|+........ ...+.-.+-...+.+.. .+.+..|.+|..+
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~---~~~~~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA---KARGATTIPDFLE 112 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCccHHHHHH
Confidence 45666777777777777777 67899999999889754333332 22222223333333333 2233569999999
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHH
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLA 181 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~ 181 (417)
+-||++..|.+..+...+....-+...+...++.++..+. .+...-..+...++..-....-++...++..+
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 9999556778899999999999999999999988755543 22233333344444555555567777776666
Q ss_pred HHHH
Q 014861 182 AAVM 185 (417)
Q Consensus 182 ~~~~ 185 (417)
....
T Consensus 185 qg~i 188 (493)
T COG0591 185 QGLI 188 (493)
T ss_pred HHHH
Confidence 5554
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.96 E-value=0.021 Score=55.82 Aligned_cols=308 Identities=13% Similarity=0.105 Sum_probs=164.3
Q ss_pred hHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCccccee
Q 014861 33 WYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWI 112 (417)
Q Consensus 33 ~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 112 (417)
+...+++.+-..|+.... .++..++...++..++...-.-....... +.+ .++.-+.|..||++ |..+
T Consensus 8 ~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~-~~G---l~~~v~sR~~FG~~-Gs~~ 75 (386)
T TIGR02358 8 FGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA-DTG---LSAMGSLKLSLGSK-GSVL 75 (386)
T ss_pred HHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccC---cCHHHHHHHHHccc-hhhH
Confidence 344455555555543211 44444555555444444333333333222 223 37999999999975 6688
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHH
Q 014861 113 VVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTI 192 (417)
Q Consensus 113 v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~ 192 (417)
..+...+...+=-.......++.++.+.+...+.. +...+..+..++..+.+.. ..+.+++.......+..+....
T Consensus 76 ~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~---~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i~~~~ 151 (386)
T TIGR02358 76 PSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE---SPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWLLLIATLW 151 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888998888887643221 1223344444445555543 5677777777776654443322
Q ss_pred HhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhh-ccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHHHHH
Q 014861 193 AWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFA-YAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAI 271 (417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~ 271 (417)
..+....+..... ..+.+. + ..+..++....-. -......+...|.. |+|++ ..+....+..+...
T Consensus 152 ~~~~~~~~~~~~~-~~~~~~-----~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G~~i~~~ 218 (386)
T TIGR02358 152 LLVVVFSKADLSE-LWNRAG-----D-MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLGYFIGSC 218 (386)
T ss_pred HHHHHHhccchhh-hcCCCC-----C-ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHHHHHHHH
Confidence 2222222211111 111111 1 2222222222211 12223477888876 44443 33677788888888
Q ss_pred HHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 014861 272 CYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRS 351 (417)
Q Consensus 272 ~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 351 (417)
+-.++|.....+.++....+++.... ....+-+...++...+-..+.++.-..+...+++-+ ++++...
T Consensus 219 ~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~-----~~~~~~i-- 287 (386)
T TIGR02358 219 WMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLK-----VKHLAIG-- 287 (386)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-----chHHHHH--
Confidence 88888888777776653334443332 112334455556666667777777777777774321 1122111
Q ss_pred HHHHHHHHHHHH--ccChhhhhhhhhhcchhH
Q 014861 352 LYVAFTMIVAIS--VPFFGSLMGFFGGFALAP 381 (417)
Q Consensus 352 ~~~~~~~~la~~--vp~~~~i~~~~Ga~~~~~ 381 (417)
..++..+++.. ...+..++++.|...++.
T Consensus 288 -~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~ 318 (386)
T TIGR02358 288 -VGVLGTLIALLFPVDKYENFLLLIGSVFAPL 318 (386)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222 355777777777766553
No 63
>PRK12488 acetate permease; Provisional
Probab=97.95 E-value=0.03 Score=57.47 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=95.1
Q ss_pred cCCCchhHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 27 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWGPGIAVLIISWVVTL-YTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~gi~~~~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
.|+.+.+...+.+..+.++++ .++.|....+.|+. +....+. ..+.+ .....+.+-.+ +.+..|.+|..++=|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr---~~g~~T~~d~l~~Rf 140 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLR---NLGKYTFADVVSYRL 140 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHH---HCCCcchHHHHHHHc
Confidence 567888999999999988885 48899887777863 3222211 11111 11223333222 222469999999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
|.|..|.+..+...+....-....+...+..++.++ +++...-+++..++...-+...-++...++..+..+
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 865556777777766666666677777776666654 233344445555566666677788888888888776
Q ss_pred HHHH
Q 014861 185 MSLS 188 (417)
Q Consensus 185 ~~~~ 188 (417)
..+.
T Consensus 213 im~~ 216 (549)
T PRK12488 213 LLLS 216 (549)
T ss_pred HHHH
Confidence 5443
No 64
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.90 E-value=0.013 Score=60.12 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=89.9
Q ss_pred cCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 27 SRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVLIISWVVTL-YTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
.|+.+.+...+.+..+.+++ ..++.|....+.|+- +....+. ..+.+ .....+.+-.++ .+..|.+|..++=|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr---~g~~T~~d~l~~Rf 140 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRN---LGRYTFADVASYRL 140 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHH---cCCccHHHHHHHHc
Confidence 56677777777777777765 678999887777863 3222221 11111 223344442222 23469999999988
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
|.|.-|.+..+...+....-....+...+..++.++ +++...-+++..+++..-....-++...++..+..+
T Consensus 141 ~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 141 KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------GLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 866555666666665555555666666666666553 233333345555555666667788888888877766
Q ss_pred HHH
Q 014861 185 MSL 187 (417)
Q Consensus 185 ~~~ 187 (417)
..+
T Consensus 213 im~ 215 (549)
T TIGR02711 213 LLL 215 (549)
T ss_pred HHH
Confidence 443
No 65
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.88 E-value=0.014 Score=57.14 Aligned_cols=257 Identities=14% Similarity=0.143 Sum_probs=149.9
Q ss_pred cHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCch
Q 014861 95 RYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNS 174 (417)
Q Consensus 95 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~ 174 (417)
+=-.+.|..||.+ |.++..+...+.+.|-.....+..++.... ..+.+...+.++..+++...+.. -.+.
T Consensus 82 pqmi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------~~~~~~~~~ili~g~l~~l~~if-G~r~ 151 (442)
T COG1457 82 PQMILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIGS--------GTGLPVWAGILIIGVLMTLVTIF-GYRA 151 (442)
T ss_pred Chheeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhcccccc--------CCCCcHHHHHHHHHHHHHHHHHH-hHHH
Confidence 3456788999984 668999999999999888888888876111 12344566666666666665554 3444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccc-ccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccC-ccchhhhhhcCCcCCCC
Q 014861 175 ISVVSLAAAVMSLSYSTIAWVVPLE-KGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAG-HNVVLEIQATIPSTPEK 252 (417)
Q Consensus 175 l~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~m~~~~~~ 252 (417)
++..+........+........... ++ ..+... ...+.++.++..+++..+-.+.. -+......|-+ |+
T Consensus 152 l~~l~~~a~~~~~~lf~~l~~~~~~~~~---~~~~~~--~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~ 222 (442)
T COG1457 152 LHKLERIAVPLLLLLFLYLLALLFRSKG---GLDALW--VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PS 222 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---ccceee--ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CC
Confidence 4444444444322211111111121 11 111111 11234556666666555444433 46667777877 33
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhHhhhhhhcccCCC-hHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Q 014861 253 PSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTV-EDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIET 331 (417)
Q Consensus 253 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~ 331 (417)
|+.++.-.....+......+-.+.|.....+-|++. ..++...++. .-..+.+...++...+--.++++.--.+.+
T Consensus 223 ~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 223 PTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 331233355556777777777888888888888776 4555555553 445677777888888888888888777777
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHHHHHHHH----HccChhhhhhhhhhcchh
Q 014861 332 FLVKQLKFTPSFMLRLVTRSLYVAFTMIVAI----SVPFFGSLMGFFGGFALA 380 (417)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~----~vp~~~~i~~~~Ga~~~~ 380 (417)
...+- ++..|.+...+. ..+++|+ +..+++..+.++|+....
T Consensus 300 i~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P 345 (442)
T COG1457 300 IIPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPP 345 (442)
T ss_pred hhhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77642 233333333332 2222333 456788888888887654
No 66
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.61 E-value=0.0007 Score=66.74 Aligned_cols=149 Identities=15% Similarity=0.184 Sum_probs=84.3
Q ss_pred cCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 27 SRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
.|+.+.+...+.+..+.+|+ .+++.|-...+.|+. +....+............+.+-.+ +.+..|.+|+.|+-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLR---RSGAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHH---HTT--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhc---ccchhhhhhhhhhhcC
Confidence 46788899999999988888 568889888888875 333333333333344444454333 2235699999999999
Q ss_pred Ccc-cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 106 DKL-GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 106 ~~~-g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
++. .+.+..+...+.........+...+..++..+ +++.....++..++...-....-++...++..+..+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------T--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhcc--------chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 875 34555555555666666677777777666654 234344455555555556666677777777666665
Q ss_pred HHH
Q 014861 185 MSL 187 (417)
Q Consensus 185 ~~~ 187 (417)
..+
T Consensus 153 i~~ 155 (406)
T PF00474_consen 153 IMI 155 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 67
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.61 E-value=0.076 Score=54.57 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=93.6
Q ss_pred ccCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 26 SSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
..|+.+++...+.+..+.+++ ..++.|....+.|+. +........+........+.+-.++. +..|..|..++=|
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~---~~~T~~e~l~~Rf 105 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF---GKYTVPDFIGDRY 105 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC---CCccHHHHHHHHh
Confidence 467889999999999998876 468888877777763 22221111111122334444433322 3469999999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
|+|..|.+..+...+....-....+...+..++.+. +++...-+++..++...-+...-++...++-.+..+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------EVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 876666776666666666666666666676666554 233333344555555555667788888888777765
Q ss_pred HHH
Q 014861 185 MSL 187 (417)
Q Consensus 185 ~~~ 187 (417)
..+
T Consensus 178 im~ 180 (552)
T TIGR03648 178 VLI 180 (552)
T ss_pred HHH
Confidence 433
No 68
>PRK09395 actP acetate permease; Provisional
Probab=97.58 E-value=0.12 Score=53.01 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=90.6
Q ss_pred ccCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 26 SSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
..|+.+.+...+.+..+.+++ ..++.|....+.|+. +....+...+........+.+-.+ +.+..|++|..++=|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r---~~g~~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAERLR---NLGKYTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHh---hCCCccHHHHHHHHc
Confidence 356778888888888888876 458899887777873 222222111111122233333222 223469999999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
|+|..|.+..+...+.........+...+..++.++ +++...-+++..++...-....-++...++..+..+
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 865455666666555555555555666666555553 244344455555666666677788888888777766
Q ss_pred HHH
Q 014861 185 MSL 187 (417)
Q Consensus 185 ~~~ 187 (417)
..+
T Consensus 215 im~ 217 (551)
T PRK09395 215 LLL 217 (551)
T ss_pred HHH
Confidence 433
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=97.57 E-value=0.097 Score=51.55 Aligned_cols=253 Identities=12% Similarity=0.076 Sum_probs=119.0
Q ss_pred CcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCc
Q 014861 94 DRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFN 173 (417)
Q Consensus 94 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~ 173 (417)
.++..+.|..||.+ |..+..+...+...+=........++.++...+ .+...+.++..++..+..... .+
T Consensus 71 ~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------~~~~~~~~i~~~l~~~~~~~G-~~ 140 (404)
T PRK11017 71 LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------LDINLLIVLSGLLMTVTAYFG-IS 140 (404)
T ss_pred cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHHH-HH
Confidence 48999999999985 657777666666655444444444554444321 222334555555555555543 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccC-CCCccccCCCCCchhhHhHHHHHHHhHhhhc-cCccchhhhhhcCCcCCC
Q 014861 174 SISVVSLAAAVMSLSYSTIAWVVPLEKGV-EPDVDYSYNAKSTTDAMFNFFTALGDVAFAY-AGHNVVLEIQATIPSTPE 251 (417)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~ 251 (417)
.+++.+..+........+...+....+.. ........++ ....+..++...+-.+ ..-.+.+...|.. |
T Consensus 141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~a~~~~~g~~~~~~~~~~DysRy~----k 211 (404)
T PRK11017 141 ALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPA-----EPLDFSAALTLVVGSFISGGTLTADFVRFG----R 211 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCC-----CcccHHHHHHHHHHHHHHhHhcCCChHhhc----c
Confidence 55555555444333222212222222110 1111000011 1123444444433333 3356788888887 4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Q 014861 252 KPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIET 331 (417)
Q Consensus 252 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~ 331 (417)
++++ .......++.+...+-.++|.......|+....+.... .+. ....-+...++..+.--...+..-..+.+
T Consensus 212 ~~~~--~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~~---~~~-~~~~l~~~~l~~~t~n~~~~ys~~l~~~~ 285 (404)
T PRK11017 212 SAKI--AVLATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMIA---QGL-LIPAIVMLGLNIWTTNDNALYASGLGFCN 285 (404)
T ss_pred Cccc--eeehhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH---hch-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4433 22455566666666666677666666665322222221 111 12233333444444444444444444445
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHHHHHHHH-HccChhhhhhhhhhcchh
Q 014861 332 FLVKQLKFTPSFMLRLVTRSLYVAFTMIVAI-SVPFFGSLMGFFGGFALA 380 (417)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~vp~~~~i~~~~Ga~~~~ 380 (417)
..+. +++ +. ..+..++..+++. ...++...+++.|...++
T Consensus 286 l~~~------~~~-~~--~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P 326 (404)
T PRK11017 286 ITRL------SSR-TL--TVVNGIIGTVLALWLYNNFVGWLTLLGSAIPP 326 (404)
T ss_pred HhcC------cch-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4311 111 11 1112222222222 346688888888876655
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.52 E-value=0.064 Score=54.22 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=84.2
Q ss_pred ccCCCchhHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcC--CcccCcHHHHHHh
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVP--GKRFDRYHELGQG 102 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~--~~~~~~y~~l~~~ 102 (417)
..|+.+++...+.+..+.+++. .++.|....+.|+.. ........+........+.+-.++.. +.+..|.+|+.|+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 3577888888888888887764 577887777778742 22222222222233334433222121 2335689999999
Q ss_pred hcCCccccee---hhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHH
Q 014861 103 AFGDKLGLWI---VVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVS 179 (417)
Q Consensus 103 ~~G~~~g~~~---v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s 179 (417)
=||++.. .+ ..+...+....-....+...+..++.++ +.+.....++..++...-....-++...++.
T Consensus 113 Ryg~~~~-~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 113 RFNDKSR-LLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------GLDYKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred HhCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9996432 32 2222222233333444445555555443 2333333445555555566677888888887
Q ss_pred HHHHHHHH
Q 014861 180 LAAAVMSL 187 (417)
Q Consensus 180 ~~~~~~~~ 187 (417)
.+..+..+
T Consensus 184 ~iQ~~i~~ 191 (487)
T TIGR02121 184 FVQGLLMF 191 (487)
T ss_pred HHHHHHHH
Confidence 77766443
No 71
>PRK10484 putative transporter; Provisional
Probab=97.46 E-value=0.14 Score=52.30 Aligned_cols=156 Identities=12% Similarity=0.010 Sum_probs=78.8
Q ss_pred ccCCCchhHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
..|+.+++...+.+..+.++++ .++.|....+.|+... .......+...+....+.+-.+ +.+..|.+|+.|+-|
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~p~~~---r~~~~T~~e~l~~Ry 111 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEVTAAIALIILALIFLPRYL---KSGITTIPDFLEERY 111 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHH---hcCCccHHHHHHHhc
Confidence 4678899999999888888775 4778887777786421 1111111111122233333222 223569999999999
Q ss_pred CCcccceehhHHHHHH-HHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHH----HHHHHHHHHhhCCCCchhHHHH
Q 014861 105 GDKLGLWIVVPQQVIV-EVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIM----IFAAIHFVLSHLPNFNSISVVS 179 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~-~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~----i~~~~~~pl~~~~~~~~l~~~s 179 (417)
|++.. .+......+. ....+...+...+..++.++... ...+.+...-.. +..++...-....-++...++.
T Consensus 112 g~~~~-~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD 188 (523)
T PRK10484 112 DKTTR-RIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--ELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSD 188 (523)
T ss_pred CchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 98754 3333332222 22222222223333333332110 001122221111 1233334445566788888887
Q ss_pred HHHHHHHHH
Q 014861 180 LAAAVMSLS 188 (417)
Q Consensus 180 ~~~~~~~~~ 188 (417)
.+..+..++
T Consensus 189 ~iQ~vim~i 197 (523)
T PRK10484 189 TINGIGLLI 197 (523)
T ss_pred HHHHHHHHH
Confidence 777664433
No 72
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.37 E-value=0.18 Score=49.84 Aligned_cols=234 Identities=13% Similarity=0.053 Sum_probs=115.2
Q ss_pred cCcHHHHHHhhcCCcccceeh---hHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCC----c-----ccccchhhHHH-H
Q 014861 93 FDRYHELGQGAFGDKLGLWIV---VPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPS----C-----KEIKTSYWIMI-F 159 (417)
Q Consensus 93 ~~~y~~l~~~~~G~~~g~~~v---~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~-----~~~~~~~~~~i-~ 159 (417)
..+|+.+.|..||- .|..+- .....+.-+|.-+ -..+..++-++..+.+. . .+.+...++.. .
T Consensus 102 gIpFpv~~RaSFGi-~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 102 GIPFPVLSRASFGI-YGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred CCCchHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 45899999999986 442222 2222222233222 23333444444444331 1 01122222211 1
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHhhhcccccCC--CCccccCCCCCchhhHhHHHHHHHhHhhhc-cCc
Q 014861 160 AAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVE--PDVDYSYNAKSTTDAMFNFFTALGDVAFAY-AGH 236 (417)
Q Consensus 160 ~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~ 236 (417)
.=++-.++..+.++.+|+.-...-.++.+.+.-+++....+... .-.+........+.....+...+...+--| ...
T Consensus 178 fW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~ 257 (497)
T COG1953 178 FWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLA 257 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 11233344566788888887666665444333333333322211 111111011112222333333333333223 235
Q ss_pred cchhhhhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHHhHhh----hhhhcccCC--ChHHHhhCCCCchHHHHHHHHHH
Q 014861 237 NVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVAL----VGYYIFGNT--VEDNILLTLEKPIWIVAAANLFV 310 (417)
Q Consensus 237 ~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~----~gy~~fG~~--~~~~il~~~~~~~~~~~~~~~~~ 310 (417)
-|+|...|.- |+++... +.-.+++.+.+.+..++|+ .++..||+. .+.+++.++++......++.+.+
T Consensus 258 lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~ 331 (497)
T COG1953 258 LNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTF 331 (497)
T ss_pred cCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHH
Confidence 7888888887 5554433 3344566666666666555 468899998 45589999986544432333333
Q ss_pred H-HHHHhhcccccccHHHHHHHHHhhh
Q 014861 311 V-VHVIGSYQIFAMPVFDMIETFLVKQ 336 (417)
Q Consensus 311 ~-i~~~~s~pl~~~~~~~~l~~~~~~~ 336 (417)
+ -.+.+...-+..+.-..+..++++.
T Consensus 332 ~iati~~Ni~aN~vsp~~D~s~l~Pk~ 358 (497)
T COG1953 332 AVATISTNIAANIVSPGYDLSALFPKY 358 (497)
T ss_pred HHHHHhhhHHhccCChHHHHHHhcccc
Confidence 3 3444455556667667777777664
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.33 E-value=0.19 Score=51.04 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=85.1
Q ss_pred ccCCCchhHHHHHHHHhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHh-cch-hcCCcccCcHHHHHHh
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVE-MHE-MVPGKRFDRYHELGQG 102 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~-~~~-~~~~~~~~~y~~l~~~ 102 (417)
..|+.+.+...+.+..+.+++.. ++.|....+.|+.. ....+...+........+.+ ... .+.+.+..|.+|..|+
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 46788999999999988888855 77898888888642 11111111111112222221 110 0112235699999999
Q ss_pred hcCCcccce---ehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHH
Q 014861 103 AFGDKLGLW---IVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVS 179 (417)
Q Consensus 103 ~~G~~~g~~---~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s 179 (417)
=||++ .|. +..+...+....-+...+...+..++.++ +++.....++..++...-....-++...++.
T Consensus 117 Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 117 RFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTF--------GMSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred HhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99864 223 22333333333333444444555555443 2333444555566666667777888888888
Q ss_pred HHHHHHHH
Q 014861 180 LAAAVMSL 187 (417)
Q Consensus 180 ~~~~~~~~ 187 (417)
.+..+..+
T Consensus 188 ~iQ~~imi 195 (502)
T PRK15419 188 TVQASLMI 195 (502)
T ss_pred HHHHHHHH
Confidence 88776443
No 74
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.20 E-value=0.0096 Score=56.31 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=117.9
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcch-hcCCcccCcHHHHHHhhcCCcc
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHE-MVPGKRFDRYHELGQGAFGDKL 108 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~-~~~~~~~~~y~~l~~~~~G~~~ 108 (417)
.+.+...-+=..++-|+|.+.=|-.-.+.||.++.+.+++-.++.---.....-... |++|+ |.+|++++..||+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~---Si~~i~~~~lG~~- 127 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGK---SIGEIAGKYLGKR- 127 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCc---cHHHHHHHHHHHH-
Confidence 455667777888999999999999999999999999988766555544444433222 34443 9999999999986
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH
Q 014861 109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLS 188 (417)
Q Consensus 109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~ 188 (417)
+|.+..+..++.+.....++....++.+...-. .....+..+...+.+-...-|+-.++...+.+++...+.
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~--------~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~ 199 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTFVNSPW--------AATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLLL 199 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--------HHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHHH
Confidence 558888888888888888888777766544211 112334445555555555545555566677777663322
Q ss_pred HHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcC
Q 014861 189 YSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATI 246 (417)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 246 (417)
.+ .. |..-+... .. .. .--.+++.|..-..+.|+-.=+
T Consensus 200 ~v----~~----G~~~p~~~-----~~---~~----~W~~ii~~Y~~iAs~lPVw~Ll 237 (376)
T PF02554_consen 200 AV----WL----GMYFPISL-----LS---VT----TWIIIIFIYYFIASVLPVWKLL 237 (376)
T ss_pred HH----Hh----hhhccccc-----Cc---HH----HHHHHHHHHHHHHHHhhHHHHh
Confidence 11 11 11111100 00 11 1224677787788888988876
No 75
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.11 E-value=0.22 Score=48.30 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHhhhhhhhchHHHH-HHhhC--hhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcccceehh
Q 014861 38 HNVTAMVGAGVLSLPYA-MSHLG--WGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVV 114 (417)
Q Consensus 38 ~l~~~~iG~GiL~lP~~-~~~~G--~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~ 114 (417)
.+....+|+|.+-.|-. -+++| |..+++.++++++..-..... +-.+.+. +|.++.++ +||++| .+..
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~gG---~~~~l~~~-~g~~f~-~lf~ 73 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVGG---GYDSLSAR-IGKVFG-ILFT 73 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecCC---CHHHHHHH-hChHHH-HHHH
Confidence 45667899999999966 33444 455666666666666554443 2223332 78888885 467788 3333
Q ss_pred HHH
Q 014861 115 PQQ 117 (417)
Q Consensus 115 ~~~ 117 (417)
..+
T Consensus 74 ~~~ 76 (378)
T TIGR00796 74 VIL 76 (378)
T ss_pred HHH
Confidence 333
No 76
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.99 E-value=0.01 Score=59.90 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=130.3
Q ss_pred CCchhHHHHH-----HHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcch--hcCCcccCcHHHHHH
Q 014861 29 NAKWWYSAFH-----NVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHE--MVPGKRFDRYHELGQ 101 (417)
Q Consensus 29 ~~s~~~~~~~-----l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~--~~~~~~~~~y~~l~~ 101 (417)
|.+.+.+++. +..-.+ .|-+++...|+|++..+..+++.-.+..+|..-+...+. ...|.+ -|..+.|
T Consensus 66 kLgTf~GvfvPtaLsmfSiLl---FLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGG--aYymISR 140 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILL---FLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGG--AYYMISR 140 (945)
T ss_pred cccceeeEechhHHHHHHHHH---HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCc--eEEEEEc
Confidence 6666555443 333222 356678888999888888877776666666555544221 122322 4555554
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHh-hhcC-C-ccc-ccchhhHHHH----HHHHHHHhhCCCCc
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHE-VICP-S-CKE-IKTSYWIMIF----AAIHFVLSHLPNFN 173 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~-~~~~-~-~~~-~~~~~~~~i~----~~~~~pl~~~~~~~ 173 (417)
.+||.+| --+....++.+...|..++....+-+-+.+. ...+ + ... -+..+|-.+. ....+.+|++. -.
T Consensus 141 -sLGpEfG-GSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lG-sa 217 (945)
T KOG1288|consen 141 -SLGPEFG-GSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLG-SA 217 (945)
T ss_pred -ccCcccC-CeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhh-HH
Confidence 6688888 6778888888877777777776665544443 1111 0 001 1233443333 33334444443 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccCCCCcc-----c---------cCCCCCc----------------hhhHhHHH
Q 014861 174 SISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVD-----Y---------SYNAKST----------------TDAMFNFF 223 (417)
Q Consensus 174 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~----------------~~~~~~~~ 223 (417)
-++..|.+-+.....-...+.+..+..++.++.. + ++....| .....++-
T Consensus 218 lfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~ 297 (945)
T KOG1288|consen 218 LFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFA 297 (945)
T ss_pred HHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehh
Confidence 2233333332211111111122223333322110 0 0000111 11223455
Q ss_pred HHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHHhHhhhhh
Q 014861 224 TALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGY 281 (417)
Q Consensus 224 ~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy 281 (417)
..|+++.-+-.|...=-+...|+ |+|+| .+++....+...+++.|.++.+.--
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgEL----k~PSk-SIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGEL----KAPSK-SIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred hhheeeeccchhhhcCCCcCccc----cCccc-cCCccchHHHHHHHHHHHHHHHHhc
Confidence 67777777777776666778888 88988 5889999999999999999876643
No 77
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.96 E-value=0.22 Score=48.17 Aligned_cols=227 Identities=13% Similarity=0.125 Sum_probs=112.3
Q ss_pred cHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhh--CCCC
Q 014861 95 RYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSH--LPNF 172 (417)
Q Consensus 95 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~~ 172 (417)
+..|..++-+||+++ +...+...+.......+-....+..++.+. +.+...+.++..+..+-+.+ .++.
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------g~~~~~~~~~~~~~~~~ll~~~~~~y 113 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF--------GIPLWIWVLLVAVIAILLLWLSSGGY 113 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 788898999998777 677777777777777777766666555443 24446666666665555555 6677
Q ss_pred chhHHHHHHHHHHH-HHHHHHHhhhcccccCCCCccccC--CCCCchhhHhHHHHHHHhHhhhccCccchh--hhhhcCC
Q 014861 173 NSISVVSLAAAVMS-LSYSTIAWVVPLEKGVEPDVDYSY--NAKSTTDAMFNFFTALGDVAFAYAGHNVVL--EIQATIP 247 (417)
Q Consensus 173 ~~l~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~--~i~~~m~ 247 (417)
+.+......-.... +.++..++.. +.+..+...+. |+.+. ...+...++.+-..-.-|.... ...+|-+
T Consensus 114 ~~~E~~~~~lv~~m~l~f~~~~~~~---~p~~~~~~~g~~~P~~p~---~~~~~~~valiGttv~p~~lf~~s~~~~~k~ 187 (358)
T PF01566_consen 114 RRLERILKVLVAVMVLAFLIAAFIV---HPDWGEVARGLVVPSIPG---PGSLLFAVALIGTTVMPHNLFLHSSLVQEKG 187 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc---chhHHHHhhhccCCCCcc---hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcc
Confidence 77776655444432 2233222211 11111111111 12221 2333333443333333332222 1112211
Q ss_pred cCC-CC-CC--CCCcchHHHHHHHHHHHHHHhHhhhhhhccc-CCC--h--H---HHhhCCCCchHHHHHHHHHHHHHHH
Q 014861 248 STP-EK-PS--KGPMWKGVVVAYIIVAICYFPVALVGYYIFG-NTV--E--D---NILLTLEKPIWIVAAANLFVVVHVI 315 (417)
Q Consensus 248 ~~~-~~-~~--~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG-~~~--~--~---~il~~~~~~~~~~~~~~~~~~i~~~ 315 (417)
.+. ++ ++ .+..++-...++....++-..+=+.+...+. +.. + + +.+...-.+++...+..+....+..
T Consensus 188 ~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~f 267 (358)
T PF01566_consen 188 WTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGF 267 (358)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHH
Confidence 000 00 01 1123344556666555555555444544443 111 1 1 2232221114666666666666667
Q ss_pred hhcccccccHHHHHHHHHhhh
Q 014861 316 GSYQIFAMPVFDMIETFLVKQ 336 (417)
Q Consensus 316 ~s~pl~~~~~~~~l~~~~~~~ 336 (417)
.+.+.........+.+.++.+
T Consensus 268 ss~i~~~~~~~~~~~~~~~~~ 288 (358)
T PF01566_consen 268 SSSITATLAGAYVLADFLGWR 288 (358)
T ss_pred hhHHHhccccceehHhhhcCC
Confidence 777777777777778887654
No 78
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.95 E-value=0.14 Score=50.22 Aligned_cols=147 Identities=12% Similarity=0.110 Sum_probs=76.3
Q ss_pred cCCCchhHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCC-cccCcH-----HHH
Q 014861 27 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPG-KRFDRY-----HEL 99 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y-----~~l 99 (417)
+++.|.+++.+..+.+.+|+| ++..|-+.+..| ..+++.+-+++++..-+.+.-.....++.+ +++.+| ..+
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 345899999999999999998 999999966655 556555544444444333332222212211 111236 777
Q ss_pred HHhhcCCcccceehhHHHHHHHHHH-HHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHH
Q 014861 100 GQGAFGDKLGLWIVVPQQVIVEVST-NIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVV 178 (417)
Q Consensus 100 ~~~~~G~~~g~~~v~~~~~~~~~g~-~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~ 178 (417)
-+...||+.| .+..++ ++..++. ..... +.+.+..+... +.+ .+...+..+++.-......++.+..+
T Consensus 123 ~~gl~~k~lg-~lfa~~-~i~~f~~~~~~Q~----nsi~~~~~~~~----~~~-~~v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 123 KKGLGMRWLA-VLFAVF-LIASFGIGNMVQA----NAIASALSNAF----NVP-KLVTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred HHHhCccHHH-HHHHHH-HHHHHhhhHHHHH----HHHHHHHHHHc----CCc-HHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 7777766544 333333 2222221 22222 22222332111 122 22233333334444455567777766
Q ss_pred HHHHHHH
Q 014861 179 SLAAAVM 185 (417)
Q Consensus 179 s~~~~~~ 185 (417)
+...+..
T Consensus 192 ~~~lvP~ 198 (425)
T TIGR00835 192 SSVVVPF 198 (425)
T ss_pred HHHHHHH
Confidence 6655554
No 79
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0054 Score=60.96 Aligned_cols=222 Identities=16% Similarity=0.214 Sum_probs=133.1
Q ss_pred HHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchh---cCCcccCcHHHHHHhhcCCcccce
Q 014861 35 SAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEM---VPGKRFDRYHELGQGAFGDKLGLW 111 (417)
Q Consensus 35 ~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y~~l~~~~~G~~~g~~ 111 (417)
...|+.+.|+ .|-+++...|+|+..+++++..+..++..|..--....++ +.|. .|.-+ .+.+|+.+| .
T Consensus 40 cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yfli-s~slg~efg-g 111 (643)
T KOG2083|consen 40 CMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLI-SRSLGPEFG-G 111 (643)
T ss_pred hhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEE-Eeccccccc-c
Confidence 3345555444 5788999999999999999988877777665544432221 2221 44444 447788888 7
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHH
Q 014861 112 IVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYST 191 (417)
Q Consensus 112 ~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~ 191 (417)
-+.+...+.+.-.+..|.+..++.+.++++.... .-.+. ...+..++++-+ +....+|.+.+.++..++.++
T Consensus 112 sigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~--~~i~g--i~~vt~~ill~i----~~ag~~w~~k~q~~ll~il~i 183 (643)
T KOG2083|consen 112 SIGIIYAFANAVATAMYVVGFAESVAHLFETESK--EMIDG--IGSVTVLILLAI----NVAGVEWEAKLQIVLLLILLI 183 (643)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH--HHhcc--hhHHHHHHHHHh----hhccchhHHHHHHHHHHHHHH
Confidence 7888888888888999999999999999876521 11122 112222222222 344455555555553332221
Q ss_pred HH---hhhcc-ccc-CCCCc-cc---cCCC--CCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcch
Q 014861 192 IA---WVVPL-EKG-VEPDV-DY---SYNA--KSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWK 260 (417)
Q Consensus 192 ~~---~~~~~-~~~-~~~~~-~~---~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~ 260 (417)
.+ ++..+ ... ...+. .+ ...+ .+....-..++..|+++.=+..|.-.=..+.+++ |+|++ ..++
T Consensus 184 ai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL----~~Pq~-~IP~ 258 (643)
T KOG2083|consen 184 AIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDL----KDPQK-AIPL 258 (643)
T ss_pred HHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCC----CCchh-hccc
Confidence 11 11111 111 00000 00 0000 1111122467777888888888877777888999 78876 4679
Q ss_pred HHHHHHHHHHHHHHhHh
Q 014861 261 GVVVAYIIVAICYFPVA 277 (417)
Q Consensus 261 ~~~~a~~~~~~~y~~~g 277 (417)
....+......+|+.+.
T Consensus 259 GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 259 GALLAIGVSTLLYLIFI 275 (643)
T ss_pred chhhhhhhhhhhhhhhh
Confidence 99999999999996653
No 80
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.91 E-value=0.012 Score=58.60 Aligned_cols=241 Identities=15% Similarity=0.117 Sum_probs=108.7
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHL--GWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~--G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
+|+.+.++-...-.+..+....+.+-...... ++..+++.+++..++...-......... +.|. +...+.|..|
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~Gl---~~~v~sR~~F 81 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTGL---PTMVLSRASF 81 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC------HHHHTTTTS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccCC---Cchhcchhcc
Confidence 34444555444444444444444333333222 3334555554444444333333333222 3343 7899999999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcc-------cccchhhHHH--HHHHHHHHhhCCCCchh
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCK-------EIKTSYWIMI--FAAIHFVLSHLPNFNSI 175 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~-------~~~~~~~~~i--~~~~~~pl~~~~~~~~l 175 (417)
|. .|..+..+...+...|=........++.++.+.+...+... ......+..+ ..++..+. .....+.+
T Consensus 82 G~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~g~~~l 159 (440)
T PF02133_consen 82 GY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF-AIYGMKAL 159 (440)
T ss_dssp -T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH-HCTHHHHH
T ss_pred Cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH-HhcCHHHH
Confidence 97 57788888888888888888888889999988876532100 0111111111 12222222 23345555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhcc-CccchhhhhhcCCcCCCCCC
Q 014861 176 SVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYA-GHNVVLEIQATIPSTPEKPS 254 (417)
Q Consensus 176 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~~~~~~~ 254 (417)
+.......................+... +...+. ...+.....+..++...+-.+. ...+.+...|.+ |+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~----~~~~ 232 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGMLIWALSKAGG-GPLLSA--PASPSPSGSFLAAIALVIGSWISWAPNASDYSRYA----KSDT 232 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCT--HHHCCS----S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC------HH
T ss_pred HhHHhhhhHHHHhhhhheeEEEeecCCc-chhhhC--cccchhHHHHHHHHHHHHhhhhhhhhccccHHhhC----CCCC
Confidence 5555554443222211111222221111 111110 1111111133344433333332 235567888988 4433
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhhhhhh
Q 014861 255 KGPMWKGVVVAYIIVAICYFPVALVGYY 282 (417)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 282 (417)
+ ..+...+++........+++..+..
T Consensus 233 ~--~~~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 233 S--AWWGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--cEEEEeehhhhHHHHHHHHHHHHHH
Confidence 3 3366777777777777777766544
No 81
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.55 E-value=0.88 Score=44.50 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=120.5
Q ss_pred CCCchhHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcc--hhcCCcccCcHHHHHHhhc
Q 014861 28 RNAKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMH--EMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 28 ~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~--~~~~~~~~~~y~~l~~~~~ 104 (417)
.-.|-..-++...++.+|-| +--.||...+.|...-++..++ ..+..=--.++.|-. ++.+++...+|..+.+
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~--- 82 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP--- 82 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---
Confidence 34566777888899999987 5789999887775433333222 332222223344421 1222222346766665
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCc---cc--------c-cchhhHHHH---HHHHHHHhhC
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSC---KE--------I-KTSYWIMIF---AAIHFVLSHL 169 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---~~--------~-~~~~~~~i~---~~~~~pl~~~ 169 (417)
+|+ . ..+.....+..+..+.-|.++.+=.+........+.. .+ . ++....... ..++.-+...
T Consensus 83 ~~~-~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~ 160 (439)
T COG0733 83 KKK-W-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVS 160 (439)
T ss_pred Ccc-c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 443 3 3456666677777778888877776666655544311 00 0 111111111 1122222233
Q ss_pred CCCc-hhHHHHHHHHHHHHHHHHHHhhhccc-ccCCCCccc-cCCCCCchhhHhHHHHHHHhHhhhccCc-cchhhhhhc
Q 014861 170 PNFN-SISVVSLAAAVMSLSYSTIAWVVPLE-KGVEPDVDY-SYNAKSTTDAMFNFFTALGDVAFAYAGH-NVVLEIQAT 245 (417)
Q Consensus 170 ~~~~-~l~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~ 245 (417)
|-.+ ...+.+..-+-..++..++++++... .+..++.+. -.|++....+.+-+..++|-..|+-.-- ....+..+.
T Consensus 161 ~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSY 240 (439)
T COG0733 161 RGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSY 240 (439)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4443 36677777666555444444444443 222222221 1122222334566777888888887543 444455555
Q ss_pred CCcCCCCCCCCCcchHHHHHHHHHHHHHHhHhhh
Q 014861 246 IPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALV 279 (417)
Q Consensus 246 m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 279 (417)
+ +|++ ++.+........-..+-++.|+.
T Consensus 241 L----~k~~--~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 241 L----SKKS--DLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred c----Cccc--chhhhHHHHHHHHHHHHHHHHHH
Confidence 5 2333 34454444444444444444443
No 82
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.26 E-value=0.82 Score=44.97 Aligned_cols=283 Identities=15% Similarity=0.169 Sum_probs=134.7
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHH---hhChhHHHHHHHHHHHHHHH-HHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMS---HLGWGPGIAVLIISWVVTLY-TLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~---~~G~~~gi~~~~~~~~~~~~-s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
......-+.+.....|+|=|-.|-... ..-|.++.+.++++++.--. +...+.+ . +. +++++++++ |
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~----~-~~---~~~~l~~~v-~ 73 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAK----S-GG---GIEDLASRV-G 73 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh----c-CC---CHHHHhccc-C
Confidence 345666778888999999999996543 33456777777776655443 2222222 2 22 688888865 4
Q ss_pred CcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHh----hhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHH
Q 014861 106 DKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHE----VICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLA 181 (417)
Q Consensus 106 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~ 181 (417)
|++|+. ....++ .+++-...+-+.....++ .+.++..++....+.+++..+.+-+++.| -|-+.++..+
T Consensus 74 ~~f~~i-f~~~i~-----l~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p-~kivd~iGk~ 146 (427)
T PF05525_consen 74 PKFALI-FTILIY-----LSIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNP-SKIVDRIGKF 146 (427)
T ss_pred cHHHHH-HHHHHH-----HHHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhch-hhHHHHHHHH
Confidence 555522 221111 112222222222222221 11111123344444555555555555533 3444444444
Q ss_pred HHHHHHHHHHHHhhhcccccCCC--CccccCCCCC---chhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCC
Q 014861 182 AAVMSLSYSTIAWVVPLEKGVEP--DVDYSYNAKS---TTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG 256 (417)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~ 256 (417)
-.-..++.+.++++..+.+...+ ..+..+.+.+ ...+-.+-+.+++-.+|+-. +..-.++... +|+++.
T Consensus 147 LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i----Ii~~i~~~g~--~~~k~~ 220 (427)
T PF05525_consen 147 LTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGII----IINAIRQKGY--KDKKEI 220 (427)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHhCC--CCHHHH
Confidence 44433333344444444332211 1111111111 11122233455555555533 3333333311 222221
Q ss_pred C--cchHHHHHHHHHHHHHHhHhhhhhhccc---CCCh-HHHhhCCCC---chHHHHHHHHHHHHHHHhhcccccccHHH
Q 014861 257 P--MWKGVVVAYIIVAICYFPVALVGYYIFG---NTVE-DNILLTLEK---PIWIVAAANLFVVVHVIGSYQIFAMPVFD 327 (417)
Q Consensus 257 ~--~~~~~~~a~~~~~~~y~~~g~~gy~~fG---~~~~-~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~~~ 327 (417)
+ ..++-.++.....++|...+..|.-.-+ ++.+ +.++.+..+ ++....+..+.+.++.+++---+...+.+
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~ 300 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAE 300 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2244446666777788888777765443 3333 344444321 23445555666666666666666777777
Q ss_pred HHHHHHh
Q 014861 328 MIETFLV 334 (417)
Q Consensus 328 ~l~~~~~ 334 (417)
.+++.++
T Consensus 301 yf~~~~~ 307 (427)
T PF05525_consen 301 YFSELFP 307 (427)
T ss_pred HHHHHhc
Confidence 7777775
No 83
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.96 E-value=1.8 Score=42.44 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=74.3
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcc
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKL 108 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~ 108 (417)
.+.....+.+..+-+|.|-++---. =++.|+- .+..++...+..+-.+.+..-....+|. +..|..++-|+|++
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~--ll~vills~l~~~~~Q~~~arLgivTG~---~laq~ir~~y~~~~ 91 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYS--LLWVILLSNLMAYILQELSARLGIVTGK---GLAEAIRERYLPGL 91 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHccchH
Confidence 4455555556666666654443322 2344442 2222222233333333222211112343 78999999999988
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHH
Q 014861 109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVS 179 (417)
Q Consensus 109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s 179 (417)
+ ++..+...+....++++.....+-.++-++. .+..+-.++.++..+-+...|..+.+..+.
T Consensus 92 ~-~~~~~~~~i~~~at~iae~~G~aial~ll~~--------ip~~~g~iItav~~~iil~~~~~r~~E~~v 153 (416)
T COG1914 92 G-ILLWILAEIAGIATDIAEVAGIAIALNLLFG--------IPLIIGAVITAVDVLIILLLKGYRLLERVV 153 (416)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 8 8888888888888888888888876666642 222333444455555545555344444443
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=95.95 E-value=0.098 Score=53.15 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=71.4
Q ss_pred hHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcc-hhcCCcccCcHHHHHHhhcCCcccce
Q 014861 33 WYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMH-EMVPGKRFDRYHELGQGAFGDKLGLW 111 (417)
Q Consensus 33 ~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~l~~~~~G~~~g~~ 111 (417)
+.-.-+=..++-|+|.+.=|..-.+.||.++.+.+++-.++.---..+..-.. .+++|+ |..|++++..|++.| .
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~Gr---Sig~ia~~~iG~~~~-~ 161 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGR---SLGELVKEEMGPTAG-V 161 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCc---cHHHHHHHHhhHHHH-H
Confidence 34445667789999999999999999999999998886655544444433322 234443 999999999998644 7
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhhHH
Q 014861 112 IVVPQQVIVEVSTNIIYMVTGGKSFK 137 (417)
Q Consensus 112 ~v~~~~~~~~~g~~~~y~i~~~~~l~ 137 (417)
+..+..++.+......+..++.+.+.
T Consensus 162 lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666666666666666665553
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.88 E-value=0.09 Score=52.21 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=74.9
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcc-hhcCCcccCcHHHHHHhhcCCcc
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMH-EMVPGKRFDRYHELGQGAFGDKL 108 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~-~~~~~~~~~~y~~l~~~~~G~~~ 108 (417)
.+.+...-+=..++-|+|.+-=|---+|.||.++.+.+++-.++.---...+.-.. .+++|. |.+|++++.+|++.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~---Si~~ia~~~lG~~a 128 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGK---SIGEIAGKYLGRTA 128 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCc---cHHHHHHHHhhhhH
Confidence 34555666777789999999999999999999999998887666655444444432 234443 99999999999976
Q ss_pred cceehhHHHHHHHHHHHHHHHHHhhhhHHH
Q 014861 109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKK 138 (417)
Q Consensus 109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 138 (417)
| .+..+...+..............+.+.+
T Consensus 129 ~-~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 129 K-VFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 7777666666655555555555554433
No 86
>PRK00701 manganese transport protein MntH; Reviewed
Probab=95.74 E-value=2.4 Score=42.14 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=44.4
Q ss_pred cHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHH--hhCCCC
Q 014861 95 RYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVL--SHLPNF 172 (417)
Q Consensus 95 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl--~~~~~~ 172 (417)
+..|+.++-+|++++ ++..+...+.+.+...+.....+.-++.++ +.+..+...+..+..+-+ ...++.
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~al~ll~--------gip~~~~v~i~~~~~~~~l~l~~~~y 165 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIALKLLF--------GIPLLQGALITALDTFLILMLQRRGF 165 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 799999999998665 666666666666666666666655554432 233233334333322222 234456
Q ss_pred chhHHHHH
Q 014861 173 NSISVVSL 180 (417)
Q Consensus 173 ~~l~~~s~ 180 (417)
+.+..+..
T Consensus 166 ~~~E~i~~ 173 (439)
T PRK00701 166 RPLEAIIG 173 (439)
T ss_pred cHHHHHHH
Confidence 66666643
No 87
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=94.94 E-value=4.2 Score=40.11 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=102.6
Q ss_pred cCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCC
Q 014861 93 FDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNF 172 (417)
Q Consensus 93 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~ 172 (417)
..|++|....=++.+..|++..+...+..+.-.++.++..+..+..+++ .+...-+++..+++..-.....+
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------v~~~vgv~ig~ilm~~Yvv~GGM 174 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------VPYHVGVVIGGILMMVYVVLGGM 174 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------CCceeehhhHhHHHHHHHHhcch
Confidence 4699999888887777888888877777777888888888887777763 22233445556666666777888
Q ss_pred chhHHHHHHHHHHHHH-HHHHHhhhcccccCCCC--------ccccC---CCCCchhhHhHHHHHHHhHhhhccCccchh
Q 014861 173 NSISVVSLAAAVMSLS-YSTIAWVVPLEKGVEPD--------VDYSY---NAKSTTDAMFNFFTALGDVAFAYAGHNVVL 240 (417)
Q Consensus 173 ~~l~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~ 240 (417)
+...|++.+.-+..+. +++..+....+.+.++. .++.. ....+....++..+.++.+.--..|....|
T Consensus 175 ~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLP 254 (529)
T COG4147 175 KATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLP 254 (529)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCC
Confidence 8888888877664332 11111111111111100 00000 000011111333344444444444444555
Q ss_pred hhhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHHhHhhhhhh
Q 014861 241 EIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGYY 282 (417)
Q Consensus 241 ~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 282 (417)
.+.-..- --|+-+.-|+.+.++......+|+..-..|+.
T Consensus 255 Hil~RFf---Tvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 255 HILMRFF---TVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred eEEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433221 12333344589999999999999998777654
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.42 E-value=0.45 Score=46.73 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=77.0
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHh
Q 014861 53 YAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTG 132 (417)
Q Consensus 53 ~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~ 132 (417)
....++|++.++.+.++-..+.+.+...-....+ ..++..=..+++++.+|+ .|+.+..+...+.|+-++++-....
T Consensus 222 ~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~--~~~g~~lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~ 298 (427)
T PF05525_consen 222 KYTIKAGLIAGILLALIYGGLAYLGATSSGSFPD--DINGAELLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISAC 298 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccccC--CCCHHHHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544433333332222111111 112223577889999997 7889999999999999999999999
Q ss_pred hhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHH
Q 014861 133 GKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSL 180 (417)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~ 180 (417)
+|+.++..+. .+.+.|.++.+++.+.++.. .++++-..|.
T Consensus 299 a~yf~~~~~k-------isY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~ 338 (427)
T PF05525_consen 299 AEYFSELFPK-------ISYKVWVIIFTIFSFIIANL-GLDQIIKISV 338 (427)
T ss_pred HHHHHHHhcc-------cChHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 9999998752 55688888888888888776 3555444433
No 89
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.17 E-value=0.46 Score=46.12 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=59.2
Q ss_pred cCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCC
Q 014861 93 FDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNF 172 (417)
Q Consensus 93 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~ 172 (417)
..-..+++++.+|+ .|+.+..+...+.|+.++++.....+|+.+++.+. .+.+.|.++..++.+-++.. .+
T Consensus 254 ~~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------~~y~~~v~~~~l~s~~ia~~-Gl 324 (378)
T TIGR00796 254 AQILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------LSYKTWVIVFTLFSFIVANL-GL 324 (378)
T ss_pred HHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHh-CH
Confidence 34678999999997 78899999999999999999999999998887532 45566666666666666554 44
Q ss_pred chhHHHH
Q 014861 173 NSISVVS 179 (417)
Q Consensus 173 ~~l~~~s 179 (417)
+.+-..+
T Consensus 325 ~~Ii~~~ 331 (378)
T TIGR00796 325 TQIISIS 331 (378)
T ss_pred HHHHHHH
Confidence 4444433
No 90
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=93.93 E-value=8.4 Score=39.36 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=24.9
Q ss_pred CchhHHHHHHHHhhhhhh-hchHHHHHHhhCh
Q 014861 30 AKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGW 60 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~ 60 (417)
.+..+-++..++..+|-| +.-.||-..+-|.
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG 36 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGG 36 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 456778889999999998 8999999776664
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.06 E-value=6 Score=39.08 Aligned_cols=280 Identities=11% Similarity=0.064 Sum_probs=127.5
Q ss_pred chhHHHHHHHHhhhhhhhchHHHHHH-hhC--hhHHHHHHHHHHHHHH-HHHHHHHhcchhcCCcccCcHHHHHHhhcCC
Q 014861 31 KWWYSAFHNVTAMVGAGVLSLPYAMS-HLG--WGPGIAVLIISWVVTL-YTLWQMVEMHEMVPGKRFDRYHELGQGAFGD 106 (417)
Q Consensus 31 s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G--~~~gi~~~~~~~~~~~-~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~ 106 (417)
.....-+.+..-..|+|=|-.|-... ++| |..+.+.++++++.-- .+...+.+ .+. +++++++++ ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~-----~~g---~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAK-----VGG---GVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh-----cCC---CHHHHhhhc-ch
Confidence 56777888999999999999996643 333 4556666666544332 23333333 221 788888866 45
Q ss_pred cccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHh----hhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 014861 107 KLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHE----VICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAA 182 (417)
Q Consensus 107 ~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~ 182 (417)
++|.. ....+ .. +++=...+=+.....++ .+.++ .+.....+.+++..+.+-+++. .-|-+.++..+-
T Consensus 80 ~f~~~-f~~~i-~l----~IGP~~aiPRtaavsfEm~i~p~~~~-~~~~~~ifs~iFF~i~~~l~l~-p~klvd~iGK~L 151 (439)
T PRK15433 80 VAGVL-LATVC-YL----AVGPLFATPRTATVSFEVGIAPLTGD-SALPLFIYSLVYFAIVILVSLY-PGKLLDTVGNFL 151 (439)
T ss_pred HHHHH-HHHHH-HH----HHhhccccCCccccchhheeeccCCc-ccHHHHHHHHHHHHHHHHHHcC-hhhHHHHhHHHH
Confidence 56522 11111 11 11111122121111111 11100 0011122233333344444432 233344444444
Q ss_pred HHHHHHHHHHHhhhcccccCCCC--ccccCCCC---CchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCC-
Q 014861 183 AVMSLSYSTIAWVVPLEKGVEPD--VDYSYNAK---STTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG- 256 (417)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~- 256 (417)
.-..++.+.+++...+.+...+. ....+.+. ....+-.+-+.+++-..|+-.....+- .+.. +|+++.
T Consensus 152 TP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~--~~G~----~~~~~~~ 225 (439)
T PRK15433 152 APLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAAR--SRGV----TEARLLT 225 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCC----CCHHHHH
Confidence 33333333333344443321110 10011011 111222344567777777654333331 1112 333321
Q ss_pred -CcchHHHHHHHHHHHHHHhHhhhhhhc---ccCC-ChHHHhhCCC---CchHHHHHHHHHHHHHHHhhcccccccHHHH
Q 014861 257 -PMWKGVVVAYIIVAICYFPVALVGYYI---FGNT-VEDNILLTLE---KPIWIVAAANLFVVVHVIGSYQIFAMPVFDM 328 (417)
Q Consensus 257 -~~~~~~~~a~~~~~~~y~~~g~~gy~~---fG~~-~~~~il~~~~---~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 328 (417)
...++-.++.....++|...+..|... +++. ..+.++...- -+++...+..+.+.+.++++---+...+.+.
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122444566677777888888887654 3322 2334444431 1245555556666666666666666666666
Q ss_pred HHHHH
Q 014861 329 IETFL 333 (417)
Q Consensus 329 l~~~~ 333 (417)
+++.+
T Consensus 306 f~~~~ 310 (439)
T PRK15433 306 FAQYV 310 (439)
T ss_pred HHhhc
Confidence 66654
No 92
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=93.04 E-value=1.1 Score=46.40 Aligned_cols=100 Identities=17% Similarity=0.309 Sum_probs=72.1
Q ss_pred HHHHHHHhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcch--hcCCcccCcHHHHHHhhcCCcccce
Q 014861 35 SAFHNVTAMVGAGV-LSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHE--MVPGKRFDRYHELGQGAFGDKLGLW 111 (417)
Q Consensus 35 ~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~--~~~~~~~~~y~~l~~~~~G~~~g~~ 111 (417)
-+.=.+-.++|.=. +-|-+....+|...+.++.++|.+.+..|..-+...+. -.+..+ +|.-+.| .+||.+| -
T Consensus 120 VyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISR-sLGPEFG-g 195 (1075)
T KOG2082|consen 120 VYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISR-SLGPEFG-G 195 (1075)
T ss_pred eeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEec-ccCcccc-c
Confidence 33445555666533 56778888999999999999998888887777766432 122323 7777766 6788899 8
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhhHHH
Q 014861 112 IVVPQQVIVEVSTNIIYMVTGGKSFKK 138 (417)
Q Consensus 112 ~v~~~~~~~~~g~~~~y~i~~~~~l~~ 138 (417)
.+.+|.++..--....|++..-+.+-.
T Consensus 196 AVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 196 AVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred eeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 899999988888888888877665543
No 93
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=93.03 E-value=9.8 Score=37.40 Aligned_cols=85 Identities=13% Similarity=0.016 Sum_probs=47.3
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHH---HHHHHhcchhcCCcc--cCcHH
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMSHLGWGPGIAVLIISWVVTLYT---LWQMVEMHEMVPGKR--FDRYH 97 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~gi~~~~~~~~~~~~s---~~~l~~~~~~~~~~~--~~~y~ 97 (417)
++++++.|-+++.+.-+.+.+|+|- -...-+..-.| +.+++.+-+++++..-+ =..|..-.+.+++++ +-.-.
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 3455679999999999999999985 45555665544 33444444444443322 222222122121111 12245
Q ss_pred HHHHhhcCCccc
Q 014861 98 ELGQGAFGDKLG 109 (417)
Q Consensus 98 ~l~~~~~G~~~g 109 (417)
...|+.+|.|+.
T Consensus 92 yyi~~gl~~k~l 103 (416)
T PF01235_consen 92 YYIEKGLGSKWL 103 (416)
T ss_pred HHHHHHhccchH
Confidence 667788887654
No 94
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=92.24 E-value=4.9 Score=41.00 Aligned_cols=239 Identities=11% Similarity=0.078 Sum_probs=109.0
Q ss_pred cCCCchhHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhc--chhcCCcccCcHHHHHHhh
Q 014861 27 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEM--HEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~--~~~~~~~~~~~y~~l~~~~ 103 (417)
.|+..++-..+.+..+.+|++ ++++|....+.|.-.... . +........+... ...+ +.+..+-.|..|+-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~--~---~~~l~~~~~~~~~f~Pvf~-~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFF--E---WNALLSVLLLGWIFIPVFY-RLGVTTMYEYLEKR 117 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHH--H---HHHHHHHHhhheEEEEEEE-ecCeeehhHHHHHH
Confidence 456777777788888888775 588998877766532211 1 1111122222221 1112 22355778888888
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
||++ .+....+...++.+.-...++..-+-.+++.. +++.....++..++...-.....++..-|+=.+..
T Consensus 118 f~~~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvt--------g~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 118 FGGR-VRYLATLSFILMIFLYLPVDMYAPALAINQVT--------GINLYLIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred hccc-chhhHHHHHHHHHHhheeeeEeehHHHHHHHh--------ccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 8875 44555554444443333333322232223322 22222222323333333333445555555555555
Q ss_pred HHHHHHHHHHhhhccc-ccC---------CCC----c-cccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCc
Q 014861 184 VMSLSYSTIAWVVPLE-KGV---------EPD----V-DYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPS 248 (417)
Q Consensus 184 ~~~~~~~~~~~~~~~~-~~~---------~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 248 (417)
...+.-...+.+.... .|- ..+ . +...+.......|.-++.....-..-|+.+++...=+-.+
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl-- 266 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSL-- 266 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcc--
Confidence 5444323223222221 110 000 1 1111112222334434444555556667777765444444
Q ss_pred CCCCCCCCCcchHHHHHHHHHH---HHHHhHhhhhhhcccC
Q 014861 249 TPEKPSKGPMWKGVVVAYIIVA---ICYFPVALVGYYIFGN 286 (417)
Q Consensus 249 ~~~~~~~~~~~~~~~~a~~~~~---~~y~~~g~~gy~~fG~ 286 (417)
|+.+..++.......... .++...|+..|..|-|
T Consensus 267 ----~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 267 ----PSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred ----ccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 333333355554444444 3445556666666643
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=89.89 E-value=4.2 Score=39.48 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=78.6
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhh
Q 014861 55 MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGK 134 (417)
Q Consensus 55 ~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~ 134 (417)
....|++.++.+.++-..+.+.+..-=.... ..+++..=..+..++.||+ .|+.+..+++.+.|.-++++-....+|
T Consensus 226 ~~~aglIa~i~La~iY~~L~ylGa~s~~~~~--~~~nG~~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~ae 302 (431)
T COG1114 226 TIKAGLIAAILLALIYLSLFYLGATSASAAG--LAANGGQILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAE 302 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhhcc--cccchHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666665555544444410000000 1111223577889999997 899999999999999999999999999
Q ss_pred hHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 135 SFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
+.++..+. .+...|..+..+.-+..+.+ .++++-..|.--..
T Consensus 303 fF~~~~p~-------~SY~~~v~if~i~sflvan~-GL~~Ii~isvPvL~ 344 (431)
T COG1114 303 FFSKLVPK-------LSYKTWVIIFTLISFLVANL-GLEQIIKISVPVLT 344 (431)
T ss_pred HHHHhccc-------ccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 99998753 55577788877777777665 45555555544433
No 96
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=87.49 E-value=5.2 Score=39.50 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=74.4
Q ss_pred HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCC--cccCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHh
Q 014861 55 MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPG--KRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTG 132 (417)
Q Consensus 55 ~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~--~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~ 132 (417)
..++|.+.++.+.++-..+.+.+... ....++ ++..=.....++.+|+ +|+.+..+.+.+.|+-++++-....
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s----~~~~~~~~~g~~il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~ 302 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDS----ASLVDQSANGAAILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCAC 302 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----cccccCCCcHhHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555544444443311 110111 1222355668899997 7889999999999999999999999
Q ss_pred hhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHH
Q 014861 133 GKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLA 181 (417)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~ 181 (417)
+|++++..+ .+.+.|..+..++.++++... ++++-..++-
T Consensus 303 a~~f~~~~~--------isY~~~v~i~~l~S~~lSn~G-~~~II~~s~P 342 (439)
T PRK15433 303 AEFFAQYVP--------LSYRTLVFILGGFSMVVSNLG-LSQLIQISVP 342 (439)
T ss_pred HHHHHhhcC--------CcHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 999888752 555788888888888888763 5444444433
No 97
>PHA02764 hypothetical protein; Provisional
Probab=86.67 E-value=2 Score=40.04 Aligned_cols=90 Identities=14% Similarity=0.031 Sum_probs=57.2
Q ss_pred cCCCchhHHHH-HHHHhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhh
Q 014861 27 SRNAKWWYSAF-HNVTAMVGAGVLSLPYAMSHL--GWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 27 ~~~~s~~~~~~-~l~~~~iG~GiL~lP~~~~~~--G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~ 103 (417)
-|+.+.+.+.+ |+.+...|.++ +.|+-+... |.. .....++.++++........|...+.|..+ .-....+++
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYISRA 86 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIRTA 86 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhHHh
Confidence 45677788877 66666666654 556643333 432 556667777778877777887665555543 334556778
Q ss_pred cCCcccceehhHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVE 121 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~ 121 (417)
+||.+| .+..+..++..
T Consensus 87 FGP~~G-FLvG~a~WLtl 103 (399)
T PHA02764 87 FSSKFY-TIFGISLWLTY 103 (399)
T ss_pred hCccHH-HHHHHHHHHHH
Confidence 998777 66666555544
No 98
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=81.21 E-value=55 Score=32.74 Aligned_cols=162 Identities=10% Similarity=0.095 Sum_probs=81.0
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHH----H-HHh--hChh---------HHHHHHHHHHHHHHHHHHHHHhc---ch
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPY----A-MSH--LGWG---------PGIAVLIISWVVTLYTLWQMVEM---HE 86 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~----~-~~~--~G~~---------~gi~~~~~~~~~~~~s~~~l~~~---~~ 86 (417)
++++-|.++-...+..+-+|+|++.-.. . +++ .|.- .+.....+=+-+..++.+.+.-. .-
T Consensus 33 ~kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~ 112 (453)
T TIGR00842 33 EKPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYF 112 (453)
T ss_pred CCCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 4567788888888999999999876542 2 211 1211 12222222233333444443332 11
Q ss_pred hcCCcccCcHHHHHHhhcCCc----ccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHH
Q 014861 87 MVPGKRFDRYHELGQGAFGDK----LGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAI 162 (417)
Q Consensus 87 ~~~~~~~~~y~~l~~~~~G~~----~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (417)
.+++++..+.++..+-.+|+| .| .++|+...+...+....-+-.....++.-+++..+-.........++....+
T Consensus 113 ~~rk~~~~~iss~~~pllG~~~~g~~g-~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~~~~~~~ii~~i~~ 191 (453)
T TIGR00842 113 HVRKGLPLRLSSALVPLLGERVNGPIG-KAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDSFWLQALIILCVTA 191 (453)
T ss_pred heecCCCCchhhhhhcccCCcccCccH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 223333456777777777643 45 4677777766655555555555555665555554311111111111222223
Q ss_pred HHHHhhCCCC-chhHHHHHHHHHHHHH
Q 014861 163 HFVLSHLPNF-NSISVVSLAAAVMSLS 188 (417)
Q Consensus 163 ~~pl~~~~~~-~~l~~~s~~~~~~~~~ 188 (417)
++-.+....+ |.+|+.|-+.+...+.
T Consensus 192 ~f~~S~~~Gl~kGIk~LS~~n~~l~~~ 218 (453)
T TIGR00842 192 LACISVASGVGKGIKILSNINMALAFL 218 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333 5566666666664443
No 99
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=80.69 E-value=28 Score=35.14 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=83.7
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHHH----H-HHh--hChh--------HHHHHHHHHHHHHHHHHHHHHhcch--
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPY----A-MSH--LGWG--------PGIAVLIISWVVTLYTLWQMVEMHE-- 86 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~----~-~~~--~G~~--------~gi~~~~~~~~~~~~s~~~l~~~~~-- 86 (417)
+++++.-+..+-.+.+..+-+|.|++..+- . +++ -|.. .+.....+=+-+..++.+.+.-.+-
T Consensus 82 ~~~~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaY 161 (537)
T COG1292 82 DDEKPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAY 161 (537)
T ss_pred CCCCCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhe
Confidence 345556778888888999999999876542 1 111 1111 2333334444444444444443211
Q ss_pred -hcCCcc-----cCcHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHH--
Q 014861 87 -MVPGKR-----FDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMI-- 158 (417)
Q Consensus 87 -~~~~~~-----~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i-- 158 (417)
.+++++ ..=|+=+.++.-|+ +| ..+|++-.+........-+-..+..++.-++...+- +.+......+
T Consensus 162 f~~rk~~pl~lss~l~Pllg~~~~G~-~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gi--p~~~~~q~~iI~ 237 (537)
T COG1292 162 FHYRKGLPLLLSSALYPLLGERIKGP-IG-HAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGI--PNSFAVQAIIIA 237 (537)
T ss_pred eeEecCCCchhhhhhhhhhcccccCc-cc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 111111 12255666676675 78 688998888776666666667777777766665431 1111222222
Q ss_pred HHHHHHHHhhCCCC-chhHHHHHHHHHHHH
Q 014861 159 FAAIHFVLSHLPNF-NSISVVSLAAAVMSL 187 (417)
Q Consensus 159 ~~~~~~pl~~~~~~-~~l~~~s~~~~~~~~ 187 (417)
...+++-.+....+ |.+|..|-+-+....
T Consensus 238 vi~~~~~~S~~sGv~KGIr~LS~~n~~la~ 267 (537)
T COG1292 238 VITALFTISVWSGLDKGIRVLSNINMVLAF 267 (537)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22233344433333 556666655555433
No 100
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=80.69 E-value=60 Score=31.81 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=40.6
Q ss_pred cHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHH--HHHHHHHHhhCCCC
Q 014861 95 RYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMI--FAAIHFVLSHLPNF 172 (417)
Q Consensus 95 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~~ 172 (417)
+..|++++-++| ++++...+...+...+...+.....+.-++.++ +.+...+..+ ...+.+.+.+.++.
T Consensus 65 ~l~~~~r~~~~~-~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~--------g~p~~~~v~~~~~~~~~~~~~~~~~y 135 (390)
T TIGR01197 65 DLAEVCREHYPK-VPRITLWILAELAIIATDMAEVIGTAIALNLLS--------HIPLWGGVLITIVDVFLFLFLDKPGL 135 (390)
T ss_pred CHHHHHHHHCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCcHHHHHHHHHHHHHHHHHHHhCCc
Confidence 799999999986 455555555544445555555444444444433 1222333333 22333344455666
Q ss_pred chhHHH
Q 014861 173 NSISVV 178 (417)
Q Consensus 173 ~~l~~~ 178 (417)
+.+..+
T Consensus 136 r~~E~~ 141 (390)
T TIGR01197 136 RILEAF 141 (390)
T ss_pred eeHHHH
Confidence 666666
No 101
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=79.94 E-value=60 Score=31.36 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=87.9
Q ss_pred cCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHH-HHHHHHHHHHHHhc-chhcCCcccCcHHHHHHhh
Q 014861 27 SRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVLIIS-WVVTLYTLWQMVEM-HEMVPGKRFDRYHELGQGA 103 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~~~~-~~~~~~s~~~l~~~-~~~~~~~~~~~y~~l~~~~ 103 (417)
.|+.+-+.-.+....+-+++ ..++=|.+-.+.|+.+ +++... --..+++.-.+.+- ++..++.+..|..|+-++=
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~R 115 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFAR 115 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHH
Confidence 45566666666666666665 4466788888878644 333322 22333344444431 1111122345899999888
Q ss_pred cCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 014861 104 FGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAA 182 (417)
Q Consensus 104 ~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~ 182 (417)
+-.+.-.++..+...+...+.+++..+..++.++... +.+...-.++++..+..-......+....+-.+.
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQ 186 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------GIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQ 186 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------CCCchhhHHHHHHHHHHHHhhcceeeeehHHHHH
Confidence 7555666777888888888888888888888777664 3444555566666665555555555555443333
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=79.17 E-value=73 Score=31.90 Aligned_cols=294 Identities=15% Similarity=0.122 Sum_probs=131.3
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChh--HHHHHHHHHHHHHHHHHHHHHhcchhcCCcc-cCcHHHHHH
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWG--PGIAVLIISWVVTLYTLWQMVEMHEMVPGKR-FDRYHELGQ 101 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~--~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~-~~~y~~l~~ 101 (417)
+++|.-|+++-...=..-.++.+..-+....-+.|+- -+++.+.+. ..++...+. ...++|.. +.+++-..|
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG---~~~~~~f~~--lns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVG---YLFTAIFLV--LNSRPGSDYHISFPVLSR 125 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHH---HHHHHHHHH--HccCCCcccccceeeeee
Confidence 4466778888877777777777776666666666752 222222211 111111222 22344443 457778888
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHH---HHHhhhhHHHHHhhhcC---------CcccccchhhH--HHHHHHHHHHh
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIY---MVTGGKSFKKAHEVICP---------SCKEIKTSYWI--MIFAAIHFVLS 167 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y---~i~~~~~l~~~~~~~~~---------~~~~~~~~~~~--~i~~~~~~pl~ 167 (417)
..||- +|.. +.+..-....|+=| .-+.++..+-+++.+.. +....+...++ +++=++-+|..
T Consensus 126 ~sFGi-ygS~---~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 126 SSFGI-YGSL---WPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eehhh-hHhH---HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 88874 4422 22222222233322 22344555545444332 11112222332 23333445555
Q ss_pred hCCCCchhHHHHHHHHHHHHHH--HHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhc-cCccchhhhhh
Q 014861 168 HLPNFNSISVVSLAAAVMSLSY--STIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAY-AGHNVVLEIQA 244 (417)
Q Consensus 168 ~~~~~~~l~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~ 244 (417)
+.| ++.+|..-...-+..... ..+++...=.+|. .+...+..+........-++.++.-++-.| ...-|.|...|
T Consensus 202 ~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~-G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsR 279 (572)
T KOG2466|consen 202 WFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGL-GHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSR 279 (572)
T ss_pred ecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCc-cccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHh
Confidence 554 555555544333322221 1222222222331 111111111111111122223333333333 23567777777
Q ss_pred cCCcCCCCCCCCCcchHHHHHHHHHHHHHHh----HhhhhhhcccCCChH--HHhhCCCCc------hHHHHHHHHHHHH
Q 014861 245 TIPSTPEKPSKGPMWKGVVVAYIIVAICYFP----VALVGYYIFGNTVED--NILLTLEKP------IWIVAAANLFVVV 312 (417)
Q Consensus 245 ~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~----~g~~gy~~fG~~~~~--~il~~~~~~------~~~~~~~~~~~~i 312 (417)
-- |+|.+.- ..-.+++.+.+.+..+ .+..++..||.+.-+ +++.++-+. .....++.+.+++
T Consensus 280 F~----ksp~a~~--~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~l 353 (572)
T KOG2466|consen 280 FA----KSPNAIW--WGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFAL 353 (572)
T ss_pred hc----CCCCccc--hhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence 66 5565433 3333444444444444 455678899986533 566554221 2344445554454
Q ss_pred HHH-hhcccccccHHHHHHHHHhh
Q 014861 313 HVI-GSYQIFAMPVFDMIETFLVK 335 (417)
Q Consensus 313 ~~~-~s~pl~~~~~~~~l~~~~~~ 335 (417)
+.+ ....-+..++-..+..++++
T Consensus 354 aql~~NISan~vaagnDl~~L~Pk 377 (572)
T KOG2466|consen 354 AQLGTNISANSVAAGNDLSALLPK 377 (572)
T ss_pred HHHhcchhccccccchhhHhhCcc
Confidence 443 23334445555555555554
No 103
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=76.91 E-value=88 Score=31.63 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=83.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHH-----HHHh--hCh--------hHHHHHHHHHHHHHHHHHHHHHhc---ch
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-----AMSH--LGW--------GPGIAVLIISWVVTLYTLWQMVEM---HE 86 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-----~~~~--~G~--------~~gi~~~~~~~~~~~~s~~~l~~~---~~ 86 (417)
+++++-|.++-...+..+-+|+|++.-.. -+.+ .|. ..+.....+=+-+..|+.+.+.-. ..
T Consensus 70 d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~ 149 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYF 149 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhee
Confidence 45667888999999999999999876542 1111 110 011111122122222222222111 00
Q ss_pred hcCCcccCc-----HHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHH
Q 014861 87 MVPGKRFDR-----YHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAA 161 (417)
Q Consensus 87 ~~~~~~~~~-----y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (417)
.+.+++..+ ++-+.++.-|+ .| .++|+...+...+....-+-.....++.-++...+-..+......+++...
T Consensus 150 ~y~k~~~~~~ss~l~pl~g~~~~g~-~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~ 227 (485)
T PF02028_consen 150 FYNKGKPLRISSALYPLLGDRINGP-LG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVIT 227 (485)
T ss_dssp HHTS---SSGGGGCHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHH
T ss_pred eeecCCCCchhhhhhhhcCCcccCc-ch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 011111112 45555555564 67 678888888777777777777777777777766541111111222233333
Q ss_pred HHHHHhhCCCC-chhHHHHHHHHHHHHHHH
Q 014861 162 IHFVLSHLPNF-NSISVVSLAAAVMSLSYS 190 (417)
Q Consensus 162 ~~~pl~~~~~~-~~l~~~s~~~~~~~~~~~ 190 (417)
+++-.+....+ |.+++.|-+.+...+..+
T Consensus 228 ~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll 257 (485)
T PF02028_consen 228 VIFTISAVSGLDKGIKRLSNINVYLAFALL 257 (485)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566 558888877777655433
No 104
>PRK09928 choline transport protein BetT; Provisional
Probab=76.65 E-value=89 Score=32.90 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=84.4
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHHHH-----HHh--hCh-------hHHHHHHHHHHHHHHHHHHHHHhcc---h
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-----MSH--LGW-------GPGIAVLIISWVVTLYTLWQMVEMH---E 86 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-----~~~--~G~-------~~gi~~~~~~~~~~~~s~~~l~~~~---~ 86 (417)
++++++-|.++-...+..+-+|+|++.--.+ +.+ .|- -.+.....+=+-+..|+.+.+.-.. .
T Consensus 87 ~d~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf 166 (679)
T PRK09928 87 EQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYF 166 (679)
T ss_pred CCCCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3446778888999999999999999765421 211 121 1233333443444445555444421 1
Q ss_pred hcCCcccCcHHHHHHhhcCCc----ccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHH
Q 014861 87 MVPGKRFDRYHELGQGAFGDK----LGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAI 162 (417)
Q Consensus 87 ~~~~~~~~~y~~l~~~~~G~~----~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (417)
.+..++..+.++..+-.+|+| +| .++|+...+...+....-+-.....++.-++..++-..+......+++...+
T Consensus 167 ~yr~~~pl~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~~ 245 (679)
T PRK09928 167 SYRYNLPLTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSVI 245 (679)
T ss_pred hhcCCCCCchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 122222245555555555432 67 5778777776654444445455555555555554311111112222222334
Q ss_pred HHHHhhCCCC-chhHHHHHHHHHHHHHHH
Q 014861 163 HFVLSHLPNF-NSISVVSLAAAVMSLSYS 190 (417)
Q Consensus 163 ~~pl~~~~~~-~~l~~~s~~~~~~~~~~~ 190 (417)
++-++....+ |.+++.|-+.+...+..+
T Consensus 246 i~~~S~~sGl~KGIk~LS~lN~~La~~Ll 274 (679)
T PRK09928 246 IATISVTSGVNKGIRVLSELNVLLALGLI 274 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 567777777766544433
No 105
>PRK09950 putative transporter; Provisional
Probab=76.63 E-value=91 Score=31.67 Aligned_cols=164 Identities=13% Similarity=0.155 Sum_probs=90.1
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHH----H-HHh--hCh--------hHHHHHHHHHHHHHHHHHHHHHhc---c-h
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPY----A-MSH--LGW--------GPGIAVLIISWVVTLYTLWQMVEM---H-E 86 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~----~-~~~--~G~--------~~gi~~~~~~~~~~~~s~~~l~~~---~-~ 86 (417)
++++-|.++-...+..+-+|+|++.--. . +++ .|. -.+.....+=+-+..++.+.+.-. . -
T Consensus 80 ~kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~ 159 (506)
T PRK09950 80 GKPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHF 159 (506)
T ss_pred CCCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3677888888999999999999876432 1 211 121 112222233333334444443332 1 1
Q ss_pred hcCCcccCcHHHHHHhhcCCc----ccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHH
Q 014861 87 MVPGKRFDRYHELGQGAFGDK----LGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAI 162 (417)
Q Consensus 87 ~~~~~~~~~y~~l~~~~~G~~----~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (417)
++++++..+.++..+-.+|+| .| .++|+...+...+....-+-.....++.-++...+-..+......++....+
T Consensus 160 ~~rk~~pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~ 238 (506)
T PRK09950 160 HVRKNKGLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGV 238 (506)
T ss_pred HhhcCCCCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 223333456788877777743 45 5778888777766666666666666666666655311111122222333334
Q ss_pred HHHHhhCCCC-chhHHHHHHHHHHHHHHH
Q 014861 163 HFVLSHLPNF-NSISVVSLAAAVMSLSYS 190 (417)
Q Consensus 163 ~~pl~~~~~~-~~l~~~s~~~~~~~~~~~ 190 (417)
++-++....+ |.+|+.|-+.+...+..+
T Consensus 239 if~~S~~~Gl~kGIk~LS~~N~~la~~ll 267 (506)
T PRK09950 239 IFCLSSYIGIDNGLQRLSKMVGWGAFLFA 267 (506)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555 667777777776554433
No 106
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=67.96 E-value=13 Score=30.09 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=35.5
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
.+...+.+.++.+-.| |+-.|. .-.++.+--..+..+|++-.++-+.++... =-+++++-+|
T Consensus 117 ~s~rat~~aLi~s~F~--IfDvPV--------fwPILvvYfi~l~f~t~rRqIqHM~KYrY~----PfdigKkky~ 178 (180)
T COG5249 117 FSTRATGMALIGSYFG--IFDVPV--------FWPILVVYFIFLVFYTARRQIQHMKKYRYN----PFDIGKKKYK 178 (180)
T ss_pred HHHHHHHHHHHHHHHh--hhcchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhhhhhhhc
Confidence 3444555555555543 666664 234444555677888888888865544332 2456666554
No 107
>PRK10263 DNA translocase FtsK; Provisional
Probab=67.23 E-value=1.1e+02 Score=34.85 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhc
Q 014861 260 KGVVVAYIIVAICYFPVALVGYYI 283 (417)
Q Consensus 260 ~~~~~a~~~~~~~y~~~g~~gy~~ 283 (417)
+-....+++.+.+|++++++.|-.
T Consensus 23 ~E~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 23 LEALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 334456677788888888888765
No 108
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=64.10 E-value=1.7e+02 Score=29.72 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=85.5
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHH----HH-HHh--hCh--------hHHHHHHHHHHHHHHHHHHHHHhc---chh
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLP----YA-MSH--LGW--------GPGIAVLIISWVVTLYTLWQMVEM---HEM 87 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP----~~-~~~--~G~--------~~gi~~~~~~~~~~~~s~~~l~~~---~~~ 87 (417)
++++-|.++-...+..+-+|+|++.-- .. ++. .|. -.+.....+=+-++.++.+.+.-. ...
T Consensus 82 ~kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~ 161 (504)
T PRK03356 82 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFF 161 (504)
T ss_pred CCCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 367788888899999999999987653 22 111 121 112222233233334444444332 111
Q ss_pred cCCccc-CcHHHHHHhhcCCc-----ccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHH
Q 014861 88 VPGKRF-DRYHELGQGAFGDK-----LGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAA 161 (417)
Q Consensus 88 ~~~~~~-~~y~~l~~~~~G~~-----~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 161 (417)
+++++. .+.++..+-.+|+| .| .++|+...+...+....-+-.....++.-+++..+-..+......+++...
T Consensus 162 y~~~~p~l~iss~~~pllG~~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~i~ 240 (504)
T PRK03356 162 FVRKMDVIRPSSTLVPLVGEKHAKGLFG-TIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWI 240 (504)
T ss_pred HhcCCCcccHHHHHHHHcCCCcccCchH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 222222 35677777777732 45 567887777666666666666666666666665531111212222222233
Q ss_pred HHHHHhhCCCC-chhHHHHHHHHHHHHHH
Q 014861 162 IHFVLSHLPNF-NSISVVSLAAAVMSLSY 189 (417)
Q Consensus 162 ~~~pl~~~~~~-~~l~~~s~~~~~~~~~~ 189 (417)
+++-++....+ |.+|+.|-+.+...+..
T Consensus 241 ~if~~S~~~Gl~kGIk~LS~~N~~la~~l 269 (504)
T PRK03356 241 ILNAICVACGLQKGVRIASDVRSYLSFLM 269 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 55777777666654443
No 109
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=57.22 E-value=2.3e+02 Score=28.94 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=39.5
Q ss_pred cHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014861 95 RYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEV 142 (417)
Q Consensus 95 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 142 (417)
...++-..+.|+|.+ .....++.+..+..+++-++..++......++
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 688999999999866 78888888888999999999988888777654
No 110
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=53.20 E-value=2.9e+02 Score=28.97 Aligned_cols=105 Identities=13% Similarity=0.038 Sum_probs=54.6
Q ss_pred CchhHHHHHHHHhhhhhhhc-hHHHHHHhhCh----hHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 30 AKWWYSAFHNVTAMVGAGVL-SLPYAMSHLGW----GPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL-~lP~~~~~~G~----~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
.+..+-.+..++-.+|-|=. -.|+...+-|. ++-.+.+++.++=..+=-..+.+ ..+. .=....++..
T Consensus 38 ~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQ----f~~~---g~v~~wrri~ 110 (629)
T KOG3660|consen 38 KSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQ----FTSQ---GPVSVWRRIC 110 (629)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhh----hhcC---ChHHHHHHhC
Confidence 37889999999999999865 49998666554 22333333333333332222222 2221 1233333333
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhc
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVIC 144 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~ 144 (417)
| .- .-++....+......+-|.+.++-.+.-++..+.
T Consensus 111 -P-if-~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~ 147 (629)
T KOG3660|consen 111 -P-IF-KGVGWASVVISALLAIYYIVILAWALYYLFSSFT 147 (629)
T ss_pred -h-Hh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1 11 1133334444444566677777766666555443
No 111
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=45.71 E-value=25 Score=22.56 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhcccCCC
Q 014861 260 KGVVVAYIIVAICYFPVALVGYYIFGNTV 288 (417)
Q Consensus 260 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 288 (417)
.+...++.+..++..++|...|-+||+..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 46777788888888888888899999653
No 112
>CHL00020 psbN photosystem II protein N
Probab=45.17 E-value=21 Score=22.53 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccCCC
Q 014861 261 GVVVAYIIVAICYFPVALVGYYIFGNTV 288 (417)
Q Consensus 261 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 288 (417)
+...++.+..++..++|...|-+||+..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 5667778888888888888899999653
No 113
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=43.51 E-value=3.4e+02 Score=26.83 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=42.1
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHHHH-h--hChhHHHHHHHHHHHHHHH-HHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYAMS-H--LGWGPGIAVLIISWVVTLY-TLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~~~-~--~G~~~gi~~~~~~~~~~~~-s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
...+..-+.+..-..|+|=+-.|=... + ..+.++.+.++++++.-=. +...+. ..++ +++++.++. |
T Consensus 5 k~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a-----~~g~---~~~~l~~~i-~ 75 (431)
T COG1114 5 KDIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVA-----LYGG---GVESLATRI-G 75 (431)
T ss_pred hhHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhh-----ccCC---CHHHHhhhc-c
Confidence 455666777888899999999985533 2 2345566666665543332 222222 2232 688888865 4
Q ss_pred Cccc
Q 014861 106 DKLG 109 (417)
Q Consensus 106 ~~~g 109 (417)
|++|
T Consensus 76 ~~fg 79 (431)
T COG1114 76 PWFG 79 (431)
T ss_pred chHH
Confidence 5455
No 114
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=43.31 E-value=35 Score=29.02 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHccChhhhhhhh
Q 014861 345 LRLVTRSLYVAFTMIVAISVPFFGSLMGFF 374 (417)
Q Consensus 345 ~~~~~~~~~~~~~~~la~~vp~~~~i~~~~ 374 (417)
++.....+..+...++...+|.++.+++..
T Consensus 126 ~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~ 155 (182)
T PF00689_consen 126 KWLLIAILISIALQILIVYVPGLNRIFGTA 155 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTHHHHST--
T ss_pred chHHHHHHHHHHHHHHHhcchhhHhhhccc
Confidence 445555555666667777789888887776
No 115
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=42.65 E-value=26 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccCCC
Q 014861 261 GVVVAYIIVAICYFPVALVGYYIFGNTV 288 (417)
Q Consensus 261 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 288 (417)
+...++.+..++-.++|...|-+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4556777778888888888999999643
No 116
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=41.80 E-value=1.2e+02 Score=29.29 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=16.0
Q ss_pred hhhhhhhhhhcchhHHHHH
Q 014861 367 FGSLMGFFGGFALAPTSYY 385 (417)
Q Consensus 367 ~~~i~~~~Ga~~~~~~~f~ 385 (417)
.....+++|++.-+|+||.
T Consensus 135 ~a~l~s~TGgllLtPf~yl 153 (497)
T COG3851 135 NALLLSLTGGLLLTPFCYL 153 (497)
T ss_pred HHHHHHHhchHHHHHHHHH
Confidence 3456789999999999988
No 117
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=35.06 E-value=5.2e+02 Score=26.63 Aligned_cols=46 Identities=9% Similarity=-0.128 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014861 96 YHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEV 142 (417)
Q Consensus 96 y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 142 (417)
+.+..+. .|..+++.++.+......+++..+.+...+..+..+.++
T Consensus 301 ~~~a~~~-~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarD 346 (557)
T TIGR00906 301 FPVAFEY-VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARD 346 (557)
T ss_pred HHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444443 343345566666666677777777777777777666543
No 118
>TIGR00909 2A0306 amino acid transporter.
Probab=31.61 E-value=5e+02 Score=25.37 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=37.8
Q ss_pred cHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014861 95 RYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEV 142 (417)
Q Consensus 95 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 142 (417)
...++.++..|+ ++..++.+...+.++++..+.....++.+....++
T Consensus 265 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQG-IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566777777776 45578889999999999999999999988877644
No 119
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=30.18 E-value=2.7e+02 Score=28.22 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhHHHHHhhhcC----CcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 125 NIIYMVTGGKSFKKAHEVICP----SCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 125 ~~~y~i~~~~~l~~~~~~~~~----~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
+..+.+...|........... +...+.|..|.++.+++..-+.....++.++-.+.++-+
T Consensus 402 ~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~l 465 (485)
T PF02028_consen 402 IFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGL 465 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566655555544332 122345777888877777777777777777777666655
No 120
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=28.65 E-value=3.8e+02 Score=28.75 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=55.1
Q ss_pred HHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHHhHhhh-hhh--------cccCCChHHH
Q 014861 222 FFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALV-GYY--------IFGNTVEDNI 292 (417)
Q Consensus 222 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~~g~~-gy~--------~fG~~~~~~i 292 (417)
+...+++++=|=.|...=.+-..++ ||++| .++.....|...+..+|+...++ |-. -||+.+.++.
T Consensus 412 FtlLvgIfFPsVTGImaGSNrSGDL----kDaQk-SIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~l 486 (1075)
T KOG2082|consen 412 FTLLVGIFFPSVTGIMAGSNRSGDL----KDAQK-SIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNL 486 (1075)
T ss_pred HHHHHHhhccccceeeecCCCCccc----cchhh-cCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcE
Confidence 4445555555555555555556667 77776 47788888999998888765432 211 3555555543
Q ss_pred hh---CCCCchHHH----HHHHHHHHHHHHhhccccc
Q 014861 293 LL---TLEKPIWIV----AAANLFVVVHVIGSYQIFA 322 (417)
Q Consensus 293 l~---~~~~~~~~~----~~~~~~~~i~~~~s~pl~~ 322 (417)
+- .+|. .|.. .+......++.+++-|=++
T Consensus 487 Vva~laWPs-PwVi~IGsFlST~GAgLQsLtgAPRLL 522 (1075)
T KOG2082|consen 487 VVATLAWPS-PWVIVIGSFLSTCGAGLQSLTGAPRLL 522 (1075)
T ss_pred EEEEecCCC-ceeeehhHHHHHhHHHHhhhcCcHHHH
Confidence 22 2343 3433 3344455666667766544
No 121
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=27.88 E-value=2.9e+02 Score=23.05 Aligned_cols=67 Identities=19% Similarity=0.324 Sum_probs=48.4
Q ss_pred CcchHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccH
Q 014861 257 PMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPV 325 (417)
Q Consensus 257 ~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 325 (417)
+.+|.+-..+-...++-.++|+..-..+.++. ++.+-++-++|.-.+..+++.++-+..+....+|.
T Consensus 45 ~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 45 LLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34477788888888888888887766665543 23222344678888888899999999988888885
No 122
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=27.24 E-value=3.7e+02 Score=22.40 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhhh
Q 014861 260 KGVVVAYIIVAICYFPVALVGY 281 (417)
Q Consensus 260 ~~~~~a~~~~~~~y~~~g~~gy 281 (417)
|-+.........+|+..++..|
T Consensus 5 ~~i~~~~l~~~~~fl~~al~sy 26 (171)
T PF13491_consen 5 REILGIALLLLALFLLLALISY 26 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 6677777778888888888888
No 123
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=26.41 E-value=1.1e+02 Score=20.36 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhcccCCChH
Q 014861 260 KGVVVAYIIVAICYFPVALVGYYIFGNTVED 290 (417)
Q Consensus 260 ~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~ 290 (417)
.-+..=..++.++|++.|+.-+..+.+++..
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~~~ 53 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDDKK 53 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcccc
Confidence 4556667788999999999988777665543
No 124
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.93 E-value=2.2e+02 Score=22.45 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=15.3
Q ss_pred CchhHHHHHHHHhhhhhhhchHHHH
Q 014861 30 AKWWYSAFHNVTAMVGAGVLSLPYA 54 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~GiL~lP~~ 54 (417)
..+..-.+.+.-.++|+..+.+...
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l 63 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLL 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667766666654
No 125
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.08 E-value=1.7e+02 Score=23.23 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.3
Q ss_pred hhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhc
Q 014861 42 AMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEM 84 (417)
Q Consensus 42 ~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~ 84 (417)
..+|.++++.-. +.|-+.+....+.+-.+..|+..++.+-
T Consensus 46 g~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kR 85 (126)
T COG5264 46 GGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKR 85 (126)
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777666 7777778888888888888888888773
No 126
>PLN02680 carbon-monoxide oxygenase
Probab=20.27 E-value=6.4e+02 Score=22.70 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCCCCchHHHHHHHHHHHHHHHhhcccccccH
Q 014861 258 MWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPV 325 (417)
Q Consensus 258 ~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 325 (417)
.+|.+-..+-...++...+|+....-+.++. ++-+-++-++|.-...-+++.++....+....+|.
T Consensus 78 ~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 78 LKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4477888888888888888886655554433 44333444688888888888888888887777774
Done!