Query 014861
Match_columns 417
No_of_seqs 138 out of 1458
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 1.5E-14 5.1E-19 142.8 22.8 248 25-286 5-252 (445)
2 3gia_A Uncharacterized protein 99.5 4.6E-12 1.6E-16 124.9 26.6 240 26-285 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.3 1E-09 3.6E-14 109.9 26.0 283 25-323 8-310 (511)
4 2jln_A MHP1; hydantoin, transp 98.6 1.2E-05 4E-10 80.0 23.5 330 27-381 24-373 (501)
5 3dh4_A Sodium/glucose cotransp 97.5 0.0031 1.1E-07 63.0 17.3 149 26-187 18-168 (530)
6 2xq2_A Sodium/glucose cotransp 96.5 0.32 1.1E-05 49.1 21.1 148 27-187 48-197 (593)
7 2a65_A Leutaa, Na(+):neurotran 96.1 1.2 4.2E-05 43.8 29.1 237 30-275 9-292 (519)
8 4ain_A Glycine betaine transpo 77.1 8.2 0.00028 37.8 8.6 160 24-185 90-272 (539)
9 2wsw_A BCCT family betaine/car 65.2 99 0.0034 30.0 13.1 162 26-189 87-274 (509)
10 3gia_A Uncharacterized protein 13.9 7.1E+02 0.024 22.8 9.2 47 95-142 259-305 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.65 E-value=1.5e-14 Score=142.80 Aligned_cols=248 Identities=15% Similarity=0.117 Sum_probs=166.2
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
+++|+.+.++..+..+++++|+|++.+|....+.|. .+++..++.++........+.|...+.|+.+ +..+..++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence 356789999999999999999999999999888886 4788888899999999999999877777654 7888899999
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
||++| ++.....++.......++....+++++..++... .++.... ..+..+.++-....+..+...+++.+...
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DPWVLTI-TCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---ccHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99888 7888888877777777777777777665543321 0011111 11112222223334456666666555544
Q ss_pred HHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHH
Q 014861 185 MSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV 264 (417)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~ 264 (417)
..+..+.++....+.+.+.+.....++. ....++.++..++....|+|.|........+|+ |||+| +.+|++..
T Consensus 157 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~ 230 (445)
T 3l1l_A 157 LALIPIVGIAVFGWFWFRGETYMAAWNV-SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIG 230 (445)
T ss_dssp HHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhcccccCc-cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHH
Confidence 4333222222222222111111111111 111235678889999999999999999999999 78865 57799999
Q ss_pred HHHHHHHHHHhHhhhhhhcccC
Q 014861 265 AYIIVAICYFPVALVGYYIFGN 286 (417)
Q Consensus 265 a~~~~~~~y~~~g~~gy~~fG~ 286 (417)
+...+.++|++..+......+.
T Consensus 231 ~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 231 GVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCH
Confidence 9999999999998887766654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.52 E-value=4.6e-12 Score=124.86 Aligned_cols=240 Identities=15% Similarity=0.137 Sum_probs=162.8
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~-~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
++|+.+.++..+..+++++|+|++..|.. .+++|. ..++.+++.+++.......+.|...+.|..+ ...+..++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHh
Confidence 56889999999999999999999998855 555665 6788888889999999999999877677644 6888999999
Q ss_pred CCcc-cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhH-H--HHHHHHHHHhhCCCCchhHHHHH
Q 014861 105 GDKL-GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWI-M--IFAAIHFVLSHLPNFNSISVVSL 180 (417)
Q Consensus 105 G~~~-g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~--i~~~~~~pl~~~~~~~~l~~~s~ 180 (417)
||++ + ..+....++........+....++++...++.. +..++. + +...+++-....+..+...+++.
T Consensus 81 G~~~~~-g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 152 (444)
T 3gia_A 81 GDNIIT-GALSILLWMSYVISIALFAKGFAGYFLPLINAP-------INTFNIAITEIGIVAFFTALNFFGSKAVGRAEF 152 (444)
T ss_dssp CSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9863 2 233455566666667777777777777665321 112221 1 12222222333445666666655
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcch
Q 014861 181 AAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWK 260 (417)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~ 260 (417)
......+..+.++++..+...+.++. ....++.++.++..++....|+|.|+..+....+|+ |||+| +.+|
T Consensus 153 ~~~~~~i~~~~~~ii~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ 223 (444)
T 3gia_A 153 FIVLVKLLILGLFIFAGLITIHPSYV----IPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPR 223 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCGGGT----SCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhc----CCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhH
Confidence 55443333222222222222111111 112344566788899999999999999999999999 78865 5779
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccc
Q 014861 261 GVVVAYIIVAICYFPVALVGYYIFG 285 (417)
Q Consensus 261 ~~~~a~~~~~~~y~~~g~~gy~~fG 285 (417)
++..+...+.++|.+..+......+
T Consensus 224 ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 224 AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998877665554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.28 E-value=1e-09 Score=109.94 Aligned_cols=283 Identities=8% Similarity=0.059 Sum_probs=158.0
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcch--hcCCcccCcHHHHHH
Q 014861 25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVT-LYTLWQMVEMHE--MVPGKRFDRYHELGQ 101 (417)
Q Consensus 25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~-~~s~~~l~~~~~--~~~~~~~~~y~~l~~ 101 (417)
+.+|+.+.++.++..++.++| +..+|. ..+.|. ..++..++.+++. ......+.|... ..| .+ ......+
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~-~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~~ 80 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGF-SLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWVS 80 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTT-HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhHH
Confidence 456789999999999999986 677776 466665 3444444444443 347778888766 677 54 7888999
Q ss_pred hhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHH--hhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHH
Q 014861 102 GAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAH--EVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVS 179 (417)
Q Consensus 102 ~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s 179 (417)
+.+||++| ++.....++.......++....++.++.++ +... ...+.... ..+..++++-....+..+...+++
T Consensus 81 ~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~-~~~~~~~~~~~in~~g~~~~~~~~ 156 (511)
T 4djk_A 81 NTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN--EDPITKTI-AALIILWALALTQFGGTKYTARIA 156 (511)
T ss_dssp HHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT--SCSSHHHH-HHHHHHHHHHHHHHTCSSSHHHHT
T ss_pred hhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--cCcHHHHH-HHHHHHHHHHHHHHhChHHHHHHH
Confidence 99999888 778888777777666667666666665442 1111 11111111 122222223333445666666665
Q ss_pred HHHHHHH-HHHHHHHhhhc---ccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCC
Q 014861 180 LAAAVMS-LSYSTIAWVVP---LEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 255 (417)
Q Consensus 180 ~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~ 255 (417)
....... +..+++++... ...+...+.+.+.+...+.....+...++...+|+|.|........+|+ |||+|
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k~P~k 232 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM----SNPGR 232 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----SCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc----cCccc
Confidence 5543321 11111111111 1111111111011111011111223345778899999999999999999 88876
Q ss_pred CCcchHHHHHHHHHHHHHHhHhhhhhhcccCCChH----------HHhhCCC-CchHHHHHHHHHHHHHHHhhcccccc
Q 014861 256 GPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVED----------NILLTLE-KPIWIVAAANLFVVVHVIGSYQIFAM 323 (417)
Q Consensus 256 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~----------~il~~~~-~~~~~~~~~~~~~~i~~~~s~pl~~~ 323 (417)
+.+|++..++..+.++|++..+......+++..+ +...+.+ ...+...+..+...+..+.+.--...
T Consensus 233 -~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
T 4djk_A 233 -DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIV 310 (511)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988877666543211 1222232 02355555555555555555433333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.57 E-value=1.2e-05 Score=80.03 Aligned_cols=330 Identities=11% Similarity=0.043 Sum_probs=171.2
Q ss_pred cCCCchhHHHHHHHHhhhhhhhchHHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 27 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMSH-LGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~-~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
+|+.+.++-...-.+..++.+-+.+...+.. .++..+++.+++..++...-.........+. + .++.++.|..||
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-G---l~~~v~~R~~FG 99 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-G---INFTVAARMPFG 99 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-C---CCHHHHTTTTSC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-C---CChhhhhHhhcc
Confidence 4556777777777777766666666554443 3335555555555554444443443433222 3 369999999999
Q ss_pred CcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCccccc-chhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 106 DKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIK-TSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 106 ~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
++ |..+..+...+.++|-........++.++..++...+ .. .....++..++.++..+ ..++.+++...+...
T Consensus 100 ~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g----~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p 173 (501)
T 2jln_A 100 IR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG----FTNLPLWIVIFGAIQVVTTF-YGITFIRWMNVFASP 173 (501)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence 85 5578888888888888888888888888887654421 22 23344555566666664 457777777777665
Q ss_pred HHHHHHHHHhhhcccccCC--CCccccCCCCCchhhHhHHHHHHHhH-hhhccCccchhhhhhcCCcCCCCCCC---C--
Q 014861 185 MSLSYSTIAWVVPLEKGVE--PDVDYSYNAKSTTDAMFNFFTALGDV-AFAYAGHNVVLEIQATIPSTPEKPSK---G-- 256 (417)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~~i~~~m~~~~~~~~~---~-- 256 (417)
..++..+.+.+..+.+... .+.....+. .....+..++... .+.-....+.+...|.+ |++++ +
T Consensus 174 ~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~----~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~----~~~~~~~~~~~ 245 (501)
T 2jln_A 174 VLLAMGVYMVYLMLDGADVSLGEVMSMGGE----NPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC----KVDPNASREGQ 245 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHTTCCCS----SCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----CCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchhhhccCCc----cchHHHHHHHHHHHHHHHHHHhccCcccccC----CCCccccccch
Confidence 4443332222222222111 000000000 1112233333321 22223347788999998 44433 0
Q ss_pred -----CcchHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhC-CCCchHHHHHHH-HHHHHHHHhhccc-ccccHHHH
Q 014861 257 -----PMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLT-LEKPIWIVAAAN-LFVVVHVIGSYQI-FAMPVFDM 328 (417)
Q Consensus 257 -----~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~-~~~~~~~~~~~~-~~~~i~~~~s~pl-~~~~~~~~ 328 (417)
+.......+..+...+..++|.......+...+.+++.. ++...+...++- +...++.+.+--. +.++.-..
T Consensus 246 ~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~ 325 (501)
T 2jln_A 246 TKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYT 325 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 011233345555555555566544333344444445444 332222133444 5555555444443 67777777
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHc--cChhhhhhhhhhcchhH
Q 014861 329 IETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISV--PFFGSLMGFFGGFALAP 381 (417)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v--p~~~~i~~~~Ga~~~~~ 381 (417)
+.+...+. .++ ++.. .+..++.++++... ..+...+++.|....+.
T Consensus 326 l~~~~~~~----i~~-~~~~--~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~ 373 (501)
T 2jln_A 326 LCSTFPRV----FTF-KTGV--IVSAVVGLLMMPWQFAGVLNTFLNLLASALGPL 373 (501)
T ss_dssp HHHHSTTT----CCH-HHHH--HHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHH
T ss_pred HHHhCccc----cch-hHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77665321 012 1111 12222333333332 34667777777776643
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.52 E-value=0.0031 Score=63.00 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=77.9
Q ss_pred ccCCCchhHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 26 SSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
..|+.+.+...+.+..+.+++ -.++.|-...+.|+........ .++........+....++ .+..|.+|..|+-|
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~---~~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KGIYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH---TTCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH---cCCccHHHHHHHHc
Confidence 357789999999999888887 4588998888888753221111 111111122222222222 23569999999999
Q ss_pred CCcccceehhHHHHH-HHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 014861 105 GDKLGLWIVVPQQVI-VEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAA 183 (417)
Q Consensus 105 G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~ 183 (417)
|++.. .+..+...+ +.+..+.+-+...+..++..+ +++....+++..++...-....-++...++..+..
T Consensus 94 g~~~~-~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~ 164 (530)
T 3dh4_A 94 NKKLK-TILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 164 (530)
T ss_dssp CHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHHHHTTC------CCSHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 98654 444443332 222222333333344444432 23334434444555555556667777777776666
Q ss_pred HHHH
Q 014861 184 VMSL 187 (417)
Q Consensus 184 ~~~~ 187 (417)
+..+
T Consensus 165 ~im~ 168 (530)
T 3dh4_A 165 FFLV 168 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6444
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.48 E-value=0.32 Score=49.06 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=77.1
Q ss_pred cCCCchhHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcC
Q 014861 27 SRNAKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFG 105 (417)
Q Consensus 27 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G 105 (417)
.|+.+.+...+.+..+.+++. .++.|....+.|+........ .++........+..-.++ .+..|.+|..++=||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KGIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH---TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh---CCCCCcHHHHHHHcc
Confidence 467888888888888777764 478898877888642211111 111111112222222222 235699999999999
Q ss_pred CcccceehhHHHHH-HHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861 106 DKLGLWIVVPQQVI-VEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV 184 (417)
Q Consensus 106 ~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~ 184 (417)
++.+ .+..+...+ ..+......+...+..++.++ +++.....++.+++...-....-++...++..+..+
T Consensus 124 ~~~~-~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 124 KKLK-TILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred CchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 7654 444433322 222223333334455555443 233344445555555666667777777777666666
Q ss_pred HHH
Q 014861 185 MSL 187 (417)
Q Consensus 185 ~~~ 187 (417)
..+
T Consensus 195 iml 197 (593)
T 2xq2_A 195 FLV 197 (593)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.10 E-value=1.2 Score=43.82 Aligned_cols=237 Identities=11% Similarity=0.052 Sum_probs=116.0
Q ss_pred CchhHHHHHHHHhhhhhh-hchHHHHHHhhChh----HHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861 30 AKWWYSAFHNVTAMVGAG-VLSLPYAMSHLGWG----PGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF 104 (417)
Q Consensus 30 ~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~----~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~ 104 (417)
.|-.+-++..+++.+|-| +.-.||...+-|.. +-++.+++.++--.+.=..+.|-..++.+. +-.+.-++..
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~---~~i~a~~~l~ 85 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG---TTPAIFYLLW 85 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCC---SHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCC---CHHHHHHHhc
Confidence 466788999999999998 78999998777743 223333333333333323333311101111 2222222222
Q ss_pred CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcc-------------------------------cccc-
Q 014861 105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCK-------------------------------EIKT- 152 (417)
Q Consensus 105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~-------------------------------~~~~- 152 (417)
.++.. ..+.....+..+..++-|.++.+-.+..+...+.++.. +...
T Consensus 86 ~~~~~-~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~ 164 (519)
T 2a65_A 86 RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKP 164 (519)
T ss_dssp CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCC
T ss_pred CCcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCc
Confidence 21111 23455555555666666666665555444433322100 0000
Q ss_pred hhhHH---HHHHHHHHHhhCCCC-chhHHHHHHHHHHHHHHHHHHhhhccc-cc----CCCCccc-cCCCCCchhhHhHH
Q 014861 153 SYWIM---IFAAIHFVLSHLPNF-NSISVVSLAAAVMSLSYSTIAWVVPLE-KG----VEPDVDY-SYNAKSTTDAMFNF 222 (417)
Q Consensus 153 ~~~~~---i~~~~~~pl~~~~~~-~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~-~~~~~~~~~~~~~~ 222 (417)
++..+ ....++.-++..|.+ +....++.+.+....+.++++.++.+. .| ..++.+. -.|++..-.+..-+
T Consensus 165 ~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw 244 (519)
T 2a65_A 165 SLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVW 244 (519)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHH
Confidence 11112 222333445667777 667888877776555444444444432 22 1111110 01112222233456
Q ss_pred HHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHHHHHHHHHHHHh
Q 014861 223 FTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFP 275 (417)
Q Consensus 223 ~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~a~~~~~~~y~~ 275 (417)
..+.+-..|+...-.-....+.+ .+|++.+..|........-+..-++
T Consensus 245 ~~A~gQ~FFSLslG~G~~ity~S-----Y~~~~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 245 IAAVGQIFFTLSLGFGAIITYAS-----YVRKDQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHT-----TSCTTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHhHHhhhhc-----ccCCCcChHhhHHHHHHHHHHHHHH
Confidence 78899999999876555555655 3344545556555444444444333
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=77.15 E-value=8.2 Score=37.85 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=81.9
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhchHH----HH-HHh--hC-----hhHHHHHHHHHHHHHHHHHHHHHhc---chhc
Q 014861 24 ITSSRNAKWWYSAFHNVTAMVGAGVLSLP----YA-MSH--LG-----WGPGIAVLIISWVVTLYTLWQMVEM---HEMV 88 (417)
Q Consensus 24 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP----~~-~~~--~G-----~~~gi~~~~~~~~~~~~s~~~l~~~---~~~~ 88 (417)
++++++-|.++-...+..+-+|+|++.-. .. +.+ .| .-.+.....+=+-+.-|+.+.+.-. ...+
T Consensus 90 ~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~y 169 (539)
T 4ain_A 90 IDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTF 169 (539)
T ss_dssp TTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Confidence 34567789999999999999999998432 21 111 01 1223333333333444444444331 1111
Q ss_pred CCcc-----cCcHHHHHHh-hcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCc-ccccchhhHHHHHH
Q 014861 89 PGKR-----FDRYHELGQG-AFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSC-KEIKTSYWIMIFAA 161 (417)
Q Consensus 89 ~~~~-----~~~y~~l~~~-~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~ 161 (417)
++++ ..=|+=++++ ..|+ .| .++|++..+........-+-....+++.-+++..+-. ........+++...
T Consensus 170 rk~~pl~iss~l~PllG~r~~~G~-~G-~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit 247 (539)
T 4ain_A 170 RVGRKQLLSSAFVPLIGEKGAEGW-LG-KLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLT 247 (539)
T ss_dssp CTCCCSCTTGGGHHHHHHHHTTSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHH
T ss_pred cCCCCCcHHHHhHhhcCCCccCCc-ch-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 1111 1225666666 6775 78 5788888776655455555555555555555554311 11222222333333
Q ss_pred HHHHHhhCCCC-chhHHHHHHHHHH
Q 014861 162 IHFVLSHLPNF-NSISVVSLAAAVM 185 (417)
Q Consensus 162 ~~~pl~~~~~~-~~l~~~s~~~~~~ 185 (417)
+++-++....+ |.+++.|-+.+..
T Consensus 248 ~i~~~Sa~sGl~kGIk~LS~~N~~L 272 (539)
T 4ain_A 248 LAFIFSAISGVGKGIQYLSNANMVL 272 (539)
T ss_dssp HHHHHHHHC---CCHHHHGGGHCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555555555 6677776665553
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=65.23 E-value=99 Score=30.04 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=79.9
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhchHH----HH-HHh--hC----h----hHHHHHHHHHHHHHHHHHHHHHh------c
Q 014861 26 SSRNAKWWYSAFHNVTAMVGAGVLSLP----YA-MSH--LG----W----GPGIAVLIISWVVTLYTLWQMVE------M 84 (417)
Q Consensus 26 ~~~~~s~~~~~~~l~~~~iG~GiL~lP----~~-~~~--~G----~----~~gi~~~~~~~~~~~~s~~~l~~------~ 84 (417)
++++-|.++-...+..+-+|.|++.-. .. +.+ .| - -.+.....+=+-+..++.+.+.- +
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 677788999999999999999987653 22 221 11 0 01122222212222222222221 1
Q ss_pred chhc--CC-cccCcHHHHH-HhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHH
Q 014861 85 HEMV--PG-KRFDRYHELG-QGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFA 160 (417)
Q Consensus 85 ~~~~--~~-~~~~~y~~l~-~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 160 (417)
.+++ |. -|..=|+-++ ++..|+ .| .++|+...+........-+-....+++.-+++..+-.........+++..
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~-~G-~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vi 244 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGL-FG-TVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCW 244 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCc-hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 1111 11 1122366667 778885 78 57787776655433333344444444444444332111111112222233
Q ss_pred HHHHHHhhCCCC-chhHHHHHHHHHHHHHH
Q 014861 161 AIHFVLSHLPNF-NSISVVSLAAAVMSLSY 189 (417)
Q Consensus 161 ~~~~pl~~~~~~-~~l~~~s~~~~~~~~~~ 189 (417)
.+++-.+....+ |..|+.|-+.+...+..
T Consensus 245 t~~~~~Sa~sGl~kGIk~LS~~N~~la~~L 274 (509)
T 2wsw_A 245 ILLNAICVAFGLQKGVKIASDVRTYLSFLM 274 (509)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555666667 77888888777654443
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=13.91 E-value=7.1e+02 Score=22.78 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=37.7
Q ss_pred cHHHHHHhhcCCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014861 95 RYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEV 142 (417)
Q Consensus 95 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 142 (417)
...+..+...|+ ++..++.+...+..+++..+.+...++.+..+.++
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 567788888886 66678888888888999999988888888877655
Done!