Query 014863
Match_columns 417
No_of_seqs 479 out of 1962
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0059 IlvC Ketol-acid reduct 100.0 1E-75 2.3E-80 572.2 26.5 292 101-416 10-307 (338)
2 PRK05225 ketol-acid reductoiso 100.0 3.5E-70 7.6E-75 560.5 25.0 312 71-416 1-330 (487)
3 PRK13403 ketol-acid reductoiso 100.0 5.5E-69 1.2E-73 534.5 27.8 284 104-411 10-299 (335)
4 PRK05479 ketol-acid reductoiso 100.0 6.9E-64 1.5E-68 501.5 28.6 288 105-415 12-305 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 3.3E-60 7.2E-65 473.1 29.0 280 108-410 1-285 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 1.2E-40 2.6E-45 302.6 15.0 160 108-287 2-162 (165)
7 COG0345 ProC Pyrroline-5-carbo 100.0 5.3E-35 1.2E-39 285.4 22.7 220 111-367 1-231 (266)
8 PRK12491 pyrroline-5-carboxyla 100.0 1.8E-33 4E-38 275.4 23.5 220 112-367 3-234 (272)
9 PRK06928 pyrroline-5-carboxyla 100.0 1.1E-30 2.4E-35 255.8 24.8 221 111-367 1-235 (277)
10 PTZ00431 pyrroline carboxylate 100.0 2.1E-29 4.6E-34 244.5 22.9 214 112-367 4-227 (260)
11 PRK07679 pyrroline-5-carboxyla 100.0 1.1E-27 2.3E-32 234.2 25.0 220 112-366 4-235 (279)
12 PRK07634 pyrroline-5-carboxyla 100.0 2.1E-27 4.5E-32 226.2 22.8 221 112-367 5-235 (245)
13 KOG3124 Pyrroline-5-carboxylat 100.0 2.9E-28 6.3E-33 234.5 16.2 220 112-367 1-232 (267)
14 PLN02688 pyrroline-5-carboxyla 100.0 8.5E-27 1.8E-31 225.1 26.3 220 112-367 1-231 (266)
15 PF01450 IlvC: Acetohydroxy ac 100.0 6.8E-29 1.5E-33 223.0 7.6 119 294-415 1-121 (145)
16 PRK07680 late competence prote 99.9 3E-26 6.6E-31 223.2 24.3 218 112-366 1-231 (273)
17 PRK11880 pyrroline-5-carboxyla 99.9 7.5E-26 1.6E-30 218.6 24.9 221 111-367 2-232 (267)
18 TIGR00112 proC pyrroline-5-car 99.9 2.6E-24 5.6E-29 207.5 19.8 198 141-367 10-214 (245)
19 PRK06476 pyrroline-5-carboxyla 99.9 1.1E-23 2.4E-28 203.4 23.9 216 112-367 1-224 (258)
20 PRK06545 prephenate dehydrogen 99.9 2E-20 4.2E-25 189.8 19.4 267 112-404 1-271 (359)
21 COG0287 TyrA Prephenate dehydr 99.8 3E-19 6.6E-24 176.2 20.3 261 112-405 4-272 (279)
22 PRK07417 arogenate dehydrogena 99.8 5.2E-18 1.1E-22 166.2 17.6 186 112-319 1-186 (279)
23 PRK08655 prephenate dehydrogen 99.8 3.5E-17 7.5E-22 170.5 23.7 199 112-339 1-203 (437)
24 PRK08507 prephenate dehydrogen 99.8 3.4E-17 7.3E-22 159.9 20.7 196 112-336 1-204 (275)
25 PRK07502 cyclohexadienyl dehyd 99.7 1.6E-16 3.5E-21 157.4 20.0 186 112-321 7-200 (307)
26 PRK05225 ketol-acid reductoiso 99.7 3.8E-18 8.2E-23 176.8 8.4 104 302-411 352-456 (487)
27 PRK14806 bifunctional cyclohex 99.7 2.3E-16 4.9E-21 173.1 20.2 222 112-365 4-240 (735)
28 PLN02256 arogenate dehydrogena 99.7 5.4E-16 1.2E-20 154.7 17.2 167 109-300 35-210 (304)
29 PF02153 PDH: Prephenate dehyd 99.7 3.9E-16 8.4E-21 151.8 14.8 193 126-336 1-195 (258)
30 PRK08818 prephenate dehydrogen 99.7 3.7E-15 8E-20 152.5 19.3 154 112-301 5-162 (370)
31 PRK06130 3-hydroxybutyryl-CoA 99.6 2.4E-14 5.2E-19 141.7 20.5 215 111-359 4-242 (311)
32 PRK11199 tyrA bifunctional cho 99.6 2.5E-14 5.4E-19 146.4 20.6 246 110-410 97-351 (374)
33 PRK12557 H(2)-dependent methyl 99.6 7.8E-14 1.7E-18 141.4 22.1 251 112-394 1-297 (342)
34 COG2084 MmsB 3-hydroxyisobutyr 99.6 1.4E-14 3.1E-19 143.3 12.5 146 112-287 1-157 (286)
35 PLN02712 arogenate dehydrogena 99.6 1.4E-13 2.9E-18 150.5 21.2 195 106-330 365-564 (667)
36 TIGR01724 hmd_rel H2-forming N 99.5 1.5E-12 3.2E-17 130.4 23.6 224 112-363 1-261 (341)
37 PRK05808 3-hydroxybutyryl-CoA 99.5 3.5E-13 7.5E-18 132.0 18.5 153 111-287 3-177 (282)
38 PLN02712 arogenate dehydrogena 99.5 2.1E-13 4.5E-18 149.0 16.6 166 112-301 53-227 (667)
39 PRK07531 bifunctional 3-hydrox 99.5 3.5E-12 7.6E-17 135.0 22.3 193 111-341 4-220 (495)
40 PF03807 F420_oxidored: NADP o 99.5 1.9E-13 4.1E-18 112.4 9.0 90 113-213 1-96 (96)
41 PF03446 NAD_binding_2: NAD bi 99.5 3.5E-13 7.7E-18 122.2 10.6 149 111-286 1-155 (163)
42 PLN02545 3-hydroxybutyryl-CoA 99.4 2.3E-12 5E-17 127.0 15.7 153 111-287 4-178 (295)
43 TIGR01915 npdG NADPH-dependent 99.4 3.6E-12 7.8E-17 120.8 16.5 156 112-287 1-183 (219)
44 PRK00094 gpsA NAD(P)H-dependen 99.4 3.4E-12 7.4E-17 126.0 16.9 150 111-287 1-173 (325)
45 TIGR00872 gnd_rel 6-phosphoglu 99.4 1.7E-11 3.7E-16 121.6 19.7 146 112-286 1-153 (298)
46 PRK12490 6-phosphogluconate de 99.4 1.5E-11 3.2E-16 121.9 18.2 198 112-339 1-210 (299)
47 PRK15461 NADH-dependent gamma- 99.4 1.9E-11 4.2E-16 121.0 18.8 200 111-340 1-208 (296)
48 PRK08293 3-hydroxybutyryl-CoA 99.4 5.9E-11 1.3E-15 116.8 21.6 213 111-362 3-247 (287)
49 PRK06129 3-hydroxyacyl-CoA deh 99.4 7.9E-11 1.7E-15 117.1 21.1 195 111-339 2-220 (308)
50 PRK09260 3-hydroxybutyryl-CoA 99.4 6.5E-11 1.4E-15 116.4 20.1 149 111-287 1-176 (288)
51 PRK15059 tartronate semialdehy 99.4 2.6E-11 5.5E-16 120.3 17.2 195 112-337 1-203 (292)
52 PRK06035 3-hydroxyacyl-CoA deh 99.3 4.9E-11 1.1E-15 117.5 16.3 152 111-287 3-180 (291)
53 TIGR01505 tartro_sem_red 2-hyd 99.3 6.5E-11 1.4E-15 116.3 17.2 193 113-339 1-205 (291)
54 PRK14618 NAD(P)H-dependent gly 99.3 1.6E-11 3.4E-16 122.8 12.8 194 111-338 4-238 (328)
55 PRK09599 6-phosphogluconate de 99.3 3.4E-11 7.3E-16 119.4 14.9 198 112-339 1-211 (301)
56 PLN02350 phosphogluconate dehy 99.3 5.8E-11 1.3E-15 125.8 16.8 153 111-287 6-168 (493)
57 PRK12439 NAD(P)H-dependent gly 99.3 1.3E-10 2.9E-15 117.4 18.4 229 111-375 7-268 (341)
58 PRK11559 garR tartronate semia 99.3 2.1E-10 4.5E-15 112.8 19.1 198 111-338 2-207 (296)
59 TIGR01692 HIBADH 3-hydroxyisob 99.3 2.1E-10 4.5E-15 113.0 17.3 193 116-338 1-201 (288)
60 PTZ00142 6-phosphogluconate de 99.3 3E-10 6.5E-15 119.9 19.1 151 111-287 1-162 (470)
61 PRK07530 3-hydroxybutyryl-CoA 99.3 2.2E-10 4.7E-15 112.9 16.8 152 111-287 4-178 (292)
62 TIGR00873 gnd 6-phosphoglucona 99.2 2E-10 4.2E-15 121.2 17.3 146 113-287 1-159 (467)
63 PF10727 Rossmann-like: Rossma 99.2 1.7E-11 3.6E-16 108.3 7.4 114 112-237 11-127 (127)
64 COG2085 Predicted dinucleotide 99.2 2.2E-10 4.8E-15 108.8 14.1 155 111-287 1-174 (211)
65 PRK07066 3-hydroxybutyryl-CoA 99.2 7.8E-10 1.7E-14 111.5 18.3 153 111-287 7-178 (321)
66 PTZ00345 glycerol-3-phosphate 99.1 5.9E-09 1.3E-13 106.9 21.1 253 112-398 12-313 (365)
67 TIGR03026 NDP-sugDHase nucleot 99.1 3E-09 6.6E-14 109.9 18.4 201 112-337 1-242 (411)
68 PLN02858 fructose-bisphosphate 99.1 5.3E-10 1.2E-14 130.7 14.2 199 112-340 5-214 (1378)
69 PRK08268 3-hydroxy-acyl-CoA de 99.1 3.1E-09 6.7E-14 113.2 18.1 209 110-359 6-245 (507)
70 PLN02858 fructose-bisphosphate 99.1 2.4E-09 5.2E-14 125.3 18.3 203 111-340 324-534 (1378)
71 PRK14619 NAD(P)H-dependent gly 99.1 1.1E-08 2.3E-13 101.9 19.6 79 109-212 3-82 (308)
72 PF02826 2-Hacid_dh_C: D-isome 99.1 5.4E-10 1.2E-14 102.9 8.7 106 93-211 17-126 (178)
73 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 1.1E-09 2.4E-14 98.9 10.4 121 113-243 1-139 (157)
74 PRK13243 glyoxylate reductase; 99.0 9.1E-10 2E-14 111.3 10.5 150 92-268 124-290 (333)
75 PRK06522 2-dehydropantoate 2-r 99.0 9.9E-09 2.1E-13 100.3 17.2 96 112-215 1-104 (304)
76 PRK14620 NAD(P)H-dependent gly 99.0 2.2E-08 4.9E-13 100.0 20.0 97 112-215 1-110 (326)
77 PRK11064 wecC UDP-N-acetyl-D-m 99.0 2E-08 4.3E-13 104.4 20.1 203 111-337 3-246 (415)
78 PRK07819 3-hydroxybutyryl-CoA 99.0 2.1E-08 4.6E-13 99.2 19.3 216 111-363 5-249 (286)
79 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.0 1.2E-08 2.6E-13 108.6 18.6 152 111-287 5-179 (503)
80 KOG2380 Prephenate dehydrogena 99.0 8.9E-09 1.9E-13 103.7 16.3 164 112-300 53-226 (480)
81 PRK07574 formate dehydrogenase 99.0 1.9E-09 4.2E-14 111.2 10.9 160 92-275 171-343 (385)
82 KOG0409 Predicted dehydrogenas 99.0 1.1E-09 2.4E-14 108.8 8.5 93 112-215 36-133 (327)
83 PLN03139 formate dehydrogenase 99.0 2.3E-09 5.1E-14 110.6 10.9 108 93-212 179-291 (386)
84 COG0240 GpsA Glycerol-3-phosph 99.0 3.3E-08 7.1E-13 99.8 18.5 232 111-375 1-262 (329)
85 PRK06444 prephenate dehydrogen 99.0 3.9E-09 8.4E-14 99.7 10.7 129 112-303 1-130 (197)
86 COG0111 SerA Phosphoglycerate 99.0 1.9E-09 4.1E-14 108.9 8.7 151 93-268 124-284 (324)
87 PRK12480 D-lactate dehydrogena 98.9 4.6E-09 1E-13 106.2 11.2 94 105-214 141-237 (330)
88 TIGR03376 glycerol3P_DH glycer 98.9 9.8E-08 2.1E-12 97.2 20.4 230 113-376 1-279 (342)
89 COG1052 LdhA Lactate dehydroge 98.9 5E-09 1.1E-13 105.9 10.7 136 89-239 120-269 (324)
90 PRK08605 D-lactate dehydrogena 98.9 3.7E-09 8.1E-14 106.8 9.8 104 94-212 128-236 (332)
91 COG4007 Predicted dehydrogenas 98.9 4.7E-08 1E-12 95.5 16.7 225 111-363 1-262 (340)
92 PRK06436 glycerate dehydrogena 98.9 4E-09 8.7E-14 105.6 9.7 103 92-212 105-209 (303)
93 PRK15409 bifunctional glyoxyla 98.9 6E-09 1.3E-13 105.2 10.5 158 91-274 122-294 (323)
94 PRK11861 bifunctional prephena 98.9 1.1E-08 2.3E-13 112.4 12.8 136 182-325 1-137 (673)
95 PRK15469 ghrA bifunctional gly 98.9 5.3E-09 1.2E-13 105.0 9.3 105 93-212 120-226 (312)
96 TIGR01327 PGDH D-3-phosphoglyc 98.9 6.5E-09 1.4E-13 111.1 10.5 108 92-212 119-229 (525)
97 PRK08229 2-dehydropantoate 2-r 98.9 2.7E-08 5.9E-13 99.5 14.3 96 111-215 2-111 (341)
98 PRK13581 D-3-phosphoglycerate 98.9 6.8E-09 1.5E-13 111.0 9.9 106 93-212 122-230 (526)
99 PRK12921 2-dehydropantoate 2-r 98.9 9.8E-08 2.1E-12 93.7 16.9 96 112-215 1-106 (305)
100 PF02737 3HCDH_N: 3-hydroxyacy 98.8 8.7E-08 1.9E-12 88.9 15.1 150 113-287 1-173 (180)
101 PLN02928 oxidoreductase family 98.8 1.1E-08 2.4E-13 104.1 9.8 165 92-276 142-322 (347)
102 PF14748 P5CR_dimer: Pyrroline 98.8 8.3E-09 1.8E-13 88.4 7.3 67 300-367 3-75 (107)
103 PRK08410 2-hydroxyacid dehydro 98.8 1.2E-08 2.6E-13 102.3 9.4 159 92-277 120-295 (311)
104 PRK06932 glycerate dehydrogena 98.7 9.5E-08 2.1E-12 96.1 12.7 160 93-278 123-299 (314)
105 KOG0069 Glyoxylate/hydroxypyru 98.7 4.3E-08 9.4E-13 99.3 10.2 140 86-240 136-287 (336)
106 PRK11790 D-3-phosphoglycerate 98.7 4.2E-08 9E-13 102.0 9.8 104 93-212 133-239 (409)
107 PRK06487 glycerate dehydrogena 98.7 4.6E-08 9.9E-13 98.4 9.4 128 92-239 123-266 (317)
108 PRK11730 fadB multifunctional 98.7 1.5E-06 3.1E-11 96.4 21.6 214 109-359 311-550 (715)
109 TIGR02441 fa_ox_alpha_mit fatt 98.7 7.6E-07 1.7E-11 98.9 18.1 212 109-357 333-569 (737)
110 cd01065 NAD_bind_Shikimate_DH 98.7 2.6E-08 5.6E-13 88.2 5.1 100 108-214 17-118 (155)
111 KOG0068 D-3-phosphoglycerate d 98.7 2.7E-07 5.8E-12 93.2 12.5 175 88-286 123-313 (406)
112 PRK15182 Vi polysaccharide bio 98.6 9.4E-07 2E-11 92.4 17.1 202 112-337 7-242 (425)
113 TIGR02437 FadB fatty oxidation 98.6 7.7E-07 1.7E-11 98.6 17.3 213 109-358 311-549 (714)
114 TIGR02853 spore_dpaA dipicolin 98.6 2.2E-07 4.7E-12 92.4 11.6 94 106-212 147-240 (287)
115 PRK06249 2-dehydropantoate 2-r 98.6 2.2E-06 4.8E-11 85.5 18.3 154 112-288 6-181 (313)
116 TIGR02440 FadJ fatty oxidation 98.6 3.4E-06 7.4E-11 93.3 21.1 212 110-360 303-542 (699)
117 PRK09287 6-phosphogluconate de 98.6 1.6E-06 3.4E-11 91.6 17.0 139 122-287 1-150 (459)
118 COG1250 FadB 3-hydroxyacyl-CoA 98.6 2.8E-06 6.2E-11 85.4 17.8 151 111-286 3-176 (307)
119 PRK11154 fadJ multifunctional 98.6 2.4E-06 5.1E-11 94.7 18.8 153 110-287 308-484 (708)
120 PRK15438 erythronate-4-phospha 98.6 1.1E-07 2.5E-12 97.9 7.9 151 106-287 112-281 (378)
121 PRK00257 erythronate-4-phospha 98.5 1.6E-07 3.4E-12 97.0 7.6 151 106-287 112-281 (381)
122 PLN02306 hydroxypyruvate reduc 98.5 5E-07 1.1E-11 93.5 10.7 142 106-267 161-321 (386)
123 PF00670 AdoHcyase_NAD: S-aden 98.5 4.2E-07 9.1E-12 83.6 8.3 95 106-215 19-113 (162)
124 COG1023 Gnd Predicted 6-phosph 98.5 2.3E-06 4.9E-11 83.3 13.2 149 112-286 1-154 (300)
125 PRK00961 H(2)-dependent methyl 98.5 1.1E-05 2.4E-10 79.7 17.9 174 159-363 126-310 (342)
126 PRK15057 UDP-glucose 6-dehydro 98.5 3.4E-06 7.5E-11 87.2 15.1 92 112-214 1-119 (388)
127 TIGR01723 hmd_TIGR 5,10-methen 98.4 1.7E-05 3.6E-10 78.6 18.3 174 159-363 124-308 (340)
128 PTZ00075 Adenosylhomocysteinas 98.4 9.4E-07 2E-11 93.4 9.9 129 90-243 241-371 (476)
129 PRK13304 L-aspartate dehydroge 98.4 1.9E-06 4.1E-11 84.6 10.0 92 111-213 1-94 (265)
130 PRK08269 3-hydroxybutyryl-CoA 98.3 4.5E-05 9.6E-10 76.9 19.2 206 122-361 1-243 (314)
131 COG0362 Gnd 6-phosphogluconate 98.3 1.1E-05 2.4E-10 83.2 14.9 189 112-334 4-215 (473)
132 PLN02353 probable UDP-glucose 98.3 1.1E-05 2.5E-10 85.5 15.6 198 111-336 1-249 (473)
133 PF03721 UDPG_MGDP_dh_N: UDP-g 98.3 1.8E-06 3.9E-11 80.7 8.4 93 112-212 1-120 (185)
134 TIGR00936 ahcY adenosylhomocys 98.3 5.1E-06 1.1E-10 86.5 10.9 93 107-215 192-285 (406)
135 PRK08306 dipicolinate synthase 98.3 4.7E-06 1E-10 83.2 10.1 94 106-212 148-241 (296)
136 PRK13302 putative L-aspartate 98.3 4.9E-06 1.1E-10 82.1 10.1 92 112-213 7-100 (271)
137 PRK05476 S-adenosyl-L-homocyst 98.2 6.5E-06 1.4E-10 86.3 10.7 93 107-215 209-302 (425)
138 PRK14194 bifunctional 5,10-met 98.2 5.1E-06 1.1E-10 83.4 8.7 75 106-212 155-231 (301)
139 PF01408 GFO_IDH_MocA: Oxidore 98.2 1.6E-05 3.5E-10 67.2 9.9 81 112-200 1-84 (120)
140 PLN02494 adenosylhomocysteinas 98.2 1E-05 2.2E-10 85.6 10.4 92 107-214 251-343 (477)
141 COG1893 ApbA Ketopantoate redu 98.1 0.00011 2.3E-09 74.0 16.9 154 112-287 1-170 (307)
142 cd00401 AdoHcyase S-adenosyl-L 98.1 1.6E-05 3.6E-10 83.0 11.1 92 107-214 199-291 (413)
143 PF02558 ApbA: Ketopantoate re 98.1 1.3E-05 2.8E-10 70.8 8.7 100 114-221 1-112 (151)
144 cd05213 NAD_bind_Glutamyl_tRNA 98.1 1.2E-05 2.6E-10 80.6 9.4 96 108-212 176-273 (311)
145 smart00859 Semialdhyde_dh Semi 98.0 2.2E-05 4.8E-10 67.5 7.7 97 113-214 1-101 (122)
146 PRK06141 ornithine cyclodeamin 98.0 1.9E-05 4.2E-10 79.3 7.5 85 112-209 126-216 (314)
147 COG4074 Mth H2-forming N5,N10- 97.9 0.00049 1.1E-08 66.6 16.5 179 158-363 123-308 (343)
148 PRK05708 2-dehydropantoate 2-r 97.9 9.2E-05 2E-09 73.9 11.6 98 112-216 3-109 (305)
149 PRK14188 bifunctional 5,10-met 97.9 3.5E-05 7.6E-10 77.3 8.5 75 107-212 155-230 (296)
150 TIGR02371 ala_DH_arch alanine 97.9 3.7E-05 8E-10 77.7 7.9 94 112-215 129-225 (325)
151 PF01488 Shikimate_DH: Shikima 97.9 2.2E-05 4.9E-10 69.3 5.4 97 106-212 8-109 (135)
152 PRK00048 dihydrodipicolinate r 97.9 0.00019 4.1E-09 70.2 12.3 96 111-218 1-98 (257)
153 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 4.5E-05 9.8E-10 72.0 7.7 72 105-188 23-95 (200)
154 PRK14179 bifunctional 5,10-met 97.8 6.8E-05 1.5E-09 74.8 8.1 74 107-212 155-230 (284)
155 PRK00045 hemA glutamyl-tRNA re 97.8 4.3E-05 9.4E-10 79.7 7.0 75 107-190 179-254 (423)
156 PRK13303 L-aspartate dehydroge 97.7 0.0002 4.3E-09 70.4 10.4 91 111-213 1-94 (265)
157 PRK06223 malate dehydrogenase; 97.7 0.00043 9.3E-09 68.8 12.4 98 111-215 2-123 (307)
158 PRK07340 ornithine cyclodeamin 97.7 0.00012 2.5E-09 73.5 7.8 91 112-215 126-220 (304)
159 KOG2304 3-hydroxyacyl-CoA dehy 97.7 0.00035 7.7E-09 67.8 10.5 153 111-287 11-191 (298)
160 TIGR01035 hemA glutamyl-tRNA r 97.6 0.0001 2.3E-09 76.9 6.8 75 107-190 177-252 (417)
161 TIGR00036 dapB dihydrodipicoli 97.6 0.00053 1.2E-08 67.5 10.8 163 111-286 1-181 (266)
162 PLN00203 glutamyl-tRNA reducta 97.5 0.00032 6.9E-09 75.5 9.3 85 108-199 264-353 (519)
163 COG0677 WecC UDP-N-acetyl-D-ma 97.5 0.0017 3.7E-08 67.4 13.3 151 112-287 10-201 (436)
164 PRK07589 ornithine cyclodeamin 97.5 0.00025 5.5E-09 72.6 7.4 95 112-215 130-228 (346)
165 TIGR01921 DAP-DH diaminopimela 97.5 0.00031 6.7E-09 71.4 7.6 74 112-195 4-77 (324)
166 PRK04207 glyceraldehyde-3-phos 97.4 0.00071 1.5E-08 69.0 9.8 96 111-214 1-111 (341)
167 PF01118 Semialdhyde_dh: Semia 97.4 0.0004 8.6E-09 60.0 6.9 92 113-214 1-99 (121)
168 COG2423 Predicted ornithine cy 97.4 0.00048 1E-08 70.2 8.5 95 110-214 129-227 (330)
169 PF01113 DapB_N: Dihydrodipico 97.4 0.00058 1.3E-08 59.6 7.9 94 112-217 1-104 (124)
170 PRK08618 ornithine cyclodeamin 97.4 0.00044 9.6E-09 69.8 8.1 92 112-215 128-224 (325)
171 PRK06407 ornithine cyclodeamin 97.4 0.00035 7.6E-09 70.1 7.2 93 112-215 118-215 (301)
172 cd01078 NAD_bind_H4MPT_DH NADP 97.4 0.00034 7.4E-09 64.9 6.5 97 107-212 25-129 (194)
173 TIGR02992 ectoine_eutC ectoine 97.4 0.00038 8.2E-09 70.4 7.2 90 112-212 130-224 (326)
174 TIGR01763 MalateDH_bact malate 97.4 0.0011 2.4E-08 66.5 10.4 66 112-187 2-78 (305)
175 COG0673 MviM Predicted dehydro 97.4 0.00062 1.3E-08 67.5 8.3 85 112-208 4-94 (342)
176 PRK13940 glutamyl-tRNA reducta 97.4 0.00033 7.2E-09 73.3 6.6 75 106-189 177-253 (414)
177 COG1712 Predicted dinucleotide 97.4 0.0011 2.4E-08 64.2 9.6 92 112-214 1-94 (255)
178 PRK06046 alanine dehydrogenase 97.3 0.00053 1.1E-08 69.3 7.6 91 112-214 130-225 (326)
179 PRK12549 shikimate 5-dehydroge 97.3 0.0005 1.1E-08 68.3 7.2 75 107-190 124-204 (284)
180 COG0499 SAM1 S-adenosylhomocys 97.3 0.00049 1.1E-08 70.6 7.0 94 106-215 205-299 (420)
181 TIGR00518 alaDH alanine dehydr 97.3 0.00062 1.3E-08 70.2 7.7 98 108-212 165-267 (370)
182 TIGR03215 ac_ald_DH_ac acetald 97.3 0.0017 3.6E-08 65.0 10.5 91 112-213 2-96 (285)
183 PF02423 OCD_Mu_crystall: Orni 97.3 0.00027 5.9E-09 71.1 4.6 94 112-214 129-226 (313)
184 PRK08300 acetaldehyde dehydrog 97.3 0.0016 3.4E-08 65.7 10.0 91 112-213 5-102 (302)
185 TIGR00507 aroE shikimate 5-deh 97.2 0.00044 9.6E-09 67.7 5.7 93 108-211 115-213 (270)
186 PRK06823 ornithine cyclodeamin 97.2 0.00078 1.7E-08 68.1 7.6 94 111-215 128-225 (315)
187 COG5495 Uncharacterized conser 97.2 0.0038 8.2E-08 60.9 11.6 220 112-363 11-237 (289)
188 COG0373 HemA Glutamyl-tRNA red 97.2 0.0007 1.5E-08 70.8 6.7 73 106-187 174-247 (414)
189 cd01080 NAD_bind_m-THF_DH_Cycl 97.2 0.001 2.3E-08 61.4 7.1 76 106-212 40-116 (168)
190 PTZ00117 malate dehydrogenase; 97.2 0.0035 7.5E-08 63.3 11.4 69 108-186 3-81 (319)
191 COG1004 Ugd Predicted UDP-gluc 97.2 0.0017 3.6E-08 67.5 9.1 90 112-209 1-117 (414)
192 cd05291 HicDH_like L-2-hydroxy 97.2 0.0021 4.6E-08 64.2 9.7 67 112-188 1-78 (306)
193 PRK00258 aroE shikimate 5-dehy 97.2 0.00057 1.2E-08 67.4 5.6 77 107-191 120-198 (278)
194 KOG2711 Glycerol-3-phosphate d 97.1 0.0029 6.3E-08 64.5 10.3 105 112-216 22-144 (372)
195 KOG2653 6-phosphogluconate deh 97.1 0.00065 1.4E-08 69.6 5.5 192 112-334 7-219 (487)
196 PRK00436 argC N-acetyl-gamma-g 97.1 0.0021 4.6E-08 65.5 9.3 95 111-213 2-100 (343)
197 PF13380 CoA_binding_2: CoA bi 97.1 0.0031 6.8E-08 54.6 8.8 86 112-214 1-90 (116)
198 cd05311 NAD_bind_2_malic_enz N 97.1 0.0024 5.3E-08 61.5 8.9 92 106-210 21-126 (226)
199 TIGR00745 apbA_panE 2-dehydrop 97.1 0.012 2.5E-07 57.3 13.7 86 121-215 1-97 (293)
200 PTZ00082 L-lactate dehydrogena 97.1 0.0049 1.1E-07 62.4 11.4 66 112-186 7-82 (321)
201 PRK14175 bifunctional 5,10-met 97.1 0.0016 3.4E-08 65.2 7.4 75 107-212 155-230 (286)
202 COG1748 LYS9 Saccharopine dehy 97.0 0.0019 4.2E-08 67.1 8.3 79 111-196 1-86 (389)
203 PRK14189 bifunctional 5,10-met 97.0 0.0013 2.9E-08 65.7 6.9 75 107-212 155-230 (285)
204 cd05292 LDH_2 A subgroup of L- 97.0 0.0036 7.8E-08 62.8 9.5 70 112-188 1-77 (308)
205 PF00056 Ldh_1_N: lactate/mala 97.0 0.0038 8.3E-08 55.8 8.4 68 112-187 1-78 (141)
206 PRK08291 ectoine utilization p 97.0 0.002 4.3E-08 65.2 7.3 88 112-210 133-225 (330)
207 PRK09310 aroDE bifunctional 3- 97.0 0.0018 3.9E-08 68.9 7.4 74 107-190 329-402 (477)
208 PRK13301 putative L-aspartate 97.0 0.0049 1.1E-07 61.1 9.8 91 112-213 3-95 (267)
209 PF02254 TrkA_N: TrkA-N domain 97.0 0.0098 2.1E-07 50.0 10.5 93 114-213 1-98 (116)
210 PF02629 CoA_binding: CoA bind 96.9 0.0019 4.1E-08 53.8 5.9 89 112-212 4-95 (96)
211 PRK06199 ornithine cyclodeamin 96.9 0.0028 6.1E-08 65.7 8.0 91 110-210 154-257 (379)
212 COG0569 TrkA K+ transport syst 96.9 0.0062 1.4E-07 58.6 9.7 82 112-199 1-87 (225)
213 cd05191 NAD_bind_amino_acid_DH 96.9 0.0046 1E-07 50.3 7.5 66 106-211 19-85 (86)
214 PRK06718 precorrin-2 dehydroge 96.8 0.0057 1.2E-07 57.9 8.9 85 106-199 6-91 (202)
215 COG2344 AT-rich DNA-binding pr 96.8 0.006 1.3E-07 57.8 8.6 106 112-236 85-194 (211)
216 PRK09496 trkA potassium transp 96.8 0.0081 1.8E-07 62.3 10.4 79 112-197 1-84 (453)
217 PRK11579 putative oxidoreducta 96.8 0.0064 1.4E-07 61.4 9.4 77 112-199 5-85 (346)
218 PRK10206 putative oxidoreducta 96.8 0.0055 1.2E-07 62.3 8.7 82 111-199 1-85 (344)
219 KOG1370 S-adenosylhomocysteine 96.8 0.0056 1.2E-07 61.9 8.4 137 60-215 168-304 (434)
220 PRK14192 bifunctional 5,10-met 96.7 0.0039 8.4E-08 62.3 7.3 76 106-212 155-231 (283)
221 cd01339 LDH-like_MDH L-lactate 96.7 0.0071 1.5E-07 60.2 9.1 64 114-186 1-74 (300)
222 TIGR01850 argC N-acetyl-gamma- 96.7 0.0081 1.7E-07 61.4 9.4 94 112-213 1-100 (346)
223 TIGR01809 Shik-DH-AROM shikima 96.7 0.0038 8.1E-08 62.0 6.6 77 107-190 122-202 (282)
224 TIGR02717 AcCoA-syn-alpha acet 96.7 0.0056 1.2E-07 64.6 8.2 87 112-215 8-100 (447)
225 TIGR00561 pntA NAD(P) transhyd 96.6 0.0077 1.7E-07 64.8 8.8 94 112-212 165-284 (511)
226 PRK00066 ldh L-lactate dehydro 96.5 0.017 3.7E-07 58.3 10.2 68 109-187 5-82 (315)
227 PRK10792 bifunctional 5,10-met 96.5 0.0097 2.1E-07 59.6 8.1 76 106-212 155-231 (285)
228 PTZ00187 succinyl-CoA syntheta 96.4 0.019 4E-07 58.4 9.7 119 112-244 30-153 (317)
229 PLN02819 lysine-ketoglutarate 96.4 0.0072 1.6E-07 69.9 7.5 87 109-198 567-668 (1042)
230 PRK14982 acyl-ACP reductase; P 96.4 0.0073 1.6E-07 61.9 6.6 94 106-212 151-246 (340)
231 PF13460 NAD_binding_10: NADH( 96.4 0.033 7.2E-07 50.0 10.2 66 114-188 1-70 (183)
232 cd05297 GH4_alpha_glucosidase_ 96.3 0.007 1.5E-07 63.5 6.4 81 112-195 1-91 (423)
233 PRK06719 precorrin-2 dehydroge 96.3 0.013 2.8E-07 53.5 7.3 87 101-200 5-92 (157)
234 KOG2305 3-hydroxyacyl-CoA dehy 96.3 0.11 2.4E-06 51.0 13.8 206 112-343 4-239 (313)
235 PRK09424 pntA NAD(P) transhydr 96.3 0.014 3.1E-07 62.8 8.6 97 108-212 163-285 (509)
236 cd05212 NAD_bind_m-THF_DH_Cycl 96.3 0.016 3.4E-07 52.3 7.3 75 106-211 24-99 (140)
237 PRK05472 redox-sensing transcr 96.2 0.0062 1.4E-07 57.8 5.0 81 112-199 85-167 (213)
238 PRK04148 hypothetical protein; 96.2 0.049 1.1E-06 48.9 10.4 92 109-209 16-108 (134)
239 PF13241 NAD_binding_7: Putati 96.2 0.023 4.9E-07 48.0 7.7 76 107-197 4-79 (103)
240 COG0686 Ald Alanine dehydrogen 96.2 0.01 2.2E-07 60.2 6.4 95 112-212 169-268 (371)
241 PRK05678 succinyl-CoA syntheta 96.2 0.025 5.5E-07 56.8 9.2 92 112-217 9-103 (291)
242 TIGR01019 sucCoAalpha succinyl 96.1 0.022 4.7E-07 57.1 8.5 91 112-216 7-100 (286)
243 COG0169 AroE Shikimate 5-dehyd 96.1 0.011 2.3E-07 59.2 6.3 96 106-211 122-225 (283)
244 cd00650 LDH_MDH_like NAD-depen 96.1 0.03 6.6E-07 54.6 9.3 65 114-186 1-78 (263)
245 PF02882 THF_DHG_CYH_C: Tetrah 96.1 0.026 5.7E-07 52.0 8.1 75 107-212 33-108 (160)
246 PF05368 NmrA: NmrA-like famil 96.1 0.044 9.5E-07 51.6 9.8 69 114-188 1-74 (233)
247 TIGR02354 thiF_fam2 thiamine b 96.1 0.043 9.4E-07 52.0 9.7 102 105-214 16-146 (200)
248 PTZ00325 malate dehydrogenase; 96.0 0.041 8.9E-07 56.0 10.1 76 105-187 3-85 (321)
249 cd01079 NAD_bind_m-THF_DH NAD 96.0 0.017 3.7E-07 54.9 6.7 93 106-213 58-157 (197)
250 PRK03659 glutathione-regulated 95.9 0.041 8.8E-07 60.3 10.3 82 112-200 401-487 (601)
251 PRK10669 putative cation:proto 95.9 0.04 8.8E-07 59.5 10.1 74 112-192 418-495 (558)
252 PF03435 Saccharop_dh: Sacchar 95.9 0.025 5.4E-07 57.9 8.1 78 114-197 1-86 (386)
253 PRK14191 bifunctional 5,10-met 95.9 0.019 4.2E-07 57.5 7.0 76 106-212 153-229 (285)
254 PRK09496 trkA potassium transp 95.9 0.069 1.5E-06 55.4 11.2 93 112-211 232-330 (453)
255 TIGR01546 GAPDH-II_archae glyc 95.8 0.037 8.1E-07 56.6 8.6 77 114-195 1-92 (333)
256 TIGR02356 adenyl_thiF thiazole 95.8 0.038 8.3E-07 52.2 8.1 88 105-199 16-132 (202)
257 cd05293 LDH_1 A subgroup of L- 95.8 0.033 7E-07 56.3 7.9 68 112-186 4-79 (312)
258 PRK14178 bifunctional 5,10-met 95.8 0.029 6.4E-07 56.0 7.5 76 106-212 148-224 (279)
259 PRK00683 murD UDP-N-acetylmura 95.8 0.028 6E-07 58.5 7.6 67 112-189 4-70 (418)
260 PRK14176 bifunctional 5,10-met 95.7 0.041 8.8E-07 55.3 8.4 76 106-212 160-236 (287)
261 PRK12749 quinate/shikimate deh 95.7 0.021 4.6E-07 57.0 6.4 78 107-191 121-209 (288)
262 cd05211 NAD_bind_Glu_Leu_Phe_V 95.7 0.03 6.5E-07 53.8 7.1 79 106-191 19-110 (217)
263 PF01262 AlaDh_PNT_C: Alanine 95.6 0.035 7.5E-07 50.7 7.0 100 105-212 15-139 (168)
264 TIGR01470 cysG_Nterm siroheme 95.6 0.094 2E-06 49.9 9.9 83 107-198 6-90 (205)
265 PRK05442 malate dehydrogenase; 95.5 0.1 2.3E-06 53.1 10.6 68 110-187 3-89 (326)
266 PRK12548 shikimate 5-dehydroge 95.5 0.037 8E-07 55.1 7.0 78 107-191 123-212 (289)
267 cd01338 MDH_choloroplast_like 95.5 0.045 9.7E-07 55.6 7.7 66 112-187 3-87 (322)
268 PLN02602 lactate dehydrogenase 95.5 0.11 2.4E-06 53.4 10.6 66 112-186 38-113 (350)
269 PRK14183 bifunctional 5,10-met 95.4 0.046 1E-06 54.7 7.5 75 107-212 154-229 (281)
270 cd05294 LDH-like_MDH_nadp A la 95.4 0.074 1.6E-06 53.5 9.0 67 112-187 1-81 (309)
271 TIGR01851 argC_other N-acetyl- 95.4 0.38 8.2E-06 48.9 14.0 157 112-321 2-159 (310)
272 PRK03562 glutathione-regulated 95.4 0.09 2E-06 57.9 10.2 75 112-193 401-479 (621)
273 PRK00421 murC UDP-N-acetylmura 95.3 0.052 1.1E-06 57.1 7.9 71 106-186 3-74 (461)
274 TIGR01761 thiaz-red thiazoliny 95.3 0.075 1.6E-06 54.5 8.8 86 112-209 4-94 (343)
275 PRK14173 bifunctional 5,10-met 95.2 0.06 1.3E-06 54.1 7.5 75 107-212 152-227 (287)
276 PRK12475 thiamine/molybdopteri 95.2 0.12 2.6E-06 52.8 9.8 89 105-200 19-138 (338)
277 PRK14186 bifunctional 5,10-met 95.1 0.064 1.4E-06 54.1 7.5 75 107-212 155-230 (297)
278 cd01076 NAD_bind_1_Glu_DH NAD( 95.1 0.048 1E-06 52.7 6.3 32 106-144 27-58 (227)
279 TIGR01759 MalateDH-SF1 malate 95.1 0.17 3.7E-06 51.5 10.6 66 112-187 4-88 (323)
280 COG1064 AdhP Zn-dependent alco 95.1 0.14 3E-06 52.7 9.8 92 108-211 165-258 (339)
281 PRK14170 bifunctional 5,10-met 95.1 0.088 1.9E-06 52.8 8.2 75 107-212 154-229 (284)
282 PRK06270 homoserine dehydrogen 95.0 0.072 1.6E-06 54.3 7.7 99 112-210 3-123 (341)
283 cd00300 LDH_like L-lactate deh 95.0 0.087 1.9E-06 52.7 8.1 67 114-187 1-75 (300)
284 PRK14169 bifunctional 5,10-met 95.0 0.091 2E-06 52.7 8.2 75 107-212 153-228 (282)
285 PRK14177 bifunctional 5,10-met 95.0 0.076 1.7E-06 53.3 7.6 75 107-212 156-231 (284)
286 PRK14172 bifunctional 5,10-met 95.0 0.093 2E-06 52.5 8.2 75 107-212 155-230 (278)
287 PF03720 UDPG_MGDP_dh_C: UDP-g 95.0 0.1 2.3E-06 44.2 7.4 83 121-214 17-103 (106)
288 PLN02516 methylenetetrahydrofo 95.0 0.071 1.5E-06 53.9 7.3 75 107-212 164-239 (299)
289 COG0190 FolD 5,10-methylene-te 94.9 0.081 1.7E-06 53.0 7.3 76 106-212 152-228 (283)
290 PRK14171 bifunctional 5,10-met 94.9 0.1 2.2E-06 52.4 8.1 75 107-212 156-231 (288)
291 PRK14180 bifunctional 5,10-met 94.8 0.11 2.4E-06 52.1 8.2 76 106-212 154-230 (282)
292 PRK01710 murD UDP-N-acetylmura 94.8 0.071 1.5E-06 56.1 7.0 72 105-185 9-84 (458)
293 PLN00112 malate dehydrogenase 94.8 0.34 7.4E-06 51.5 12.0 72 112-187 101-185 (444)
294 PRK14190 bifunctional 5,10-met 94.8 0.095 2.1E-06 52.6 7.5 75 107-212 155-230 (284)
295 cd01336 MDH_cytoplasmic_cytoso 94.7 0.1 2.3E-06 53.0 7.9 75 112-186 3-86 (325)
296 PF03059 NAS: Nicotianamine sy 94.7 0.22 4.7E-06 49.8 10.0 123 112-240 122-261 (276)
297 cd05290 LDH_3 A subgroup of L- 94.7 0.078 1.7E-06 53.5 6.9 68 113-187 1-77 (307)
298 PRK14166 bifunctional 5,10-met 94.7 0.12 2.6E-06 51.9 8.1 75 107-212 154-229 (282)
299 PRK00141 murD UDP-N-acetylmura 94.7 0.086 1.9E-06 55.9 7.5 70 106-185 11-81 (473)
300 COG0039 Mdh Malate/lactate deh 94.7 0.24 5.2E-06 50.4 10.2 71 112-186 1-77 (313)
301 PRK11863 N-acetyl-gamma-glutam 94.7 0.74 1.6E-05 46.9 13.7 154 112-319 3-158 (313)
302 PRK14187 bifunctional 5,10-met 94.7 0.12 2.7E-06 52.0 8.1 75 107-212 157-232 (294)
303 PRK00676 hemA glutamyl-tRNA re 94.6 0.087 1.9E-06 54.1 7.1 64 106-186 170-234 (338)
304 PRK15076 alpha-galactosidase; 94.6 0.08 1.7E-06 55.9 6.9 74 111-189 1-86 (431)
305 cd08230 glucose_DH Glucose deh 94.6 0.34 7.3E-06 48.6 11.1 94 108-211 171-268 (355)
306 PRK14182 bifunctional 5,10-met 94.6 0.14 3.1E-06 51.3 8.3 75 107-212 154-229 (282)
307 COG1063 Tdh Threonine dehydrog 94.6 0.19 4.1E-06 51.2 9.3 91 112-211 170-268 (350)
308 PLN02616 tetrahydrofolate dehy 94.5 0.12 2.6E-06 53.5 7.8 75 107-212 228-303 (364)
309 PRK01438 murD UDP-N-acetylmura 94.5 0.12 2.6E-06 54.5 8.1 70 107-186 13-86 (480)
310 PRK14193 bifunctional 5,10-met 94.4 0.15 3.3E-06 51.2 8.1 75 107-212 155-232 (284)
311 PLN02897 tetrahydrofolate dehy 94.4 0.14 3E-06 52.7 7.9 75 107-212 211-286 (345)
312 PRK14106 murD UDP-N-acetylmura 94.4 0.17 3.6E-06 52.8 8.6 71 108-187 3-77 (450)
313 PRK14027 quinate/shikimate deh 94.3 0.095 2E-06 52.3 6.2 77 107-190 124-206 (283)
314 PLN00125 Succinyl-CoA ligase [ 94.2 0.22 4.9E-06 50.3 8.9 118 112-243 13-133 (300)
315 PRK14174 bifunctional 5,10-met 94.2 0.13 2.9E-06 51.8 7.2 80 106-212 155-235 (295)
316 PF00185 OTCace: Aspartate/orn 94.2 0.35 7.6E-06 44.1 9.3 69 109-188 1-83 (158)
317 cd00704 MDH Malate dehydrogena 94.1 0.14 3.1E-06 52.0 7.3 64 113-186 2-84 (323)
318 TIGR01758 MDH_euk_cyt malate d 94.1 0.13 2.8E-06 52.3 7.0 69 113-187 1-84 (324)
319 PRK06349 homoserine dehydrogen 94.1 0.13 2.7E-06 54.2 7.1 91 112-210 4-102 (426)
320 COG2910 Putative NADH-flavin r 94.0 0.19 4E-06 47.9 7.2 95 112-215 1-107 (211)
321 cd01492 Aos1_SUMO Ubiquitin ac 93.9 0.2 4.3E-06 47.3 7.3 36 105-147 16-52 (197)
322 cd00757 ThiF_MoeB_HesA_family 93.9 0.16 3.4E-06 48.7 6.7 28 105-133 16-43 (228)
323 PRK14184 bifunctional 5,10-met 93.8 0.13 2.8E-06 51.7 6.2 75 107-212 154-233 (286)
324 PRK08374 homoserine dehydrogen 93.8 2.3 5E-05 43.4 15.4 95 112-209 3-119 (336)
325 KOG2741 Dimeric dihydrodiol de 93.8 0.33 7.1E-06 49.9 9.1 85 112-200 7-94 (351)
326 PLN02353 probable UDP-glucose 93.8 0.38 8.1E-06 51.5 10.0 100 107-214 321-449 (473)
327 PRK14185 bifunctional 5,10-met 93.8 0.19 4.1E-06 50.7 7.3 75 107-212 154-233 (293)
328 PRK05562 precorrin-2 dehydroge 93.8 0.57 1.2E-05 45.5 10.4 98 92-199 8-106 (223)
329 PRK01390 murD UDP-N-acetylmura 93.8 0.17 3.6E-06 53.2 7.3 66 107-184 6-71 (460)
330 PLN02520 bifunctional 3-dehydr 93.7 0.14 3.1E-06 55.3 6.9 76 107-191 376-452 (529)
331 PLN02968 Probable N-acetyl-gam 93.7 0.18 4E-06 52.4 7.3 93 112-214 39-136 (381)
332 PRK07688 thiamine/molybdopteri 93.7 0.37 7.9E-06 49.4 9.4 88 105-199 19-137 (339)
333 TIGR00670 asp_carb_tr aspartat 93.7 0.27 5.8E-06 49.7 8.2 70 107-185 147-223 (301)
334 COG1648 CysG Siroheme synthase 93.7 0.43 9.3E-06 45.8 9.3 81 106-195 8-89 (210)
335 PRK05671 aspartate-semialdehyd 93.6 0.19 4.1E-06 51.5 7.2 90 111-214 4-99 (336)
336 cd01485 E1-1_like Ubiquitin ac 93.6 0.32 6.8E-06 45.9 8.1 36 105-147 14-50 (198)
337 PRK14874 aspartate-semialdehyd 93.6 0.23 5E-06 50.5 7.7 88 111-213 1-95 (334)
338 TIGR03366 HpnZ_proposed putati 93.6 0.52 1.1E-05 45.8 9.9 91 109-211 120-217 (280)
339 TIGR01772 MDH_euk_gproteo mala 93.5 0.3 6.5E-06 49.5 8.4 70 113-188 1-77 (312)
340 TIGR01202 bchC 2-desacetyl-2-h 93.5 0.39 8.5E-06 47.4 9.1 87 109-211 144-230 (308)
341 PRK02318 mannitol-1-phosphate 93.5 0.15 3.3E-06 52.7 6.3 84 112-202 1-104 (381)
342 PRK03369 murD UDP-N-acetylmura 93.4 0.22 4.8E-06 53.1 7.6 71 106-186 8-78 (488)
343 PLN02383 aspartate semialdehyd 93.4 0.24 5.3E-06 50.8 7.5 88 112-214 8-102 (344)
344 PRK09880 L-idonate 5-dehydroge 93.4 0.72 1.6E-05 46.1 10.8 93 108-211 168-265 (343)
345 PF04016 DUF364: Domain of unk 93.3 0.073 1.6E-06 48.1 3.1 88 106-211 7-94 (147)
346 TIGR01757 Malate-DH_plant mala 93.2 0.48 1E-05 49.6 9.4 22 112-133 45-67 (387)
347 PRK05086 malate dehydrogenase; 93.1 0.48 1E-05 47.9 9.1 72 112-187 1-78 (312)
348 TIGR00978 asd_EA aspartate-sem 93.1 0.31 6.7E-06 49.7 7.8 94 112-214 1-106 (341)
349 PRK02472 murD UDP-N-acetylmura 93.1 0.29 6.3E-06 50.9 7.7 70 108-186 3-76 (447)
350 PLN00106 malate dehydrogenase 93.1 0.22 4.8E-06 50.7 6.6 70 112-187 19-95 (323)
351 cd01487 E1_ThiF_like E1_ThiF_l 93.1 0.61 1.3E-05 43.1 8.9 30 113-148 1-31 (174)
352 cd01337 MDH_glyoxysomal_mitoch 93.0 0.24 5.2E-06 50.2 6.8 70 112-187 1-77 (310)
353 TIGR01745 asd_gamma aspartate- 93.0 0.89 1.9E-05 47.3 11.0 169 112-325 1-179 (366)
354 PLN03075 nicotianamine synthas 93.0 0.89 1.9E-05 46.0 10.7 100 109-214 123-237 (296)
355 PRK02006 murD UDP-N-acetylmura 93.0 0.29 6.4E-06 52.0 7.7 71 108-188 5-81 (498)
356 PRK12550 shikimate 5-dehydroge 93.0 0.26 5.6E-06 49.0 6.8 68 112-191 123-191 (272)
357 COG0002 ArgC Acetylglutamate s 93.0 0.61 1.3E-05 48.1 9.5 95 111-213 2-102 (349)
358 COG0078 ArgF Ornithine carbamo 92.9 0.39 8.4E-06 48.7 7.9 85 108-203 151-248 (310)
359 cd01483 E1_enzyme_family Super 92.9 0.75 1.6E-05 40.4 8.9 29 113-147 1-30 (143)
360 TIGR02822 adh_fam_2 zinc-bindi 92.8 0.68 1.5E-05 46.3 9.7 88 109-211 165-253 (329)
361 PRK05690 molybdopterin biosynt 92.8 0.43 9.3E-06 46.5 8.0 28 105-133 27-54 (245)
362 PRK06598 aspartate-semialdehyd 92.8 1.6 3.4E-05 45.5 12.4 169 111-325 1-180 (369)
363 PRK14181 bifunctional 5,10-met 92.8 0.44 9.6E-06 47.9 8.1 79 107-212 150-229 (287)
364 KOG0022 Alcohol dehydrogenase, 92.7 0.21 4.5E-06 51.1 5.7 52 106-164 189-240 (375)
365 PF10100 DUF2338: Uncharacteri 92.6 2.9 6.2E-05 44.1 14.0 171 111-297 1-206 (429)
366 PRK08762 molybdopterin biosynt 92.6 0.63 1.4E-05 48.0 9.3 88 105-199 130-246 (376)
367 PRK08644 thiamine biosynthesis 92.6 0.39 8.5E-06 45.8 7.2 37 105-148 23-60 (212)
368 TIGR01318 gltD_gamma_fam gluta 92.6 0.62 1.3E-05 49.4 9.4 73 109-188 140-236 (467)
369 PRK12771 putative glutamate sy 92.5 0.4 8.8E-06 51.8 8.1 76 107-189 134-233 (564)
370 PRK08306 dipicolinate synthase 92.5 0.47 1E-05 47.5 7.9 84 112-209 3-98 (296)
371 PF10728 DUF2520: Domain of un 92.4 0.73 1.6E-05 41.1 8.3 94 263-366 4-98 (132)
372 PRK08328 hypothetical protein; 92.4 0.66 1.4E-05 44.8 8.6 36 105-147 22-58 (231)
373 PRK05597 molybdopterin biosynt 92.4 0.81 1.8E-05 47.1 9.7 88 105-199 23-139 (355)
374 PRK12809 putative oxidoreducta 92.4 0.62 1.4E-05 51.4 9.4 74 108-188 308-405 (639)
375 PRK14804 ornithine carbamoyltr 92.4 0.57 1.2E-05 47.5 8.4 69 107-186 150-226 (311)
376 CHL00194 ycf39 Ycf39; Provisio 92.3 0.54 1.2E-05 46.6 8.1 69 112-187 1-73 (317)
377 PRK08664 aspartate-semialdehyd 92.3 0.5 1.1E-05 48.3 8.0 92 112-213 4-108 (349)
378 PRK04284 ornithine carbamoyltr 92.3 0.44 9.5E-06 48.8 7.6 70 107-185 152-231 (332)
379 KOG1495 Lactate dehydrogenase 92.3 1.6 3.4E-05 44.0 11.1 130 106-243 16-169 (332)
380 TIGR01771 L-LDH-NAD L-lactate 92.3 0.61 1.3E-05 46.9 8.4 62 116-187 1-73 (299)
381 PRK14168 bifunctional 5,10-met 92.2 0.52 1.1E-05 47.7 7.8 80 106-212 157-237 (297)
382 TIGR03026 NDP-sugDHase nucleot 92.1 0.77 1.7E-05 47.8 9.3 88 107-210 310-408 (411)
383 PF03447 NAD_binding_3: Homose 92.1 0.64 1.4E-05 39.5 7.3 82 118-209 1-87 (117)
384 PRK12562 ornithine carbamoyltr 92.1 0.57 1.2E-05 48.1 8.1 71 107-186 153-233 (334)
385 PLN02586 probable cinnamyl alc 92.0 1.1 2.3E-05 45.5 10.0 93 109-211 183-277 (360)
386 COG0771 MurD UDP-N-acetylmuram 91.9 0.41 9E-06 50.9 7.1 70 107-185 4-76 (448)
387 PRK08040 putative semialdehyde 91.8 0.3 6.5E-06 50.1 5.7 168 112-325 5-177 (336)
388 COG0136 Asd Aspartate-semialde 91.8 2 4.4E-05 44.1 11.6 94 112-214 2-99 (334)
389 PRK01713 ornithine carbamoyltr 91.6 0.68 1.5E-05 47.4 8.0 71 107-186 153-233 (334)
390 PRK10537 voltage-gated potassi 91.5 1 2.3E-05 47.1 9.4 90 112-210 241-335 (393)
391 PRK04690 murD UDP-N-acetylmura 91.4 0.58 1.3E-05 49.7 7.5 69 108-186 6-77 (468)
392 TIGR02355 moeB molybdopterin s 91.4 0.67 1.5E-05 45.1 7.4 28 105-133 19-46 (240)
393 PRK04308 murD UDP-N-acetylmura 91.4 0.66 1.4E-05 48.5 7.8 69 108-186 3-75 (445)
394 PRK14573 bifunctional D-alanyl 91.3 0.54 1.2E-05 53.2 7.7 66 111-185 4-70 (809)
395 PLN00141 Tic62-NAD(P)-related 91.3 0.74 1.6E-05 43.9 7.6 76 106-188 13-95 (251)
396 PRK05600 thiamine biosynthesis 91.1 0.55 1.2E-05 48.7 6.9 88 105-199 36-152 (370)
397 PRK03515 ornithine carbamoyltr 91.0 0.87 1.9E-05 46.7 8.2 70 107-185 153-232 (336)
398 cd08237 ribitol-5-phosphate_DH 91.0 1.5 3.2E-05 44.0 9.7 91 109-211 163-255 (341)
399 PRK02102 ornithine carbamoyltr 90.9 0.76 1.6E-05 47.1 7.6 71 107-186 152-232 (331)
400 PRK12769 putative oxidoreducta 90.8 0.84 1.8E-05 50.4 8.4 72 109-187 326-421 (654)
401 PRK06392 homoserine dehydrogen 90.8 0.55 1.2E-05 47.9 6.5 100 112-211 1-115 (326)
402 PRK06019 phosphoribosylaminoim 90.8 0.61 1.3E-05 47.9 6.8 64 111-184 2-69 (372)
403 TIGR01087 murD UDP-N-acetylmur 90.5 0.6 1.3E-05 48.5 6.6 65 113-186 1-70 (433)
404 COG0026 PurK Phosphoribosylami 90.5 0.39 8.6E-06 49.8 5.1 67 111-184 1-68 (375)
405 TIGR02819 fdhA_non_GSH formald 90.3 2.4 5.2E-05 43.8 10.7 97 108-211 184-298 (393)
406 PRK06728 aspartate-semialdehyd 90.2 0.77 1.7E-05 47.4 7.0 89 112-214 6-101 (347)
407 PF00899 ThiF: ThiF family; I 90.2 0.45 9.8E-06 41.6 4.6 31 112-148 3-34 (135)
408 PLN02342 ornithine carbamoyltr 90.2 1.1 2.4E-05 46.2 8.1 69 107-186 191-267 (348)
409 PRK07200 aspartate/ornithine c 90.1 1.1 2.5E-05 46.9 8.2 72 106-186 183-270 (395)
410 PRK00517 prmA ribosomal protei 90.1 1.3 2.8E-05 42.9 8.1 91 108-211 118-212 (250)
411 PRK14167 bifunctional 5,10-met 90.0 1.1 2.5E-05 45.2 7.8 79 107-212 154-233 (297)
412 KOG3007 Mu-crystallin [Amino a 90.0 0.59 1.3E-05 46.9 5.6 97 113-217 140-242 (333)
413 TIGR01296 asd_B aspartate-semi 89.8 0.65 1.4E-05 47.5 6.0 87 113-214 1-94 (339)
414 TIGR01082 murC UDP-N-acetylmur 89.8 0.85 1.8E-05 47.8 7.0 64 113-185 1-65 (448)
415 PRK12409 D-amino acid dehydrog 89.7 0.45 9.7E-06 48.7 4.8 34 111-150 1-34 (410)
416 TIGR01532 E4PD_g-proteo D-eryt 89.7 1.1 2.3E-05 45.9 7.4 95 113-212 1-120 (325)
417 PRK07806 short chain dehydroge 89.6 5.3 0.00011 37.4 11.6 36 108-150 4-40 (248)
418 PRK08223 hypothetical protein; 89.6 1.6 3.6E-05 43.9 8.5 28 105-133 22-49 (287)
419 PLN02178 cinnamyl-alcohol dehy 89.4 2.6 5.7E-05 43.2 10.1 91 109-211 178-272 (375)
420 PRK07878 molybdopterin biosynt 89.2 1.3 2.9E-05 46.0 7.9 28 105-133 37-64 (392)
421 PRK00779 ornithine carbamoyltr 89.1 1.3 2.9E-05 44.7 7.6 70 107-185 149-224 (304)
422 COG2227 UbiG 2-polyprenyl-3-me 89.1 3 6.5E-05 41.1 9.7 91 108-211 58-160 (243)
423 TIGR03693 ocin_ThiF_like putat 89.0 1.8 3.9E-05 47.9 8.9 78 109-193 128-219 (637)
424 PRK03803 murD UDP-N-acetylmura 89.0 1.1 2.5E-05 46.8 7.3 66 112-186 7-76 (448)
425 PLN02527 aspartate carbamoyltr 88.8 1.5 3.1E-05 44.5 7.6 71 107-185 148-225 (306)
426 PRK10637 cysG siroheme synthas 88.8 2.3 5E-05 45.1 9.5 79 106-193 8-87 (457)
427 PRK06463 fabG 3-ketoacyl-(acyl 88.8 2.9 6.2E-05 39.6 9.3 36 108-150 5-41 (255)
428 COG4569 MhpF Acetaldehyde dehy 88.8 0.94 2E-05 43.9 5.8 78 112-198 5-91 (310)
429 COG1062 AdhC Zn-dependent alco 88.7 2.5 5.5E-05 43.7 9.2 72 109-190 185-266 (366)
430 cd05188 MDR Medium chain reduc 88.7 5.4 0.00012 37.0 11.0 93 108-211 133-231 (271)
431 TIGR03316 ygeW probable carbam 88.6 1.7 3.7E-05 45.0 8.1 72 106-186 166-253 (357)
432 cd01486 Apg7 Apg7 is an E1-lik 88.6 1.1 2.4E-05 45.5 6.6 21 113-133 1-21 (307)
433 COG1004 Ugd Predicted UDP-gluc 88.5 1.4 3E-05 46.3 7.3 85 108-209 308-405 (414)
434 PRK03806 murD UDP-N-acetylmura 88.4 1.4 3.1E-05 45.9 7.5 69 108-186 4-73 (438)
435 PRK12814 putative NADPH-depend 88.4 2 4.4E-05 47.5 9.1 74 107-187 190-287 (652)
436 PRK06182 short chain dehydroge 88.4 3.5 7.7E-05 39.5 9.7 71 109-187 2-83 (273)
437 PRK08192 aspartate carbamoyltr 88.3 1.9 4.1E-05 44.4 8.1 71 107-185 156-233 (338)
438 cd01491 Ube1_repeat1 Ubiquitin 88.3 1.8 3.9E-05 43.5 7.9 36 105-147 14-50 (286)
439 TIGR03570 NeuD_NnaD sugar O-ac 88.3 1.7 3.6E-05 39.4 7.0 77 113-200 1-81 (201)
440 PRK05786 fabG 3-ketoacyl-(acyl 88.3 5.5 0.00012 36.9 10.7 37 108-151 3-40 (238)
441 cd08255 2-desacetyl-2-hydroxye 88.3 4.1 8.9E-05 38.8 10.0 91 108-211 96-189 (277)
442 TIGR03451 mycoS_dep_FDH mycoth 88.2 4.5 9.8E-05 40.6 10.7 92 109-211 176-275 (358)
443 cd08239 THR_DH_like L-threonin 88.1 3.8 8.3E-05 40.5 10.0 92 108-210 162-260 (339)
444 PRK12810 gltD glutamate syntha 88.0 1.8 4E-05 45.7 8.1 74 107-187 140-237 (471)
445 PRK11891 aspartate carbamoyltr 88.0 2 4.3E-05 45.7 8.2 72 107-186 238-316 (429)
446 PRK07411 hypothetical protein; 87.9 3.1 6.8E-05 43.3 9.6 88 105-199 33-149 (390)
447 PRK06057 short chain dehydroge 87.9 3.1 6.8E-05 39.3 8.9 36 107-149 4-40 (255)
448 PLN02514 cinnamyl-alcohol dehy 87.8 4 8.7E-05 41.2 10.1 93 109-211 180-274 (357)
449 TIGR03201 dearomat_had 6-hydro 87.8 3.1 6.8E-05 41.6 9.3 47 109-163 166-212 (349)
450 TIGR00658 orni_carb_tr ornithi 87.8 1.8 3.8E-05 43.8 7.5 70 107-185 145-223 (304)
451 cd08281 liver_ADH_like1 Zinc-d 87.7 4.4 9.5E-05 41.0 10.3 90 109-209 191-287 (371)
452 PRK02705 murD UDP-N-acetylmura 87.6 1.8 3.8E-05 45.3 7.6 67 113-185 2-75 (459)
453 TIGR01317 GOGAT_sm_gam glutama 87.6 2.5 5.4E-05 45.1 8.9 74 107-187 140-237 (485)
454 PRK01581 speE spermidine synth 87.5 4 8.7E-05 42.6 10.0 123 80-213 122-269 (374)
455 PRK10309 galactitol-1-phosphat 87.5 3.5 7.6E-05 41.0 9.4 93 109-211 160-259 (347)
456 TIGR02469 CbiT precorrin-6Y C5 87.5 7.4 0.00016 32.1 10.0 94 109-210 19-120 (124)
457 PRK13984 putative oxidoreducta 87.2 2.3 5E-05 46.4 8.5 72 109-187 282-377 (604)
458 COG0289 DapB Dihydrodipicolina 87.2 3.8 8.3E-05 40.9 9.2 161 111-285 2-179 (266)
459 TIGR03649 ergot_EASG ergot alk 87.1 0.81 1.8E-05 44.3 4.4 66 113-188 1-77 (285)
460 PRK07825 short chain dehydroge 87.1 3.4 7.5E-05 39.5 8.7 36 108-150 3-39 (273)
461 PRK09242 tropinone reductase; 86.9 2.5 5.4E-05 40.0 7.6 36 108-150 7-43 (257)
462 PLN02214 cinnamoyl-CoA reducta 86.8 2.3 5.1E-05 42.7 7.7 76 106-188 6-91 (342)
463 PRK09414 glutamate dehydrogena 86.8 1.7 3.6E-05 46.4 6.9 36 106-148 228-263 (445)
464 PLN02477 glutamate dehydrogena 86.8 1.3 2.8E-05 46.8 6.0 32 106-144 202-233 (410)
465 PRK02255 putrescine carbamoylt 86.6 2.7 5.8E-05 43.2 8.1 71 107-186 151-230 (338)
466 PRK15182 Vi polysaccharide bio 86.6 4 8.7E-05 43.1 9.6 95 106-214 310-415 (425)
467 PLN02661 Putative thiazole syn 86.5 1 2.2E-05 46.7 5.0 59 84-149 65-125 (357)
468 PRK07831 short chain dehydroge 86.5 3.3 7.1E-05 39.3 8.2 39 104-149 11-51 (262)
469 COG0334 GdhA Glutamate dehydro 86.4 1.9 4.1E-05 45.4 6.9 38 107-151 204-241 (411)
470 PRK07060 short chain dehydroge 86.4 3.1 6.7E-05 38.7 7.8 38 107-151 6-44 (245)
471 PLN02740 Alcohol dehydrogenase 86.3 4.5 9.7E-05 41.2 9.6 73 108-188 197-278 (381)
472 cd08298 CAD2 Cinnamyl alcohol 86.1 4.7 0.0001 39.4 9.3 88 108-210 166-254 (329)
473 cd05283 CAD1 Cinnamyl alcohol 86.1 4.1 9E-05 40.3 9.0 93 108-211 168-262 (337)
474 PLN02662 cinnamyl-alcohol dehy 85.9 2.7 5.9E-05 41.1 7.5 71 110-187 4-85 (322)
475 PRK05717 oxidoreductase; Valid 85.9 4 8.7E-05 38.6 8.5 36 107-149 7-43 (255)
476 PRK04523 N-acetylornithine car 85.9 2.8 6.1E-05 43.0 7.8 71 107-186 165-252 (335)
477 PRK00856 pyrB aspartate carbam 85.8 2.1 4.5E-05 43.4 6.7 65 107-185 153-220 (305)
478 PRK14805 ornithine carbamoyltr 85.7 2.4 5.1E-05 42.9 7.0 70 107-186 144-222 (302)
479 PLN03209 translocon at the inn 85.6 1.6 3.5E-05 48.0 6.2 75 106-187 76-168 (576)
480 PRK11908 NAD-dependent epimera 85.5 2.2 4.8E-05 42.6 6.8 69 111-185 1-75 (347)
481 PRK07231 fabG 3-ketoacyl-(acyl 85.5 3.6 7.8E-05 38.3 7.8 36 108-150 3-39 (251)
482 PRK13394 3-hydroxybutyrate deh 85.4 3.4 7.4E-05 38.8 7.7 36 108-150 5-41 (262)
483 PF00070 Pyr_redox: Pyridine n 85.4 1.9 4.1E-05 34.1 5.0 32 113-150 1-32 (80)
484 PRK06079 enoyl-(acyl carrier p 85.3 4.1 9E-05 38.8 8.3 87 107-214 4-93 (252)
485 COG0074 SucD Succinyl-CoA synt 85.3 1.7 3.8E-05 43.7 5.8 119 112-246 9-131 (293)
486 cd08285 NADP_ADH NADP(H)-depen 85.2 5 0.00011 39.9 9.1 91 109-209 166-263 (351)
487 PRK10083 putative oxidoreducta 85.2 8.6 0.00019 37.8 10.7 93 108-210 159-257 (339)
488 PRK09186 flagellin modificatio 85.2 3.8 8.3E-05 38.4 7.9 35 108-149 2-37 (256)
489 PF01494 FAD_binding_3: FAD bi 85.2 1.3 2.8E-05 43.0 4.8 32 113-150 3-34 (356)
490 PRK08265 short chain dehydroge 85.1 5.5 0.00012 38.0 9.0 36 108-150 4-40 (261)
491 PLN02827 Alcohol dehydrogenase 85.1 6.6 0.00014 40.1 10.1 92 108-209 192-292 (378)
492 PRK12828 short chain dehydroge 85.0 8.5 0.00018 35.3 10.0 37 108-151 5-42 (239)
493 PRK13814 pyrB aspartate carbam 85.0 2 4.2E-05 43.7 6.1 65 107-184 154-223 (310)
494 PRK14031 glutamate dehydrogena 84.9 2.7 5.9E-05 44.8 7.4 36 106-148 224-259 (444)
495 PRK11064 wecC UDP-N-acetyl-D-m 84.9 2.2 4.8E-05 44.7 6.7 75 106-193 316-401 (415)
496 cd05313 NAD_bind_2_Glu_DH NAD( 84.7 1.4 3.1E-05 43.5 4.9 32 106-144 34-65 (254)
497 cd08234 threonine_DH_like L-th 84.6 5.3 0.00012 39.0 8.9 92 108-210 158-255 (334)
498 PRK05867 short chain dehydroge 84.6 3.2 7E-05 39.2 7.1 35 108-149 7-42 (253)
499 PF02056 Glyco_hydro_4: Family 84.6 5.6 0.00012 37.5 8.5 85 113-200 1-96 (183)
500 PRK08324 short chain dehydroge 84.6 3.1 6.7E-05 46.3 7.9 40 106-152 418-458 (681)
No 1
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1e-75 Score=572.17 Aligned_cols=292 Identities=33% Similarity=0.532 Sum_probs=278.9
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCC
Q 014863 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 101 f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~AD 180 (417)
+..+ +.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|.++||. +.+++|++++||
T Consensus 10 da~l-~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~AD 76 (338)
T COG0059 10 DADL-DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRAD 76 (338)
T ss_pred cCCh-hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCC
Confidence 3344 58999 9999999999999999999999 999999999999999999999999 579999999999
Q ss_pred eEEEeecchhHHHHHH-HHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 181 LVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 181 iViLavpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
+|++++||..|.+||+ +|.|+|++|++|.|+|||+++|. .+.||+|++|+||+||+||+.||++|++| +|+
T Consensus 77 vim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~Gv 148 (338)
T COG0059 77 VVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGV 148 (338)
T ss_pred EEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCc
Confidence 9999999999999998 79999999999999999999986 46999999999999999999999999996 899
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
|++|+++||+||+++++|++|++++|++| +++|||++|+++||||||++|||++.++|+++||++|++|++||.||++
T Consensus 149 P~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE 228 (338)
T COG0059 149 PALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFE 228 (338)
T ss_pred eeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhhcchhHHHHHHcCCcccccccc
Q 014863 338 TVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYR 414 (417)
Q Consensus 338 ~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~ 414 (417)
|+|+++ +|+|||+|.|+..|+++|| +|++||++.++ + +..++++|+++|++||||+|+++|+++++.-|+..++
T Consensus 229 ~lhE~k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~g~p~l~~ 305 (338)
T COG0059 229 CLHELK-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQAGRPKLEA 305 (338)
T ss_pred HHHHHH-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhcCCHHHHH
Confidence 999999 9999999999999999999 78899998665 3 5667899999999999999999999999999999998
Q ss_pred cc
Q 014863 415 LR 416 (417)
Q Consensus 415 ~~ 416 (417)
||
T Consensus 306 ~r 307 (338)
T COG0059 306 LR 307 (338)
T ss_pred HH
Confidence 87
No 2
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=3.5e-70 Score=560.48 Aligned_cols=312 Identities=27% Similarity=0.394 Sum_probs=294.8
Q ss_pred ccccccchhhHhhhh-----hcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEE
Q 014863 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Viv 145 (417)
.|||||++||+|+++ |++++| |++.+..|+| |||+|||||+||+++|+|||++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 778888 9888899999 9999999999999999999999 999999
Q ss_pred EecCC-----chhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhh
Q 014863 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (417)
Q Consensus 146 g~r~~-----~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~ 220 (417)
++|++ ++++++|.++||. +.+.+|++++||+|++++||..+..++++|+|+||+|++|.++|||++++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 5789999999997 568999999999999999999988999999999999999999999999876
Q ss_pred ccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 014863 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (417)
Q Consensus 221 ~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~--qd~sgea~e~a~al~~aiG~~~--~iett~~~ 296 (417)
++.||+|+|||+|+||+||+.||++|++| +|+|++|||+ ||++|+++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 46999999999999999999999999996 8999999999 8999999999999999999997 89999999
Q ss_pred hhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014863 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 297 E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~ 376 (417)
|+++||||||++|||+++++++++||.+|++|++|++||+++++++. .|+++|+++||.+|+|++| ++++||.+..
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S--~tak~ga~~~- 287 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKIRAFEL- 287 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhcc--chhhcccccc-
Confidence 99999999999999999999999999999999999999999999998 9999999999999999999 5668998743
Q ss_pred cChhHHHHH----HHHHHhhhcchhHHHHHHcCCcccccccccc
Q 014863 377 SYYPCMEIL----YECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 377 ~~~~~~~~m----~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
.+.+|++| +++|++||||+|+|+|+.++...++++..||
T Consensus 288 -~~~~k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r 330 (487)
T PRK05225 288 -SEQLKEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWR 330 (487)
T ss_pred -cHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHH
Confidence 45566666 9999999999999999999999999999998
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=5.5e-69 Score=534.50 Aligned_cols=284 Identities=31% Similarity=0.512 Sum_probs=266.0
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 104 ~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..+.|+| ++|||||+|+||.++|+||+++ |++|++++|+ .++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3578999 9999999999999999999999 9999998876 6678888888987 458999999999999
Q ss_pred EeecchhHHHHHH-HHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEE
Q 014863 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 184 Lavpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~l 262 (417)
+++|+..+.+++. +++++|++|++|+++|||+++|. .+.||+|+|||||+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999988888886 69999999999999999999876 46999999999999999999999999996 899999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 263 iav~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
||++||+||++.+++++|+.++|++| +++|||++|+++||||||++|||++.++|+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhcc---ChhHHHHHHHHHHhhhcchhHHHHHHcCCccccc
Q 014863 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 341 ~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~---~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
+++ +|+|||+|+|+.+|+++|| +|+|||+|.++. ++.+|+.|+++|++||||+|||+|+++++.-+++
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~~g~~~ 299 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQAGRPT 299 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCHH
Confidence 997 9999999999999999999 788999987663 7789999999999999999999999998865543
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=6.9e-64 Score=501.55 Aligned_cols=288 Identities=32% Similarity=0.517 Sum_probs=269.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
...++| +||+|||+|+||.++|++|+++ |++|++++++++++++.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 467889 9999999999999999999999 9999999888788888999999873 589999999999999
Q ss_pred eecchhHHHHH-HHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
++||..+.+++ +++.|+|++|++|+++|||++++++. .||++++|||+|||+|++.+|++|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 67999999999999999999998864 889999999999999999999999996 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
++++|+++++++++++|+.++|+++ +++|||.+|+++||||||++|||++.++++++|+.+|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999997 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhhcchhHHHHHHcCCccccccccc
Q 014863 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 342 l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
++ +|+|||+|+|+.+|+++|| +|+|||+|..+ + ++.+|+.|+++|++||||+|+|+||++++..+...-.+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~~~~~~~~~~ 305 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENKAGRPTFKAL 305 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHH
Confidence 97 9999999999999999999 78899998665 2 67899999999999999999999999988765554443
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=3.3e-60 Score=473.06 Aligned_cols=280 Identities=33% Similarity=0.514 Sum_probs=256.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+| |||+|||+|+||+++|++|+++ |+++++++++++++++.+.+.|+.. .++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9988888887667788888889873 468899999999999999
Q ss_pred chhHH-HHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|+.+. .+.++|.+++++|.+|+++|||++++++. .+|++++|||+|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 99555 45567999999999999999999999865 788899999999999999999999996 8999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~--~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~ 344 (417)
+++++++++++++|+.++|..| +++|+|++|+++|+|+++|+|||++|+++.+++|++|++|||||+||++++||++
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~- 219 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK- 219 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 9999999999999999999996 8999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcHHHHHhcccCchhhhhhhhhhcc--ChhHHHHHHHHHHhhhcchhHHHHHHcCCcccc
Q 014863 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYV 410 (417)
Q Consensus 345 ~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~ 410 (417)
|+++|++++|+..|+++|| +|+|||+|..++ ++.+|+.|+++|++||||+|+|+|+++++..+.
T Consensus 220 g~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~~~~~ 285 (314)
T TIGR00465 220 LIVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENEAGKP 285 (314)
T ss_pred HHHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhccCCcH
Confidence 9999999999999999999 678999984443 566889999999999999999999988755443
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=1.2e-40 Score=302.56 Aligned_cols=160 Identities=44% Similarity=0.726 Sum_probs=137.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+| |+|+|||||+||+++|+||||| |++|++++|+++++|++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999999999999999 5799999999999999999
Q ss_pred chhHHHHH-HHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl-~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|..|.++| ++|.|+|++|++|.++|||+++|. .+.||++++|+|++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 99999999 579999999999999999999875 36899999999999999999999999996 8999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 014863 267 QDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~ 287 (417)
||.|+++++++++|++++|++
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
No 7
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-35 Score=285.43 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=197.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|+||+|||+|+||.+++.+|.++ | .+|++.+|..++....+.++|... ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 48999999999999999999999 7 378888887666556888888873 567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...+++.++.+ ..++++ |++++|+++..++. .++ +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999999 667765 67999999999987 677 889999999999998 799998 777
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
..+++++..+.+.+|+..+|.. .+..+++|+..|+++||+|| ++|++.+++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999975 33345888999999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
+. |+++|+.++|. ..|+|+||||.-
T Consensus 205 ~~-Gaakll~e~~~~p~~Lr~~VtSPGG 231 (266)
T COG0345 205 VA-GAAKLLLESGEHPAELRDQVTSPGG 231 (266)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCcCCCc
Confidence 99 99999999999 899999999953
No 8
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=1.8e-33 Score=275.45 Aligned_cols=220 Identities=18% Similarity=0.249 Sum_probs=189.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHH-HcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+||+|||+|+||.+++++|.++ |+ +|++.+|+ .++.+.+. +.|+.. +.++.|++++||+||||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~-~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLN-VSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCC-HHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999988 64 56666554 33444444 478754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...++++++.++++++++ |++++|+++..+++ .++...+++|+|||+|..+ |+|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998876 56999999998876 5555668999999999988 689998 567
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
+++++.+..+.+..||..+|.. + +..++.|+..|+|+||+|| +++++.+++++.|+|+++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--~------~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--E------VVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--E------EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999965 1 2234678888999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
+. |.++|+.++|. ..|+|+|+||.-
T Consensus 208 ~~-G~a~ll~~~~~~p~~l~~~V~sPGG 234 (272)
T PRK12491 208 VL-GSAKMVLETGIHPGELKDMVCSPGG 234 (272)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 99 99999999988 899999999953
No 9
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.98 E-value=1.1e-30 Score=255.81 Aligned_cols=221 Identities=14% Similarity=0.168 Sum_probs=184.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHH-HHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G-~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|+||+|||+|+||.+++++|+++ | .+|+++.++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 68999999999999999999988 7 4677777654332222 22232 222 3577888999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
|+||+...++++++.++++++++ |+++.|+++..+++ .+|. .++||+|||+|..+ |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 99999999999999999988864 67999999988876 4443 58999999999888 689997 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~-Gl~~e~A~~~~ 338 (417)
+.+.+++.+.++.+..+|..+|... +..+++|+..|+|+||+|| +++++.+++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVM--------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEE--------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6688899999999999999999652 2223678899999999999 699999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 339 VECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 339 ~~~l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
.|++. |.++|+.++|. ..|+|+||+|.-
T Consensus 206 ~~~~~-G~a~l~~~~~~~p~~l~~~v~spgG 235 (277)
T PRK06928 206 NFALA-GTGKLLVEEDYTFSGTIERVATKGG 235 (277)
T ss_pred HHHHH-HHHHHHHccCCCHHHHHHhCCCCCh
Confidence 99999 99999999987 999999999953
No 10
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.97 E-value=2.1e-29 Score=244.50 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=179.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
+||+|||+|+||.+++++|+++ +. ++++.+++..+ .+... ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35554443211 24432 4577888899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
|+...++++++.|+++++.+|++++|+++..++. .++.+..++++|||+|... |.|.+. +++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999988777789999999887765 4455557999999999666 467765 67788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~ 343 (417)
+++.+..+.+..+|..+|... +..++.|+..++++||+|| +++++.+++++.|+++++|+++++|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQ--------EIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEE--------EEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 889999999999999999651 2223578888999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHhcccCchh
Q 014863 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 344 ~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
|.++|+.++|. ..|+|+||+|.-
T Consensus 203 -G~a~ll~~~~~~~~~l~~~v~spgG 227 (260)
T PTZ00431 203 -GSVHMVKASDQPVQQLKDDVCSPGG 227 (260)
T ss_pred -HHHHHHHhcCCCHHHHHHhCCCCCh
Confidence 99999999986 899999999953
No 11
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.96 E-value=1.1e-27 Score=234.24 Aligned_cols=220 Identities=13% Similarity=0.154 Sum_probs=183.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchh-HHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+||+|||+|+||.+++++|.++ | .+|++.+|+.++. ...+...|+.. ..++.++++++|+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 6 5677777754333 33344567754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE-eccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~-a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...++++++.+.++++++|+. ++|+++..+.+ ..+.+.+|+++|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 999999999999999988887664 69999887765 4456678999999999887 467885 666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
..+++.+..+.++.+|..+|... +..| ++|+..+.++|++|+ +++++.+.+++.|+++++|++...++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-----~v~e---~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-----VVEE---EDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-----EeCH---HHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 77888999999999999999642 1133 467778889999999 78999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCch
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
+. +.++++.+++. ..|++.+|+|.
T Consensus 210 ~~-gsa~~~~~~~~~~~~l~~~v~spg 235 (279)
T PRK07679 210 MI-GAAEMLKASEKHPSILRKEITSPG 235 (279)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhcCCCc
Confidence 99 99999997665 88999999885
No 12
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.96 E-value=2.1e-27 Score=226.16 Aligned_cols=221 Identities=14% Similarity=0.159 Sum_probs=180.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---e-EEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~-Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+||+|||+|+||.+++.+|.+. +. + +++.+|++. +..+.+...|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999887 52 3 555555443 3334444467653 467888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
||+.+.++++++.+++++..+|++++|+++..++. .++.+..++++|||.|... |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999999886433566889999888876 5566668999999999866 5789885 456
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
.+.+.+..+.+..+|..+|.... ..| +.+...++++||.|+ +++++.+.+++.|+++++|++++.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999997622 233 456677899999999 789999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHhcccCchh
Q 014863 343 TGIISKIISTQG-MLAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~~~~~li~e~G-~~~l~~~vs~~~~ 367 (417)
. |.++|+.+.+ ...|+|+|++|.-
T Consensus 211 ~-g~~~~~~~~~~~~~l~~~v~spgG 235 (245)
T PRK07634 211 S-GSASMLEQTQDPANLREQVTTPGG 235 (245)
T ss_pred H-HHHHHHhCCCCHHHHHHhCCCCCh
Confidence 9 9999998743 3899999999963
No 13
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-28 Score=234.50 Aligned_cols=220 Identities=20% Similarity=0.240 Sum_probs=193.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHH-HHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|||||.|+|..++++++..+ |+ +++.... ..++... .+..|... +.++.+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 5799999999999999999988 76 4444444 4455555 78889875 566789999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
+|+.+.+++.++.+.+..+++| +.++|..+..+++ .++...+|||+|||+|..+ |+|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 9999999999999888888864 5899999988876 5566779999999999888 688985 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
..+++.++.+++..++..+|.. .|..+++++..|.|+|++|+ ++|++.|.+|+.|+||++|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999987 56677999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
+. |.+||++++|. ..|+|.||||.-
T Consensus 206 ll-GAakMVl~s~qHP~~Lkd~V~SPgG 232 (267)
T KOG3124|consen 206 LL-GAAKMVLASGQHPAQLKDDVCSPGG 232 (267)
T ss_pred HH-hHHHHHHhccCCcHHHhCCCCCCCc
Confidence 99 99999999998 999999999953
No 14
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.96 E-value=8.5e-27 Score=225.06 Aligned_cols=220 Identities=15% Similarity=0.199 Sum_probs=182.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|||+|||+|+||.+++++|+++ |+ +|+++++++....+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 5899999999999999999998 86 77777343344456666778864 5678889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|+...++++++.+.++++++ |++++|+++..+.. ..+.. +++++|||.|... |.+.+. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999999988886 55779998776654 33333 7999999999877 456765 5667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
...+.+..+.++.++..+|. ++.. .| +.|+..+.++|++|+ +++++.+.+++.|+++++|++.+.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~---~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVV---DE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEe---CH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77888999999999999995 2222 34 567777889999999 689999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
. ++++|+.++|. ..|+++|++|.-
T Consensus 206 ~-gs~~l~~~~~~~~~~l~~~v~spgG 231 (266)
T PLN02688 206 L-GAAKMVLETGKHPGQLKDMVTSPGG 231 (266)
T ss_pred H-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 9 99999999888 899999999953
No 15
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=99.95 E-value=6.8e-29 Score=223.03 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=106.5
Q ss_pred hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014863 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 ~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++|+++||++|++||+||.||++|+|++. +|+++|+++|+.+|+++|| +|++||.+
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 67899999999999999999999999999999999999999999999966 9999999999999999999 88899998
Q ss_pred hhc-c-ChhHHHHHHHHHHhhhcchhHHHHHHcCCccccccccc
Q 014863 374 YSA-S-YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 374 ~~~-~-~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
..+ + ..++++.|+++|++||||+|+|+|+.+++..++..-.|
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~g~~~l~~~ 121 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQAGDPRLNAM 121 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcCCCHHHHHH
Confidence 544 3 46788999999999999999999999998888775444
No 16
>PRK07680 late competence protein ComER; Validated
Probab=99.95 E-value=3e-26 Score=223.15 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=175.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|+||.+++.+|.++ |+ +|.+.+|+..+....+.+. |+.. ..++.+++.++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 5777666543332333333 5653 467888899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
||+...++++++.|+++++++|+ +++|+++..++. .++ ..++++|||+|... +.|.+. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 99999999999999998888654 667788777765 333 36999999988654 356775 445
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~-~Gl~~e~A~~~~~~ 340 (417)
....+.+..+.+..++..+|.. . +..+++++..+.++|++|+ +++++.+.+++ .|+++++|++++.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~-----~---~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP-----L---VIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE-----E---EEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667788899999999999954 1 2223677778999999999 68999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHhcccCch
Q 014863 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 341 ~l~~~~~~li~e~G~--~~l~~~vs~~~ 366 (417)
++. |.++|+.+++. ..|+|+|++|.
T Consensus 205 ~~~-G~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLI-GMGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHH-HHHHHHHhcCCCHHHHHHhCCCCC
Confidence 999 99999999876 89999999996
No 17
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.95 E-value=7.5e-26 Score=218.59 Aligned_cols=221 Identities=16% Similarity=0.204 Sum_probs=181.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---ceEEEEecCCchhHHHHHH-cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
|+||+|||+|+||.+++..|.++ | .+|.+.+|+.+ ..+...+ .|+.. ..+..++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~-~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPE-KRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHH-HHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 58999999999999999999988 7 56777666543 3444444 47653 467788889999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
||+...++++++.+++ +..+|++++|++...++. .++.+.+++++|||.|... |.|++. +++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecC
Confidence 9999999999999987 334567999998777765 4455678999999998655 456764 6678
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l 342 (417)
.+.+.++.+.+..++..+|....+. .| +.++..++++|++|+ +++++.+.+++.|+|+++|.+.+.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~~----~e---~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 206 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWVD----DE---KQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTV 206 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEEC----Ch---HhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8889999999999999999642221 13 467788999999997 788999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
. +.++++.++|. ..++++|++|.-
T Consensus 207 ~-g~~~~~~~~~~~~~~l~~~v~tpgG 232 (267)
T PRK11880 207 L-GAAKLLLESGEHPAELRDNVTSPGG 232 (267)
T ss_pred H-HHHHHHHhcCCCHHHHHHhCCCCcH
Confidence 9 99999999887 999999999953
No 18
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.92 E-value=2.6e-24 Score=207.53 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=168.3
Q ss_pred ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchhhhh
Q 014863 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (417)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~ 219 (417)
.+|++++|+.++..+.+.+.|+.. ..++.++++++|+||||+||+...++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 367888876555445556678764 567888999999999999999999999999988877665 669999999988
Q ss_pred hccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhh
Q 014863 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (417)
Q Consensus 220 ~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~ 299 (417)
+. .++.+.+++|+|||+|... |+|++. ++...+++.+..+.+..||..+|... +..
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~~--------~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEVV--------ELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCEE--------EEC
Confidence 76 5666668999999999888 588987 66788899999999999999999652 222
Q ss_pred hhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 300 ~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
++.|+..++++||+|| +++++.+.+++.|+++++|.+++.|++. |.++|+.++|. ..|+++|++|.-
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~-G~a~l~~~~~~~~~~l~~~v~spgG 214 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVK-GAAKLLEESGEHPALLKDQVTSPGG 214 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHcCCCCcH
Confidence 3677888999999999 7999999999999999999999999999 99999999977 999999999964
No 19
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.92 E-value=1.1e-23 Score=203.43 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=162.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|||+|||+|+||.+++++|++. |+ .+.+++|+.++..+.+... |+.. +.++.++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4899999999999999999988 65 3455555544333334434 3543 5688889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|+...++++++. +++|++ |++++|+++..++. ..+.+..++++|||+|... +.|++.+ ++.
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 999999998763 567775 56889999888876 4455668999999998776 4678773 322
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~ 346 (417)
.+.++.++..+|....+ .+|...|+++..+...+..-.+++++.+.+++.|+|+++|++...+++. |.
T Consensus 133 -------~~~~~~l~~~lG~~~~~----~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~-G~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVEC----DSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFA-SL 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEEE----CChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HH
Confidence 25789999999975322 2354556554443222222228899999999999999999999999999 99
Q ss_pred HHH-HHHhcH--HHHHhcccCchh
Q 014863 347 SKI-ISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 347 ~~l-i~e~G~--~~l~~~vs~~~~ 367 (417)
++| +.+++. ..|+|+||||.-
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spgG 224 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKGG 224 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCCc
Confidence 999 677766 899999999953
No 20
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.86 E-value=2e-20 Score=189.82 Aligned_cols=267 Identities=15% Similarity=0.085 Sum_probs=177.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
++|+|||+|+||+++|++|++. |+++.++.+... .....+...|+. +....+.++++++||+||+|+|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 887766655432 223333334444 2223567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~p-~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
..++++++.+ .++++.+|+++++++...++......+...++|..|| ++|... ..+..+....+.|.++++++..+.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999998 4899999999999975433211113455678999999 444421 122222222335678889999989
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 014863 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~l 349 (417)
+.+..+.++.++..+|.. ++..+..+ .+..+.+.+.+|.++-..+ +...|.++++++.++.+.+. .++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~~------HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfr-d~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAEE------HDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFR-DITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHHH------HhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhccccc-CCccc
Confidence 999999999999999964 33333233 3455888899999665544 56678899999999999888 77777
Q ss_pred HHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHHHHHhhhcch--hHHHHHHc
Q 014863 350 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGS--EIRSVVLA 404 (417)
Q Consensus 350 i~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~g~--~~~~~~~~ 404 (417)
.. +.-.-.+|.|+++....-.. -+...+.|.++.+.+++++ ..++++.+
T Consensus 221 a~-~~p~~w~di~~~N~~~~~~~-----l~~~~~~l~~~~~~l~~~d~~~l~~~~~~ 271 (359)
T PRK06545 221 AS-SDPGMWRDILESNAEALLDA-----LDEWIEDLDRARDALESGDAEAIAELFDA 271 (359)
T ss_pred cC-CCHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 63 33344444444432211111 1223334455555555544 33555444
No 21
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.83 E-value=3e-19 Score=176.17 Aligned_cols=261 Identities=16% Similarity=0.171 Sum_probs=181.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceE-EEEecCCchhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLavpd~ 189 (417)
++|+|||+|+||+++|+.|+.. |+.+ +++.+.+....+.+.+.|+.. +...+. .+++.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 8999999999999999999999 9877 455555556678888888873 222333 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh-HHHHHhhcccccCCCceEEEeecCC
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~-vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
+..++++++.|++++|++|+|+.+++-..++......|++++||..||.. |+. ...+| .+..+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~-G~~~~~~lf--------~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMF-GPEADAGLF--------ENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCC-CCccccccc--------CCCEEEEcCCCC
Confidence 99999999999999999999999997433322223666666999999943 442 33333 458889999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014863 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK 348 (417)
Q Consensus 269 ~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~ 348 (417)
.+.+.++.+.++|.++| .++++++.++|++.- +.+++..+.+..++...+-+.+....++.+++. ++.+
T Consensus 147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as-----~~fr 215 (279)
T COG0287 147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLETEELLVLKLAS-----GGFR 215 (279)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCcchhHHHhccc-----cchh
Confidence 88999999999999999 578889999996553 456777788888888888777763333444333 3333
Q ss_pred HHHHhcH--HHHHhcccCchhhh-hhhhhhccChhHHHHHHHHHHhhhcchh--HHHHHHcC
Q 014863 349 IISTQGM--LAVYNSFSGEDKKE-FEKAYSASYYPCMEILYECYEDVAAGSE--IRSVVLAG 405 (417)
Q Consensus 349 li~e~G~--~~l~~~vs~~~~~~-~~~~~~~~~~~~~~~m~~~~~~v~~g~~--~~~~~~~~ 405 (417)
++.+--- ..||..++.-|+.. ... -...++.+.++.+.|+++.. ..++..+.
T Consensus 216 d~tRia~~~P~m~~dI~~~N~~~~l~~-----i~~~~~~l~~l~~~i~~~d~~~l~~~~~~a 272 (279)
T COG0287 216 DITRIASSDPEMYADIQLSNKEALLEA-----IERFAKSLDELKELIENGDAEALADLFEEA 272 (279)
T ss_pred hHHHHHcCChHHHHHHHHhCcHHHHHH-----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2221111 33444444222210 111 12344566677777777774 34444433
No 22
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.78 E-value=5.2e-18 Score=166.17 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=133.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||+|||+|+||+++|+.|++. |++|++++++ ....+.+.+.|... . ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~-~~~~~~a~~~g~~~--~-~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRR-ESTCERAIERGLVD--E-ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHCCCcc--c-ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999999 9888766654 55677777778652 1 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014863 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 192 ~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sg 271 (417)
.++++++.++++++.+|+++++++...++..... ...+|..||... +. ...++.|......|.++++++..+.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HPm~G-~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHPMAG-TA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCCcCC-CC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 9999999999999999999999885544321111 125999999321 11 011222222223468888999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHH
Q 014863 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 272 ea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea 319 (417)
++.+.+..++..+|. ++++.+..+| | ....+++.+|.++-.
T Consensus 146 ~~~~~v~~l~~~lG~-~~v~~~~~~h---D---~~~a~~shlp~~~a~ 186 (279)
T PRK07417 146 NALAIVEELAVSLGS-KIYTADPEEH---D---RAVALISHLPVMVSA 186 (279)
T ss_pred HHHHHHHHHHHHcCC-EEEEcCHHHH---H---HHHHHHcchHHHHHH
Confidence 999999999999996 4545554455 3 335566777775553
No 23
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.78 E-value=3.5e-17 Score=170.52 Aligned_cols=199 Identities=17% Similarity=0.173 Sum_probs=151.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|||+||| +|+||.++|+.|++. |++|++..++.....+.+.+.|+.. ..+..+++.++|+||+|+|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999999 9988877776444446677778753 4577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
..++++++.|+++++++|+++++++ ...+.. .+|.+.+||..||.. |+.. ..| .|..+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-ccc--------CCCEEEEecCC
Confidence 9999999999999999999888764 334443 456688999999842 2221 112 34566788888
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
+.+.+..+.+..++..+|. +++.++.++|++.- +..++..+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~-~v~~~~~e~HD~~~-----a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGA-RVIVTSPEEHDRIM-----SVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 7888999999999999996 45566666663332 334555555667778888889999998876654
No 24
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.77 E-value=3.4e-17 Score=159.85 Aligned_cols=196 Identities=17% Similarity=0.144 Sum_probs=137.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
+||+|||+|+||+++|++|++. |+ +|++.++ +....+.+.+.|+... ..+.+++. ++|+||+|+|++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~-~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDH-NELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcC-CHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999998 75 5554444 4555667777887521 34666765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCC------chhhHHHHHhhcccccCCCceEEE
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
...+++.++.+ ++++++|++++..+....+...-. ...+||+.||+. |.....++| .|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 999999988766553222210001 125799999974 434333444 3567778
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
++..+.+.+..+.+..++..+|. +++.++.++|+..- +.+++..+.+.-++.+.+. .+.+++....
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~-----a~vs~lph~~a~~l~~~~~-~~~~~~~~~~ 204 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHA-----AYISHLPHIISFALANTVL-KEEDERNIFD 204 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-hcCChHHHHh
Confidence 88877888899999999999995 56666666664332 2345555556666666664 4666555434
No 25
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.74 E-value=1.6e-16 Score=157.38 Aligned_cols=186 Identities=18% Similarity=0.223 Sum_probs=137.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
++|+|||+|+||.++++.|++. |+ +|++++++ ....+.+.+.|+.. ....+.+++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 75 66666554 44567777777641 12456778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCC------chhhHHHHHhhcccccCCCceEEE
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~------pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
...++++++.++++++.+|+++++++...++......+.+++++..||.. |+....++| .|.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~--------~g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELF--------ENRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHH--------CCCeEEE
Confidence 99999999999999999999988876433322111345677899999954 222223444 3467888
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~ 321 (417)
++....+.++.+.+..++..+|.. ++..+.++| +.++.+.+.+|.++-.++
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG~~-~~~~~~~~h------D~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALGAR-VEEMDPEHH------DLVLAITSHLPHLIAYTI 200 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH------hHHHHHHhhHHHHHHHHH
Confidence 888878888999999999999964 444433344 356788899998765544
No 26
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.73 E-value=3.8e-18 Score=176.79 Aligned_cols=104 Identities=16% Similarity=0.256 Sum_probs=91.8
Q ss_pred cccccccccchHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChh
Q 014863 302 IFGERGILLGAVH-GIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYP 380 (417)
Q Consensus 302 lfgeqtvL~G~~~-a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~ 380 (417)
-|=++++|+|.+. +.+++.||++|++||+||.||+|++|+++ +|+|||+|+|+.+|+++|| +|||||+|.. ...
T Consensus 352 ~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~--g~~ 426 (487)
T PRK05225 352 EYFDKGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLF--SHA 426 (487)
T ss_pred HHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCccc--ChH
Confidence 3448899999876 68999999999999999999999999997 9999999999999999999 7889999744 244
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHcCCccccc
Q 014863 381 CMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 381 ~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
+.+.|+++|++||+|+|+|+| .+++...++
T Consensus 427 vi~~mk~~l~~Iq~G~fak~~-~e~~~g~~~ 456 (487)
T PRK05225 427 AVPLLKDFMATLQPGDLGKGL-PSNAVDNAQ 456 (487)
T ss_pred HHHHHHHHHHHcCCCHHHhhH-HhccCCcHH
Confidence 558999999999999999999 777766443
No 27
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.72 E-value=2.3e-16 Score=173.07 Aligned_cols=222 Identities=15% Similarity=0.129 Sum_probs=161.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
+||+|||+|+||.++++.|+.. |+ +|++++++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999998 73 66665554 44466777788751 12456788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchh--h-------HHHHHhhcccccCC
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGP--S-------VRRLYVQGKEINGA 257 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~--~-------vr~ly~~G~e~~G~ 257 (417)
...++++++.++++++.+|+++++++ +..++. .++. ..++++||.|.. . ...+|+
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~~g~~~a~~~l~~-------- 141 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEKSGVHAANADLFR-------- 141 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCcchhhhhhhHHhC--------
Confidence 98999999999999999999999987 444443 3332 134555555521 2 123333
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHHcCCCHHHHHH
Q 014863 258 GINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 258 Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~~Gl~~e~A~~ 336 (417)
|.++++++....+.++.+.+..++..+|.. ++..+ + +.++..++++|++|+ +.-++.+.+.+.|.. ..+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~-~~~~~---~---~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~ 213 (735)
T PRK14806 142 NHKVILTPLAETDPAALARVDRLWRAVGAD-VLHMD---V---AHHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFR 213 (735)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHh
Confidence 356678888888999999999999999963 33332 2 344567889999999 677777888777764 46889
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHhcccCc
Q 014863 337 NTVECITGIISKIISTQGMLAVYNSFSGE 365 (417)
Q Consensus 337 ~~~~~l~~~~~~li~e~G~~~l~~~vs~~ 365 (417)
++.+.+. +++++. .+.-...+|.++++
T Consensus 214 ~a~~~f~-~~tRia-~~~p~~~~di~~~n 240 (735)
T PRK14806 214 YAAGGFR-DFTRIA-ASDPVMWHDIFLAN 240 (735)
T ss_pred hhccchh-cccccc-cCCHHHHHHHHHHh
Confidence 8888887 777777 33445556666554
No 28
>PLN02256 arogenate dehydrogenase
Probab=99.69 E-value=5.4e-16 Score=154.72 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=127.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavp 187 (417)
++ ++|+|||+|+||+++|+.|++. |++|++.+++. ..+.+.+.|+.. ..+.++++ .++|+|++|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 44 8999999999999999999988 88887666653 245666778764 46777776 47999999999
Q ss_pred chhHHHHHHHH-HhcCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 188 d~a~~~Vl~eI-~p~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+....++++++ .++++++++|+++.+++ +..+.. .++.+.+||++||+.+...-... -.+.+.++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~--------~~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGG--------WAGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCccc--------cCCCeEEE
Confidence 99999999998 78899999999888764 344444 55667899999998754431111 23466655
Q ss_pred eec----CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 014863 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (417)
Q Consensus 264 av~----qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~ 300 (417)
++. .+.+.++.+.++.++..+|+ ++++.+.++|++.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 542 45577899999999999994 6888899999655
No 29
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.69 E-value=3.9e-16 Score=151.84 Aligned_cols=193 Identities=19% Similarity=0.197 Sum_probs=132.4
Q ss_pred HHHHHHhhhhhhcCC--ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCC
Q 014863 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (417)
Q Consensus 126 iA~~Lr~s~~~~~~G--~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk 203 (417)
+|+.|+.+ | ++| ++.+.+....+.|++.|+.. .. .+..++++++|+||||+|+....++++++.|+++
T Consensus 1 ~A~aL~~~------g~~~~v-~g~d~~~~~~~~a~~~g~~~--~~-~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVEV-YGYDRDPETLEAALELGIID--EA-STDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSEE-EEE-SSHHHHHHHHHTTSSS--EE-ESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeEE-EEEeCCHHHHHHHHHCCCee--ec-cCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57889888 7 454 56777777889999999984 22 2336789999999999999999999999999999
Q ss_pred CCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 014863 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (417)
Q Consensus 204 ~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~a 283 (417)
+|++|+|+++++...++...-.+|.+++||.+|| +.|+. ...|...+.....|.++++++..+.+.++.+.+++++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999974322221125567899999999 33442 122223333445689999999998888999999999999
Q ss_pred hCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014863 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 284 iG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
+|+ +++..+.++|++.- +.+++..+.+.-++...+.+.+.+......
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~~~~~ 195 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDPDILR 195 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChHHHHh
Confidence 996 68888999997664 334555666666666666655544444444
No 30
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.66 E-value=3.7e-15 Score=152.46 Aligned_cols=154 Identities=15% Similarity=0.099 Sum_probs=116.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||+|||+ |+||+++|+.|++.. +++|+ +.+.. ..+ ..+.++++++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-----~~~V~-g~D~~--------d~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-----QLEVI-GHDPA--------DPG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-----CCEEE-EEcCC--------ccc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 999999999999741 66765 44431 111 2467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecC
Q 014863 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~p~---Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~q 267 (417)
..++++++.|+ +++|++|+|+++++-..++. ..+.+.+||..||. .|+....+ .+|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HPM-aG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHPM-TAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCCC-CCCCCCcc--------cCCCeEEEeCCC
Confidence 99999999876 89999999999998443322 12335679999993 34432112 357898888664
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhh
Q 014863 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (417)
Q Consensus 268 d~sgea~e~a~al~~aiG~~~~iett~~~E~~~d 301 (417)
..+..+.++.|+..+|+ ++++++.++|++.-
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~~ 162 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRVM 162 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHHH
Confidence 34557889999999995 68888999996654
No 31
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=2.4e-14 Score=141.68 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=142.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----cCceecC----------CCcCCHHhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d----------~~~~~~~Ea 175 (417)
|+||+|||+|+||.++|..|... |++|++.++.. +..+.+.+ .|....+ ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999998 99888776543 33333332 1210000 013567788
Q ss_pred hccCCeEEEeecchh--HHHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 176 v~~ADiViLavpd~a--~~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|...
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~--------- 144 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV--------- 144 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc---------
Confidence 999999999999876 457888898888888776 5778888776655 3444458999999999765
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccc-hHHHHHHHHHHHHHHcCCCH
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRFTENGMNE 331 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G-~~~a~iea~~~~~v~~Gl~~ 331 (417)
+. .. .+++....+.+..+.+..++..+|...++ .+.+.. +.++. ...+++.-+...+.+.|+++
T Consensus 145 ---~~-l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~-----~~~d~~-----G~i~nr~~~~~~~Ea~~l~~~g~~~~ 209 (311)
T PRK06130 145 ---IP-LV-EVVRGDKTSPQTVATTMALLRSIGKRPVL-----VKKDIP-----GFIANRIQHALAREAISLLEKGVASA 209 (311)
T ss_pred ---Cc-eE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEE-----EcCCCC-----CcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 12 22 35567778899999999999999964211 110111 11222 22334444455556777899
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHhcHHHHH
Q 014863 332 DLAYKNTVECIT-----GIISKIISTQGMLAVY 359 (417)
Q Consensus 332 e~A~~~~~~~l~-----~~~~~li~e~G~~~l~ 359 (417)
++......+..- .|.-.++...|++.++
T Consensus 210 ~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~ 242 (311)
T PRK06130 210 EDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHL 242 (311)
T ss_pred HHHHHHHHhcCCCCccCCCHHHHhhhhccchHH
Confidence 888876543320 1555666666764433
No 32
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.63 E-value=2.5e-14 Score=146.37 Aligned_cols=246 Identities=9% Similarity=0.030 Sum_probs=154.6
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 110 g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
.+++|+||| +|.||+++|+.|++. |+.|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 99887776531 11456788999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
....++++++.+ +++|++|+++++++. ..+.. ..+. +||..||...... .+ ..|...+ +
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~~--~fvg~HPm~G~~~------~~----~~~~~vv--~ 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHSG--PVLGLHPMFGPDV------GS----LAKQVVV--V 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCCC--CEEeeCCCCCCCC------cc----cCCCEEE--E
Confidence 999999999999 999999999988753 23322 2222 6999999543221 11 1233333 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG- 344 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~- 344 (417)
....+.++.+.+..++..+|. +++..+.++|+..- +.+++..+.+.-++...+.+.|.+.+.....+.-....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~~fr~~ 288 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQALRHFATFAYGLHLAKENVDLEQLLALSSPIYRLE 288 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcChHHHHH
Confidence 334466788999999999995 67888888886553 22344444445555666666888877654432211110
Q ss_pred --HHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHHHHHhhhcch--hHHHHHHcCCcccc
Q 014863 345 --IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGS--EIRSVVLAGRRFYV 410 (417)
Q Consensus 345 --~~~~li~e~G~~~l~~~vs~~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~g~--~~~~~~~~~~~~~~ 410 (417)
.+..+. ++=..||..+...|+..= + .-+...+.+.++.+.|++|+ ...+++.+.+++|-
T Consensus 289 la~~tRia--~~~p~lw~dI~~~N~~~~-~----~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~~~~ 351 (374)
T PRK11199 289 LAMVGRLF--AQDPQLYADIIMSSPENL-A----LIKRYYQRFGEALELLEQGDKQAFIDSFRKVEHWFG 351 (374)
T ss_pred HHHHHHHH--cCCHHHHHHHHHhChhHH-H----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 011111 011334444332221111 1 01233455666777776663 34666666666654
No 33
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.61 E-value=7.8e-14 Score=141.42 Aligned_cols=251 Identities=12% Similarity=0.161 Sum_probs=157.3
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCceEEEEecCCch----hHHHHHHcCceecCC
Q 014863 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~ 167 (417)
+||.|.|.||| |.++|.+|.+. |++|++++++... .++...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 46777777776 88999999999 9999888876431 345566778764
Q ss_pred CcCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccchhh----hhhccccCCCCCCcEEEeccCCchh
Q 014863 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG----HLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~i~----~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..+..++++++|+||+++|+.. ..++++++.+++++|++|++++.+... .+.. .++.....++++|..|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5688899999999999999988 578999999999999998887765432 2222 222222334454544444
Q ss_pred hHHHHHhhcccccCCCceEEE-----eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH--
Q 014863 243 SVRRLYVQGKEINGAGINSSF-----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-- 315 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~li-----av~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-- 315 (417)
.. |.+ +.+.. ++ +.....+.++.+.+..++..+|.. ++... + +.......+...+.+
T Consensus 148 v~------Gae--~g~l~-Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~ 211 (342)
T PRK12557 148 VP------GTP--QHGHY-VIAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVA 211 (342)
T ss_pred cc------ccc--cchhe-EEeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHH
Confidence 31 100 11222 12 123345788999999999999963 23221 1 222221111222222
Q ss_pred ---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCc---hhh---hhhhhhhccChhHHHHH
Q 014863 316 ---IVESLFRRFTENGM-NEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGE---DKK---EFEKAYSASYYPCMEIL 385 (417)
Q Consensus 316 ---~iea~~~~~v~~Gl-~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs~~---~~~---~~~~~~~~~~~~~~~~m 385 (417)
..| .+..+.+.|. +++++.+.+.|++. ++++|+.++|++.|-+.+... .++ .|++.- ..-....+++
T Consensus 212 ~a~~aE-~~~l~~~~~~~p~~~~~~~~~~~~~-~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 288 (342)
T PRK12557 212 LSGVLD-YYSVGTKIIKAPKEMIEKQILMTLQ-TMASLVETSGVDGLLKALNPELLLRSASSMHLLEKQ-KDLDAALEIL 288 (342)
T ss_pred HHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhh-hhHHHHHHHH
Confidence 223 3344445555 55666777889998 999999999999998877522 111 233310 0122345788
Q ss_pred HHHHHhhhc
Q 014863 386 YECYEDVAA 394 (417)
Q Consensus 386 ~~~~~~v~~ 394 (417)
+++++++..
T Consensus 289 ~~~~~~~~~ 297 (342)
T PRK12557 289 ENLDEDLLK 297 (342)
T ss_pred HHHHHHHhh
Confidence 888888743
No 34
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.57 E-value=1.4e-14 Score=143.33 Aligned_cols=146 Identities=26% Similarity=0.265 Sum_probs=108.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
+||+|||+|+||.+||+||.+. |+.+.+++|..++..+.+.+.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999999888
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeccchhh-------hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 192 A-DNYE---KIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 192 ~-~Vl~---eI~p~Lk~GaiL~~a~G~~i~-------~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
. +|+. .+.+.+++|+++++++-+... .++..++.. -|.+|...-| +.. .|.-
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~-lDAPVsGg~~---~A~-------------~GtL 133 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF-LDAPVSGGVP---GAA-------------AGTL 133 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE-EecCccCCch---hhh-------------hCce
Confidence 6 6773 599999999999998876422 122211111 1223333322 111 2333
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
. |-+.. +.++.+.++-++..+|..
T Consensus 134 t-imvGG--~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 134 T-IMVGG--DAEAFERAKPVLEAMGKN 157 (286)
T ss_pred E-EEeCC--CHHHHHHHHHHHHHhcCc
Confidence 3 22344 678889999999999963
No 35
>PLN02712 arogenate dehydrogenase
Probab=99.57 E-value=1.4e-13 Score=150.46 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=132.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiViL 184 (417)
..+++ +||||||+|+||+++|++|++. |++|+++++.. .. +.+.+.|+.. ..+.++++. ++|+||+
T Consensus 365 ~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~~-~~a~~~Gv~~----~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 365 NDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-YS-DEAQKLGVSY----FSDADDLCEEHPEVILL 431 (667)
T ss_pred CCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-HH-HHHHHcCCeE----eCCHHHHHhcCCCEEEE
Confidence 34566 8999999999999999999998 98887776653 22 5566778763 567888775 5999999
Q ss_pred eecchhHHHHHHHHHh-cCCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 185 LISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p-~Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
|||+....++++++.+ .+++|++|+++++.+ +..+.. .+|.+++||+.||+.....-+..|+. ......|..
T Consensus 432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~ 507 (667)
T PLN02712 432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVR 507 (667)
T ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcE
Confidence 9999999999998876 789999999887663 344443 56778899999997754431111111 000011111
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~ 330 (417)
........+..+..+.++..+|+ ++++++.++|++.-. ..+ .+|- .+...+++.|++
T Consensus 508 ---v~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~~A-----~vS-hLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 508 ---IGSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWHAA-----GSQ-FITH---TMGRLLEKLGLE 564 (667)
T ss_pred ---eCCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHHHH-----HHH-HHHH---HHHHHHHHCCCc
Confidence 11222233556667899999995 788899999964321 122 2222 334667777775
No 36
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.54 E-value=1.5e-12 Score=130.45 Aligned_cols=224 Identities=13% Similarity=0.148 Sum_probs=163.0
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHHHHHcCceecCC
Q 014863 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~ 167 (417)
|||.|-|.||| |.+||++|.++ |++|++++++.+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 56777777776 88999999999 999999887533 2345677788875
Q ss_pred CcCCHHhhhccCCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEeccchh---hh-hhccccC-CCCCCcEEEeccC-Cc
Q 014863 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GH-LQSMGLD-FPKNIGVIAVCPK-GM 240 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i---~~-~~~~~i~-~~~di~VI~v~Pn-~p 240 (417)
+.+..|+++++|+||+++|+..+. +|+..+.+++++|++|++++-+.. ++ ++. .+. -++|+.|...||- -|
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP 149 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVP 149 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCC
Confidence 678999999999999999988875 788889999999999998876642 22 222 122 2579999999993 34
Q ss_pred hhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhcccccccccchHHHH---
Q 014863 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGAVHGI--- 316 (417)
Q Consensus 241 g~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E~~~dlfgeqtvL~G~~~a~--- 316 (417)
+..-.+.|.-+ |... + -..-++.++.++...|.+.+|..- ++. .++.+..+-.|-.+.+.
T Consensus 150 ~~~~~~~~~~~------~~~~-~-~~~~A~ee~i~~~~el~~~~~~~~~~~p--------a~l~~~v~Dm~s~vta~~~~ 213 (341)
T TIGR01724 150 GTPQHGHYVIG------GKPT-A-GKEMATEEQISKCVELAKSTGKKAYVVP--------ADVTSAVADMGSLVTAVALA 213 (341)
T ss_pred CCCCCceeeec------cccc-c-ccccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHHHHHHHHHH
Confidence 44422233332 1221 1 244578899999999999999751 222 25555555455555552
Q ss_pred -HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 317 -VESLFRRF-TENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 317 -iea~~~~~-v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
+-.-++.+ .-.|-|.+.+-+.+.+++. .++.|+.++|++.|-+.+.
T Consensus 214 gil~y~~~~t~i~~ap~~~~~~~~~~~l~-~~a~l~~~~Gi~~~~~~l~ 261 (341)
T TIGR01724 214 GVLDYYYVGTQIINAPKEMIEKQILMTLQ-TMASLVETSGVEGMAKAIN 261 (341)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 33345555 4689999999999999998 9999999999999988775
No 37
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.54 E-value=3.5e-13 Score=131.98 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=116.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH----------HHHHHcCceec--------C-CCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~----------~~A~~~G~~~~--------d-~~~~~ 171 (417)
|+||+|||.|.||.++|..+... |++|++.+++.+... +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 57999999999999999999999 998887665433211 23334442100 0 00234
Q ss_pred HHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
.+ .+++||+||+++|++.. .++++++.++++++++| +.++|+.+..+.. .++..-+++++||+.|.+..
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~---- 148 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM---- 148 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC----
Confidence 44 57999999999998766 57999999999999987 6888998887765 33334489999999998883
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++. ++++...+.+..+.+..++..+|..
T Consensus 149 --------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 --------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred --------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 4564 6678889999999999999999965
No 38
>PLN02712 arogenate dehydrogenase
Probab=99.52 E-value=2.1e-13 Score=149.01 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=121.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~a 190 (417)
++|+|||+|+||+++|++|++. |++|+++++... .+.+.+.|+.. ..+.++++ .++|+|++|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~~--~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSDH--SLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH--HHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 988877666522 35677788764 56777755 57999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee-
Q 014863 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (417)
Q Consensus 191 ~~~Vl~eI~-p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav- 265 (417)
..++++++. +++++|++|+++..++.. .+.. .+|++.+||..||+. |+.. ...| -.|..++++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~ 189 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKV 189 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeec
Confidence 999999886 789999999999887632 2332 456788999999954 4431 0111 1234454542
Q ss_pred ---cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhh
Q 014863 266 ---HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (417)
Q Consensus 266 ---~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~d 301 (417)
+.....+..+..+.+|..+|+ ++++++.++|++.-
T Consensus 190 ~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~~ 227 (667)
T PLN02712 190 RIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKYA 227 (667)
T ss_pred cCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHHH
Confidence 222223556777899999995 78888888886554
No 39
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.48 E-value=3.5e-12 Score=134.97 Aligned_cols=193 Identities=13% Similarity=0.085 Sum_probs=132.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-------------------HcC-ceecCCCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~d~~~~ 170 (417)
++||+|||+|+||.++|.+|... |++|+++++..++. +... ..| +.. ..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~ 72 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAE-RIIGEVLANAERAYAMLTDAPLPPEGRLTF----CA 72 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHH-HHHHHHHHHHHHHHhhhccchhhhhhceEe----eC
Confidence 47999999999999999999999 99998888764432 2111 112 332 46
Q ss_pred CHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
++++++++||+|+.++|++.. ..++.++.++++++.+| +-++|+.+..+.+ .+...-.++..||+.|....
T Consensus 73 ~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~~--- 146 (495)
T PRK07531 73 SLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYLL--- 146 (495)
T ss_pred CHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcccC---
Confidence 788999999999999998874 35778888888888765 3557877766654 33334479999999987651
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHHHHHHH
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~~~~v~ 326 (417)
. .. .++.....+.+..+.+..++..+|...++ .+...+ ..+++.+.+ ++.-++..+.+
T Consensus 147 ---------~-Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~-----~~k~~~-----gfi~nrl~~a~~~EA~~L~~~ 205 (495)
T PRK07531 147 ---------P-LV-ELVGGGKTSPETIRRAKEILREIGMKPVH-----IAKEID-----AFVGDRLLEALWREALWLVKD 205 (495)
T ss_pred ---------c-eE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEe-----ecCCCc-----chhHHHHHHHHHHHHHHHHHc
Confidence 1 22 35567778899999999999999965221 111111 123333332 33444555568
Q ss_pred cCCCHHHHHHHHHHH
Q 014863 327 NGMNEDLAYKNTVEC 341 (417)
Q Consensus 327 ~Gl~~e~A~~~~~~~ 341 (417)
.|+++++.....-+.
T Consensus 206 g~~s~~~id~~~~~g 220 (495)
T PRK07531 206 GIATTEEIDDVIRYS 220 (495)
T ss_pred CCCCHHHHHHHHhhc
Confidence 889999888765544
No 40
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.47 E-value=1.9e-13 Score=112.37 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=73.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---ceEEEE-ecCCchhHHHHHHcCceecCCCcC-CHHhhhccCCeEEEeec
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~-~~~Eav~~ADiViLavp 187 (417)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.+... .. +..|+++++|+|||++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788866 666566667777888654 33 79999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE-Eecc
Q 014863 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~-~a~G 213 (417)
|+...++++++ +...++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777888765 5444
No 41
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.46 E-value=3.5e-13 Score=122.18 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=100.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||||||+|+||.+||++|.++ |++|.+++|.. +..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSP-EKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSH-HHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccch-hhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 78999999999999999999999 99998887764 4456666778876 7899999999999999999866
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~-~~Vl~e--I~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
+ .+++.+ +.+.+++|+++++..-.... .+.+ ..-.+++.+|-.-=.+.... -+. |--.++.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapV~Gg~~~----a~~-------g~l~~~~ 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVDAPVSGGPPG----AEE-------GTLTIMV 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEEEEEESHHHH----HHH-------TTEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeeeeeeeccccc----ccc-------cceEEEc
Confidence 5 579987 99999999999988776532 2222 11134556653322221111 122 3323232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014863 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~ 286 (417)
.. +.++.+.++.++..+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 33 46788999999999985
No 42
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.44 E-value=2.3e-12 Score=126.98 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=111.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceec-------C-CCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N-GTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d-~~~~~ 171 (417)
|+||+|||+|.||.++|++|..+ |++|++.+++.++ .+. ..+.|.... + -...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999999 9998877765332 221 222231100 0 00233
Q ss_pred HHhhhccCCeEEEeec--chhHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavp--d~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
..+++++||+||.|+| ++....++.++.+.++++++|+ .++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 4444578889999999998874 889998877665 33334689999998887651
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
. . ..++++...+.+..+.+..++..+|..
T Consensus 150 --------~-l-veiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 --------K-L-VEIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred --------c-e-EEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1 2 246667788999999999999999965
No 43
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.44 E-value=3.6e-12 Score=120.84 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=109.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCeEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
|||+||| .|+||.+++..|.+. |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 899999999999999 99988887765443333221 13210 001246678899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEE-Eeccchh-----------------hhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i-----------------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
+++|++.+.++++++.+.++. ++|+ .+.|+.. ..+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999998887764 6654 5567764 22333 455546899999999987753
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~ai-G~~ 287 (417)
.. ..+.+...++| .| +.++++.+.+|...+ |..
T Consensus 150 ~~------~~~~~~~~~v~--Gd-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 DV------DDEVDCDVLVC--GD-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred CC------CCCCCCCEEEE--CC-CHHHHHHHHHHHHhcCCCC
Confidence 21 11234444443 33 456999999999999 874
No 44
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.44 E-value=3.4e-12 Score=126.00 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=103.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC--------------ceecCCCcCCHHhhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~d~~~~~~~Eav 176 (417)
|+||+|||+|+||.++|.+|.+. |++|.+++|... ..+...+.| ... ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPE-QAAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 68999999999999999999999 999888777533 334344432 221 45777888
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec-cchh-------hhhhccccCCCC-CCcEEEeccCCchhhHHHH
Q 014863 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSMGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~-G~~i-------~~~~~~~i~~~~-di~VI~v~Pn~pg~~vr~l 247 (417)
+++|+||+++|+....++++++.++++++++|+... |+.. ..+.+ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 999999999999988899999999999998776444 7753 22222 2232 134566778765443
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.|.+.++... ..+.+..+.+..++...|..
T Consensus 143 --------~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 173 (325)
T PRK00094 143 --------ARGLPTAVVIA-STDEELAERVQELFHSPYFR 173 (325)
T ss_pred --------HcCCCcEEEEE-eCCHHHHHHHHHHhCCCCEE
Confidence 12333322222 22567788888899888853
No 45
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.41 E-value=1.7e-11 Score=121.56 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=104.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh---hccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea---v~~ADiViLavpd 188 (417)
|||+|||+|+||.++|++|.+. |++|.+++|+. ...+...+.|... ..+.+++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQ-DAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 99988877664 3455566667653 3455554 4568999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
....++++++.+++++|++|++.+... ...... .-..+++++-....+.....+ .|. + +.
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~---~~~~g~~~vda~vsGg~~~a~-----------~G~-~-~~ 133 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKL---LKEKGIHLLDCGTSGGVWGRE-----------RGY-C-FM 133 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHH---HHhcCCeEEecCCCCCHHHHh-----------cCC-e-ee
Confidence 977899999999999999998876542 111111 223567777755544322211 353 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014863 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~ 286 (417)
+.. +.++.+.+..++..+|.
T Consensus 134 ~gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 134 IGG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred eCC--CHHHHHHHHHHHHHhcC
Confidence 444 57899999999999986
No 46
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.40 E-value=1.5e-11 Score=121.93 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=122.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc---CCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~---ADiViLavpd 188 (417)
++|||||+|+||.++|++|.+. |++|++++|+.+ ..+.+.+.|... ..++++++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4899999999999999999999 999888777643 345556678764 5688888876 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
. ...++++++.+.+++|++|++++.... ..+.+ . .-..+++++- +|=.-+.. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence 8 667899999999999999998866532 22211 0 1123555542 33111111 011 344 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC--cccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSP--FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKNTV 339 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~--~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~G--l~~e~A~~~~~ 339 (417)
+.. +.++.+.++.++..+|.. .++..- .-.-....+. -+.++.+...++.| .+..+.+.| ++++..+..-.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aE-a~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAE-GLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcccCCCHHHHHHHHc
Confidence 454 467889999999999962 111110 0000000110 01111222222333 345667888 99998887654
No 47
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.39 E-value=1.9e-11 Score=121.05 Aligned_cols=200 Identities=14% Similarity=0.107 Sum_probs=124.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
|+||+|||+|+||.++|.+|.+. |++|.+++++.+ ..+...+.|... ..+..++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~-~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQ-AVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 57999999999999999999999 999888777644 455555667653 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+ .+++. .+.+.+++|+++++.+-+... .+.. .....++.++ =+|-.-+.. .-+ .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHH-------hCcEEEE
Confidence 4 56764 477889999998877655432 2211 0112355654 344222211 111 2344333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
+.. +.+..+.+..++..+|.. ++... .-.=....+. .-.+++...+++--.+..+.+.|++++..+.....
T Consensus 137 -~gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~ 208 (296)
T PRK15461 137 -AGG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKVMSG 208 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 233 567899999999999964 22110 0000111111 01122333333333456678999999988765443
No 48
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.38 E-value=5.9e-11 Score=116.78 Aligned_cols=213 Identities=16% Similarity=0.148 Sum_probs=136.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-------------------------Cceec
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------------GFTEE 165 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------------------G~~~~ 165 (417)
|+||+|||.|.||.++|..+..+ |++|+++++..+ ..+.+.+. .+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 48999999999999999999998 999888776533 23333211 1221
Q ss_pred CCCcCCHHhhhccCCeEEEeecch--hHHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~--a~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..+.++++++||+||.++|.+ ...++++++.+.++++++|+ ..+++.+..+.+ ..+..-+++..||--|..
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 457888999999999999966 34578899999999998875 445555554443 222334799999977754
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHH
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~ 322 (417)
. .-..-+.++...+.+.++.+.+++..+|...++-. .+ ...-+..-+...+-.-.-
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-------~pgfi~nRi~~~~~~ea~ 204 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-------QPGYILNSLLVPFLSAAL 204 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-------CCCHhHHHHHHHHHHHHH
Confidence 4 13334566788899999999999999996422111 01 112222222232222223
Q ss_pred HHHHcCC-CHHHHHHHHHH---HHHHHHHHHHHHhcHHHHHhcc
Q 014863 323 RFTENGM-NEDLAYKNTVE---CITGIISKIISTQGMLAVYNSF 362 (417)
Q Consensus 323 ~~v~~Gl-~~e~A~~~~~~---~l~~~~~~li~e~G~~~l~~~v 362 (417)
.+++.|+ ++++--..... .-. |--+++-..|++.+++..
T Consensus 205 ~l~~~g~a~~~~iD~a~~~~~g~~~-Gp~~~~D~~Gld~~~~~~ 247 (287)
T PRK08293 205 ALWAKGVADPETIDKTWMIATGAPM-GPFGILDIVGLDTAYNIT 247 (287)
T ss_pred HHHHcCCCCHHHHHHHHHhccCCCc-CHHHHHHHhchHHHHHHH
Confidence 3577785 46554432211 122 556677777876655544
No 49
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.36 E-value=7.9e-11 Score=117.12 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=125.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (417)
|++|+|||.|.||.++|.+|.++ |++|+++++..+ ..+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999988877633 2232 2244532000 1246
Q ss_pred CHHhhhccCCeEEEeecchh--HHHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a--~~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
+++++++++|+|+.++|+.. ...++.++.+..+++.+|. -+.+..+..+.+ .++..-.++..||-.|....
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3467777777766655443 233444444544 33444579999997765441
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchH-HHHHHHHHHHHHH
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~-~a~iea~~~~~v~ 326 (417)
.. ..++++...+.+..+.+..++..+|... +... .+ ... .++.-+ .+++..++..+.+
T Consensus 149 ----------~l-veiv~~~~t~~~~~~~~~~~~~~lG~~~-v~v~--~~-~~G------~i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PV-VEVVPAPWTAPATLARAEALYRAAGQSP-VRLR--RE-IDG------FVLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCEE-EEec--CC-Ccc------HHHHHHHHHHHHHHHHHHHc
Confidence 11 2356677788899999999999999642 2110 11 111 122222 2344445556667
Q ss_pred cCCCHHHHHHHHH
Q 014863 327 NGMNEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|+++++......
T Consensus 208 g~~~~~~id~~~~ 220 (308)
T PRK06129 208 GVASVDDIDAVIR 220 (308)
T ss_pred CCCCHHHHHHHHH
Confidence 7799998877543
No 50
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.36 E-value=6.5e-11 Score=116.44 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cC-------------ceecC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G-------------~~~~d 166 (417)
|+||+|||.|.||.++|.+|.++ |++|+++++..+ ..+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 57999999999999999999999 999888776533 3333221 11 121
Q ss_pred CCcCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
..+.++++++||+||.|+|.+... .++.++.++++++++| +..+.+.+..+.+ ......+++.+|+-.|.+.
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 357788999999999999988753 5778899999999877 4667777665544 2222236788888766433
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 244 vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+--..++.+...+.+..+.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 123345667778899999999999999964
No 51
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.36 E-value=2.6e-11 Score=120.30 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=125.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
|||+|||+|+||.+|+++|.+. |++|.++++.. + .+...+.|... +.+..|+++++|+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99888877653 2 34455677764 56888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 192 -ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 -~~Vl~---eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
.+++. .+.+.+++|++|++++..... .+.+ ..-..++.++- +|-.-+.. ..+. |-..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 46763 377788999999998877533 1211 11134677776 57333332 2233 3333232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
.. +.+..+.++.++..+|... +..- .-.=....+. -+..+.....++.|++ ..+.+.|++++..+..
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~~-~~~G~~G~g~~~Kl~-~N~l~~~~~~a~~Ea~-~la~~~Gld~~~~~~~ 203 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKNI-TLVGGNGDGQTCKVA-NQIIVALNIEAVSEAL-LFASKAGADPVRVRQA 203 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCCc-EEeCCccHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHH
Confidence 33 5688999999999999642 1111 0011111111 1222222233344543 4568899999988853
No 52
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.32 E-value=4.9e-11 Score=117.48 Aligned_cols=152 Identities=17% Similarity=0.238 Sum_probs=111.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--------------cCceecC---------C
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--------------~G~~~~d---------~ 167 (417)
++||+|||+|.||.++|..|..+ |++|++.+++. +..+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE-EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 99988776653 33332211 1211000 0
Q ss_pred CcCCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhH
Q 014863 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 168 ~~~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (417)
...+. +++++||+||+++|++.. .++++++.++++++++|+ -++|+.+..+.+ .++..-+++.+||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12344 678999999999998864 578889999999998764 667887776654 33344589999999998873
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 245 r~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++. +..++.++.+..+.+..++..+|..
T Consensus 152 ------------~~vE--v~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIE--VVRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2344 2368888999999999999999964
No 53
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.32 E-value=6.5e-11 Score=116.35 Aligned_cols=193 Identities=17% Similarity=0.146 Sum_probs=122.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHH
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~ 192 (417)
||+|||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+.++++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 99988777654 4456666777764 567889999999999999987654
Q ss_pred -HHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEee
Q 014863 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 193 -~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
.++ +.+.+.+++|++|++.+..... .+.+ ....++++++- +|-. +... ... .|...++ +
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~-~ 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIM-V 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEE-e
Confidence 455 3477888999999887665432 2222 01123667776 5722 1110 011 2343333 3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccc-cchHHH-H---HHHHHHHHHHcCCCHHHHHHHHH
Q 014863 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-I---VESLFRRFTENGMNEDLAYKNTV 339 (417)
Q Consensus 266 ~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL-~G~~~a-~---iea~~~~~v~~Gl~~e~A~~~~~ 339 (417)
.. +.+..+.+..++..+|.. ++..- .... ++..-| ...+.+ . +--++..+.+.|+++++.+...-
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g---~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVG---GNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 43 468889999999999964 22111 0000 000111 111221 2 22245566799999998886443
No 54
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.31 E-value=1.6e-11 Score=122.80 Aligned_cols=194 Identities=16% Similarity=0.100 Sum_probs=116.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--------CceecC--CCcCCHHhhhccCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~Eav~~AD 180 (417)
+|||+|||+|+||.++|.+|.+. |++|.++.|.... .+...+. |..... ....+++|+++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD 76 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGAD 76 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCC
Confidence 37999999999999999999999 9999888875332 2333322 311000 01457888899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch-----hhhhhcccc--CCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~-----i~~~~~~~i--~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|++++|+....++++ .++++.+|+ .+.|+. ...+.+ .+ ....+ -.++..|+.+...
T Consensus 77 ~Vi~~v~~~~~~~v~~----~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~-~~~~~gP~~a~~~--------- 141 (328)
T PRK14618 77 FAVVAVPSKALRETLA----GLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQAR-VAVLSGPNHAEEI--------- 141 (328)
T ss_pred EEEEECchHHHHHHHH----hcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCC-eEEEECccHHHHH---------
Confidence 9999999997766664 456676654 666764 222221 00 00122 2457788776655
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccc---------cccchHHH--------
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG---------ILLGAVHG-------- 315 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqt---------vL~G~~~a-------- 315 (417)
+.|.+.+... ...+.+..+.+..++...|....+ ..|..+.+- +-+|.+.+
T Consensus 142 ---~~~~~~~~~~-~~~~~~~~~~v~~ll~~~~~~v~~--------~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~ 209 (328)
T PRK14618 142 ---ARFLPAATVV-ASPEPGLARRVQAAFSGPSFRVYT--------SRDRVGVELGGALKNVIALAAGMVDGLKLGDNAK 209 (328)
T ss_pred ---HcCCCeEEEE-EeCCHHHHHHHHHHhCCCcEEEEe--------cCCccchhhhHHHHHHHHHHHHHHHHhCCCccHH
Confidence 2444432222 223567788889999888854111 113333221 11333333
Q ss_pred ------HHHHHHHHHHHcCCCHHHHHHHH
Q 014863 316 ------IVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 316 ------~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
.+.-+...+.+.|++++..+..+
T Consensus 210 ~~~~~~~~~E~~~la~~~G~~~~~~~~~~ 238 (328)
T PRK14618 210 AALITRGLREMVRFGVALGAEEATFYGLS 238 (328)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccchhcCc
Confidence 23335667788899998887753
No 55
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.31 E-value=3.4e-11 Score=119.37 Aligned_cols=198 Identities=16% Similarity=0.103 Sum_probs=124.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc---CCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~---ADiViLavpd 188 (417)
|||||||+|+||.++|++|.+. |++|.+++++.+ ..+.+.+.|... ..+++|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999999 999888777643 345556678775 5678888875 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEe
Q 014863 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~lia 264 (417)
. ...++++.+.+.+++|+++++.+.... ..+.+ ..-..++.++- +|-.=+... =+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-eEE-
Confidence 8 557888889999999998887754432 11211 11134677774 774333221 01 344 333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC---cccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 014863 265 VHQDVDGRATNVALGWSVALGSP---FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTE--NGMNEDLAYKNT 338 (417)
Q Consensus 265 v~qd~sgea~e~a~al~~aiG~~---~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~--~Gl~~e~A~~~~ 338 (417)
+.. +.+..+.++.++..+|.. .++..- .-.-...++. .+.++.+.+.++.| ++..+.+ .|++++..+..-
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~-~n~l~~~~~~~~aE-a~~l~~~~~~gld~~~~~~~~ 210 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMV-HNGIEYGMMQAYAE-GFELLEASRFDLDLAAVAEVW 210 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHHH
Confidence 343 567889999999999962 111110 0000001111 11222222222333 3445566 999999887754
Q ss_pred H
Q 014863 339 V 339 (417)
Q Consensus 339 ~ 339 (417)
-
T Consensus 211 ~ 211 (301)
T PRK09599 211 R 211 (301)
T ss_pred h
Confidence 3
No 56
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.30 E-value=5.8e-11 Score=125.78 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=104.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhcc---CCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~---ADiViL 184 (417)
+.+|||||+|+||.+||+||.+. |++|.|++|+.++..+.... .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999875554433321 14320 0014688888876 999999
Q ss_pred eecchhHH-HHHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~a~~-~Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
++|+.... +|++.+.|.|++|++|++.+-... ....+ ..-.++++++- +|=.=+... =+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~g---A~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEEG---AR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHHH---hc-------CCC-
Confidence 99988775 688889999999999998865432 11111 11134666553 441111110 01 344
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+ +-+.. +.++.+.++-++..+|..
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 568999999999999963
No 57
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.29 E-value=1.3e-10 Score=117.40 Aligned_cols=229 Identities=13% Similarity=0.123 Sum_probs=134.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC---------ceecC--CCcCCHHhhhccC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~d--~~~~~~~Eav~~A 179 (417)
++||+|||.|+||.++|..|.+. | +++++.+. +...+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 48999999999999999999998 8 45555554 22233333322 11000 0134677889999
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchh-------hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i-------~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
|+||+++|++...++++++.|++++++ +|+...|+.. ..+.+ .+|.....+...|+.+..+
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998886 4568888864 24443 3343334678889887655
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH---HHHHHHHHHHHcC
Q 014863 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENG 328 (417)
Q Consensus 252 ~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a---~iea~~~~~v~~G 328 (417)
+.|.++.+.+..+ +.+..+.+.+++..-|. ......|+.+.+ ++|.+-- +.-.+.+ +...|
T Consensus 148 ----~~g~~t~~via~~-~~~~~~~v~~lf~~~~~--------~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g 211 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQHLATRLSPLFRTRRF--------RVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIG 211 (341)
T ss_pred ----HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCE--------EEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCC
Confidence 3566654433332 34444454555544442 223344666655 6777665 2222333 33445
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHH--------HHhcHHHHHhcccCc--hhhhhhhhhh
Q 014863 329 MNED-LAYKNTVECITGIISKII--------STQGMLAVYNSFSGE--DKKEFEKAYS 375 (417)
Q Consensus 329 l~~e-~A~~~~~~~l~~~~~~li--------~e~G~~~l~~~vs~~--~~~~~~~~~~ 375 (417)
-... ......++|+. -+++.+ .-.|++.|.--|+++ ....||..+.
T Consensus 212 ~n~~aali~~~~~E~~-~~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~ 268 (341)
T PRK12439 212 ENTRAMVIARALREMT-KLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLG 268 (341)
T ss_pred chHHHHHHHHHHHHHH-HHHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHH
Confidence 3222 22333444544 233222 124456666667664 2245666544
No 58
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.29 E-value=2.1e-10 Score=112.82 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=120.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+++|+|||+|.||.++|++|.+. |++|++++++ ....+.+.+.|... +.+.+|+++++|+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 9988776655 34455566677664 5678899999999999999877
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~-~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+. .++ +++.+.+++|++|++++.+... .+.+ .....+++++- +|-.-+... -. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~--~~~~~g~~~~d-~pv~g~~~~---a~-------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA--ALKAKGIEMLD-APVSGGEPK---AI-------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-cCCCCCHHH---Hh-------hCcEEEE
Confidence 64 455 4588899999999988776532 2222 01112444432 241111110 00 2333333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
. .. +.+..+.+..++..+|.. ++... ...=....+. ....+.+.. +++--++..+.+.|+++++.+...
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~-~~~~g~~g~a~~~Kl~-~n~~~~~~~-~~~~Ea~~l~~~~Gi~~~~~~~~l 207 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGS-VVHTGDIGAGNVTKLA-NQVIVALNI-AAMSEALVLATKAGVNPDLVYQAI 207 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-eEEeCCcCHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 468889999999999964 22110 0000000011 111111111 233334666788999999877543
No 59
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.26 E-value=2.1e-10 Score=113.00 Aligned_cols=193 Identities=18% Similarity=0.121 Sum_probs=122.4
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH-HHH
Q 014863 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~-~~V 194 (417)
|||+|+||.++|++|.+. |++|.+++|+.+ ..+...+.|... ..++.++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999888877644 456666678764 56889999999999999998554 678
Q ss_pred H---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCC
Q 014863 195 Y---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 195 l---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
+ +++.+.+++|++|++.+++... .+.+ .....+++++-. |=.-+. ...+. |-..+++ ..
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~--~~~~~g~~~vda-Pv~Gg~---~~a~~-------g~l~~~~-gg- 134 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAE--LAAAHGAVFMDA-PVSGGV---GGARA-------GTLTFMV-GG- 134 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEEC-CCCCCH---HHHhh-------CcEEEEE-CC-
Confidence 7 6788999999999998887643 2222 111246677653 522221 12233 3333333 33
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014863 269 VDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (417)
Q Consensus 269 ~sgea~e~a~al~~aiG~~~~iett-~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~ 338 (417)
+.+..+.+..++..+|.. ++..- ...-....+. .+..+.+...++.| .+..+.++|++++..+...
T Consensus 135 -~~~~~~~~~~~l~~~g~~-~~~~g~~g~g~~~Kl~-~n~~~~~~~~~~~E-a~~la~~~Gld~~~~~~~~ 201 (288)
T TIGR01692 135 -VAEEFAAAEPVLGPMGRN-IVHCGDHGAGQAAKIC-NNMLLGISMIGTAE-AMALGEKLGLDPKVLFEIA 201 (288)
T ss_pred -CHHHHHHHHHHHHHhcCC-eEeeCCCCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 457788899999999964 22111 0000111111 11111222222333 3456789999999887643
No 60
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.25 E-value=3e-10 Score=119.87 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=102.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhc---cCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~---~ADiViL 184 (417)
|.+|||||+|+||.++|+||.++ |++|.+++|+.++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999888875543332221 25321 12568888886 5899999
Q ss_pred eecchhH-HHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~a~-~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
++|+... .++++++.|+|++|++|++.+... .....+ ...++++++-+-=.+ |.. .-+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fldapVSG-G~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLGMGVSG-GEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEcCCCCC-CHH---HHh-------cCC
Confidence 9877655 579999999999999999886432 111111 223566665432222 111 111 243
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+ +-+.. +.++.+.++-++..+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 578999999999999963
No 61
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.25 E-value=2.2e-10 Score=112.85 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=109.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d---------~~~~ 170 (417)
++||+|||.|.||.++|.+|..+ |++|+++++... ..+.+.+ .|..... ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 999988776533 2333221 2321000 0134
Q ss_pred CHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
++ +.+++||+||.++|...+ ..++.++.+.++++++|+ .++++.+..+.+ .....-+++.+|+--|.+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 55 457899999999997644 467889999999999875 778888776655 22223478888887776652
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.++ - +.++...+.+..+.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 223 2 4557778899999999999999964
No 62
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.25 E-value=2e-10 Score=121.16 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=103.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---C--ceecCCCcCCHHhhh---ccCCeEEE
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~d~~~~~~~Eav---~~ADiViL 184 (417)
+|||||+|+||.+||+||.+. |++|.+++|+.++. +...+. | +.. ..++++++ +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~-~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKT-DEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHH-HHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 99999888875544 333333 2 332 45677766 46899999
Q ss_pred eecch-hHHHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 185 LISDA-AQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~-a~~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
++|+. +..++++++.|+|++|++|++.+... ...... .-.+++.++-....+-....+ .|.
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsGG~~gA~-----------~G~ 135 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSGGEEGAR-----------KGP 135 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCCCHHHHh-----------cCC
Confidence 99984 55689999999999999999887532 111111 224577877666655332221 343
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+ +-+.. +.++.+.++-++..++..
T Consensus 136 -~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 -S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 3 33454 568999999999999963
No 63
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.24 E-value=1.7e-11 Score=108.31 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||+|||.|+.|.++++.|.+. |+.|...+.++..+.+++.+. .. +....+.+|+++++|+|+|+|||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 7999999999999999999999 997654443333344444432 11 12255778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEeccch-hhhhhccccCCCCCCcEEEecc
Q 014863 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (417)
Q Consensus 192 ~~Vl~eI~p~--Lk~GaiL~~a~G~~-i~~~~~~~i~~~~di~VI~v~P 237 (417)
.++.++|... .++|++|+.++|-. ...++- .-..+..+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999998853 332221 0023556667776
No 64
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=108.83 Aligned_cols=155 Identities=20% Similarity=0.168 Sum_probs=105.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
||+|+|||.|+||.++|+.|.+. |++|+++.++.+++.+.+. +.+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 9999999887665554433 334332 1568999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecc-----ch-------------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHG-----FL-------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G-----~~-------------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
.+.++++++...+. |++|+++.- +. -..+++ .+|.. +||..-=+.+.... +.+
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~l----~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAVL----ADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHHh----ccC
Confidence 99999999998886 888876531 11 011111 22222 44443334443332 222
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 252 ~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.+. +.....++| . .+.++++.+.+|...+|..
T Consensus 143 ~~~-~~~~~v~va-g--DD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 143 AKP-GGRRDVLVA-G--DDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CCc-CCceeEEEe-c--CcHHHHHHHHHHHHhcCcc
Confidence 111 112333333 2 3678999999999999875
No 65
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.20 E-value=7.8e-10 Score=111.54 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=111.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceecC-----CCcCCHHh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d-----~~~~~~~E 174 (417)
++||+|||.|.||.++|..+..+ |++|+++++... ..+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 999988776532 12211 122221100 12457889
Q ss_pred hhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhc
Q 014863 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 175 av~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G 251 (417)
++++||+|+-++|..... +++.++..+++++++|. -++++.+..+.. .....-+++..||--|.+.++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 999999999999977663 58889999999998764 445676665554 222234799999988877731
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 252 ~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.- =|.++...+.+.++.+.+++..+|..
T Consensus 151 -------LV-EVv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 -------LV-EVLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------eE-EEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 11 14457788999999999999999964
No 66
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.13 E-value=5.9e-09 Score=106.90 Aligned_cols=253 Identities=16% Similarity=0.212 Sum_probs=146.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------ceEEEEecCCch---h-HHHHHHc--------CceecC--CCcC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---S-FAEARAA--------GFTEEN--GTLG 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~Vivg~r~~~~---s-~~~A~~~--------G~~~~d--~~~~ 170 (417)
+||+|||.|++|.++|..|.+. | ++|.++.|+..- . .+.-.+. |+...+ ....
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence 6899999999999999999988 6 688887766421 1 1111111 111100 0145
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHHh--cCCCCcE-EEEeccchhh---------hhhccccCCCCCCcEEEeccC
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPK 238 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~p--~Lk~Gai-L~~a~G~~i~---------~~~~~~i~~~~di~VI~v~Pn 238 (417)
|+++++++||+|+++||++...++++++.+ +++++++ |+.+.|+... .+.+ .++.. -.+..-|+
T Consensus 86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~-~~~LsGPs 161 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIP-CCALSGAN 161 (365)
T ss_pred CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCC-eEEEECCC
Confidence 778899999999999999999999999999 8887764 5688887522 1222 22222 23466777
Q ss_pred CchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHH
Q 014863 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVE 318 (417)
Q Consensus 239 ~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~ie 318 (417)
.+..+. .|.++.+++... +. +.+..+...+... .|.-.+..|+.|-+ |||++--++-
T Consensus 162 ~A~Eva------------~~~pt~~vias~-~~---~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNviA 218 (365)
T PTZ00345 162 VANDVA------------REEFSEATIGCE-DK---DDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNIIA 218 (365)
T ss_pred HHHHHH------------cCCCcEEEEEeC-CH---HHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHHHH
Confidence 766553 456665554432 23 3344444555555 23334455888877 8888877432
Q ss_pred --HHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhccC--hhHHH
Q 014863 319 --SLFRRFTENGMNEDLA-YKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YPCME 383 (417)
Q Consensus 319 --a~~~~~v~~Gl~~e~A-~~~~~~~l~~~~~~li~----------e~G~~~l~~~vs~~~~~~~~~~~~~~~--~~~~~ 383 (417)
++.-.+...|..-.-| +...+.||. -+++.+. -.|++.|.--|++-....||..+.... ++..+
T Consensus 219 Ia~Gi~dGl~~G~N~kaalitrgl~Em~-~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~ 297 (365)
T PTZ00345 219 LAAGFCDGLGLGTNTKSAIIRIGLEEMK-LFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEE 297 (365)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHH
Confidence 2222233344432222 333445555 3333332 145566766676633356787655332 34444
Q ss_pred HHHHHHH-hhhcchhH
Q 014863 384 ILYECYE-DVAAGSEI 398 (417)
Q Consensus 384 ~m~~~~~-~v~~g~~~ 398 (417)
++++++. .+..|-.+
T Consensus 298 ~~~~~~~~~~vEG~~t 313 (365)
T PTZ00345 298 IEAELLNGQKLQGTVT 313 (365)
T ss_pred HHHHhhCCcEechHHH
Confidence 4444322 33445554
No 67
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.12 E-value=3e-09 Score=109.88 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=118.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-------------------HcC-ceecCCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~d~~~~~ 171 (417)
|||+|||+|.||.++|.+|.+. |++|+++++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999999 9998776654332 22211 123 332 357
Q ss_pred HHhhhccCCeEEEeecchh----------HHHHHHHHHhcCCCCcEEEEeccchh----hh---hhccccCCCCCCc-EE
Q 014863 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLL----GH---LQSMGLDFPKNIG-VI 233 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a----------~~~Vl~eI~p~Lk~GaiL~~a~G~~i----~~---~~~~~i~~~~di~-VI 233 (417)
..++++++|+||+++|... ...+++.|.+++++|++|++.+++.. .. +.+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 45677889999999999887775421 11 1110000111233 36
Q ss_pred EeccCC--chhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCcccccchhhhhhhhccccccccc
Q 014863 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (417)
Q Consensus 234 ~v~Pn~--pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG-~~~~iett~~~E~~~dlfgeqtvL~ 310 (417)
..+|.. +|..+.+.+. .+.++. . .+.+..+.+..++..++ ...+..++. ..-+.--+-+.+ +.
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSI-ETAEMIKLAENT-FR 215 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCH-HHHHHHHHHHHH-HH
Confidence 777743 2222211111 223232 3 36789999999999997 332222221 111111111222 12
Q ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 311 GAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 311 G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
+.--+++.-+...+.+.|+++++.+..
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~~ 242 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIEA 242 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 222335555677778888888877653
No 68
>PLN02858 fructose-bisphosphate aldolase
Probab=99.11 E-value=5.3e-10 Score=130.70 Aligned_cols=199 Identities=12% Similarity=0.048 Sum_probs=121.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
++|||||+|+||.+||+||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999888876443 45555678775 67899999999999999998777
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchhh---hhhccccCCCCC--CcEEEecc-CCchhhHHHHHhhcccccCCCceE
Q 014863 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKN--IGVIAVCP-KGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 192 ~-~Vl---~eI~p~Lk~GaiL~~a~G~~i~---~~~~~~i~~~~d--i~VI~v~P-n~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
. +|+ +.+.+.+++|+++++.+-+... .+.+ ..-..+ +.++- +| .+.... -+. |--.
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~--~l~~~g~~~~~lD-aPVsGg~~~----A~~-------G~L~ 139 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEK--KLTERKEQIFLVD-AYVSKGMSD----LLN-------GKLM 139 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHH--HHHhcCCceEEEE-ccCcCCHHH----Hhc-------CCeE
Confidence 5 676 3588899999999988765422 2221 011223 44442 33 221111 112 3332
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccc-cchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFA-TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~ie-tt~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
++ +.. +.+..+.+..++..+|...... -..-.=....+..- ..+.+...++.| ++..+.+.|++++..+.....
T Consensus 140 im-vGG--~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN-~l~~~~~~a~aE-Al~la~~~Gld~~~l~~vl~~ 214 (1378)
T PLN02858 140 II-ASG--RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNE-LLEGIHLVASAE-AMALGVRAGIHPWIIYDIISN 214 (1378)
T ss_pred EE-EcC--CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHH-HHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHhc
Confidence 22 233 4567889999999999541100 00000000111100 011111112233 234578999999988875543
No 69
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.10 E-value=3.1e-09 Score=113.18 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=135.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcC-------------ceec
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G-------------~~~~ 165 (417)
.+++|+|||.|.||..||.++..+ |++|++.+++.+ ..+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 358999999999999999999999 999988877643 2333 24455 232
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL-~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
..++++ +.+||+||-++|..... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.--|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 456655 56999999999987774 4777888888899988 4778887766654 222223689999988877
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH-HHHHHH
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLF 321 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a-~iea~~ 321 (417)
.+ ... .++.+...+.+..+.+..++..+|...+. . .+ ..+.+..-+.. ++..++
T Consensus 151 v~-------------~Lv-Evv~g~~Ts~~~~~~~~~l~~~lgk~pv~-v---~d-------~pGfi~Nrll~~~~~Ea~ 205 (507)
T PRK08268 151 LM-------------KLV-EVVSGLATDPAVADALYALARAWGKTPVR-A---KD-------TPGFIVNRAARPYYTEAL 205 (507)
T ss_pred cC-------------eeE-EEeCCCCCCHHHHHHHHHHHHHcCCceEE-e---cC-------CCChHHHHHHHHHHHHHH
Confidence 73 122 24456678889999999999999964211 1 11 01112222222 333333
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHH---HHHHHHHHhcHHHHH
Q 014863 322 RRFTENGMNEDLAYKNTVECITG---IISKIISTQGMLAVY 359 (417)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~~~l~~---~~~~li~e~G~~~l~ 359 (417)
..+.+.|.++++.....-+. .+ |.-.++-..|++..+
T Consensus 206 ~l~~~g~~~~~~iD~al~~~-~G~~mGPf~l~D~~Gldv~~ 245 (507)
T PRK08268 206 RVLEEGVADPATIDAILREA-AGFRMGPFELMDLIGLDVNH 245 (507)
T ss_pred HHHHcCCCCHHHHHHHHHhc-CCCCcCHHHHHHHhchHHHH
Confidence 44445557787666543221 11 455666666664433
No 70
>PLN02858 fructose-bisphosphate aldolase
Probab=99.09 E-value=2.4e-09 Score=125.28 Aligned_cols=203 Identities=16% Similarity=0.125 Sum_probs=122.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+++|||||+|+||.+||.+|.+. |++|.++++...+ .+...+.|... ..++.+++++||+||+++|+..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 38999999999999999999999 9999888776433 44555567654 5688999999999999999555
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchhhh---hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEE
Q 014863 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~p~Lk~GaiL~~a~G~~i~~---~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~li 263 (417)
+ .+|+. .+.+.+++|+++++.+-+.... +.+.-..-..++.++ =+|=..++.. - ..|-..++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~---A-------~~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR---A-------AMGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh---h-------hcCCceEE
Confidence 4 57772 4788899999998877654221 211000001355544 2342222221 1 13433333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCccccc-chhhhhhhhcccccccccchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014863 264 AVHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (417)
Q Consensus 264 av~qd~sgea~e~a~al~~aiG~~~~iet-t~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~ 340 (417)
+ .. +.+..+.++.++..+|....+-. ..-.=....+. .+ .++++.-+.+--++..+.++|++++..+.....
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-nN-~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~ 534 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-NQ-LLAGVHIASAAEAMAFGARLGLNTRKLFDIISN 534 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3 33 46789999999999996421100 00000011111 01 122222222222445668999999988875443
No 71
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.08 E-value=1.1e-08 Score=101.92 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
.+ |||+|||+|+||.++|+.|.+. |++|.+++|... .+++++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 7999999999999999999999 999988877532 2567888999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEEEEec
Q 014863 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (417)
Q Consensus 189 ~a~~~Vl~eI~p~-Lk~GaiL~~a~ 212 (417)
..+.++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 9888999888875 78888776543
No 72
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.05 E-value=5.4e-10 Score=102.95 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=78.7
Q ss_pred hhccCcc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 93 IVRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 93 ~~~~g~~--~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
.+++|+| ........+.| ++|||||+|.+|..+|+.|+.. |.+|+++++.... .......++. ..
T Consensus 17 ~~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~ 83 (178)
T PF02826_consen 17 AQRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YV 83 (178)
T ss_dssp HHHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ES
T ss_pred HHHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----ee
Confidence 3467788 22223489999 9999999999999999999988 9998877776432 2335566775 46
Q ss_pred CHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe
Q 014863 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS 211 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a 211 (417)
+.+|++++||+|++++|..... .++. +.+..||+|++++-+
T Consensus 84 ~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred ehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 9999999999999999965553 5664 688899999988844
No 73
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.05 E-value=1.1e-09 Score=98.91 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=80.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec----------CCCcCCHHhhhccCCeE
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------d~~~~~~~Eav~~ADiV 182 (417)
||+|||.|++|.++|.-|.+. |++|.++.|+. +..+.-.+.+.... -....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99998887764 33333333222100 00146789999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch------hh-hhhccccCCCCCCcEEEeccCCchhh
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------LG-HLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~------i~-~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
++++|.+.+.++++++.|+++++++|+ ...||. +. .+.+ .+|...-++..-|+-+..+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~---~~~~~~~~~lsGP~~A~Ei 139 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEE---ILPIPRIAVLSGPSFAEEI 139 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHH---HHSSCGEEEEESS--HHHH
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHH---HhhhcceEEeeCccHHHHH
Confidence 999999999999999999999998765 555772 22 2332 2333334556667665554
No 74
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.04 E-value=9.1e-10 Score=111.33 Aligned_cols=150 Identities=23% Similarity=0.254 Sum_probs=100.0
Q ss_pred hhhccCcccccc--------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 92 YIVRGGRDLFNL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 92 ~~~~~g~~~f~~--------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
..+|+|+|.... ....|.| ++|||||+|+||.++|+.|+.. |++|+++++.... ......|+.
T Consensus 124 ~~~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~ 194 (333)
T PRK13243 124 HFVRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE 194 (333)
T ss_pred HHHHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE
Confidence 345677775310 1257899 9999999999999999999988 9998776654322 233445654
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhHH-HHH-HHHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEE
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl-~eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~ 234 (417)
..+.+|++++||+|++++|..... .++ ++.+..||+|++|+.++ |-. +..+++ +..-...+||.-
T Consensus 195 -----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gAaLDV~~ 268 (333)
T PRK13243 195 -----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAGAGLDVFE 268 (333)
T ss_pred -----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEEEEeccCC
Confidence 358899999999999999977654 566 47889999999988554 421 222332 111123457777
Q ss_pred eccCCchhhHHHHHhhcccccCCCceEEEeecCC
Q 014863 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 235 v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
..|-. .+ .++.. -+.+++||--
T Consensus 269 ~EP~~-~~---pL~~~--------~nvilTPHia 290 (333)
T PRK13243 269 EEPYY-NE---ELFSL--------KNVVLAPHIG 290 (333)
T ss_pred CCCCC-Cc---hhhcC--------CCEEECCcCC
Confidence 77742 21 12222 3567888764
No 75
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.03 E-value=9.9e-09 Score=100.35 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=73.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-C------CCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N------GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d------~~~~~~~Eav~~ADiViL 184 (417)
|||+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+... + ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 999888777533 3444555565320 0 113345554 89999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcE-EEEeccch
Q 014863 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~ 215 (417)
+||+.+..++++.+.+++.++++ |+...|+.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 99999999999999999988765 45777876
No 76
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.03 E-value=2.2e-08 Score=99.96 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--Cce------ecC--CCcCCHHhhh-ccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~d--~~~~~~~Eav-~~AD 180 (417)
|||+|||.|+||.++|..|.++ |++|.++.|... ..+.-.+. +.. ..+ ....+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 999887777532 22222221 111 000 0124556666 5899
Q ss_pred eEEEeecchhHHHHHHHHHh-cCCCCc-EEEEeccch
Q 014863 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p-~Lk~Ga-iL~~a~G~~ 215 (417)
+||++||++...++++++.| ++++++ +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 556777873
No 77
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.03 E-value=2e-08 Score=104.44 Aligned_cols=203 Identities=15% Similarity=0.076 Sum_probs=119.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh---------------
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea--------------- 175 (417)
++||+|||+|.||.++|.+|++. |++|+++++. ....+. ...|..+. .-...++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9998766654 333333 33343210 01112222
Q ss_pred hccCCeEEEeecc----------hhHHHHHHHHHhcCCCCcEEEEeccchh---h----hhhccccC--CC----CCCc-
Q 014863 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLL---G----HLQSMGLD--FP----KNIG- 231 (417)
Q Consensus 176 v~~ADiViLavpd----------~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i---~----~~~~~~i~--~~----~di~- 231 (417)
+++||+||+|+|+ ..+.++++.|.+++++|++|++.+.+.. . .+.+.+.. .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3489999999997 4666788889999999999887654431 1 12211111 11 0112
Q ss_pred EEEecc--CCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccc
Q 014863 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL 309 (417)
Q Consensus 232 VI~v~P--n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL 309 (417)
.+...| -.+|....+... .+.++ .. .+.+..+.+..++..++....+.++. .+-+.--+-+.+ +
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vv--gG-~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~ 218 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVI--GG-MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS-F 218 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEE--Ee-CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-H
Confidence 355677 445555433221 33332 22 36788999999999998542222221 222222222222 2
Q ss_pred cchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014863 310 LGAVHGIVESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 310 ~G~~~a~iea~~~~~v~~Gl~~e~A~~~ 337 (417)
...--+++.-+...+.+.|+++++..+.
T Consensus 219 ~a~~ia~~nE~~~lae~~GiD~~~v~~~ 246 (415)
T PRK11064 219 RDVNIAFANELSLICADQGINVWELIRL 246 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 2233335555677777888888877653
No 78
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.02 E-value=2.1e-08 Score=99.24 Aligned_cols=216 Identities=15% Similarity=0.153 Sum_probs=135.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (417)
|+||||||.|.||..+|..+... |++|+++++..+ ..+. +.+.|..... ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEE-LATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 57999999999999999999999 999988877643 2222 3334432100 0134
Q ss_pred CHHhhhccCCeEEEeecchhHH--HHHHHHHhcC-CCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~L-k~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (417)
+. +.+++||+||-++|.+... +++.++...+ +++++|. -++++.+..+.. .....-+++.+|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 56 5689999999999988775 5777888877 8899876 455666665554 22222369999998887773
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCCcccccchhhhhhhhcccccccccc-hHHHHHHHHHHHH
Q 014863 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRRF 324 (417)
Q Consensus 247 ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~-aiG~~~~iett~~~E~~~dlfgeqtvL~G-~~~a~iea~~~~~ 324 (417)
+..- +.+....+.+..+.+..++. .+|...+. . .+ ..+-+.. .+..++..++ .+
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~-v---~d-------~pGfi~nRi~~~~~~Ea~-~l 207 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQVVR-A---QD-------RSGFVVNALLVPYLLSAI-RM 207 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCCceE-e---cC-------CCChHHHHHHHHHHHHHH-HH
Confidence 1223 55688889999999999988 59964111 1 11 1111111 1222233233 44
Q ss_pred HHcCC-CHHHHHHHHHHH--HHHHHHHHHHHhcHHHHHhccc
Q 014863 325 TENGM-NEDLAYKNTVEC--ITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 325 v~~Gl-~~e~A~~~~~~~--l~~~~~~li~e~G~~~l~~~vs 363 (417)
++.|+ ++++.=...... ...|.-.++...|++.+++...
T Consensus 208 l~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~~~~~~~ 249 (286)
T PRK07819 208 VESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDTVKAIAD 249 (286)
T ss_pred HHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccHHHHHHHH
Confidence 56775 455533322211 0125666777777766665544
No 79
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.02 E-value=1.2e-08 Score=108.61 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=109.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (417)
++||+|||.|.||..||.++.++ |++|++++++.+. .+. ..+.|..... ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 58999999999999999999999 9999888776443 222 2334421000 0145
Q ss_pred CHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~l 247 (417)
++++ +.+||+||.++|..... .++.++.+.++++++|. .++.+.+..+.. ......+++..|.=-|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 6654 57999999999976653 57788888888888764 566676665443 22333478999998888773
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
...- +......+.+..+.+..++..+|..
T Consensus 151 ----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 ----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred ----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1332 4457778899999999999999964
No 80
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.02 E-value=8.9e-09 Score=103.75 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=121.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav-~~ADiViLavpd~a 190 (417)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+- -..+..+|..- .+.+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsdy--ssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSDY--SSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcchh--HHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 999888888753 34555666542 44555555 57999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeccch---hhhhhccccCCCCCCcEEEeccC-CchhhHHHHHhhcccccCCCceEEEee
Q 014863 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 191 ~~~Vl~eI~p~-Lk~GaiL~~a~G~~---i~~~~~~~i~~~~di~VI~v~Pn-~pg~~vr~ly~~G~e~~G~Gv~~liav 265 (417)
+..++...-+. +|.|+++++.-.++ ..-+++ .+|+|+|++.+||. ||-.+ --.++|.|.++--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksv---------nh~wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSV---------NHEWQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcC---------CCccccCceEEEE
Confidence 99999876665 89999988665544 333444 78999999999994 33312 1125788876543
Q ss_pred cCC----CCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 014863 266 HQD----VDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (417)
Q Consensus 266 ~qd----~sgea~e~a~al~~aiG~~~~iett~~~E~~~ 300 (417)
+.- ...+.-|...+++.-.|+. .++.+.++|++.
T Consensus 189 vRig~~~~r~ercE~fleIf~cegck-mVemS~eeHDki 226 (480)
T KOG2380|consen 189 VRIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDKI 226 (480)
T ss_pred eeccccccchHHHHHHHHHHHhcCCe-EEEEEeeccccc
Confidence 331 2257889999999999974 667777788443
No 81
>PRK07574 formate dehydrogenase; Provisional
Probab=99.00 E-value=1.9e-09 Score=111.17 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=105.5
Q ss_pred hhhccCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC
Q 014863 92 YIVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 92 ~~~~~g~~~f~~---~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (417)
..+++|+|.... ....|.| ++|||||+|+||..+|+.|+.. |++|+++++...+ .+.....|+..
T Consensus 171 ~~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~~-~~~~~~~g~~~---- 238 (385)
T PRK07574 171 RQAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRLP-EEVEQELGLTY---- 238 (385)
T ss_pred HHHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCCc-hhhHhhcCcee----
Confidence 346778886432 2357999 9999999999999999999988 9998877765322 23334456553
Q ss_pred cCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCC
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKG 239 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~ 239 (417)
..+.+|++++||+|++++|..... .++. +.+..||+|++|+.++ |-. +..+++ +..-....||.-..|--
T Consensus 239 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV~~~EPlp 317 (385)
T PRK07574 239 HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDVWFPQPAP 317 (385)
T ss_pred cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEecCCCCCCC
Confidence 458999999999999999977765 5775 6889999999988553 421 222333 11112345666666643
Q ss_pred chhhHHHHHhhcccccCCCceEEEeecC-CCCHHHHH
Q 014863 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (417)
Q Consensus 240 pg~~vr~ly~~G~e~~G~Gv~~liav~q-d~sgea~e 275 (417)
+.+- ++.. -+.+++||- ..+.++.+
T Consensus 318 ~d~p---L~~~--------pNvilTPHiag~T~e~~~ 343 (385)
T PRK07574 318 ADHP---WRTM--------PRNGMTPHISGTTLSAQA 343 (385)
T ss_pred CCCh---HHhC--------CCeEECCccccCcHHHHH
Confidence 2222 2221 356788875 33444444
No 82
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=108.76 Aligned_cols=93 Identities=24% Similarity=0.275 Sum_probs=76.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
++|||||+|+||.+|+.||.+. |+.|+|++|.-++ .+..++.|... ..++.|+++++|+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999987544 55666678875 67899999999999999998877
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeccch
Q 014863 192 A-DNYE---KIFSCMKPNSIL-GLSHGFL 215 (417)
Q Consensus 192 ~-~Vl~---eI~p~Lk~GaiL-~~a~G~~ 215 (417)
+ +++. .+...+++|... ++++-+.
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTid 133 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTID 133 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccC
Confidence 5 6775 366677788866 6776543
No 83
>PLN03139 formate dehydrogenase; Provisional
Probab=98.98 E-value=2.3e-09 Score=110.58 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=82.9
Q ss_pred hhccCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~~~~g~~~f~---~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
.+++|+|... .....|.| ++|||||+|.||..+|+.|+.. |++|+++++.. ...+...+.|+.. .
T Consensus 179 ~~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~ 246 (386)
T PLN03139 179 QVVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----E 246 (386)
T ss_pred HHHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----c
Confidence 4677888642 12357999 9999999999999999999988 99987766542 2223344556653 4
Q ss_pred CCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
.+.+|++++||+|++++|..... .++. +++..||+|++|+.++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 58999999999999999976664 5775 6899999999988664
No 84
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.98 E-value=3.3e-08 Score=99.80 Aligned_cols=232 Identities=18% Similarity=0.242 Sum_probs=141.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--------CceecC--CCcCCHHhhhccCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~Eav~~AD 180 (417)
++||+|||.|+-|.++|+-|.++ |++|.++.|+..- .+.-... |+...+ ....|+++++++||
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~-~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEI-VAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHH-HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 47999999999999999999999 9999888775321 1111111 221100 12568999999999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch------h-hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------L-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~------i-~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|++++|.+.+.++++++.++++++++++ .+-|+. + ..+++ .+|.+.-++..-||....+
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV--------- 141 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV--------- 141 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH---------
Confidence 99999999999999999999999988755 666763 2 23433 4454445677778775555
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHH--HHHHHHHHHHcCCC
Q 014863 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI--VESLFRRFTENGMN 330 (417)
Q Consensus 253 e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~--iea~~~~~v~~Gl~ 330 (417)
.+|.|+.+++... +.+..+.+..+|. .+ +|..-+..|..|-+ ++|.+--+ |-+++--+...|-.
T Consensus 142 ---a~g~pta~~vas~-d~~~a~~v~~~f~---~~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 142 ---AQGLPTAVVVASN-DQEAAEKVQALFS---SP-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred ---hcCCCcEEEEecC-CHHHHHHHHHHhC---CC-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChh
Confidence 2578887776654 3334344444443 33 23333444777776 77777762 44444444555554
Q ss_pred HHHHHH-HHHHHHHHHHHHH-------HHHhcHHHHHhcccCc--hhhhhhhhhh
Q 014863 331 EDLAYK-NTVECITGIISKI-------ISTQGMLAVYNSFSGE--DKKEFEKAYS 375 (417)
Q Consensus 331 ~e~A~~-~~~~~l~~~~~~l-------i~e~G~~~l~~~vs~~--~~~~~~~~~~ 375 (417)
-.-|+. ....||......| +.-.|++.|.--|+|+ ....||..+.
T Consensus 208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg 262 (329)
T COG0240 208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLG 262 (329)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCCccccHHHHHHHh
Confidence 444332 2344444222221 1223344454555553 2245675443
No 85
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.96 E-value=3.9e-09 Score=99.74 Aligned_cols=129 Identities=15% Similarity=0.001 Sum_probs=95.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||+|||. |.||..++.-++++ |+.|. +++||+||||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999999 98763 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
..++++++. .+|+|+++++-...+. ..+||..||.. |+. .++...+ .+++++ ..+.+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HPMf-Gp~------~a~~~lf--~~~iv~-~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHPLF-GPM------SYNDGVH--RTVIFI-NDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCCCC-CCC------cCccccc--ceEEEE-CCCCC
Confidence 999998865 2688999998543221 34899999943 422 1110111 255443 55667
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhcc
Q 014863 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIF 303 (417)
Q Consensus 271 gea~e~a~al~~aiG~~~~iett~~~E~~~dlf 303 (417)
.++.+.+++++. | .++++++.++|++.-.+
T Consensus 101 ~~~~~~~~~l~~--G-~~~~~~t~eeHD~~~A~ 130 (197)
T PRK06444 101 DNYLNEINEMFR--G-YHFVEMTADEHDLLMSE 130 (197)
T ss_pred HHHHHHHHHHHc--C-CEEEEeCHHHHHHHHHH
Confidence 788889999998 6 47899999999776433
No 86
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.95 E-value=1.9e-09 Score=108.94 Aligned_cols=151 Identities=22% Similarity=0.231 Sum_probs=104.9
Q ss_pred hhccCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 93 IVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~~~~g~~~f~~~-~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..|+|+|..... ...|.| ||+||||+|.+|..+|+.++.. |++|+++++..++ +.+...+... ..+
T Consensus 124 ~~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~ 190 (324)
T COG0111 124 SQRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDS 190 (324)
T ss_pred HHHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----ccc
Confidence 348899987222 358899 9999999999999999999988 9998776663333 2344455553 568
Q ss_pred HHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchh
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
.++++++||+|++++|...- ..++. +.+..||+|++++-++ |-. +..+++ +-.-...+||.--.|..+.+
T Consensus 191 Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~EPl~~~~ 269 (324)
T COG0111 191 LDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEEEPLPADS 269 (324)
T ss_pred HHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCCCCCCCCC
Confidence 99999999999999996555 45775 6788899999888553 321 333443 22223467787788766552
Q ss_pred hHHHHHhhcccccCCCceEEEeecCC
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd 268 (417)
- +|.. -+.+++||--
T Consensus 270 p---L~~~--------pnV~~TPHia 284 (324)
T COG0111 270 P---LWDL--------PNVILTPHIG 284 (324)
T ss_pred h---hhcC--------CCeEECCccc
Confidence 2 3332 3456688763
No 87
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.94 E-value=4.6e-09 Score=106.19 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=72.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
...|.| ++|||||+|+||.++|+.|+.. |++|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 468999 9999999999999999999988 9998877665322111 1111 3478999999999999
Q ss_pred eecchhHH-HHH-HHHHhcCCCCcEEEEe-ccc
Q 014863 185 LISDAAQA-DNY-EKIFSCMKPNSILGLS-HGF 214 (417)
Q Consensus 185 avpd~a~~-~Vl-~eI~p~Lk~GaiL~~a-~G~ 214 (417)
++|..... .++ +++++.|++|++|+.+ -|-
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 99977653 444 4789999999988744 453
No 88
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.93 E-value=9.8e-08 Score=97.19 Aligned_cols=230 Identities=16% Similarity=0.215 Sum_probs=132.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------ceEEEEecCC---chhHHHHHH---------cCceecC--CCcC
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~d--~~~~ 170 (417)
||+|||.|+.|.++|.-|.++ | ++|.++.|.. .+....... .|+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 8888887632 111111111 1221100 0135
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchhh---------hhhccccCCCCCCc-EEEeccCC
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIG-VIAVCPKG 239 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i~---------~~~~~~i~~~~di~-VI~v~Pn~ 239 (417)
++++++++||+|++++|++.+.++++++.++++++++ |+.+.|+... .+++ .++ .+ .+..-|+.
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~--~~~~~lsGP~~ 149 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELG--IPCGVLSGANL 149 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhC--CCeEEeeCcch
Confidence 7889999999999999999999999999999998875 5678887533 1222 122 23 34666766
Q ss_pred chhhHHHHHhhcccccCCCceEEEeecC-CCC--HHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHH
Q 014863 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVD--GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI 316 (417)
Q Consensus 240 pg~~vr~ly~~G~e~~G~Gv~~liav~q-d~s--gea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~ 316 (417)
+..+. +|.++.+++.. +.+ .+..+.+.++ +-.. .|.-..-.|..|-+ |||.+--+
T Consensus 150 A~Eva------------~~~pt~~~ia~~~~~~~~~~a~~~~~l---f~~~-----~frv~~s~Dv~GvE--l~galKNv 207 (342)
T TIGR03376 150 ANEVA------------KEKFSETTVGYRDPADFDVDARVLKAL---FHRP-----YFRVNVVDDVAGVE--IAGALKNV 207 (342)
T ss_pred HHHHH------------cCCCceEEEEeCCCcchHHHHHHHHHH---hCCC-----CEEEEEcCCcccch--hhHHHHHH
Confidence 55543 34555444433 222 3444444444 4444 23333445888877 88888774
Q ss_pred HHH--HHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhc
Q 014863 317 VES--LFRRFTENGMNEDLA-YKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 317 iea--~~~~~v~~Gl~~e~A-~~~~~~~l~~~~~~li~----------e~G~~~l~~~vs~~~~~~~~~~~~~ 376 (417)
+-. +.-.+...|..-.-| +...+.||. -+++.+. -.|++.|.--|++-....||..+..
T Consensus 208 ~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~-~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~ 279 (342)
T TIGR03376 208 VAIAAGFVDGLGWGDNAKAAVMRRGLLEMI-KFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAK 279 (342)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHh
Confidence 332 222222333222222 222344444 3333332 2344666666665233567776543
No 89
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.93 E-value=5e-09 Score=105.90 Aligned_cols=136 Identities=25% Similarity=0.276 Sum_probs=98.0
Q ss_pred cchhhhccCccccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 89 RDEYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 89 ~~e~~~~~g~~~f~-----~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
..+.-+|.|+|... .....++| ||+||||+|.||.++|+.++.. |++|++++++.. .+...+.++.
T Consensus 120 ~~~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~ 190 (324)
T COG1052 120 EGDRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR 190 (324)
T ss_pred HHHHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce
Confidence 44566888888765 33468999 9999999999999999999866 999887776633 2333334455
Q ss_pred ecCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEE
Q 014863 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (417)
Q Consensus 164 ~~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~ 234 (417)
..+.+|++++||+|+|++|..... .++. +.+..||+|.+|+-++ |-. +.-+++ +..-....||.-
T Consensus 191 -----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglDV~e 264 (324)
T COG1052 191 -----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLDVFE 264 (324)
T ss_pred -----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEeeecC
Confidence 346999999999999999987775 5664 6888999999988443 421 223333 222244677777
Q ss_pred eccCC
Q 014863 235 VCPKG 239 (417)
Q Consensus 235 v~Pn~ 239 (417)
-.|.-
T Consensus 265 ~Ep~~ 269 (324)
T COG1052 265 NEPAL 269 (324)
T ss_pred CCCCC
Confidence 77764
No 90
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.93 E-value=3.7e-09 Score=106.82 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=74.8
Q ss_pred hccCcccccc--cccccCCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 94 VRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 94 ~~~g~~~f~~--~~~~l~g~kkIgIIG~G~mG~AiA~~L-r~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
+|+|+|.+.. ....|.| +||||||+|+||.++|+.| +.. |++|++.++...+. ...++.. ..
T Consensus 128 ~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~ 192 (332)
T PRK08605 128 VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KD 192 (332)
T ss_pred HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cC
Confidence 4555553221 2367999 9999999999999999999 445 88877655442221 1122331 35
Q ss_pred CHHhhhccCCeEEEeecchhHHHHH--HHHHhcCCCCcEEEEec
Q 014863 171 DIYETISGSDLVLLLISDAAQADNY--EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl--~eI~p~Lk~GaiL~~a~ 212 (417)
+.++++++||+|++++|.......+ .+..+.|++|++|+.++
T Consensus 193 ~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~s 236 (332)
T PRK08605 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCA 236 (332)
T ss_pred CHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECC
Confidence 8899999999999999988776544 46889999999888554
No 91
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.92 E-value=4.7e-08 Score=95.48 Aligned_cols=225 Identities=14% Similarity=0.234 Sum_probs=155.1
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCceEEEEecC----CchhHHHHHHcCceecC
Q 014863 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (417)
Q Consensus 111 ~kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~d 166 (417)
|+||+|.|.||| |..||-..... |++|++...+ +...|++-++.|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 478899999987 55677777666 9999887643 235599999999986
Q ss_pred CCcCCHHhhhccCCeEEEeecch-hHHHHHHHHHhcCCCCcEEEEecc---chhhh-hhccccCC-CCCCcEEEeccC-C
Q 014863 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLSHG---FLLGH-LQSMGLDF-PKNIGVIAVCPK-G 239 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~-a~~~Vl~eI~p~Lk~GaiL~~a~G---~~i~~-~~~~~i~~-~~di~VI~v~Pn-~ 239 (417)
+.|..++++.+++.+|-||-. ....+.++|.+++..|++|+-.+- +.+.+ ++. .+.. ++|+-|...||- .
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~-~Lr~kR~dVGvssmHPAgv 149 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG-ELRTKREDVGVSSMHPAGV 149 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh-hhcCchhhcCccccCCCCC
Confidence 677789999999999999988 556899999999999999974443 33332 332 3333 478888999994 3
Q ss_pred chhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH--HH
Q 014863 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IV 317 (417)
Q Consensus 240 pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a--~i 317 (417)
||+..-+.|.-+ |++-.. -.-++.++.+++..++++.|-. ++.. .-|+....+- +|++.. .+
T Consensus 150 PGtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~-~yv~------padv~s~VaD-mg~lvtav~l 213 (340)
T COG4007 150 PGTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKE-VYVL------PADVVSAVAD-MGVLVTAVAL 213 (340)
T ss_pred CCCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCc-eEec------CHHHHHHhhh-hHHHHHHHHH
Confidence 666644444443 122111 1235789999999999999964 2222 1133322222 333332 34
Q ss_pred HHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 318 ESLFRRF----TENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 318 ea~~~~~----v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
.+..|.+ .-.|-|.|+--+.+..++. .++-|+-.+|++.|.....
T Consensus 214 ~gvldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 214 SGVLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 4433332 3578999998888887776 9999999999988877554
No 92
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.92 E-value=4e-09 Score=105.59 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=79.5
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
..+|+|+|..... ..|.| ++|||||+|+||.++|+.++.. |++|+++++...+ .|+.. ...+
T Consensus 105 ~~~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~ 166 (303)
T PRK06436 105 YNMKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYME 166 (303)
T ss_pred HHHHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCC
Confidence 4467788876544 68999 9999999999999999988877 9998777664221 23321 0357
Q ss_pred HHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
+++++++||+|++++|..... .++. +.+..||+|++++.++
T Consensus 167 l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 167 PEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred HHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence 899999999999999977765 4664 6888899999988553
No 93
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.91 E-value=6e-09 Score=105.15 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=102.5
Q ss_pred hhhhccCcccccc----cccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHHHHcCceec
Q 014863 91 EYIVRGGRDLFNL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 91 e~~~~~g~~~f~~----~~~~l~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (417)
...+|+|+|.... ....|.| ++|||||+|+||..+|+.++ .. |++|++.++... .+.....|..
T Consensus 122 ~~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~-- 190 (323)
T PRK15409 122 AERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR-- 190 (323)
T ss_pred HHHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE--
Confidence 4456788886421 2357999 99999999999999999997 55 888876555422 2222345555
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhccccCCCCCCcEEEec
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a-~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++++-+ -|-. +..+++ +..-....||..-.
T Consensus 191 ---~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 266 (323)
T PRK15409 191 ---YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGLDVFEQE 266 (323)
T ss_pred ---ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 458999999999999999966664 5664 688999999998844 3421 223333 11222356666666
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHH
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~ 274 (417)
|-.+.+. ++.. -+.+++||-- .+.++.
T Consensus 267 P~~~~~p---L~~~--------~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 267 PLSVDSP---LLSL--------PNVVAVPHIGSATHETR 294 (323)
T ss_pred CCCCCch---hhcC--------CCEEEcCcCCCCcHHHH
Confidence 6422221 2221 4667888863 333443
No 94
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=112.37 Aligned_cols=136 Identities=13% Similarity=-0.045 Sum_probs=99.2
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCC-CcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~d-i~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
||||+|+....++++++.|+++++++|+|+++++...++.....++.+ .+||..|| +.|.+. ..|+..+....+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~-~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRES-SGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcc-hhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999843322211134432 57999999 333331 233333333346799
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
+++||.++.+.++++.+++++..+| .+++.++.++|++.-.+ +++..|-+.-++.+.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD~~~A~-----iShlpH~~a~~l~~~~~ 137 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHDRVFAA-----VSHLPHVLSFALVEQIL 137 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHHHHHHH-----HhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 46888999999777533 45555555555555543
No 95
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.89 E-value=5.3e-09 Score=105.04 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=78.1
Q ss_pred hhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 014863 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (417)
..++|+|..... ..+.| ++|||||+|+||..+|+.|+.. |++|+++++...+ . .++.. .....+.
T Consensus 120 ~~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l 184 (312)
T PRK15469 120 LQNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREEL 184 (312)
T ss_pred HHHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccH
Confidence 356678864333 56899 9999999999999999999988 9998776654321 1 12221 0013478
Q ss_pred HhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
++++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 185 ~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 185 SAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 99999999999999977664 5665 5889999999988554
No 96
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.89 E-value=6.5e-09 Score=111.11 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=82.9
Q ss_pred hhhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC
Q 014863 92 YIVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (417)
..+|+|+|.... ....|.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.. ..
T Consensus 119 ~~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~ 185 (525)
T TIGR01327 119 ASLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VD 185 (525)
T ss_pred HHHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cC
Confidence 346778886432 1257999 9999999999999999999988 99987766542 234455667653 35
Q ss_pred CHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec
Q 014863 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
+.+|++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 186 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 186 DLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred CHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 7999999999999999977654 5664 6788999999988653
No 97
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.89 E-value=2.7e-08 Score=99.49 Aligned_cols=96 Identities=27% Similarity=0.299 Sum_probs=73.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC-------------CcCCHHhhhc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-------------TLGDIYETIS 177 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~-------------~~~~~~Eav~ 177 (417)
|+||+|||.|.||.++|..|.++ |++|.+.+|. +..+...+.|....+. ...+. ++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47999999999999999999999 9998887764 2234445556542110 01233 5678
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 178 ~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
.+|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 99999999999998999999999999988765 556775
No 98
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.87 E-value=6.8e-09 Score=110.99 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=82.8
Q ss_pred hhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
.+|+|+|.... ....|.| |+|||||+|+||..+|+.|+.. |++|+++++... .+.+...|+.. .+
T Consensus 122 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~-----~~ 187 (526)
T PRK13581 122 SLKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL-----VS 187 (526)
T ss_pred HHHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE-----Ec
Confidence 45678886432 2357999 9999999999999999999988 999877665422 34455667763 38
Q ss_pred HHhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
.+|++++||+|++++|.... ..++ .+.+..||+|++|+.++
T Consensus 188 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 188 LDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred HHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 99999999999999997765 4577 47899999999988553
No 99
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.86 E-value=9.8e-08 Score=93.66 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=74.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC---------CcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~---------~~~~~~Eav~~ADiV 182 (417)
|||+|||.|+||..+|..|.++ |++|.+..| .+ ..+...+.|+...+. ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999999 999888777 33 344455566542110 123456667899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
|+++|..+..++++++.+++.++++|+ ...|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 999999999999999999998887654 567875
No 100
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.85 E-value=8.7e-08 Score=88.89 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=99.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-----------HcCceec---------CCCcCCH
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLGDI 172 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~---------d~~~~~~ 172 (417)
||+|||.|.||.++|..+... |++|.+.+.+.. ..+.+. +.|-... -....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999999 999988776533 221111 1121000 0014677
Q ss_pred HhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHh
Q 014863 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 173 ~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~ 249 (417)
++++ +||+||=++|..... +++.++.+.+.++++|. -++++.+..+.. ..+..-+++.+|+-.|.+.++
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 7877 999999999976653 69999999999999875 778888887765 333334799999988876521
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 250 ~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.-= +.++...+.+.++.+..++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 4468888999999999999999853
No 101
>PLN02928 oxidoreductase family protein
Probab=98.84 E-value=1.1e-08 Score=104.09 Aligned_cols=165 Identities=21% Similarity=0.203 Sum_probs=102.0
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH--H----cCceec
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----AGFTEE 165 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~--~----~G~~~~ 165 (417)
..+++|+|..+.+ ..|.| ++|||||+|.||..+|+.|+.. |++|+++++...+...... . ..+...
T Consensus 142 ~~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~ 213 (347)
T PLN02928 142 ISLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE 213 (347)
T ss_pred HHHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccccccccc
Confidence 3456778865433 67999 9999999999999999999987 9998776654221111100 0 000000
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEec
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~ 236 (417)
.....+.+|++++||+|++++|..... .++. +.+..||+|++|+.++ |-. +.-++. +......+||.-..
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~E 292 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWSE 292 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCCC
Confidence 011458999999999999999966554 5664 6889999999988553 421 222332 11223356777767
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~ 276 (417)
|-.+.+- ++.. -+.+++||-- .+.+..+.
T Consensus 293 P~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 293 PFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCCCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 7433221 2222 4667888863 34444433
No 102
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=98.84 E-value=8.3e-09 Score=88.36 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=59.3
Q ss_pred hhcccccccccchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014863 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 300 ~dlfgeqtvL~G~~~a----~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~--~~l~~~vs~~~~ 367 (417)
++.|+..++++||+|+ +++++.+.+++.|+++++|.+++.|++. |.++|+.+++. ..|++.|++|.-
T Consensus 3 E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~-G~a~ll~~~~~~~~~l~~~v~tPgG 75 (107)
T PF14748_consen 3 EDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFI-GAAKLLEESGRSPAELRDEVTTPGG 75 (107)
T ss_dssp GGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHCSS-HHHHHHHHS-TTS
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHccCCCHHHHhhhccCCCC
Confidence 4678888999999999 7999999999999999999999999999 99999999886 999999999954
No 103
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.83 E-value=1.2e-08 Score=102.30 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=103.2
Q ss_pred hhhccCccccccc-------ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee
Q 014863 92 YIVRGGRDLFNLL-------PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 92 ~~~~~g~~~f~~~-------~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (417)
..+|+|+|..... ...|.| |+|||||+|++|..+|+.++.. |++|+++++.... ...++.
T Consensus 120 ~~~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~- 186 (311)
T PRK08410 120 RYVKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE- 186 (311)
T ss_pred HHHHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce-
Confidence 3467788864321 257999 9999999999999999999877 9998776654211 123454
Q ss_pred cCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEE-eccch------hhhhhccccCCCCCCcEEEe
Q 014863 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~-a~G~~------i~~~~~~~i~~~~di~VI~v 235 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+- +-|-. +..+++..+. ..+||.--
T Consensus 187 ----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~ 260 (311)
T PRK08410 187 ----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEK 260 (311)
T ss_pred ----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCC
Confidence 358999999999999999966554 5665 68889999999884 44521 3334432222 45677777
Q ss_pred ccCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014863 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 236 ~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a 277 (417)
.|-.+.+- ++.-- .=-|.+++||-- .+.++.+..
T Consensus 261 EP~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 261 EPMEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence 77433322 12100 002677888863 344544443
No 104
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.74 E-value=9.5e-08 Score=96.06 Aligned_cols=160 Identities=18% Similarity=0.139 Sum_probs=100.1
Q ss_pred hhccCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec
Q 014863 93 IVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~~~~g~~~f~~-------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (417)
.+++|+|.... ....+.| ++|||||+|.+|..+|+.++.. |++|+++.+.... .....
T Consensus 123 ~~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~-- 187 (314)
T PRK06932 123 DQLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG-- 187 (314)
T ss_pred HHHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc--
Confidence 35667775321 1257999 9999999999999999999877 9998765443211 11111
Q ss_pred CCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEE-Eeccch------hhhhhccccCCCCCCcEEEec
Q 014863 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~-~a~G~~------i~~~~~~~i~~~~di~VI~v~ 236 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+ .+-|-. +..+++ +..-....||.-..
T Consensus 188 ---~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaLDV~~~E 263 (314)
T PRK06932 188 ---YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAALDVLVKE 263 (314)
T ss_pred ---cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEEecCCCC
Confidence 347999999999999999966554 5664 6888999999988 444532 223333 22223456777777
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHH
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd-~sgea~e~a~ 278 (417)
|-.+..-..+.+.+- -+.+++||-- .+.++.+...
T Consensus 264 P~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 264 PPEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred CCCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHHH
Confidence 743322211111111 3667888863 3445554443
No 105
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.74 E-value=4.3e-08 Score=99.28 Aligned_cols=140 Identities=22% Similarity=0.237 Sum_probs=96.0
Q ss_pred hcccchhhhccCccccccc---ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCc
Q 014863 86 LADRDEYIVRGGRDLFNLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (417)
Q Consensus 86 ~~~~~e~~~~~g~~~f~~~---~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (417)
|-+-.| .+++|+|....+ -..++| |+|||+|+|.||..+|++|... |..+.+..|. ....+.+.+.+.
T Consensus 136 ~~~g~~-~~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNE-MVRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYYA 206 (336)
T ss_pred hhhhhh-hhhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhcc
Confidence 334344 366677732221 378999 9999999999999999999987 8545444444 344555555555
Q ss_pred eecCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEE-eccch------hhhhhccccCCCCCCcEE
Q 014863 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVI 233 (417)
Q Consensus 163 ~~~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~-a~G~~------i~~~~~~~i~~~~di~VI 233 (417)
. ..+.+|.+.++|+|++++|..... .+++ ++..+||+|.+|+- +=|-- ...+.+ +.....+.||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCccccccccc
Confidence 4 358899999999999999988775 6776 69999999998873 33421 112222 23334577777
Q ss_pred EeccCCc
Q 014863 234 AVCPKGM 240 (417)
Q Consensus 234 ~v~Pn~p 240 (417)
--.|+.+
T Consensus 281 ~~EP~~~ 287 (336)
T KOG0069|consen 281 EPEPPVD 287 (336)
T ss_pred CCCCCCC
Confidence 7777443
No 106
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.73 E-value=4.2e-08 Score=102.01 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=78.1
Q ss_pred hhccCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC
Q 014863 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~~~~g~~~f~~-~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (417)
.+|+|+|.... ....|.| ++|||||+|++|..+|+.++.. |++|+++++... ....++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee----cCC
Confidence 45678886432 2367999 9999999999999999999887 999876654321 11123332 458
Q ss_pred HHhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 014863 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~ 212 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+-++
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 99999999999999996655 45664 6889999999988443
No 107
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.71 E-value=4.6e-08 Score=98.40 Aligned_cols=128 Identities=23% Similarity=0.192 Sum_probs=88.3
Q ss_pred hhhccCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee
Q 014863 92 YIVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 92 ~~~~~g~~~f~~-------~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (417)
..+|+|+|.... ....|.| ++|||||+|++|..+|+.++.. |++|+++++.... ....
T Consensus 123 ~~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~- 187 (317)
T PRK06487 123 QAVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD- 187 (317)
T ss_pred HHHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc-
Confidence 346778886432 1247999 9999999999999999999877 9998766554211 1122
Q ss_pred cCCCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEe-ccch------hhhhhccccCCCCCCcEEEe
Q 014863 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~d~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a-~G~~------i~~~~~~~i~~~~di~VI~v 235 (417)
..+.+|++++||+|++++|-.... .++. +.+..||+|++|+-+ -|-. +..+++ +......+||.-.
T Consensus 188 ----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~ 262 (317)
T PRK06487 188 ----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSV 262 (317)
T ss_pred ----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCC
Confidence 347899999999999999966554 5665 688999999998844 3421 223333 2222345677777
Q ss_pred ccCC
Q 014863 236 CPKG 239 (417)
Q Consensus 236 ~Pn~ 239 (417)
.|-.
T Consensus 263 EP~~ 266 (317)
T PRK06487 263 EPPV 266 (317)
T ss_pred CCCC
Confidence 7743
No 108
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.70 E-value=1.5e-06 Score=96.43 Aligned_cols=214 Identities=10% Similarity=0.075 Sum_probs=137.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceecC---------CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~ 168 (417)
..|+||+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|-.... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999999 999988776532 2222 2222321000 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..++ +.+++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+|+..|+--|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976664 69999999999999875 677888777765 223334799999988887742
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.-= |.++...+.+.++.+..++..+|...++ . . | ..+-+..-+...+-.-+-.++
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~-v---~----d---~pGfv~nRi~~~~~~ea~~lv 514 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIV-V---N----D---CPGFFVNRVLFPYFAGFSQLL 514 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEE-e---c----C---cCchhHHHHHHHHHHHHHHHH
Confidence 111 3457788999999999999999964221 1 1 1 112222222221112233567
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 014863 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (417)
Q Consensus 326 ~~Gl~~e~A~~~~~~~l---~~~~~~li~e~G~~~l~ 359 (417)
+.|.++++-=....+.+ + |--.++-..|++.++
T Consensus 515 ~~Ga~~e~ID~a~~~~~G~~~-GP~~~~D~~Gld~~~ 550 (715)
T PRK11730 515 RDGADFRQIDKVMEKQFGWPM-GPAYLLDVVGIDTAH 550 (715)
T ss_pred HcCCCHHHHHHHHHhhCCCcc-CHHHHHHhhchHHHH
Confidence 88888876554332321 2 445566666764433
No 109
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.67 E-value=7.6e-07 Score=98.95 Aligned_cols=212 Identities=11% Similarity=0.105 Sum_probs=134.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceec-------C--CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N--GT 168 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d--~~ 168 (417)
..+++|+|||.|.||..||..+... |++|++.+...+ ..++ ..+.|-... + ..
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3458999999999999999999999 999988765532 2222 222221100 0 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..++ +++++||+||=++|.+... +++.++.+.++++++|. -++++.+..+.. .....-+|+..|+-.|.+.++
T Consensus 406 ~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 406 TLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc
Confidence 2345 4679999999999976664 69999999999999875 667888877765 222234799999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.-= |..+...+.+.++.+.+++..+|...++ . . | ..+-+..-+..-+-.-.-.++
T Consensus 482 -------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~-v---~----d---~pGFi~NRi~~~~~~ea~~lv 536 (737)
T TIGR02441 482 -------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIV-V---K----D---GPGFYTTRCLGPMLAEVIRLL 536 (737)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEE-E---C----C---cCCchHHHHHHHHHHHHHHHH
Confidence 111 3457788899999999999999964221 1 1 1 111122222221112223467
Q ss_pred HcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHH
Q 014863 326 ENGMNEDLAYKNTVECIT--GIISKIISTQGMLA 357 (417)
Q Consensus 326 ~~Gl~~e~A~~~~~~~l~--~~~~~li~e~G~~~ 357 (417)
+.|+++++-=.. ...+- -|--.++-..|++.
T Consensus 537 ~eGv~~~~ID~a-~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 537 QEGVDPKKLDKL-TTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred HcCCCHHHHHHH-HHHcCCCCCHHHHHHHhhHHH
Confidence 889988765543 22110 14445666666633
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.66 E-value=2.6e-08 Score=88.16 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=67.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+++ ++|+|||+|.||.++++.|++. | .+|.+.+++..+..+.+.+.+.........+.+++++++|+|++++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 567 9999999999999999999987 6 5677777764444444544443100001456777889999999999
Q ss_pred cchhH-HHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~-~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|+..+ .+-.......++++.+|+++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 99886 11110112336789888877543
No 111
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.65 E-value=2.7e-07 Score=93.16 Aligned_cols=175 Identities=19% Similarity=0.152 Sum_probs=122.2
Q ss_pred ccchhhhccCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC
Q 014863 88 DRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 88 ~~~e~~~~~g~~~f~~~-~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (417)
++-..-++.|+|..... ..++.| |++||||+|-+|.-+|..++.. |++++.++.- ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 44445678899988774 799999 9999999999999999999888 8887665554 346788889988
Q ss_pred CCcCCHHhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec--cch-----hhhhhccccCCCCCCcEEEecc
Q 014863 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH--GFL-----LGHLQSMGLDFPKNIGVIAVCP 237 (417)
Q Consensus 167 ~~~~~~~Eav~~ADiViLavpd~a~~-~Vl~-eI~p~Lk~GaiL~~a~--G~~-----i~~~~~~~i~~~~di~VI~v~P 237 (417)
+.+.+|+++.||+|-|++|-.... .++. +-+..||+|..|+-++ |+- +.-++. +..-..-+||....|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCC
Confidence 579999999999999999966664 5664 6778899999877442 331 223333 333345678888888
Q ss_pred CCchhhHHHHHhhcccccCCCceEEEeecCCCCH-H-----HHHHHHHHHHHhCC
Q 014863 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG-R-----ATNVALGWSVALGS 286 (417)
Q Consensus 238 n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sg-e-----a~e~a~al~~aiG~ 286 (417)
..-+.. ++|-.- -+.+.+||+..+- | +.|.++++...+..
T Consensus 268 p~~~~~-~~Lv~h--------pnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 268 PKNGWD-SELVSH--------PNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred Cccchh-HHHhcC--------CceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 664422 222211 3557889987664 3 23444444444443
No 112
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.65 E-value=9.4e-07 Score=92.40 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=110.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC------------CCcCCHHhhhccC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------GTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d------------~~~~~~~Eav~~A 179 (417)
+||+|||+|.||..+|.+|.+ |++|+++++. ....+... .|..+.. -.+.+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999754 6777665554 43344433 4432100 0133445678999
Q ss_pred CeEEEeecchh-------HHHH---HHHHHhcCCCCcEEEEeccc----hhh----hhhc-cccCCCCCCcEEEecc--C
Q 014863 180 DLVLLLISDAA-------QADN---YEKIFSCMKPNSILGLSHGF----LLG----HLQS-MGLDFPKNIGVIAVCP--K 238 (417)
Q Consensus 180 DiViLavpd~a-------~~~V---l~eI~p~Lk~GaiL~~a~G~----~i~----~~~~-~~i~~~~di~VI~v~P--n 238 (417)
|+||+|+|... ...+ .+.|.+++++|++|++.+-+ .-. .+++ .++....+ .++...| -
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~-~~~~~~PE~v 156 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQD-FYVGYSPERI 156 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCC-eeEeeCCCcC
Confidence 99999999541 1233 35799999999998765433 211 1221 12222111 2333333 3
Q ss_pred CchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhcccccccccchHHHHH
Q 014863 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (417)
Q Consensus 239 ~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~-~~iett~~~E~~~dlfgeqtvL~G~~~a~i 317 (417)
.+|....++. -.+- +.... +.+..+.+..+...+... .+..++. .+-+.-.+-+.+ +.+.--+++
T Consensus 157 ~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~AE~~Kl~~N~-~~av~Ia~~ 222 (425)
T PRK15182 157 NPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESI-KVAEAAKVIENT-QRDLNIALV 222 (425)
T ss_pred CCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 3444421111 1233 22333 456777888888887522 1222211 111222222221 223333366
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 014863 318 ESLFRRFTENGMNEDLAYKN 337 (417)
Q Consensus 318 ea~~~~~v~~Gl~~e~A~~~ 337 (417)
.-++..+.+.|++.++.+..
T Consensus 223 NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 223 NELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHhCcCHHHHHHH
Confidence 66778888889998877764
No 113
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.65 E-value=7.7e-07 Score=98.60 Aligned_cols=213 Identities=10% Similarity=0.068 Sum_probs=135.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-----------HHHcCceec-------C--CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N--GT 168 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d--~~ 168 (417)
..+++|+|||.|.||..||..+..+ |++|++.+...+ ..+. ..+.|-... + ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999999 999988776532 2222 122221100 0 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..+. +.+++||+||=++|.+... +++.++-+.++++++|. -++++.+..+.. .....-+|+..|+=-|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 5679999999999966664 69999999999999875 667788777765 222233799999988888731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.-= |.++...+.+.++.+.+++..+|...++- . | ..+-+..-+..-+-.-.-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~----d---~pGfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIVV----N----D---CPGFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEEe----C----C---cccchHHHHHHHHHHHHHHHH
Confidence 111 34577888999999999999999642211 1 1 112222222221222334467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHH
Q 014863 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAV 358 (417)
Q Consensus 326 ~~Gl~~e~A~~~~~~~l---~~~~~~li~e~G~~~l 358 (417)
+.|.++++-=+...+.+ + |--.++-..|++.+
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~-GPf~l~D~~Gld~~ 549 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPM-GPAYLLDVVGIDTG 549 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCcc-CHHHHHHhhhHHHH
Confidence 88888876544322211 2 44556666676443
No 114
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.64 E-value=2.2e-07 Score=92.41 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=71.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|+|||+|.||.++|+.|+.. |.+|++.+|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 36788 9999999999999999999998 9999888886433 444555666531 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|..... ++..+.|+++.+|++.+
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLA 240 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeC
Confidence 9975321 34667789999988775
No 115
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.63 E-value=2.2e-06 Score=85.46 Aligned_cols=154 Identities=20% Similarity=0.189 Sum_probs=97.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CCC-------cCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~-------~~~~~Eav~~ADiV 182 (417)
+||+|||.|.||..+|..|.++ |++|.+..|... +...+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999999 999988887532 33344564421 010 11222356789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccchh-hhhhccccCCCCCCcEE------EeccCCchhhHHHHHhhcccc
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~i-~~~~~~~i~~~~di~VI------~v~Pn~pg~~vr~ly~~G~e~ 254 (417)
|++||..+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. +++ .....+|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999998889999999999887765 46668753 23333 33433 333 23444555441 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCCc
Q 014863 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPF 288 (417)
Q Consensus 255 ~G~Gv~~liav~qd~s-----gea~e~a~al~~aiG~~~ 288 (417)
.|.|... +......+ .+..+...+++...|...
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~ 181 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDS 181 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCc
Confidence 1344433 33222222 355566677888888653
No 116
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.61 E-value=3.4e-06 Score=93.29 Aligned_cols=212 Identities=13% Similarity=0.132 Sum_probs=133.5
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 014863 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (417)
.++||+|||.|.||..+|.-+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 58 999988765532 22222 122211000 01
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..+. +++++||+||=++|..... +++.++-++++++++|. -++++.+..+.. .....-+++..|+-.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 5789999999999977663 69999999999999875 667888877765 222233799999988877731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH--HHHHHHHH
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRR 323 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a--~iea~~~~ 323 (417)
.-= |.++...+.+..+.+.+++..+|...++ . . | ..+-+..-+.. +.|+ -.
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~pv~-v---~----d---~pGfi~nRl~~~~~~Ea--~~ 504 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKTPIV-V---A----D---KAGFYVNRILAPYMNEA--AR 504 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEE-E---c----c---ccchHHHHHHHHHHHHH--HH
Confidence 111 3457788899999999999999964221 1 1 1 11112222222 2222 23
Q ss_pred HHHcCCCHHHHHHHHHH--HHHHHHHHHHHHhcHHHHHh
Q 014863 324 FTENGMNEDLAYKNTVE--CITGIISKIISTQGMLAVYN 360 (417)
Q Consensus 324 ~v~~Gl~~e~A~~~~~~--~l~~~~~~li~e~G~~~l~~ 360 (417)
+++.|.++++.=..... --. |.-.++-..|++.+++
T Consensus 505 l~~~G~~~~dID~a~~~~G~p~-GPf~l~D~vGld~~~~ 542 (699)
T TIGR02440 505 LLLEGEPVEHIDKALVKFGFPV-GPITLLDEVGIDVGAK 542 (699)
T ss_pred HHHCCCCHHHHHHHHHHcCCCc-CHHHHHHHhchHHHHH
Confidence 46788877665443211 012 4556666667654443
No 117
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.59 E-value=1.6e-06 Score=91.63 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----CceecCCCcCCHHhhhcc---CCeEEEeecchhHH-H
Q 014863 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQA-D 193 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~Eav~~---ADiViLavpd~a~~-~ 193 (417)
||.+||+||.+. |++|.+++|+.++..+..... |+.. ..+++|+++. +|+|++++|+..+. +
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988866554444432 4554 6789998875 89999999987664 7
Q ss_pred HHHHHHhcCCCCcEEEEeccchh---hhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 194 Vl~eI~p~Lk~GaiL~~a~G~~i---~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
|++++.|+|.+|.+|++.+-... ..... ..-.+++.+|-.-=.+-.... + .|. + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvdapVSGG~~gA----~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIGMGVSGGEEGA----L-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEecCCCCCHHHH----h-------cCC-E-EEEeC--C
Confidence 88999999999999998864321 11111 111346666543323321111 1 344 4 44565 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 014863 271 GRATNVALGWSVALGSP 287 (417)
Q Consensus 271 gea~e~a~al~~aiG~~ 287 (417)
.++.+.++-++..+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999963
No 118
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.59 E-value=2.8e-06 Score=85.41 Aligned_cols=151 Identities=16% Similarity=0.218 Sum_probs=109.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------hhHHHHHHcCceecC---------CCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~d---------~~~~~ 171 (417)
++||+|||.|.||+.+|..+... |++|++.+.+.. ++.+++.+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999999887 899988776622 223333334422110 00122
Q ss_pred HHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
+. ++++||+||=+++-..- .+++.++-++.+|+++|. -.+++++..+.+. ..-|+ +|+..|+--|.+.+
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rpe--r~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRPE--RFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCch--hEEEEeccCCCCcc----
Confidence 22 78999999999995544 369999999999999884 7788888766552 22232 69999998888773
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCC
Q 014863 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 249 ~~G~e~~G~Gv~~l-iav~qd~sgea~e~a~al~~aiG~ 286 (417)
+.+ +......+.+..+.+.+++..+|.
T Consensus 149 -----------~LVEvI~g~~T~~e~~~~~~~~~~~igK 176 (307)
T COG1250 149 -----------PLVEVIRGEKTSDETVERVVEFAKKIGK 176 (307)
T ss_pred -----------eeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 321 234667788999999999999994
No 119
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.58 E-value=2.4e-06 Score=94.66 Aligned_cols=153 Identities=12% Similarity=0.162 Sum_probs=110.8
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 014863 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (417)
.++||+|||.|.||..+|..+. .. |++|++.+... ...+.+ .+.|-.... ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINP-QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4689999999999999999987 77 99988876543 222222 222211000 00
Q ss_pred cCCHHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHH
Q 014863 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~~~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr 245 (417)
..+. +++++||+||=++|..... +++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 5689999999999976663 69999999999999875 667888877765 222233899999988887731
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
.-= |.++...+.+..+.+..++..+|..
T Consensus 457 -------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~ 484 (708)
T PRK11154 457 -------------LVE-VIPHAKTSAETIATTVALAKKQGKT 484 (708)
T ss_pred -------------eEE-EECCCCCCHHHHHHHHHHHHHcCCc
Confidence 111 4468889999999999999999975
No 120
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.58 E-value=1.1e-07 Score=97.93 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=95.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... ...... ..+.++++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 36889 9999999999999999999988 9998766542111 111111 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 186 vpd~a-----~~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|-.. ...++. +.+..||+|++|+-++ |-. +..+++ +-....-.||.--.|....+ ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~~~~~----Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPELNVE----LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCCCchh----hhhc--
Confidence 99554 345664 6888999999988554 421 223333 11222345677777743222 2221
Q ss_pred cccCCCceEEEeecCC-CCHHHHH-----HHHHHHHHhCCC
Q 014863 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (417)
Q Consensus 253 e~~G~Gv~~liav~qd-~sgea~e-----~a~al~~aiG~~ 287 (417)
.. +++||-- .+.+... .+..+..-+|..
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~~ 281 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGHE 281 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcCc
Confidence 23 6788753 4444443 335555556643
No 121
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.54 E-value=1.6e-07 Score=97.02 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=96.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... .+.+.. ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~~~~~~-----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----AEGDGD-----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccCcc-----ccCHHHHHhhCCEEEEe
Confidence 46789 9999999999999999999988 9998776543211 111122 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcc
Q 014863 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 186 vpd~a-----~~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~ 252 (417)
+|... ...++. +.+..||+|++|+-++ |-. +..+++ +......+||.--.|.. ... +.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~~-~~~---L~---- 245 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQI-DLE---LA---- 245 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCCC-Chh---hh----
Confidence 99754 345664 6888999999988553 421 222322 11222345666667742 211 11
Q ss_pred cccCCCceEEEeecCC-CCHHHHH-----HHHHHHHHhCCC
Q 014863 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (417)
Q Consensus 253 e~~G~Gv~~liav~qd-~sgea~e-----~a~al~~aiG~~ 287 (417)
..+.+++||-- .+.+..+ .+..+..-+|..
T Consensus 246 -----~~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 246 -----DLCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred -----hCCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 14677888863 4444333 233444445544
No 122
>PLN02306 hydroxypyruvate reductase
Probab=98.52 E-value=5e-07 Score=93.47 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=88.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCceEEEEecCCchhHHH-HHHcCc-------eecC-CCcCCHHhh
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~-------~~~d-~~~~~~~Ea 175 (417)
..+.| ++|||||+|.+|..+|+.++ .. |++|+++++........ ....|. ...+ ....+.+|+
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~el 233 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEV 233 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHH
Confidence 57999 99999999999999999986 44 99987666543211111 011221 0000 012479999
Q ss_pred hccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------hhhhhccccCCCCCCcEEEeccCCchhhHHH
Q 014863 176 ISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 176 v~~ADiViLavpd~a~-~~Vl~-eI~p~Lk~GaiL~~a~-G~~------i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (417)
+++||+|++++|-... ..++. +.+..||+|++|+-++ |-. +..+++ +......+||.--.|-.+ . .
T Consensus 234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s-g~i~gAaLDVf~~EP~~~-~---~ 308 (386)
T PLN02306 234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA-NPMFRVGLDVFEDEPYMK-P---G 308 (386)
T ss_pred HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCeeEEEEeCCCCCCCCc-c---h
Confidence 9999999999996555 45665 6889999999988553 421 233333 112233456666666321 1 1
Q ss_pred HHhhcccccCCCceEEEeecC
Q 014863 247 LYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 247 ly~~G~e~~G~Gv~~liav~q 267 (417)
+++. -+.+++||-
T Consensus 309 L~~~--------pNVilTPHi 321 (386)
T PLN02306 309 LADM--------KNAVVVPHI 321 (386)
T ss_pred HhhC--------CCEEECCcc
Confidence 3322 366788886
No 123
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.49 E-value=4.2e-07 Score=83.59 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=67.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|.... +-..-+|..+||. +.+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 46778 9999999999999999999999 9999887765 4445566678998 46899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|-...+. -.+.++.||+|++|..++.|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875431 125566799999998887764
No 124
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=2.3e-06 Score=83.27 Aligned_cols=149 Identities=20% Similarity=0.190 Sum_probs=106.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh---ccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav---~~ADiViLavpd 188 (417)
|+||.||+|.||..+.++|.+. |++|+ +++.+..+.+.+..+|.+. +.+++|.+ ...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 99875 5555677788888899764 56666654 456899999998
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEEeccchhhh-hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 189 ~a~-~~Vl~eI~p~Lk~GaiL~~a~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
..+ .++++++.|+|.+|.+|++-.--+.+. +......-+++++++-+--.+--.-.+ .|.. +-+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~-----------~G~~--lMiG 136 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAE-----------RGYC--LMIG 136 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhh-----------cCce--EEec
Confidence 844 579999999999999999876543221 111112345788887665544211111 2232 3345
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 014863 267 QDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~ 286 (417)
. +.++.+...-+|.++--
T Consensus 137 G--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 137 G--DEEAVERLEPIFKALAP 154 (300)
T ss_pred C--cHHHHHHHHHHHHhhCc
Confidence 5 67899999999998863
No 125
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.46 E-value=1.1e-05 Score=79.70 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=127.8
Q ss_pred HcCceecCCCcCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---hhh-hhccccCCCCCCcEE
Q 014863 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (417)
Q Consensus 159 ~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~-~~~~~i~~~~di~VI 233 (417)
+.|+.+ +.|..|+++++|++|+=+|-.. +.++++++.+++++|++|+.++-++ +.+ ++. .=++|+.|.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 368886 5678899999999999999777 6899999999999999998776654 222 222 226899999
Q ss_pred EeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhcccccccccch
Q 014863 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGA 312 (417)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E~~~dlfgeqtvL~G~ 312 (417)
..||-+ .+.+ .|-.+ ++ ..-++.++.++...|.+..|..- .+. .++.+..+-.|-.
T Consensus 199 S~HPaa-VPgt------------~Gq~~-i~-egyAtEEqI~klveL~~sa~k~ay~~P--------A~lvspV~DMgS~ 255 (342)
T PRK00961 199 SYHPGA-VPEM------------KGQVY-IA-EGYADEEAVEKLYEIGKKARGNAFKMP--------ANLIGPVCDMCSA 255 (342)
T ss_pred ccCCCC-CCCC------------CCcee-cc-cccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHHH
Confidence 999933 2221 12222 22 45678999999999999999751 222 2555555444444
Q ss_pred HHHH----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 313 VHGI----VESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 313 ~~a~----iea~~~~~v-~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
+.+. +..-++.++ -.|-|.+.+-..+.++|. .++.|+.++|+.+|-+.+.
T Consensus 256 VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~-tmasLme~~GI~gm~~aLn 310 (342)
T PRK00961 256 VTAIVYAGILAYRDAVTQILGAPADFAQMMADEALT-QITALMREEGIDNMEEALD 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHhHHHHhcC
Confidence 5552 333444443 679999999999999998 9999999999999998886
No 126
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.46 E-value=3.4e-06 Score=87.24 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----------------cCceecCCCcCCHHhh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~d~~~~~~~Ea 175 (417)
|||+|||+|.||..+|..+ .. |++|++.++. ....+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 4899999999999999655 46 8888766654 433444332 111110 02346788
Q ss_pred hccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 v~~ADiViLavpd~-----------a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+++||+||+|+|.. ...+++++|.+ +++|++|++.+-+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv 119 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTV 119 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeec
Confidence 89999999999954 33567788887 6999988765543
No 127
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.44 E-value=1.7e-05 Score=78.61 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=128.9
Q ss_pred HcCceecCCCcCCHHhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---hhh-hhccccCCCCCCcEE
Q 014863 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (417)
Q Consensus 159 ~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~---i~~-~~~~~i~~~~di~VI 233 (417)
+.|+.. +.|..|+++++|++|+=+|-.. +.++++++.+++++|++|+.++-++ +.+ ++. +. ++|+.|.
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgVs 196 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNVT 196 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCee
Confidence 468886 5678899999999999999777 6899999999999999998777654 222 222 22 5899999
Q ss_pred EeccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhcccccccccch
Q 014863 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGA 312 (417)
Q Consensus 234 ~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E~~~dlfgeqtvL~G~ 312 (417)
..||-+ .+.+ .|-- ++ ...-++.++.++...|.+.+|..- .+. .++.+..+-.|-.
T Consensus 197 S~HPaa-VPgt------------~~q~-Yi-~egyAtEEqI~klveL~~sa~k~ay~~P--------A~LvspV~DMgS~ 253 (340)
T TIGR01723 197 SYHPGC-VPEM------------KGQV-YI-AEGYASEEAVNKLYELGKKARGKAFKMP--------ANLLGPVCDMCSA 253 (340)
T ss_pred ccCCCC-CCCC------------CCce-Ee-ecccCCHHHHHHHHHHHHHhCCCeeecc--------hhhccchhhHHHH
Confidence 999933 2221 1212 23 367889999999999999999751 222 2455555444444
Q ss_pred HHHH----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 313 VHGI----VESLFRRFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 313 ~~a~----iea~~~~~v-~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
+.+. +..-++.++ -.|-|.+.+-..+.++|. .++.|+.++|+++|-+.+.
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~-tmasLme~~GI~gm~~aLn 308 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALT-QIHNLMEEKGIDKMEEALD 308 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 5552 333344443 679999999999999998 9999999999999998886
No 128
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.42 E-value=9.4e-07 Score=93.41 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=91.3
Q ss_pred chhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc
Q 014863 90 DEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 90 ~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (417)
.+.++|.+. ..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. .
T Consensus 241 ~d~~~R~~~-------~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~ 300 (476)
T PTZ00075 241 IDGIFRATD-------VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----V 300 (476)
T ss_pred HHHHHHhcC-------CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----e
Confidence 366777552 46889 9999999999999999999988 9998877654333 3345557886 4
Q ss_pred CCHHhhhccCCeEEEeecchhHHHHHH-HHHhcCCCCcEEEEeccchhhh-hhccccCCCCCCcEEEeccCCchhh
Q 014863 170 GDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
.+.+++++.+|+|++++.. ..++. +.+..||+|++|+.++-+.... +.. +....++++..+.|+.....
T Consensus 301 ~~leell~~ADIVI~atGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 301 VTLEDVVETADIFVTATGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred ccHHHHHhcCCEEEECCCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 5789999999999999753 44664 6888899999988665443211 110 11112577788888665444
No 129
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.37 E-value=1.9e-06 Score=84.57 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
|+||||||+|.||..++++|.+. +.+++++...+.+. +..+.+...|... +.+.++++.++|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 57999999999999999999875 01345443344433 3333444455543 568888889999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecc
Q 014863 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 99888776554 344 4444444
No 130
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.34 E-value=4.5e-05 Score=76.87 Aligned_cols=206 Identities=12% Similarity=0.032 Sum_probs=131.8
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCch------h-----------HHHHHHcCceecC-------C--CcC--CHH
Q 014863 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------S-----------FAEARAAGFTEEN-------G--TLG--DIY 173 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~------s-----------~~~A~~~G~~~~d-------~--~~~--~~~ 173 (417)
||..||..+..+ |++|++.+..... . ++.+.+.|..... . ... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999998 9999888776421 1 1222233321100 0 011 256
Q ss_pred hhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhh
Q 014863 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (417)
Q Consensus 174 Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~ 250 (417)
+++++||+||-++|..... .++.++.+.++++++|. -++++.+..+.. ..+..-+++.+|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 8899999999999977764 58889999999999874 555666666654 22222379999997777663
Q ss_pred cccccCCCceE-EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHHHcCC
Q 014863 251 GKEINGAGINS-SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (417)
Q Consensus 251 G~e~~G~Gv~~-liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v~~Gl 329 (417)
+. =+..+...+.+..+.+..++..+|... +.. .+. +.+ ++......++.-++..+.+.|.
T Consensus 146 ---------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~-v~v---~d~-----~Gf-i~nri~~~~l~EAl~l~e~g~~ 206 (314)
T PRK08269 146 ---------PLVEVSPSDATDPAVVDRLAALLERIGKVP-VVC---GPS-----PGY-IVPRIQALAMNEAARMVEEGVA 206 (314)
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcE-EEe---cCC-----CCc-chHHHHHHHHHHHHHHHHhCCC
Confidence 22 133566788899999999999999652 211 111 111 3444444455555566677789
Q ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHhcHHHHHhc
Q 014863 330 NEDLAYKNTVECIT-----GIISKIISTQGMLAVYNS 361 (417)
Q Consensus 330 ~~e~A~~~~~~~l~-----~~~~~li~e~G~~~l~~~ 361 (417)
++++.........- .|..+++-..|++.+++.
T Consensus 207 ~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~ 243 (314)
T PRK08269 207 SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYA 243 (314)
T ss_pred CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHH
Confidence 99888775543321 156666777777554443
No 131
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=1.1e-05 Score=83.15 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=124.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC----ceecCCCcCCHHhh---hccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~d~~~~~~~Ea---v~~ADiViL 184 (417)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-.+.+ +++ ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999999877666555544 232 4566664 567788999
Q ss_pred eecchh-HHHHHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCc
Q 014863 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~a-~~~Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv 259 (417)
.|+-.. ...++++++|+|.+|.+|+|-+--. +....+ .-.+++.||..--.+-..-. -.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSGGEeGA-----------~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSGGEEGA-----------RHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEecccccccccc-----------ccC-
Confidence 999754 3568899999999999999876432 222222 23467788866543311110 012
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhccccccc--ccchHHH--------HHHHHHHHHHH-cC
Q 014863 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI--LLGAVHG--------IVESLFRRFTE-NG 328 (417)
Q Consensus 260 ~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtv--L~G~~~a--------~iea~~~~~v~-~G 328 (417)
|+ |-|.. +.++.+.+.-++..|-.. ...++..+..|+.+. ..=++|. +|--.|+.+.. .|
T Consensus 139 PS-iMpGG--~~eay~~v~pil~~IaAk------~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lg 209 (473)
T COG0362 139 PS-IMPGG--QKEAYELVAPILTKIAAK------VDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLG 209 (473)
T ss_pred CC-cCCCC--CHHHHHHHHHHHHHHHhh------cCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcC
Confidence 22 33444 678999999999999764 113434444443311 0011111 45557777776 88
Q ss_pred CCHHHH
Q 014863 329 MNEDLA 334 (417)
Q Consensus 329 l~~e~A 334 (417)
++.++-
T Consensus 210 ls~~ei 215 (473)
T COG0362 210 LSAEEI 215 (473)
T ss_pred CCHHHH
Confidence 988764
No 132
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.33 E-value=1.1e-05 Score=85.50 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-----------------C--ceecCCCcCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------------G--FTEENGTLGD 171 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-----------------G--~~~~d~~~~~ 171 (417)
||||+|||+|.+|..+|..|.+. |.|++|+.. +.+....+...+. + +.. ..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcC
Confidence 58999999999999999999887 223667544 4433333332111 1 111 345
Q ss_pred HHhhhccCCeEEEeec-ch--------------hHHHHHHHHHhcCCCCcEEEEec----cchhh---hhhccccCCCCC
Q 014863 172 IYETISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLG---HLQSMGLDFPKN 229 (417)
Q Consensus 172 ~~Eav~~ADiViLavp-d~--------------a~~~Vl~eI~p~Lk~GaiL~~a~----G~~i~---~~~~~~i~~~~d 229 (417)
..+++++||++|+||| |. .+.++.++|.+++++|++|++-+ |..-. .+.+ . .++
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~---~-~~g 147 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---N-SKG 147 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh---h-CCC
Confidence 6788999999999996 22 33467778999999999876443 44311 1211 0 112
Q ss_pred Cc-EEEeccC--CchhhHHHHHhhcccccCCCceEEE-eec-CCCCHHHHHHHHHHHHHhCC-Ccccccchhhhhhhhcc
Q 014863 230 IG-VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSF-AVH-QDVDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIF 303 (417)
Q Consensus 230 i~-VI~v~Pn--~pg~~vr~ly~~G~e~~G~Gv~~li-av~-qd~sgea~e~a~al~~aiG~-~~~iett~~~E~~~dlf 303 (417)
.+ .+...|- .||..+++++. .+-++ .-. .+...++.+.+.++...+-. ..++.++. ++-++..+
T Consensus 148 ~~f~v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~-~~AE~~K~ 217 (473)
T PLN02353 148 INFQILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL-WSAELSKL 217 (473)
T ss_pred CCeEEEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH-HHHHHHHH
Confidence 33 3556662 34444433332 44443 212 22225678888888887742 22333333 22222222
Q ss_pred cccccccchHH----HHHHHHHHHHHHcCCCHHHHHH
Q 014863 304 GERGILLGAVH----GIVESLFRRFTENGMNEDLAYK 336 (417)
Q Consensus 304 geqtvL~G~~~----a~iea~~~~~v~~Gl~~e~A~~ 336 (417)
- .++.- +++..+.+.+-+.|++..+...
T Consensus 218 ~-----eN~~ra~~Iaf~NEla~lce~~giD~~eV~~ 249 (473)
T PLN02353 218 A-----ANAFLAQRISSVNAMSALCEATGADVSQVSH 249 (473)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2 22222 2666677777777777665544
No 133
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.33 E-value=1.8e-06 Score=80.66 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC-----------------CCcCCHHh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-----------------GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d-----------------~~~~~~~E 174 (417)
|||+|||+|-+|..+|..|.++ |++|+ |.+.+++..+.. ..|..+.. ....+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99875 565555433332 22321100 01357788
Q ss_pred hhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEEEec
Q 014863 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 175 av~~ADiViLavpd~----------a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++++|++|+|+|.. ...++++.|.++++++++|++-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 899999999999822 23467788999999999887554
No 134
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.27 E-value=5.1e-06 Score=86.54 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4788 9999999999999999999988 9998887655333 4566778886 356788999999999988
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~ 215 (417)
.. ..++. +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 64 45565 4778899999988766544
No 135
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.26 E-value=4.7e-06 Score=83.20 Aligned_cols=94 Identities=22% Similarity=0.357 Sum_probs=72.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| +|++|||+|.+|.++++.|+.. |.+|.+.+|+.. ..+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 35678 9999999999999999999998 988888877643 3566677787631 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+.. +-++....|+++.+|++.+
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEc
Confidence 98643 2245677899999988765
No 136
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.26 E-value=4.9e-06 Score=82.09 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... .+.+.++++.++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665 34444344445555566421 15689999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
+.++....+ +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988876654 4565 4444444
No 137
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.23 E-value=6.5e-06 Score=86.26 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++.++...+ ...+...|+. +.+.+++++++|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3688 9999999999999999999998 9998887765444 3455566876 357889999999999998
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~ 215 (417)
.. ..++. +....||+|.+|+.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 54 33565 5778899999988777665
No 138
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=5.1e-06 Score=83.37 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=61.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |+|+|||.| .||.++|.+|.+. |..|.++++.. .++++++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 36889 999999996 9999999999999 99998876541 257788999999999
Q ss_pred eecchhHH-HHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~-~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++..... ..+ +++|++|++++
T Consensus 209 avg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ecCChhcccHhh------ccCCcEEEEec
Confidence 99976442 233 89999888763
No 139
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.15 E-value=1.6e-05 Score=67.24 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.||||||+|.+|..+...+++. ..+.+++...+.+. +....++..|+.. ..+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999999887 11446554445444 3344567788875 788999987 79999999999
Q ss_pred hhHHHHHHHHHh
Q 014863 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~a~~~Vl~eI~p 200 (417)
..+.++......
T Consensus 73 ~~h~~~~~~~l~ 84 (120)
T PF01408_consen 73 SSHAEIAKKALE 84 (120)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 999998877654
No 140
>PLN02494 adenosylhomocysteinase
Probab=98.15 E-value=1e-05 Score=85.56 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+.. .+.+++++++|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3788 9999999999999999999988 9998776654332 34667788873 47889999999999876
Q ss_pred cchhHHHHH-HHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl-~eI~p~Lk~GaiL~~a~G~ 214 (417)
... .++ .+.+..||+|.+|+.++-+
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence 643 333 5677889999998866544
No 141
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.14 E-value=0.00011 Score=73.96 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=98.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC--------cCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~--------~~~~~Eav~~ADiVi 183 (417)
|||+|+|.|.||.-++..|.+. |.+|.+..|. +..+.-.+.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 8777776665 22556666677543211 112235567899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEE-Eeccch-hhhhhccccCCCCCCcEE-Eecc-----CCchhhHHHHHhhccccc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVI-AVCP-----KGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~-~a~G~~-i~~~~~~~i~~~~di~VI-~v~P-----n~pg~~vr~ly~~G~e~~ 255 (417)
++|+-.+..++++.+.|.+++++.|. +--|.. .+.+.. .+|.. +++ .+.+ ++|+.+. ..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---------~~ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---------HT 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---------Ee
Confidence 99999999999999999999998654 556775 333443 44544 332 2333 4444442 11
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 256 G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
|.|...+=-+..+.+ +..+...+.|...|..
T Consensus 140 g~g~~~ig~~~~~~~-~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTVIGELRGGRD-ELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEEEccCCCCch-HHHHHHHHHHHhCCCC
Confidence 334444211122222 4455555566777765
No 142
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.12 E-value=1.6e-05 Score=82.99 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=73.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+.| ++|+|||+|.+|..+++.++.. |.+|++.++. +.....|...|+.. .+.+++++.+|+||.++
T Consensus 199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~at 265 (413)
T cd00401 199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEECC
Confidence 4788 9999999999999999999998 9988776554 44578888899863 46678899999999998
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~ 214 (417)
... .++. +....|++|.+|+.++.+
T Consensus 266 G~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 643 3454 467889999988766544
No 143
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.11 E-value=1.3e-05 Score=70.80 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=73.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCC----------cCCHHhhhccCCeEE
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~----------~~~~~Eav~~ADiVi 183 (417)
|+|||.|+||.-+|..|.+. |++|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 79999999999999999988 99988877753 3455566677542111 111124567899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccch-hhhhhc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQS 221 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~-i~~~~~ 221 (417)
+++|-.+..++++.+.+++.+++.| ++--|+. ...+.+
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~ 112 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE 112 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH
Confidence 9999999999999999999998654 4666776 334443
No 144
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.11 E-value=1.2e-05 Score=80.56 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+.| ++|+|||.|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+|
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 678 9999999999999999999986 5 4677788776666677777776421 0234567889999999999
Q ss_pred cchhHHHHHHHHHhcC-CCCcEEEEec
Q 014863 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~L-k~GaiL~~a~ 212 (417)
|.....++++.+.... .++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543332 2455666554
No 145
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.00 E-value=2.2e-05 Score=67.53 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.6
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcC-ceecCCCcCCHHhh-hccCCeEEEeecc
Q 014863 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G-~~~~d~~~~~~~Ea-v~~ADiViLavpd 188 (417)
||+||| .|.+|..++..|.+. .++++... .++.+.....+...+ +....-...+.++. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 689999 589999999999884 15554433 222111111122222 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999887777778999999999885
No 146
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.95 E-value=1.9e-05 Score=79.29 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHc---C--ceecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
++|+|||+|.||..+++.+.... + .+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~-----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR-----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCA 196 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEe
Confidence 89999999999999998776520 3 47888888766655555542 4 332 46788999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
||.. ..++.. ..+++|++|.
T Consensus 197 T~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecH--HHcCCCCEEE
Confidence 9865 233321 4578898543
No 147
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=97.95 E-value=0.00049 Score=66.62 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=127.8
Q ss_pred HHcCceecCCCcCCHHhhhccCCeEEEeecc-hhHHHHHHHHHhcCCCCcEEEEeccchhh-hhhccccCCCCCCcEEEe
Q 014863 158 RAAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAV 235 (417)
Q Consensus 158 ~~~G~~~~d~~~~~~~Eav~~ADiViLavpd-~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~-~~~~~~i~~~~di~VI~v 235 (417)
++.|+.+ .++..|++++||+||.=+|- ..|+++++++.+.+++|++|+.++-+... |.....-.=+++.+|-..
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 3467775 56788999999999999884 45679999999999999999988766432 211000122568899999
Q ss_pred ccCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHH
Q 014863 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG 315 (417)
Q Consensus 236 ~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a 315 (417)
||-+ .+.+ +|--+ |+ ..-++.++.+..-+|..-.-+. .+. ..-.|.|-.+-.|..+.+
T Consensus 199 hpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk------~pa~llgpvcdmcsavta 256 (343)
T COG4074 199 HPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFK------VPAYLLGPVCDMCSAVTA 256 (343)
T ss_pred CCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-ccc------CcHHhhchHHHHHHHHHH
Confidence 9944 3442 34433 44 7778888888776665543322 221 122577787778888888
Q ss_pred HHHHH---HHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014863 316 IVESL---FRRFT--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 316 ~iea~---~~~~v--~~Gl~~e~A~~~~~~~l~~~~~~li~e~G~~~l~~~vs 363 (417)
++-+. |+-+| -.|-|.+-|...+.+.+. .+++++.+.|++.|-+.+.
T Consensus 257 ivyagll~yrdavt~ilgapadfaqmma~eal~-qi~~lmee~gidkmeeald 308 (343)
T COG4074 257 IVYAGLLTYRDAVTDILGAPADFAQMMAVEALQ-QIAKLMEEEGIDKMEEALD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHHHHhhhhHHHhhcC
Confidence 66553 33332 469999999999999998 9999999999999999886
No 148
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.92 E-value=9.2e-05 Score=73.93 Aligned_cols=98 Identities=21% Similarity=0.240 Sum_probs=70.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecC-CC--c----CCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEEN-GT--L----GDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d-~~--~----~~~~Eav~~ADiVi 183 (417)
|||+|||.|.||+-+|-.|.+. |.+|.+..|..+ ..+.-. +.|+...+ +. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 998888777532 233333 23543210 00 0 01112235789999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccchh
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL 216 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL-~~a~G~~i 216 (417)
++||-....++++.+.|++.++++| .+--|+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 9999999899999999999998865 46678863
No 149
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=3.5e-05 Score=77.30 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=59.7
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|+||| .|.||.++|.+|.+. |+.|.++..+. .++++++++||+|+.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5889 9999999 999999999999998 99988874221 1356888999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.... +++. ++++|++|++++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 997654 2221 289999888764
No 150
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.87 E-value=3.7e-05 Score=77.73 Aligned_cols=94 Identities=17% Similarity=0.092 Sum_probs=63.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH---HcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
+++||||+|.||..+++.+.... ...+|.+++|..++....+. +.|+.. ..+.+.+|++++||+|+.|||.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTPS 202 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecCC
Confidence 78999999999999998886641 02367777776554433333 345321 0157899999999999999986
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
.. .++. ...++||+.|.-++...
T Consensus 203 ~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 203 RK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CC--cEec--HHHcCCCCEEEecCCCC
Confidence 32 2332 23468999877665443
No 151
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.86 E-value=2.2e-05 Score=69.34 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=67.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC---ceecCCCcCCHHhhhccCCe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~Eav~~ADi 181 (417)
..++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+ +.. ....+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 47889 9999999999999999999999 88 48899998777667776652 211 014456678899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCC-cEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~G-aiL~~a~ 212 (417)
||.+||.... .+-++..+...+. .+++|.+
T Consensus 79 vI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 9999996654 1222333322222 3677664
No 152
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.85 E-value=0.00019 Score=70.17 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
++||+|||+ |.||..++..+.+. .+++++...+.+..........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 479999998 99999999988764 15666554544332222223334432 468888888999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeccchhhh
Q 014863 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGH 218 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~ 218 (417)
...+++..... .|. +|+-..|++...
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 98777765543 454 343355776543
No 153
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.85 E-value=4.5e-05 Score=71.99 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=51.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc-cCCeEE
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~-~ADiVi 183 (417)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.++... ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 357899 9999999999999999999999 9998866655333333333446553 23455553 799998
Q ss_pred Eeecc
Q 014863 184 LLISD 188 (417)
Q Consensus 184 Lavpd 188 (417)
.|..-
T Consensus 91 p~A~~ 95 (200)
T cd01075 91 PCALG 95 (200)
T ss_pred ecccc
Confidence 66553
No 154
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=6.8e-05 Score=74.81 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=59.8
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|+|||. |.||..+|..|.+. |..|.++.. + ..++++.+++||+||.+
T Consensus 155 ~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEEe
Confidence 5889 99999999 99999999999998 998887621 1 12577889999999999
Q ss_pred ecchhHH-HHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~-~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++..... ..+ +++|++|++++
T Consensus 209 vg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 209 IGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred cCccccCCHHH------ccCCcEEEEec
Confidence 9976552 222 89999988763
No 155
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.78 E-value=4.3e-05 Score=79.74 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.+.| ++|+|||+|.||..+++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 3778 9999999999999999999988 87 788888876655567777664310 123566788999999999
Q ss_pred ecchh
Q 014863 186 ISDAA 190 (417)
Q Consensus 186 vpd~a 190 (417)
|+...
T Consensus 250 T~s~~ 254 (423)
T PRK00045 250 TGAPH 254 (423)
T ss_pred CCCCC
Confidence 98443
No 156
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.73 E-value=0.0002 Score=70.40 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--cCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
|+||||||+|.||..+++.|.+. .++++......+......... .+... +.+.+++-.+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 57999999999999999999775 134433333222111111111 24443 56777764569999999999
Q ss_pred hhHHHHHHHHHhcCCCCc-EEEEecc
Q 014863 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
..+.++...++ +.|+ +++...|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 98877776654 3455 4444444
No 157
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.70 E-value=0.00043 Score=68.79 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=57.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH--cCceec--CC---CcCCHHhhhccCCeE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--d~---~~~~~~Eav~~ADiV 182 (417)
|+||+|||.|+||..+|..+... |+ +|++.+...+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 68999999999999999999877 65 777776643322221211 111000 00 12345 568999999
Q ss_pred EEeec--c--------------hhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 183 LLLIS--D--------------AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 183 iLavp--d--------------~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|+++. . ....+++++|.++..++.+|+.+-...
T Consensus 75 ii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d 123 (307)
T PRK06223 75 VITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD 123 (307)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 99863 2 112345556666664443444554443
No 158
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.67 E-value=0.00012 Score=73.47 Aligned_cols=91 Identities=22% Similarity=0.184 Sum_probs=65.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc---CceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|+|||+|.||..++..+.... +. +|.+++|...+..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 89999999999999999997530 44 6788888766555555543 33321 3578899999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
... .++. ..++||+.|.-++...
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAFT 220 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCCC
Confidence 654 3343 2478998887665543
No 159
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.66 E-value=0.00035 Score=67.81 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=103.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----------cCceec--------C-----
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N----- 166 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------d----- 166 (417)
|+.|+|||.|.||..+|+-...+ |++|++.+++ .+.+.+|.+ .+.... +
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999999 9999887665 333333332 121110 0
Q ss_pred -CCcCCHHhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchhhhhhccccCCCCCCcEEEeccCCchh
Q 014863 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 167 -~~~~~~~Eav~~ADiViLavpd~a~--~~Vl~eI~p~Lk~GaiL~-~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~ 242 (417)
.+..+..+++++||+||=++-...- .+++++|-...++.+++. -.+.+.+..+.. .....-.|...|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1145677889999999866654333 246666766677887764 566777766644 222334788888877777
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
++. +-+ +| -+.+.+.+.......+.+.+|-.
T Consensus 161 vMK-LvE------------Vi-r~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE------------VI-RTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh------------hh-cCCCCCHHHHHHHHHHHHHhCCC
Confidence 753 222 12 26678888888889999999965
No 160
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.61 E-value=0.0001 Score=76.86 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+..+..+.+...|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 4778 9999999999999999999988 8 5788888876555566666664310 124566888999999999
Q ss_pred ecchh
Q 014863 186 ISDAA 190 (417)
Q Consensus 186 vpd~a 190 (417)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97443
No 161
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.58 E-value=0.00053 Score=67.48 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEec-CCchhH--HHHHH-----cCceecCCCcCCHHhhhccCCe
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~d~~~~~~~Eav~~ADi 181 (417)
|+||+||| +|.||..+++.+.+. .+++++...+ .++... ..+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 46999999 699999999999864 1677655554 332211 12222 24442 4677777567999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhH--HHHHh-hcccccCC
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYV-QGKEINGA 257 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v--r~ly~-~G~e~~G~ 257 (417)
|+.++||..+.+++..... .|. +|+-..|++....+.-...-.+.---+.+.||++--+. -++.+ ..+-....
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~ 148 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDY 148 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCC
Confidence 9999999998887766543 344 45545688644332200011111123566777764441 11111 10000011
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014863 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~q----d-~sgea~e~a~al~~aiG~ 286 (417)
.+- ++-.|. | +||.++.+++.+....+.
T Consensus 149 die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~ 181 (266)
T TIGR00036 149 DIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE 181 (266)
T ss_pred CEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 122 233333 2 488999988888877653
No 162
>PLN00203 glutamyl-tRNA reductase
Probab=97.54 E-value=0.00032 Score=75.46 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=60.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+.+ ++|+|||.|.||..++++|... |. +|++.+|+..+....+... |....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 678 9999999999999999999988 86 6888888766656666554 2211000134667889999999999
Q ss_pred ecch---hHHHHHHHHH
Q 014863 186 ISDA---AQADNYEKIF 199 (417)
Q Consensus 186 vpd~---a~~~Vl~eI~ 199 (417)
|+-. ...+.++++.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 8632 2345665554
No 163
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.48 E-value=0.0017 Score=67.43 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=93.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-------------------HHHHHHcC-ceecCCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G-~~~~d~~~~~ 171 (417)
.+|+|||+|-+|..+|..+.++ |++| +|.+-+++. .+.+.+.| +.. +++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 7999999999999999999999 9886 465544321 23455555 332 345
Q ss_pred HHhhhccCCeEEEeecchhH----------HHHHHHHHhcCCCCcEEEEe----ccch---hhh-hhc-cccCCCCCCcE
Q 014863 172 IYETISGSDLVLLLISDAAQ----------ADNYEKIFSCMKPNSILGLS----HGFL---LGH-LQS-MGLDFPKNIGV 232 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~----------~~Vl~eI~p~Lk~GaiL~~a----~G~~---i~~-~~~-~~i~~~~di~V 232 (417)
.++ ++.||++++|||...- ....+.|++.|++|++|++= .|.+ +.. ++. .++.++.|+.
T Consensus 79 ~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~- 156 (436)
T COG0677 79 PEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY- 156 (436)
T ss_pred hhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee-
Confidence 554 4599999999983211 12335799999999987643 3443 122 222 4566666533
Q ss_pred EEecc--CCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014863 233 IAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 233 I~v~P--n~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~ 287 (417)
+.-+| -.||...+++-. .+-+|. .++++..+.+.++-+.+=..
T Consensus 157 laysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~~ 201 (436)
T COG0677 157 LAYSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVEG 201 (436)
T ss_pred EeeCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheEE
Confidence 33333 233555443332 333332 45778888888887776544
No 164
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.48 E-value=0.00025 Score=72.56 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++++|||.|.|+..+++.+..-. .+ +|.+++|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEecC
Confidence 78999999999999999887641 33 788888875543333322 24321 015689999999999999997
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
......+++. ..++||+.|.-++.+.
T Consensus 203 S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 203 DKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred CCCCCceecH--HHcCCCcEEEecCCCC
Confidence 5332234431 3568999877665554
No 165
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.46 E-value=0.00031 Score=71.36 Aligned_cols=74 Identities=11% Similarity=0.239 Sum_probs=50.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
.||+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+.++...+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 6899999999999999999765 156665444443211 1222234332 35677778899999999998777
Q ss_pred HHHH
Q 014863 192 ADNY 195 (417)
Q Consensus 192 ~~Vl 195 (417)
.+..
T Consensus 74 ~~~~ 77 (324)
T TIGR01921 74 IPEQ 77 (324)
T ss_pred HHHH
Confidence 5444
No 166
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.43 E-value=0.00071 Score=69.01 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=63.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHHcCceec-----------CC---CcCCHHhh
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYET 175 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------d~---~~~~~~Ea 175 (417)
|.||||+|+|.||..+++.+.+. .+++++...+...... ..+...|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 47999999999999999998764 1567665555433222 22333343200 00 02356777
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
..++|+|+.++|+....+..+.. ++.|+.+++.+|-
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78999999999999888877644 3457777777763
No 167
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.43 E-value=0.0004 Score=60.04 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.5
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEE-EecCC--chhHHHHHH--cCceecCCCcC-CHHhhhccCCeEEEe
Q 014863 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~d~~~~-~~~Eav~~ADiViLa 185 (417)
||+||| .|.+|..+.+.|.+. ..++++. ..++. .+.+..... .++.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1344333 33332 122322211 11211 0011 233456999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+|.....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888776 4578888888774
No 168
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00048 Score=70.18 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=67.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH---HcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+...++|||+|.|+..|.+.++.-. ++ +|.++.|..+...+.+. +.+... -..+.+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~-----~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVR-----DIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhC-----CccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 3478999999999999999998751 44 67788887655444442 333210 11367899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
||... .++. ...++||+.|.-+++.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 3332 2457899988877664
No 169
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.42 E-value=0.00058 Score=59.62 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=60.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH---HHHH-----HcCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
+||+|+|+ |.||..+++.+.+. .++++..+.++..... +... ..|+.. ..+.++++..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 1777665554433100 0011 234443 46889999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchhh
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~Ga-iL~~a~G~~i~ 217 (417)
|-.+-|+...+.++....+ |. +|+=..|++-.
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE 104 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH
Confidence 9999888777777765544 44 45567888743
No 170
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00044 Score=69.77 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 88999999999999998876431 44 677777765554444432 24421 11567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|.. + .++. ..+++|+.|.-++.+.
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCC
Confidence 965 2 3443 5679999887666543
No 171
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.41 E-value=0.00035 Score=70.09 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=65.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++++|||.|.||..+++.+..- +.+ +|.+++|..++..+.+.+ .|+.. ..+.+.+|++.+||+|+.+|
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSIT 190 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEec
Confidence 8899999999999999998774 144 688888776554444433 24321 11568999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+... .+++ ...++||+.|.-++.+.
T Consensus 191 ~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 191 NSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred CCCC--cEec--HHHcCCCceEEecCCCC
Confidence 9542 3332 23568888777665543
No 172
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.40 E-value=0.00034 Score=64.88 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=62.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc----CceecCCCcC---CHHhhhcc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLG---DIYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~---~~~Eav~~ 178 (417)
.+++ +++.|+|. |.+|.+++..|.+. |.+|++..|+..+..+.+... +......... +..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 5678 99999996 99999999999988 888888777644433333322 2110000012 23478899
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+||.++|..... ........+++.+++|..
T Consensus 98 ~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999999977651 112222345566777653
No 173
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.39 E-value=0.00038 Score=70.35 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc----CceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++++|||+|.||..+++.|... .++ +|.+++|..++..+.+.+. |+... .+.+.++++.+||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEec
Confidence 7999999999999999999753 054 6888888766555555432 54321 1467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
|... .++. ...+++|+.|...+
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEeeC
Confidence 9643 2332 12478898776443
No 174
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.38 E-value=0.0011 Score=66.48 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=44.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----------cCceecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~d~~~~~~~Eav~~AD 180 (417)
+||+|||.|.||..+|..+... |+ +|++.+.........+.+ .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999887 76 776666543321112110 01110 1246665 78999
Q ss_pred eEEEeec
Q 014863 181 LVLLLIS 187 (417)
Q Consensus 181 iViLavp 187 (417)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999998
No 175
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.36 E-value=0.00062 Score=67.49 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=60.6
Q ss_pred CEEEEEcccchH-HHHHHHHHhhhhhhcCC--ceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEe
Q 014863 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG-~AiA~~Lr~s~~~~~~G--~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLa 185 (417)
.||||||+|.++ ..++..+++. + +.++ +.++..++..+.+.+.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 789999999665 5688888876 4 3333 33455556667888888751 26789998875 5999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 014863 186 ISDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL 208 (417)
+|+..|.++... .|+.|+.|
T Consensus 75 tp~~~H~e~~~~---AL~aGkhV 94 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHV 94 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEE
Confidence 999999987743 34455543
No 176
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.36 E-value=0.00033 Score=73.30 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..+.| ++|.|||.|-||.+++.+|.+. |. ++++.+|+..+..+.+.+.+ .... ...+..+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~~--~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASAH--YLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeEe--cHHHHHHHhccCCEEE
Confidence 35778 9999999999999999999988 86 78888998777777777665 2210 1344567889999999
Q ss_pred Eeecch
Q 014863 184 LLISDA 189 (417)
Q Consensus 184 Lavpd~ 189 (417)
.||+..
T Consensus 248 ~aT~a~ 253 (414)
T PRK13940 248 AAVNVL 253 (414)
T ss_pred ECcCCC
Confidence 999843
No 177
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.36 E-value=0.0011 Score=64.24 Aligned_cols=92 Identities=24% Similarity=0.304 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
++|+|||||.+|..+..-+++- ..+++.++. +|..++..+.+...+.. .+.+++|.+++.|+|+=|-.+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 4899999999999999988763 012444444 44433333333333333 25789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G~ 214 (417)
..+...+++. .|. +|+.+-|-
T Consensus 73 v~e~~~~~L~---~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKILK---AGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHHh---cCCCEEEEechh
Confidence 9988877654 343 55566553
No 178
>PRK06046 alanine dehydrogenase; Validated
Probab=97.34 E-value=0.00053 Score=69.31 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||+|.||..++.++... .++ .|.+++|..++..+.+.+ .|+... .+.+.+++++ +|+|++||
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVT--VAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999754 145 455566654433333332 243210 1457888887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|... .+++ ...+++|+.|.-++..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3332 2346899987755544
No 179
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.33 E-value=0.0005 Score=68.33 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC-----ceecCCCcCCHHhhhccCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~Eav~~AD 180 (417)
.+++ ++|.|||.|-+|.+++..|.+. |. +|.+.+|...+..+.+...+ ... ....+..+.+.++|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAAD 194 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCC
Confidence 4567 8999999999999999999998 87 78888887666555555431 111 00223455678899
Q ss_pred eEEEeecchh
Q 014863 181 LVLLLISDAA 190 (417)
Q Consensus 181 iViLavpd~a 190 (417)
+||.+||...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999999653
No 180
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.32 E-value=0.00049 Score=70.55 Aligned_cols=94 Identities=24% Similarity=0.267 Sum_probs=75.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
--+.| |++.|.|||-.|...|+.+|.. |.+|+|..-..-+. -+|.-+||. +...+|+++.+|++|.+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~A-leA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIRA-LEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchHH-HHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 35677 9999999999999999999988 99998876543443 455568998 57899999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl~-eI~p~Lk~GaiL~~a~G~~ 215 (417)
|-... |+. +.+..||+|++|.-++-|+
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEecccccc
Confidence 98754 443 5666799999998776675
No 181
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.30 E-value=0.00062 Score=70.16 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=65.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-C-CCcCCHHhhhccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d-~~~~~~~Eav~~ADiViLa 185 (417)
+.+ .+|.|||.|.+|...++.++.. |.+|++.+++..+....+...|.... . ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 455 7899999999999999999988 98888777654432233333443210 0 0012356788999999999
Q ss_pred ecc--hhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd--~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 842 2223333 45667789999888765
No 182
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.30 E-value=0.0017 Score=65.00 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.+|||||+|++|.-++..+.+. .++++....+.+. ..++.+++.|+... ..+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~~---~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKTS---AEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCEE---ECCHHHHhcCCCCCEEEECCC
Confidence 4899999999999998888764 1455543333333 23567888887531 346777774 6788999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+..|.+...... +.|+.|++-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 999988876554 45776654443
No 183
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.27 E-value=0.00027 Score=71.07 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH---cCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++++|||+|.||..+++.+..-+ ++ +|.++.|+.++..+.+.. .|+.. ..+.+.++++++||+|+.+||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEccC
Confidence 78999999999999999998752 44 677888775433333322 24432 125789999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
......+++ ...+++|+.|.-++..
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 655212332 2357888877755544
No 184
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.27 E-value=0.0016 Score=65.71 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=65.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhc-----cCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~-----~ADiViL 184 (417)
.||||||+|++|..++..+.+. .++++....+.+. +..+.|++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888765 1455544443333 3446688888763 1356788874 5899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
++|...+.+...... +.|+.+++...
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999999988877654 35777776544
No 185
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.25 E-value=0.00044 Score=67.75 Aligned_cols=93 Identities=19% Similarity=0.103 Sum_probs=60.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc---CceecCCCcCCHHh-hhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~E-av~~ADiVi 183 (417)
.++ +++.|+|.|.+|.+++..|.+. |.+|.+.+|...+..+.+... |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 457 8999999999999999999998 888888888755444444432 2211 122332 346899999
Q ss_pred EeecchhHHHHHH-H-HHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYE-K-IFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~-e-I~p~Lk~GaiL~~a 211 (417)
.++|.....++-+ . -...++++.+++|+
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999753322100 0 02346677777655
No 186
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.24 E-value=0.00078 Score=68.06 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=65.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHH---HHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
-++++|||+|.|+..+++.+..-. .+ +|.+++|..++..+.+ .+.|+... .+.+.++++++||+|+.+|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEec
Confidence 378999999999999999987641 33 7888888765544333 22344321 1468899999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+... .+++ ...++||+.|.-++.+.
T Consensus 201 ~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 201 PSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 8442 3442 13578999877665543
No 187
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0038 Score=60.86 Aligned_cols=220 Identities=11% Similarity=0.049 Sum_probs=129.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
..++|||.|..|.+..+..-+- ++. ++. ..+++.+.|+ .++..+ .+.+...+-.++||.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs~-i~srS~~~a~~LaE~~~a~p-----~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CSA-ISSRSRDRAQNLAETYVAPP-----LDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--ehh-hhhcCHHHHhhchhccCCCc-----cchhhChhhhceEEecch
Confidence 6799999999999954433222 222 111 1223334443 333332 344445556678888888
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhh-hhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~-~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
+..+.++.... ..+||++|..++|++-.. +.. .=+.+.--..+||+.......+-.++- ++.-..|+ .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 87555555433 347899999999997332 211 101234446799998877766655553 23332232 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccch-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA-VHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~-~~a~iea~~~~~v~~Gl~~e~A~~~~~~~l~~~ 345 (417)
. +.....++.+|+.-+|+....- .|..-.+|+...+..+. +....--..+....+|.++-++.-+..- +.++
T Consensus 146 a--D~~g~ai~q~la~emgg~~f~V----~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~p-L~~g 218 (289)
T COG5495 146 A--DDVGYAIVQSLALEMGGEPFCV----REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGP-LARG 218 (289)
T ss_pred c--cccccHHHHHHHHHhCCCceee----chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehH-HHHH
Confidence 3 3345567889999999874221 35556788887666333 3334444567778999999888775222 3346
Q ss_pred HHHHHHHhcHH-HHHhccc
Q 014863 346 ISKIISTQGML-AVYNSFS 363 (417)
Q Consensus 346 ~~~li~e~G~~-~l~~~vs 363 (417)
..+-+.+.|.. .|---|+
T Consensus 219 ~~~n~~qrg~a~aLTgpVa 237 (289)
T COG5495 219 ALENTLQRGQACALTGPVA 237 (289)
T ss_pred HHHHHHHhhhhhcccCCcc
Confidence 66777777764 4444444
No 188
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.19 E-value=0.0007 Score=70.82 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|.-++..+.|.+.|... -.+.+..+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 44788 9999999999999999999999 85 78899999888899999999542 124456778999999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+|.
T Consensus 245 sTs 247 (414)
T COG0373 245 STS 247 (414)
T ss_pred ecC
Confidence 986
No 189
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.18 E-value=0.001 Score=61.45 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.7
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..|+| ++|.|||.|-| |..+++.|... |.+|.+.+|.. .+..+.+.+||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 46889 99999999997 88899999998 88887777641 145678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999653 2321 1356777777654
No 190
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.18 E-value=0.0035 Score=63.32 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=45.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHH-------cC--ceecCCCcCCHHhhhc
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AG--FTEENGTLGDIYETIS 177 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G--~~~~d~~~~~~~Eav~ 177 (417)
.+. +||+|||.|++|.+++..+... |+ ++++.+.+.+.....+.+ .+ ... ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 355 8999999999999999999887 73 666666543322122221 11 111 0124555 789
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|+++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999999
No 191
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0017 Score=67.52 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--------------C---CCcCCHHh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------N---GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------d---~~~~~~~E 174 (417)
|||+|||.|-.|...+..|.+. |++|+.. +.++...+. ...|..+. + ..++|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~v-Did~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCV-DIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEE-eCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999999 9987654 443322222 22222111 0 01468889
Q ss_pred hhccCCeEEEeecchh----------HHHHHHHHHhcCCCCcEEE
Q 014863 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 175 av~~ADiViLavpd~a----------~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+++++|++|+|||... ...+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 9999999999997321 2346678999997766654
No 192
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.17 E-value=0.0021 Score=64.23 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=46.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc-------Cc--eecCCCcCCHHhhhccCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~--~~~d~~~~~~~Eav~~AD 180 (417)
+||+|||.|.+|.++|..|... |+ ++++.++...+....+.+. +. .. ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999988 74 6777777654433333321 11 11 12344 4578999
Q ss_pred eEEEeecc
Q 014863 181 LVLLLISD 188 (417)
Q Consensus 181 iViLavpd 188 (417)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999975
No 193
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.17 E-value=0.00057 Score=67.41 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCc-CCHHhhhccCCeEEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~Eav~~ADiViL 184 (417)
.+++ +++.|||.|-+|.+++..|.+. | .+|++.+|+..+..+.+...+... .-.+ .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 9999999999999999999988 8 488888887655545544433110 0001 133467789999999
Q ss_pred eecchhH
Q 014863 185 LISDAAQ 191 (417)
Q Consensus 185 avpd~a~ 191 (417)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
No 194
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.14 E-value=0.0029 Score=64.53 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=71.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhh-cCCceEEEEecCC---chhHHHHHH-----------cCceec-C-CCcCCHHh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEE-N-GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~-~~G~~Vivg~r~~---~~s~~~A~~-----------~G~~~~-d-~~~~~~~E 174 (417)
.||+|||.|+=|.++|+.+..+-.+. -+..+|..+.+.. .+.....+- -|+... + -++.|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 78999999999999999987762222 1122444443321 110111110 011100 0 12578899
Q ss_pred hhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchh
Q 014863 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~Vl~eI~p~Lk~Gai-L~~a~G~~i 216 (417)
++.+||+++..+|.+-...+.++|..+++++.. |+.+-||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 778888753
No 195
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.00065 Score=69.60 Aligned_cols=192 Identities=18% Similarity=0.153 Sum_probs=113.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-H-cCceecCCCcCCHHhhh---ccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A-AGFTEENGTLGDIYETI---SGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~-~G~~~~d~~~~~~~Eav---~~ADiViLav 186 (417)
..||.||++.||+++++|+.+. |+.|.+++|..++.-+... + .|.... ...+++|.+ +.--.|||++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 9999999998665432221 1 232210 145777764 6778999999
Q ss_pred cchhHHH-HHHHHHhcCCCCcEEEEeccch----hhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceE
Q 014863 187 SDAAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 187 pd~a~~~-Vl~eI~p~Lk~GaiL~~a~G~~----i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~ 261 (417)
+....++ +++++.|+|.+|.+|++-+--. ....++ .-.+++=||..--.+ |.|.--.| |+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~G-PS 143 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYG-PS 143 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccC-Cc
Confidence 9877765 6688999999999988754321 111111 111233333322211 11000111 22
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhccccccc--ccchHHH--------HHHHHHHHHHH-cCCC
Q 014863 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI--LLGAVHG--------IVESLFRRFTE-NGMN 330 (417)
Q Consensus 262 liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtv--L~G~~~a--------~iea~~~~~v~-~Gl~ 330 (417)
+-|. -+.+++..++.++..+-.. +- --|+..+-.|+.+. ..=++|. +|--.|+.+.. .|++
T Consensus 144 -lMpG--g~~~Awp~ik~ifq~iaak-v~----~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls 215 (487)
T KOG2653|consen 144 -LMPG--GSKEAWPHIKDIFQKIAAK-VS----DGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLS 215 (487)
T ss_pred -cCCC--CChHHHHHHHHHHHHHHHH-hc----CCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCc
Confidence 2233 3678888888888888321 10 02445555555421 0111111 45557888877 7888
Q ss_pred HHHH
Q 014863 331 EDLA 334 (417)
Q Consensus 331 ~e~A 334 (417)
-++-
T Consensus 216 ~~ei 219 (487)
T KOG2653|consen 216 NDEI 219 (487)
T ss_pred HHHH
Confidence 7654
No 196
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.12 E-value=0.0021 Score=65.49 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceec-CCCcCCHH-hhhccCCeEEEee
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-d~~~~~~~-Eav~~ADiViLav 186 (417)
|+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999996 99999999999765 14555443433222111222111 1100 00122222 2457899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+..+.++..++.. .|..|+|.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999888877643 5888887765
No 197
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.10 E-value=0.0031 Score=54.63 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=57.5
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG----~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
|+|+||| -+..|.-+.++|++. |++|+..+.+... -.|... +.+++|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 788899999999998 9887654433211 145553 6678874478999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+....++++++... ..+.++...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987654 344455555543
No 198
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.09 E-value=0.0024 Score=61.47 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=62.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---eEEEEecCC----chh-------HHHHHHcCceecCCCcCC
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~d~~~~~ 171 (417)
..+++ +||.|+|.|.+|.+++..|.+. |. ++++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 35788 9999999999999999999988 86 487888872 221 23444432211 0136
Q ss_pred HHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
..++++++|+||-++|+.... +++...|.++.+|.+
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ 126 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFA 126 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEE
Confidence 778889999999999865543 233444556666553
No 199
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.08 E-value=0.012 Score=57.27 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=62.1
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC--C--------CcCCHHhhhccCCeEEEeecchh
Q 014863 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d--~--------~~~~~~Eav~~ADiViLavpd~a 190 (417)
.||..+|..|.++ |++|.+..|. +..+...+.|+...+ + ...++++ ....|+||++||-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999998 9998887774 334445556754311 1 0112333 668999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-Eeccch
Q 014863 191 QADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~-~a~G~~ 215 (417)
..++++.+.|++.++++|+ +.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 9999999999998887655 556775
No 200
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.08 E-value=0.0049 Score=62.40 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCch----hHHHHHH---cC--ceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR----SFAEARA---AG--FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~----s~~~A~~---~G--~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|+||.++|..+... |+ ++++.+..... .++.... .+ .... ...+. +++++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999998887 76 76555544332 1211111 11 1110 12455 57899999
Q ss_pred EEEee
Q 014863 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99966
No 201
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.05 E-value=0.0016 Score=65.23 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=59.4
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| ++|.|||.|. +|..+|..|... |..|++..++. .+..+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 155 DLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEEC
Confidence 6899 9999999988 999999999988 88888776531 2467889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++-.. ++.. .++++|++|++++
T Consensus 209 vg~p~---~i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 209 VGKPG---LVTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCc---ccCH--HHcCCCcEEEEcC
Confidence 98643 2322 2478999888765
No 202
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0019 Score=67.14 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=58.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcC---c--eecCCC-cCCHHhhhccCCeEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEENGT-LGDIYETISGSDLVL 183 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~d~~-~~~~~Eav~~ADiVi 183 (417)
|++|.|||+|.+|.++|..|.++ | .+|.+.+|+.++ .+++.+.+ + ...|.. .....+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 68999999999999999999988 7 689999887544 33443332 1 110110 123557899999999
Q ss_pred EeecchhHHHHHH
Q 014863 184 LLISDAAQADNYE 196 (417)
Q Consensus 184 Lavpd~a~~~Vl~ 196 (417)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
No 203
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.05 E-value=0.0013 Score=65.70 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=59.1
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| ++|.|||-|.. |..++.-|... |..|.+.... ..+..+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEEc
Confidence 5789 99999999988 99999999988 8888764321 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++-.. ++.. .++|+|++|++++
T Consensus 209 vG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 209 VGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCCcC---ccCH--HHcCCCCEEEEcc
Confidence 99432 3432 5689999888764
No 204
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.99 E-value=0.0036 Score=62.80 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc--Cceec---CCCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~~---d~~~~~~~Eav~~ADiViL 184 (417)
|||+|||.|.+|.++|..|... |+ ++++.++...+....+.+. ..... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 84 6666665433222222221 11000 0001344 56899999999
Q ss_pred eecc
Q 014863 185 LISD 188 (417)
Q Consensus 185 avpd 188 (417)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9985
No 205
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.96 E-value=0.0038 Score=55.78 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH-------cCceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||. |+.|.++|..|... ++ ++.+.++...+....+.+ .+... .......+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 69999999 99999999999988 65 666666653333333332 11110 001245678899999
Q ss_pred EEEeec
Q 014863 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
|+++.-
T Consensus 73 vvitag 78 (141)
T PF00056_consen 73 VVITAG 78 (141)
T ss_dssp EEETTS
T ss_pred EEEecc
Confidence 999873
No 206
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.96 E-value=0.002 Score=65.25 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=60.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc----CceecCCCcCCHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
++|+|||.|.||.+++..+.... ++ +|.+++|..++..+.+.+. |+.. ..+.+.++++.++|+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 43 6777887755555554432 4431 11467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|... .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8642 33322 23678876654
No 207
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.96 E-value=0.0018 Score=68.90 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.+++ ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+.... ...+.. .+.++|+||+|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4577 8999999999999999999998 98888887765444444444332210 011222 257899999999
Q ss_pred cchh
Q 014863 187 SDAA 190 (417)
Q Consensus 187 pd~a 190 (417)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
No 208
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.95 E-value=0.0049 Score=61.11 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=59.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiViLavpd~a 190 (417)
+||||||||.||..++..|.+.. ..++++...+++.....+... ..... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~-~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALA-GRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhh-ccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999986530 002454444554332222221 22332 6788885 688999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 014863 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~Ga-iL~~a~G 213 (417)
..+..+.++. .|. +++.+-|
T Consensus 75 v~e~~~~iL~---~g~dlvv~SvG 95 (267)
T PRK13301 75 IAEHAEGCLT---AGLDMIICSAG 95 (267)
T ss_pred HHHHHHHHHh---cCCCEEEEChh
Confidence 8887776643 344 4555545
No 209
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.95 E-value=0.0098 Score=50.04 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=60.6
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeecch
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISDA 189 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavpd~ 189 (417)
|.|+|+|.+|..+++.|++. +.+|++..+ +....+.+.+.|+....+...+.+ .-+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~-d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDR-DPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEES-SHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEEC-CcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 67999999999999999998 877766554 455678888888654322233332 1368999999999987
Q ss_pred hHHHHH-HHHHhcCCCCcEEEEecc
Q 014863 190 AQADNY-EKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 190 a~~~Vl-~eI~p~Lk~GaiL~~a~G 213 (417)
...-.+ ..+........++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 665333 333333333445555544
No 210
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.95 E-value=0.0019 Score=53.83 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd~ 189 (417)
.+|+|+|.|+.|.+++..+.+. . |+.+....+.+.+.... .-.|+.. ..+++++.+. .|+.+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999766654 2 54433333333321111 1125553 3477777766 99999999999
Q ss_pred hHHHHHHHHHh-cCCCCcEEEEec
Q 014863 190 AQADNYEKIFS-CMKPNSILGLSH 212 (417)
Q Consensus 190 a~~~Vl~eI~p-~Lk~GaiL~~a~ 212 (417)
...++..++.. .+|. ++.++.
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~ 95 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTP 95 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCC
Confidence 98888877544 3322 555554
No 211
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.90 E-value=0.0028 Score=65.68 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=61.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHc-----Cc---eecCCCcCCHHhhhccCC
Q 014863 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGSD 180 (417)
Q Consensus 110 g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~---~~~d~~~~~~~Eav~~AD 180 (417)
+-++++|||+|.|+..+.+.+..-. ..+ +|.+++|..++..+.+.+. |+ .. +.+.+|++++||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~AD 225 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGSD 225 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCCC
Confidence 3478999999999999999987741 024 6788888755444333322 32 22 578999999999
Q ss_pred eEEEeecchhH----HHHHHHHHhcCCCCcEEEE
Q 014863 181 LVLLLISDAAQ----ADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 iViLavpd~a~----~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|+.+|+.... ..+++ ...++||+.|.-
T Consensus 226 IVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 226 IVTYCNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred EEEEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 99999974321 13332 235689987763
No 212
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0062 Score=58.58 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH-HcCceecCCCcCC---HHhh-hccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~---~~Ea-v~~ADiViLav 186 (417)
|+|.|||+|..|.++|+.|.+. |++|++.++..+...+.+. +.+.....+...+ ++++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9998877766544333222 2333221111112 3444 78999999999
Q ss_pred cchhHHHHHHHHH
Q 014863 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~a~~~Vl~eI~ 199 (417)
....+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988887776654
No 213
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.87 E-value=0.0046 Score=50.35 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..+++ ++++|+|.|.||..++..|.+. +. ++.+++| |+++-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 44778 9999999999999999999887 53 5555444 99999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++...... ++....++++.+|++.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998654432 2234556788877654
No 214
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.84 E-value=0.0057 Score=57.95 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=58.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +..... .. .++-+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~-~~-~~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK-EF-EPSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec-CC-ChhhcCCceEEEE
Confidence 36889 9999999999999999999999 8888776654333333333333 221111 11 1345789999999
Q ss_pred eecchhHHHHHHHHH
Q 014863 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~a~~~Vl~eI~ 199 (417)
+|.+...-..+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988876555443
No 215
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.80 E-value=0.006 Score=57.76 Aligned_cols=106 Identities=11% Similarity=0.194 Sum_probs=65.1
Q ss_pred CEEEEEcccchHHHHHHHH--HhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~L--r~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.++.|||+|++|+|++.-- .+. |++++...+.++...-.-. .++.+. ...++++.++ +.|+.+|+||
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~--~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVY--DLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence 6899999999999998532 234 7788777777554322221 223321 1345666676 7899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEec
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~ 236 (417)
-....++.+.+...=-+ .+|-|+..- +..|+++.|--+.
T Consensus 156 a~~AQ~vad~Lv~aGVk-GIlNFtPv~---------l~~pe~V~V~~iD 194 (211)
T COG2344 156 AEHAQEVADRLVKAGVK-GILNFTPVR---------LQVPEGVIVENID 194 (211)
T ss_pred HHHHHHHHHHHHHcCCc-eEEeccceE---------ecCCCCcEEEEee
Confidence 88777777765432111 255554431 2556665554443
No 216
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.79 E-value=0.0081 Score=62.29 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=53.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcC---CHHhh-hccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG---DIYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~---~~~Ea-v~~ADiViLav 186 (417)
|+|.|+|+|.+|.++++.|++. |+++++..++.. ..+.+.+ .|+....+... ..+++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~-~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEE-RLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHH-HHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 988876665433 3444443 45432111111 23444 78999999999
Q ss_pred cchhHHHHHHH
Q 014863 187 SDAAQADNYEK 197 (417)
Q Consensus 187 pd~a~~~Vl~e 197 (417)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98766554433
No 217
>PRK11579 putative oxidoreductase; Provisional
Probab=96.78 E-value=0.0064 Score=61.45 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=51.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc-CceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
.||||||+|.+|. .++..+... .+++++...+.+.+. .+.+. +... ..+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466766654 156665444443322 12223 2222 568999985 5799999999
Q ss_pred chhHHHHHHHHH
Q 014863 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~a~~~Vl~eI~ 199 (417)
+..+.++....+
T Consensus 74 ~~~H~~~~~~al 85 (346)
T PRK11579 74 NDTHFPLAKAAL 85 (346)
T ss_pred cHHHHHHHHHHH
Confidence 999988776543
No 218
>PRK10206 putative oxidoreductase; Provisional
Probab=96.76 E-value=0.0055 Score=62.29 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCEEEEEcccchHH-HHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeec
Q 014863 111 INQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 111 ~kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavp 187 (417)
|.||||||+|.++. .++..+.... .+.+++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 35899999999764 4455553320 04566544444433334555555321 1568999985 6799999999
Q ss_pred chhHHHHHHHHH
Q 014863 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~a~~~Vl~eI~ 199 (417)
+..+.++..+.+
T Consensus 74 ~~~H~~~~~~al 85 (344)
T PRK10206 74 ADSHFEYAKRAL 85 (344)
T ss_pred chHHHHHHHHHH
Confidence 999988776543
No 219
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.75 E-value=0.0056 Score=61.88 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=93.1
Q ss_pred hhhhccccCccccccccchhhHhhhhhcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcC
Q 014863 60 MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139 (417)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~ 139 (417)
|.+.-.++-|. .+-|-++-+.|--+|-|-.|-++-+ - ....---+.| |...|.|||..|..-|+.||..
T Consensus 168 m~k~G~L~VPA-iNVNDSVTKsKFDnLygcreSl~Dg-i--kraTDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------ 236 (434)
T KOG1370|consen 168 MSKNGKLKVPA-INVNDSVTKSKFDNLYGCRESLLDG-I--KRATDVMIAG-KVAVVCGYGDVGKGCAQALKGF------ 236 (434)
T ss_pred HHhCCceecce-eeccchhhhhhccccccchhhhhhh-h--hhhhhheecc-cEEEEeccCccchhHHHHHhhc------
Confidence 44444444333 5567777777777777666543320 0 0001124566 8888999999999999999988
Q ss_pred CceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 140 G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
|..|+|..-..-..++.| -.|+. +.+++|+++++|+++.+|--..+ +..+.+..||.+++|+-.+-|.
T Consensus 237 g~~VivTEiDPI~ALQAa-MeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 237 GARVIVTEIDPICALQAA-MEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CcEEEEeccCchHHHHHH-hhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 888887654433444444 45888 57899999999999998875433 3346778899999998666554
No 220
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.74 E-value=0.0039 Score=62.28 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||.|. .|.+++..|.+. |..|.+.+++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 36889 9999999997 999999999988 8888777652 1245566789999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+|+... .+. ...+++|++|+++.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996222 232 24578999988764
No 221
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.73 E-value=0.0071 Score=60.21 Aligned_cols=64 Identities=30% Similarity=0.284 Sum_probs=40.8
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH---Hc----C--ceecCCCcCCHHhhhccCCeEE
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----G--FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~---~~----G--~~~~d~~~~~~~Eav~~ADiVi 183 (417)
|+|||.|.||..+|..|... |+ +|++.+...+.....+. .. + ... ....+. +.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d~-~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTNDY-EDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCCH-HHhCCCCEEE
Confidence 68999999999999999877 65 77776655332111111 11 1 111 012344 5689999999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 977
No 222
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.69 E-value=0.0081 Score=61.40 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=58.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceec--CCCc--CCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--d~~~--~~~~Eav~~ADiViLa 185 (417)
+||+|||. |.+|..+++.|.+. .+++++ +..+..+.........+.... +..+ .+.++..+++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999998 99999999999764 134555 323221111111111221000 0001 2455666789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|...+.++..++.. .|..|++.++
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~ 100 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSA 100 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCCh
Confidence 999998888877643 5787887765
No 223
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.67 E-value=0.0038 Score=61.97 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=55.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiV 182 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+....-.... +..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 4678 9999999999999999999998 87 68888888666666665433210000011 223556889999
Q ss_pred EEeecchh
Q 014863 183 LLLISDAA 190 (417)
Q Consensus 183 iLavpd~a 190 (417)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
No 224
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.66 E-value=0.0056 Score=64.63 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=66.7
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
++|+|||. |+.|.-+.++|++. |+ +|+..+.+ .. .-.|... +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~-~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPK-AG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCC-CC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 45433322 21 2256664 56888887788999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~ 215 (417)
+|+....++++++.. ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998765 33455778888885
No 225
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.60 E-value=0.0077 Score=64.80 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=65.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--C----C-------CcCC-------
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-------TLGD------- 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d----~-------~~~~------- 171 (417)
.|+.|||+|.+|...++.++.. |.+|++.+++ ....+.++..|.... + + ...+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 7999999999999999999988 8887766555 445778887776530 0 0 0001
Q ss_pred ---HHhhhccCCeEEEee--cchhHHH-HHHHHHhcCCCCcEEEEec
Q 014863 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ---~~Eav~~ADiViLav--pd~a~~~-Vl~eI~p~Lk~GaiL~~a~ 212 (417)
..+.++++|+||.++ |-...+. +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578999999988 2111223 3356778899999998764
No 226
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.51 E-value=0.017 Score=58.32 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=45.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----c----CceecCCCcCCHHhhhcc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A----GFTEENGTLGDIYETISG 178 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~----G~~~~d~~~~~~~Eav~~ 178 (417)
.+ +||+|||.|.+|.++|..|... |+ ++.+.+.........+.+ . .... ...+ .+.+++
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i---~~~~-~~~~~~ 73 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI---YAGD-YSDCKD 73 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE---EeCC-HHHhCC
Confidence 35 7999999999999999999988 76 666666544332222222 1 1111 1223 356899
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
||+||++.-
T Consensus 74 adivIitag 82 (315)
T PRK00066 74 ADLVVITAG 82 (315)
T ss_pred CCEEEEecC
Confidence 999999754
No 227
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.48 E-value=0.0097 Score=59.62 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||.|. .|..++.-|... |..|.+..+. ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 35889 9999999998 999999999888 8888776542 1357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... +. ..++++|++|++++
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953322 21 15678999988765
No 228
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=96.40 E-value=0.019 Score=58.41 Aligned_cols=119 Identities=10% Similarity=0.131 Sum_probs=82.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEee
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLav 186 (417)
.||.|-| .|.+|.-+++.+++. |-+|+.|..+.. .... ..|+.. ..+++|+.+. +|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 5899999 599999999999999 999888887643 2221 126664 6789999887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhH
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v 244 (417)
|+....+.+.+.... .-..+|+++.||...............-.+..+=||+||-..
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~ 153 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIK 153 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEc
Confidence 999999888775442 123477899999744211100011122345567788888553
No 229
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.39 E-value=0.0072 Score=69.86 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhc---------CCceEEEEecCCchhHHHHHHc-Cc--eecCCCcCCHHh--
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~d~~~~~~~E-- 174 (417)
+.+++|+|||+|.||..++..|.+. .+.. .+..|.|+++...+..+.+... ++ ...| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 3458999999999999999999765 0000 0113666665433333333333 42 1101 345444
Q ss_pred -hhccCCeEEEeecchhHHHHHHHH
Q 014863 175 -TISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 175 -av~~ADiViLavpd~a~~~Vl~eI 198 (417)
+++++|+|+.|+|+..+..+....
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHHH
Confidence 446899999999999888877643
No 230
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.36 E-value=0.0073 Score=61.89 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..++| ++|.|+|. |.||..+++.|... .|. ++++..|...+..+.+.+.+.. ...+.++++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999998 89999999999743 043 6777777644444445443311 1346788999999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.++...... ++.. ..++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 988743221 1111 2346777777654
No 231
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.36 E-value=0.033 Score=50.02 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.6
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhhccCCeEEEeecc
Q 014863 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLavpd 188 (417)
|.|+|. |.+|..+++.|.+. |++|++..|+.++..+ ..++......+.+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 789995 99999999999999 9999888887554333 4454432222334 35678899999999984
No 232
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.33 E-value=0.007 Score=63.47 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=48.5
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCceEEEEecCCchhHHHHH--------HcCceecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.+.+. .+.... +-.|.+|++.++..+. .+... ..+....-....|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~-l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEER-LETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 48999999999998766 453210 0115677776654322 22211 11111000014577899999999
Q ss_pred EEEeecchhHHHHH
Q 014863 182 VLLLISDAAQADNY 195 (417)
Q Consensus 182 ViLavpd~a~~~Vl 195 (417)
||.+++........
T Consensus 78 Vi~ai~~~~~~~~~ 91 (423)
T cd05297 78 VINTIQVGGHEYTE 91 (423)
T ss_pred EEEeeEecCccchh
Confidence 99999976655433
No 233
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.33 E-value=0.013 Score=53.49 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=58.3
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccC
Q 014863 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (417)
Q Consensus 101 f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~A 179 (417)
||.. -.|+| ++|.|||.|.+|...++.|.+. |.+|.+....-.+ +. .+.+ +....+ ... ++-+.++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~~~--~l-~~l~~i~~~~~-~~~-~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEICK--EM-KELPYITWKQK-TFS-NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCccCH--HH-HhccCcEEEec-ccC-hhcCCCc
Confidence 5544 57899 9999999999999999999999 9888776432111 21 2222 222111 112 2236899
Q ss_pred CeEEEeecchhHHHHHHHHHh
Q 014863 180 DLVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p 200 (417)
|+|+.+|.+...-..+.....
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999887766655443
No 234
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.30 E-value=0.11 Score=50.96 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=124.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------hhHHHHHHcCceec----------CCCcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------d~~~~~ 171 (417)
.||+|+|.|..|+++|.-...+ |++|..++-..+ +...+.++.|.... -+.+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 6899999999999999999888 999887765422 11222233332210 022568
Q ss_pred HHhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEEEecc-chhhhhhccccCCCCCCcEEEeccCCchhhHHHHH
Q 014863 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Eav~~ADiViLavpd~a~~--~Vl~eI~p~Lk~GaiL~~a~G-~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly 248 (417)
+.|++++|=.|-=|+|..-.- .+|.++-..+.|..+|.-+.. |-...+-. + +-+.-.++-+||--|-.-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-g--L~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-G--LINKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-h--hhhhhheeEecCCCCCccc----
Confidence 999999998888899966553 477666666666666653332 22221111 1 1123478889995543331
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh-hcccccccccchHHHHHHH------HH
Q 014863 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVES------LF 321 (417)
Q Consensus 249 ~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~-dlfgeqtvL~G~~~a~iea------~~ 321 (417)
-.. =+.|+.-.+++..++..++...+|-..+ +...|..- .+=-.|-++|.-.-.++.+ -.
T Consensus 151 ---------PLv-ElVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 ---------PLV-ELVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred ---------chh-eeccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 011 1446777788999999999999995311 11122000 0001111122111112222 35
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 014863 322 RRFTENGMNEDLAYKNTVECIT 343 (417)
Q Consensus 322 ~~~v~~Gl~~e~A~~~~~~~l~ 343 (417)
|.-..+|+-|-+|+.-.+||++
T Consensus 218 D~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred HHHHhcCCCcchhcccchhhhh
Confidence 7777899999999999999988
No 235
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.30 E-value=0.014 Score=62.81 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=67.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CCC-------------cCCH
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI 172 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~-------------~~~~ 172 (417)
..+ .||.|||.|.+|...++.++.. |.+|++.++ +....+.+++.|.... +.. ..+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~-~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDT-RPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 346 8999999999999999999888 887665554 4566889999997520 100 0010
Q ss_pred --------HhhhccCCeEEEeecchh--HHHH-HHHHHhcCCCCcEEEEec
Q 014863 173 --------YETISGSDLVLLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 --------~Eav~~ADiViLavpd~a--~~~V-l~eI~p~Lk~GaiL~~a~ 212 (417)
.+.++++|+||-++.... .+.+ .++....||+|.+|++.+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122357999999986322 3345 377888899999887663
No 236
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.25 E-value=0.016 Score=52.27 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999955 7899999999888 8888776532 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.-.. +++ ...+|+|++|++.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 998652 232 2457999987744
No 237
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.24 E-value=0.0062 Score=57.76 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd~ 189 (417)
++|+|||+|.+|.+++..+... . .|++++...+.+....... -.|+.. ....+..+.+++ .|.|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 1777665555433211111 123321 013356677654 99999999999
Q ss_pred hHHHHHHHHH
Q 014863 190 AQADNYEKIF 199 (417)
Q Consensus 190 a~~~Vl~eI~ 199 (417)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
No 238
>PRK04148 hypothetical protein; Provisional
Probab=96.23 E-value=0.049 Score=48.90 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~~ADiViLavp 187 (417)
++ ++|.+||+| -|.++|..|.+. |++|+. .+.++...+.+++.+.... ++-+....+.-+++|+|--.=|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Via-IDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVIV-IDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEEE-EECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 889999999 899999999988 998754 5555666777887776432 2223344577899999999888
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8777665557777665444444
No 239
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.21 E-value=0.023 Score=47.96 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.++| ++|.|||.|..|..=++.|.+. |.+|.+..... ...+..+... -...++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4788 9999999999999999999999 98887766542 1111223221 123456688999999999
Q ss_pred cchhHHHHHHH
Q 014863 187 SDAAQADNYEK 197 (417)
Q Consensus 187 pd~a~~~Vl~e 197 (417)
.+....+-+.+
T Consensus 69 ~d~~~n~~i~~ 79 (103)
T PF13241_consen 69 DDPELNEAIYA 79 (103)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 98777644433
No 240
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.01 Score=60.17 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec--CCCcCCHHhhhccCCeEEEee--c
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLLI--S 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~~~~~Eav~~ADiViLav--p 187 (417)
-||.|||.|-.|..-|+-...- |-+|.+.+.+..+....-...+.... -.+...++|+++++|+||-++ |
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999988766544 77898887764433322222333210 112235788999999999665 5
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEec
Q 014863 188 DAAQAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~a~~~-Vl~eI~p~Lk~GaiL~~a~ 212 (417)
-...+. +.+++...||||++|+|++
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 555555 4467889999999998764
No 241
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.18 E-value=0.025 Score=56.75 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=67.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd 188 (417)
.||.|.|. |++|..+.++|++. |+.+++...+..-. .+-.|+.. +.+++|+-+. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999995 88999999999988 77644344332000 11246664 6688887776 8999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~ 217 (417)
....+++++... ..-..++++++||...
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999988655 2334578899999754
No 242
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.14 E-value=0.022 Score=57.12 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=68.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd 188 (417)
.+|.|.| .|.+|..+-.+|+.. |.+++++..+. +. ..+-.|+.. +.+++|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 799999999999998 88766665543 10 112257764 6688887765 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i 216 (417)
....+++++.... .-..+|++++||..
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999886542 23457889999964
No 243
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.011 Score=59.22 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=64.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCcee---cCCCcCCHHhhhccCCe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~---~d~~~~~~~Eav~~ADi 181 (417)
...+| ++|.|+|.|=.+.+++..|.+. |. +|.|.+|+.++..+.+...+-.. ......+. +...++|+
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~-~~~~~~dl 193 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADL-EGLEEADL 193 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhccccccccccccc-ccccccCE
Confidence 34567 9999999999999999999999 96 79999998777666665544110 00001112 22226999
Q ss_pred EEEeecchhHHHH----HHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADN----YEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~V----l~eI~p~Lk~GaiL~~a 211 (417)
||.+||....... +. ...++++.++.|+
T Consensus 194 iINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 9999997765531 22 3446667776643
No 244
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.12 E-value=0.03 Score=54.59 Aligned_cols=65 Identities=28% Similarity=0.323 Sum_probs=42.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHH------c--CceecCCCcCCHHhhhccCC
Q 014863 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~d~~~~~~~Eav~~AD 180 (417)
|+|||. |.+|..++..|... | .++.+.+....+....+.+ . ..... ..+|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999888 6 4676666543322111111 1 11210 1345578999999
Q ss_pred eEEEee
Q 014863 181 LVLLLI 186 (417)
Q Consensus 181 iViLav 186 (417)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
No 245
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.09 E-value=0.026 Score=51.98 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.+
T Consensus 33 ~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVsa 86 (160)
T PF02882_consen 33 DLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVSA 86 (160)
T ss_dssp STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE-
T ss_pred CCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEeee
Confidence 5889 999999988 6999999999998 8887765432 12567788999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... ++ ...+|+|++|++++
T Consensus 87 ~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 87 VGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp SSSTT----B---GGGS-TTEEEEE--
T ss_pred eccccc---cc--cccccCCcEEEecC
Confidence 985332 22 24579999888775
No 246
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.07 E-value=0.044 Score=51.57 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHHcCceecCCCcC---CHHhhhccCCeEEEeecc
Q 014863 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiViLavpd 188 (417)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+...+.|......... ++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999998 9999888887533 334556677753222222 345689999999999993
No 247
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.06 E-value=0.043 Score=51.96 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=60.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC---Cc---------------hhHHHHH---H-cC
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEAR---A-AG 161 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~---~~---------------~s~~~A~---~-~G 161 (417)
.+.|+. ++|+|||+|.+|..+|.+|... |+ ++++.++. .+ +....++ + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999998 87 46555443 00 0000000 0 00
Q ss_pred -ceec--CCCc--CCHHhhhccCCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEeccc
Q 014863 162 -FTEE--NGTL--GDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 162 -~~~~--d~~~--~~~~Eav~~ADiViLavpd~a~~-~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.... +..+ .+..+.++++|+||-|+-+.... .+++++...++.. .|+...|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~-~ii~~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDK-YLIAASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCC-cEEEEecc
Confidence 1100 0001 12345688999999995443444 3456777776554 34435554
No 248
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.05 E-value=0.041 Score=55.97 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=45.5
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--chhHHHHHHc-CceecCCCc-CCHHhhhc
Q 014863 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA-GFTEENGTL-GDIYETIS 177 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~--~~s~~~A~~~-G~~~~d~~~-~~~~Eav~ 177 (417)
|..++. +||+|||. |.+|.++|..|... +. ++++.+... ...++..... .+...+.+. .+..++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR 75 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC
Confidence 345666 99999999 99999999999866 43 566655521 1111211101 112101000 12267899
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
++|+|+++.-
T Consensus 76 gaDvVVitaG 85 (321)
T PTZ00325 76 GADLVLICAG 85 (321)
T ss_pred CCCEEEECCC
Confidence 9999998764
No 249
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.01 E-value=0.017 Score=54.94 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc--CC----HHhhhcc
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~--~~----~~Eav~~ 178 (417)
..++| |+|.|||-+ ..|..+|.-|.+. |..|.+.+.+............ +... .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~----hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIR----HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccc----cccccccchhhHHHHHhhh
Confidence 36899 999999966 7899999999888 8888877543211111000000 0001 12 6788999
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
||+||.+++..... +. ...+|+|++|++++-
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999965431 21 234689999998763
No 250
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.95 E-value=0.041 Score=60.26 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=58.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
.+|.|+|+|.+|..+++.|++. |+++++-+ .+.+..+.+++.|....-+...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID-~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLE-RDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEE-CCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 98876655 5566678888888654212222322 13679999999999
Q ss_pred chhHHH-HHHHHHh
Q 014863 188 DAAQAD-NYEKIFS 200 (417)
Q Consensus 188 d~a~~~-Vl~eI~p 200 (417)
+..... +...+..
T Consensus 474 d~~~n~~i~~~~r~ 487 (601)
T PRK03659 474 EPEDTMKIVELCQQ 487 (601)
T ss_pred CHHHHHHHHHHHHH
Confidence 977653 3333333
No 251
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.95 E-value=0.04 Score=59.48 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=54.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
..|-|+|+|.+|..+++.|++. |+++++.+. +++..+.+++.|.....+...+.+ .-++++|.|+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~-d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIET-SRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3699999999999999999999 998876654 455577777888654322222322 12579999999999
Q ss_pred chhHH
Q 014863 188 DAAQA 192 (417)
Q Consensus 188 d~a~~ 192 (417)
++...
T Consensus 491 ~~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred ChHHH
Confidence 87654
No 252
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.93 E-value=0.025 Score=57.91 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=50.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-eEEEEecCCchhHHHHHH---cCceecCCCcCC---HHhhhccCCeEEEe
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA---AGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G-~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~---~~Eav~~ADiViLa 185 (417)
|.|||.|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ ..+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999988 5 4 788888875543344332 122211001223 45688999999999
Q ss_pred ecchhHHHHHHH
Q 014863 186 ISDAAQADNYEK 197 (417)
Q Consensus 186 vpd~a~~~Vl~e 197 (417)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666654
No 253
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.93 E-value=0.019 Score=57.49 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| ++|.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 36789 999999999 9999999999888 8888776321 1245678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++..... +. ..++++|++|++++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9975433 22 23468999988765
No 254
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.87 E-value=0.069 Score=55.39 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=58.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--CceecCCCcCCHH----hhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~----Eav~~ADiViLa 185 (417)
++|.|||+|.+|..+++.|.+. |+++++.++. .+..+...+. ++....+...+.+ ..++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8899999999999999999998 9888776654 3334444432 3321111122222 246799999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++...--+...+...+.+..+++-+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 98764433333344445455555533
No 255
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.82 E-value=0.037 Score=56.62 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=50.0
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-HHHHHHcCceec-----------CC---CcCCHHhhhcc
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~-----------d~---~~~~~~Eav~~ 178 (417)
|||+|+|.||..+++++... .+++++...+.+.+. ...|...|+... +. ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 156766555543321 133433332110 00 03468889999
Q ss_pred CCeEEEeecchhHHHHH
Q 014863 179 SDLVLLLISDAAQADNY 195 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl 195 (417)
+|+|+.|+|...+..-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987765433
No 256
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.80 E-value=0.038 Score=52.15 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=54.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHHHHHHc----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (417)
.+.|+. +||.|||+|.+|..++++|... |+ ++.+.++.. .+....+...
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 367788 9999999999999999999998 87 555554331 1111111110
Q ss_pred -Cceec--CCCcC--CHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~~--d~~~~--~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
.+..+ +..+. +..+.++++|+||.++-.......+.+..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11100 01111 23457889999999986655555665543
No 257
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.76 E-value=0.033 Score=56.32 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=42.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHH----HcCceecCC-C-cCCHHhhhccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEENG-T-LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~----~~G~~~~d~-~-~~~~~Eav~~ADiVi 183 (417)
+||+|||.|.+|.++|..|... |. ++++.+.+.......+. ...+..... . ..++++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999887 65 56666654332222222 121110000 1 245654 89999999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
No 258
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.76 E-value=0.029 Score=56.05 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| +++.|||.+ ..|..+|.-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 36899 999999999 9999999999887 8777776542 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-. .++. ..++|+|++|+|++
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2332 12269999998775
No 259
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.76 E-value=0.028 Score=58.47 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
++|.|||+|.+|.++|+.|++. |.+|++.++... ..... +... +......+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLE-ALQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCcc-ccchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999999 988766664422 22111 1110 000123334457899999887644
No 260
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.041 Score=55.27 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=57.8
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| +++.|||.+. .|..++.-|... |..|.+.... ..++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 35789 9999999998 999999999888 8888776521 2356788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++--.. .+. ...+++|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 776322 222 23578999988765
No 261
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.73 E-value=0.021 Score=56.99 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCc---hhHHHHHHcCceec-CCCcCCH------Hhh
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEE-NGTLGDI------YET 175 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~~-d~~~~~~------~Ea 175 (417)
.++| +++.|||.|-.+.|++..|... |. ++.+.+|..+ +..+.+...+.... .-.+.+. .+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 3677 8999999999999999999887 86 7888888742 44444443321000 0001122 235
Q ss_pred hccCCeEEEeecchhH
Q 014863 176 ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 176 v~~ADiViLavpd~a~ 191 (417)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997654
No 262
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.72 E-value=0.03 Score=53.80 Aligned_cols=79 Identities=16% Similarity=0.026 Sum_probs=49.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------hhHHHHHHcCceec-CC-CcCCHH
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE-NG-TLGDIY 173 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~-d~-~~~~~~ 173 (417)
..++| ++|+|.|+|+.|..+|+.|.+. |..++...+.+. +..+...+.+-... .. ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46789 9999999999999999999998 886655555544 44444444332210 00 001112
Q ss_pred hh-hccCCeEEEeecchhH
Q 014863 174 ET-ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 174 Ea-v~~ADiViLavpd~a~ 191 (417)
+. -.+||+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 1378888888776533
No 263
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.65 E-value=0.035 Score=50.71 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCC-----------------
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----------------- 167 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~----------------- 167 (417)
+..+.. .+|.|+|.|+.|..-+.-+..- |.++++.+.. ....+.....+.....-
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 345555 8999999999999999988887 9988776654 33344444444432100
Q ss_pred -----CcCCHHhhhccCCeEEEe--ecchhHHHHH-HHHHhcCCCCcEEEEec
Q 014863 168 -----TLGDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 168 -----~~~~~~Eav~~ADiViLa--vpd~a~~~Vl-~eI~p~Lk~GaiL~~a~ 212 (417)
......+.++.+|+||.. .|....+.++ ++....|++|.+|+|.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 001245678999999963 3555666666 46777899999999774
No 264
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.59 E-value=0.094 Score=49.86 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| ++|.|||.|..|..-++.|.+. |.+|+|......+.+....+.| +....+.. . .+-+.++|+||.+
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEEC
Confidence 5889 9999999999999999999999 9888776654333333333333 33211111 2 3447899999999
Q ss_pred ecchhHH-HHHHHH
Q 014863 186 ISDAAQA-DNYEKI 198 (417)
Q Consensus 186 vpd~a~~-~Vl~eI 198 (417)
+.+.... .++...
T Consensus 77 t~d~~ln~~i~~~a 90 (205)
T TIGR01470 77 TDDEELNRRVAHAA 90 (205)
T ss_pred CCCHHHHHHHHHHH
Confidence 9987553 454443
No 265
>PRK05442 malate dehydrogenase; Provisional
Probab=95.53 E-value=0.1 Score=53.10 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=42.6
Q ss_pred CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc------hhHHHHHHc-----CceecCCCcC
Q 014863 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTLG 170 (417)
Q Consensus 110 g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~------~s~~~A~~~-----G~~~~d~~~~ 170 (417)
...||+|||. |.+|.++|..|... ++ ++++.+.... ..++..... .... ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~ 72 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TD 72 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ec
Confidence 3479999998 99999999988765 33 4555554221 112222111 1111 23
Q ss_pred CHHhhhccCCeEEEeec
Q 014863 171 DIYETISGSDLVLLLIS 187 (417)
Q Consensus 171 ~~~Eav~~ADiViLavp 187 (417)
+..+.+++||+||++--
T Consensus 73 ~~y~~~~daDiVVitaG 89 (326)
T PRK05442 73 DPNVAFKDADVALLVGA 89 (326)
T ss_pred ChHHHhCCCCEEEEeCC
Confidence 45578899999998764
No 266
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.46 E-value=0.037 Score=55.07 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCC---chhHHHHHHc---C--ceecCCCcC---CHHh
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~d~~~~---~~~E 174 (417)
.++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+.+. + ......... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3567 8999999999999999999988 885 88888864 3333333321 1 110000011 2234
Q ss_pred hhccCCeEEEeecchhH
Q 014863 175 TISGSDLVLLLISDAAQ 191 (417)
Q Consensus 175 av~~ADiViLavpd~a~ 191 (417)
.++++|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56778999999997643
No 267
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.46 E-value=0.045 Score=55.61 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCch------hHHHHHHc-----CceecCCCcCCH
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~~------s~~~A~~~-----G~~~~d~~~~~~ 172 (417)
+||+|||. |.+|.++|..|... |+ ++.+.+..... .++..... .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999999876 54 45555543221 11111111 1111 1344
Q ss_pred HhhhccCCeEEEeec
Q 014863 173 YETISGSDLVLLLIS 187 (417)
Q Consensus 173 ~Eav~~ADiViLavp 187 (417)
.+.+++||+||++--
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 578899999999764
No 268
>PLN02602 lactate dehydrogenase
Probab=95.46 E-value=0.11 Score=53.41 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=41.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----cCc----eecCCCcCCHHhhhccCCe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGF----TEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~----~~~d~~~~~~~Eav~~ADi 181 (417)
+||+|||.|++|.++|..|... ++ ++++.+.........+.+ ..+ ... ...+.+ .+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy~-~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDYA-VTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCHH-HhCCCCE
Confidence 5999999999999999999877 65 565555443322222221 111 110 012444 4899999
Q ss_pred EEEee
Q 014863 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 109 VVitA 113 (350)
T PLN02602 109 CIVTA 113 (350)
T ss_pred EEECC
Confidence 99984
No 269
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.046 Score=54.73 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..+|.-|.+. |..|.+.... ..+..+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEEe
Confidence 6889 999999988 8999999999888 8777765321 12566789999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++++|++|++++
T Consensus 208 vGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 208 VGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred cCcccc---cC--HHHcCCCcEEEEee
Confidence 975432 22 24578999988764
No 270
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.41 E-value=0.074 Score=53.55 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=42.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--chhHHHHH-------HcCc--eecCCCcCCHHhhhc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~--~~~d~~~~~~~Eav~ 177 (417)
+||+|||. |..|..++..|... |+ +|++.++.. .+....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999888 76 466666632 11111110 1111 11 0 0124 45699
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999985
No 271
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.41 E-value=0.38 Score=48.92 Aligned_cols=157 Identities=12% Similarity=0.040 Sum_probs=93.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
.||+||| .|-.|.-+.+-|.+. ..+++.. ...... +. ..+.+++++++|+||+|+|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~-l~s~~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLS-IAPDRR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEEE-Eecccc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4899999 789999999888765 1234322 222111 22 1345667789999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCCC
Q 014863 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~s 270 (417)
..++.+.+. ..|..|+|.++- + .+ +-+++-+.|.-... .|+..+. .. +|+ ...+.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad----f-----Rl--~~~~~yglPEln~~-~~~~i~~--------a~-lIA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA----Y-----RT--ADDWAYGFPELAPG-QREKIRN--------SK-RIA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH----H-----hC--CCCCeEEccccCHH-HHHhhcc--------CC-EEE-CCCCH
Confidence 888777653 367788887763 1 11 11677778855432 2222222 22 344 55566
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHH
Q 014863 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 271 gea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~ 321 (417)
..+..+++.=+...|.. +......+.+.+..+|++-..++.+.
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhh
Confidence 66666665555555532 11112345566677778777666544
No 272
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.37 E-value=0.09 Score=57.88 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
++|-|+|+|.+|..+++.|++. |+++++- +.+.+..+.+++.|.....+...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6799999999999999999998 9887665 45566677778888754322222332 23569999999999
Q ss_pred chhHHH
Q 014863 188 DAAQAD 193 (417)
Q Consensus 188 d~a~~~ 193 (417)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 876653
No 273
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.31 E-value=0.052 Score=57.08 Aligned_cols=71 Identities=21% Similarity=0.125 Sum_probs=50.3
Q ss_pred cccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
+..++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45667 89999999999999 89999999 99987766543333333455677641 1223455678999887
Q ss_pred ee
Q 014863 185 LI 186 (417)
Q Consensus 185 av 186 (417)
.-
T Consensus 73 sp 74 (461)
T PRK00421 73 SS 74 (461)
T ss_pred CC
Confidence 53
No 274
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.30 E-value=0.075 Score=54.54 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=60.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEE-ecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeec---
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavp--- 187 (417)
.||||||+ .+|..++..+++. ..+.+++.. ++..+++.+.|.+.|+.. ..+.+|++.+.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 58999999 5799999999876 003455433 444456667888888763 6799999988888888875
Q ss_pred -chhHHHHHHHHHhcCCCCcEEE
Q 014863 188 -DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 -d~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45676766553 45666554
No 275
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.21 E-value=0.06 Score=54.10 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=57.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++++.+++||+||.+
T Consensus 152 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIsA 205 (287)
T PRK14173 152 PLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVVA 205 (287)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5889 999999955 7899999999887 7777765432 23567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 206 vGkp~~---i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 206 VGRPHL---IT--PEMVRPGAVVVDVG 227 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985432 22 34578999988764
No 276
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.17 E-value=0.12 Score=52.82 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=57.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------chhH---HHHHH
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (417)
.+.|++ ++|.|||+|..|..+|.+|... |+ ++.+.++.. .+.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 578888 9999999999999999999998 87 555555431 0111 11111
Q ss_pred --cCceec----CCCcCCHHhhhccCCeEEEeecchhHHHHHHHHHh
Q 014863 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 160 --~G~~~~----d~~~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p 200 (417)
.++..+ +-+..+.++.++++|+||.++-+....-++.++.-
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~ 138 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ 138 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 122110 10112356788999999999976665556666543
No 277
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.064 Score=54.10 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=57.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 155 DIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVAA 208 (297)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999965 7899999999888 8887766322 13567888999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++|+|++|++++
T Consensus 209 vGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 209 AGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEec
Confidence 98543 232 24578999988765
No 278
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.11 E-value=0.048 Score=52.74 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=29.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi 144 (417)
..++| ++|+|.|+|++|..+++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 56788 9999999999999999999998 98876
No 279
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.10 E-value=0.17 Score=51.48 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=42.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc--hhHHHHHH----c-----CceecCCCcCCH
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEARA----A-----GFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~--~s~~~A~~----~-----G~~~~d~~~~~~ 172 (417)
.||+|||. |.+|.++|..|... ++ ++++.+.... .....+.+ . ++.. ..+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 73 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA----TTDP 73 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE----ecCh
Confidence 58999998 99999999999877 54 5655554321 12222221 1 1111 1345
Q ss_pred HhhhccCCeEEEeec
Q 014863 173 YETISGSDLVLLLIS 187 (417)
Q Consensus 173 ~Eav~~ADiViLavp 187 (417)
.+.+++||+||++--
T Consensus 74 ~~~~~daDvVVitAG 88 (323)
T TIGR01759 74 EEAFKDVDAALLVGA 88 (323)
T ss_pred HHHhCCCCEEEEeCC
Confidence 678899999998763
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.07 E-value=0.14 Score=52.67 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=57.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhh-ccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-SGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav-~~ADiViLa 185 (417)
-.| ++|+|+|.|-.|..-.|-++.. |.+|+...++ .+..+.|++.|.... +....+..+.+ +.+|+|+..
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999997777766666666 8888776665 445788888886431 11111122333 239999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+++.. ++.-.+.|+++-+++.+
T Consensus 237 v~~~~----~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VGPAT----LEPSLKALRRGGTLVLV 258 (339)
T ss_pred CChhh----HHHHHHHHhcCCEEEEE
Confidence 99332 22333445666555533
No 281
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.06 E-value=0.088 Score=52.84 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=57.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... ..+..+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 154 QIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999966 7899999999888 8777765321 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 208 vG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 208 TGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985432 22 24578999988764
No 282
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.04 E-value=0.072 Score=54.33 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hh-hhcCCceEEEE-ecC---------Cchh-HHHHHHcCceec-C--CCcCCHH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVG-LRK---------GSRS-FAEARAAGFTEE-N--GTLGDIY 173 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s---~~-~~~~G~~Vivg-~r~---------~~~s-~~~A~~~G~~~~-d--~~~~~~~ 173 (417)
.+|+|||+|+||..+++.|++. +. ..|.+++|+.. +++ +... .+.+.+.|.... + ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998764 10 11223454332 321 1111 122222332110 0 0023677
Q ss_pred hhh--ccCCeEEEeecchhHH-HH-HHHHHhcCCCCcEEEE
Q 014863 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (417)
Q Consensus 174 Eav--~~ADiViLavpd~a~~-~V-l~eI~p~Lk~GaiL~~ 210 (417)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986652 22 2233455667776653
No 283
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.03 E-value=0.087 Score=52.71 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=42.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHc--Ccee-cCC--C-cCCHHhhhccCCeEEEe
Q 014863 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENG--T-LGDIYETISGSDLVLLL 185 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~d~--~-~~~~~Eav~~ADiViLa 185 (417)
|+|||.|.+|.++|..|... |+ ++++.+...++....+.+. .... ... . ..+ .+.+++||+||++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 68999999999999999888 74 5666665443322222210 0000 000 0 123 4688999999998
Q ss_pred ec
Q 014863 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
..
T Consensus 74 ag 75 (300)
T cd00300 74 AG 75 (300)
T ss_pred CC
Confidence 86
No 284
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.091 Score=52.66 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+...+ ..++++.+++||+||.+
T Consensus 153 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 153 DVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999965 7899999999888 8877765432 13567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 207 vG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 207 VGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred cCCcCc---cC--HHHcCCCcEEEEee
Confidence 985433 22 23578999988765
No 285
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.076 Score=53.26 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+...+ ..++++.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIsA 209 (284)
T PRK14177 156 DVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVGA 209 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 6889 999999965 7899999999988 8877765422 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 210 vGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 210 VGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 22 34578999988764
No 286
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.00 E-value=0.093 Score=52.51 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.|+| |++.|||-+ ..|..++.-|.+. |..|.+...+ ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 155 DIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999965 7899999999888 8888776431 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 209 IGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred CCCcCc---cC--HHHcCCCcEEEEee
Confidence 985433 22 23478999988863
No 287
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.99 E-value=0.1 Score=44.18 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.8
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH---HcCceecCCCcCCHHhhhccCCeEEEeecchhHHH-HHH
Q 014863 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE 196 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~~~-Vl~ 196 (417)
+-+..++..|++. |.+|.+.+..-.. ..... ..++.. +.+.+++++++|.||++++-....+ -++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~ 85 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWE 85 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHH
Confidence 5667788888888 9988776544322 22222 246664 5688999999999999999888876 466
Q ss_pred HHHhcCCCCcEEEEeccc
Q 014863 197 KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 197 eI~p~Lk~GaiL~~a~G~ 214 (417)
++...|+++.+|++.-++
T Consensus 86 ~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 86 EIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHSCSSEEEEESSST
T ss_pred HHHHhcCCCCEEEECccc
Confidence 788888888899988764
No 288
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.97 E-value=0.071 Score=53.85 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=57.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.+.++.+++||+|+.+
T Consensus 164 ~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 164 PIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIAA 217 (299)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6889 999999966 7899999999888 8888776431 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-. .++. ..++|+|++|++++
T Consensus 218 vGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 218 AGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred CCCc---CccC--HHHcCCCCEEEEee
Confidence 9753 2332 24578999988764
No 289
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.89 E-value=0.081 Score=52.99 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|.| +++.|||-+ ..|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 46889 999999988 5699999999988 8888776542 1256678899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++--..... .+.+|+|++|++++
T Consensus 206 AvG~p~~i~-----~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHFIK-----ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccccc-----cccccCCCEEEecC
Confidence 997433222 46689999988775
No 290
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.1 Score=52.43 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ ..++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999888 8877765432 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++|+|++|+|++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 98432 222 24578999988764
No 291
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.84 E-value=0.11 Score=52.11 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=57.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|+| |+|.|||-+ ..|..++.-|... +..|.+.... ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 36889 999999965 7899999999888 8887765432 1256677899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... +. ..++++|++|++++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9985433 22 24578999988764
No 292
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.071 Score=56.13 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=50.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch----hHHHHHHcCceecCCCcCCHHhhhccCC
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~~~~~~~Eav~~AD 180 (417)
.+.+.+ ++|+|+|+|..|.++|+-|++. |++|.+.++.... ..+...+.|+.... -....+.+.++|
T Consensus 9 ~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d 79 (458)
T PRK01710 9 KKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFD 79 (458)
T ss_pred hhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCC
Confidence 356778 9999999999999999999999 9988877654321 12345566875410 012245568899
Q ss_pred eEEEe
Q 014863 181 LVLLL 185 (417)
Q Consensus 181 iViLa 185 (417)
+||+.
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99886
No 293
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.76 E-value=0.34 Score=51.52 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=42.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCc--eEEEEecCCchhHHHHHH--cC-------ceecCCCcCCHHhhhcc
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI--VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s-~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G-------~~~~d~~~~~~~Eav~~ 178 (417)
-||+|||. |++|.++|-.|... +-+...++ ++++.+...+.....+.+ ++ +.. ..+..+.+++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i----~~~~ye~~kd 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI----GIDPYEVFQD 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE----ecCCHHHhCc
Confidence 58999999 99999999988654 00000022 455555444433322221 11 111 1244578899
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
||+||+.--
T Consensus 177 aDiVVitAG 185 (444)
T PLN00112 177 AEWALLIGA 185 (444)
T ss_pred CCEEEECCC
Confidence 999999764
No 294
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.75 E-value=0.095 Score=52.59 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|... +..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 155 DISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIVA 208 (284)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 5889 999999955 8899999999887 8777765421 23577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++++|++|++++
T Consensus 209 vG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 209 VGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred cCCCC---cCC--HHHcCCCCEEEEee
Confidence 97543 232 23468999998875
No 295
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.75 E-value=0.1 Score=52.96 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=42.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCceEEEEecCCchhHHHHHHcCcee------cC-CCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-GTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~------~d-~~~~~~~Eav~~ADiV 182 (417)
.||+|||. |.+|.+++..|... +..-..+.++++.++........+...-+.. .+ ....+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 0000002367666654321111111111110 00 0024556889999999
Q ss_pred EEee
Q 014863 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9875
No 296
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.73 E-value=0.22 Score=49.83 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=54.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH---------cCceecCCCcCCHHhhhccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~---------~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
+||+|||.|.+-.+...-.+.. +.+.. +.+.+.++...+.+++ .+.........+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987755444333 11233 3456666655555432 11111000011222235688999
Q ss_pred EEeecch----hHHHHHHHHHhcCCCCcEEE--Eeccchhhhhhc-cccCCCCCCcE-EEeccCCc
Q 014863 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFLLGHLQS-MGLDFPKNIGV-IAVCPKGM 240 (417)
Q Consensus 183 iLavpd~----a~~~Vl~eI~p~Lk~GaiL~--~a~G~~i~~~~~-~~i~~~~di~V-I~v~Pn~p 240 (417)
+++.-.. .=.++++.+..+|++|+.|+ ..+|..--.+-. ..-.+ .+.++ ..+||.++
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l-~gf~~~~~~hP~~~ 261 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDL-RGFEVLAVVHPTDE 261 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGG-TTEEEEEEE---TT
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHC-CCeEEEEEECCCCC
Confidence 9998776 44579999999999999876 677764211100 00011 14444 68899643
No 297
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.73 E-value=0.078 Score=53.51 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=42.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----cCcee-cC--CCcCCHHhhhccCCeEE
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTE-EN--GTLGDIYETISGSDLVL 183 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~-~d--~~~~~~~Eav~~ADiVi 183 (417)
||+|||.|.+|.++|..|... ++ ++++.+.........+.+ .-+.. .+ -...+ .+.+++||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 799999999999999999887 65 566665543322222222 11110 00 01223 46789999999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9864
No 298
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.12 Score=51.87 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=57.2
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIsA 207 (282)
T PRK14166 154 DLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIVA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999887 7777765432 13577889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 208 vGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 208 AGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 22 23578999988764
No 299
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.70 E-value=0.086 Score=55.91 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=49.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC-CHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~-~~~Eav~~ADiViL 184 (417)
..+.+ ++|.|+|+|-.|.++|+-|++. |.+|.+.++......+...+.|+... .. ...+-+.++|+||.
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~~d~vV~ 80 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADI---STAEASDQLDSFSLVVT 80 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEE---eCCCchhHhcCCCEEEe
Confidence 45667 9999999999999999999999 99887766543332233455677541 11 23345678999887
Q ss_pred e
Q 014863 185 L 185 (417)
Q Consensus 185 a 185 (417)
.
T Consensus 81 S 81 (473)
T PRK00141 81 S 81 (473)
T ss_pred C
Confidence 5
No 300
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.67 E-value=0.24 Score=50.38 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=41.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--cCceec--CCC-cC-CHHhhhccCCeEEEe
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE--NGT-LG-DIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~--d~~-~~-~~~Eav~~ADiViLa 185 (417)
+||+|||.|.+|.+.|..|... +.+.++++.+.......-.+.+ ++.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999665 1233566666552222222221 010000 000 11 125678999999998
Q ss_pred e
Q 014863 186 I 186 (417)
Q Consensus 186 v 186 (417)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
No 301
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.66 E-value=0.74 Score=46.86 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=89.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecch
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~ 189 (417)
.||+||| .|..|..+.+-|.+. . +++.....+..+ .. . +.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~~~~-------~~-~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEAKRK-------DA-A-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecCCCC-------cc-c-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999988765 3 243322222111 11 1 2345567899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeecCCC
Q 014863 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~ 269 (417)
...++.+++. +.|..|+|.++- + .+ +-+++.+.|.-... .|+..+. .. +|+ ..++
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSad----f-----Rl--~~~~~yglPEvn~~-~~~~i~~--------~~-~Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALID---NPATRVIDASTA----H-----RT--APGWVYGFPELAPG-QRERIAA--------AK-RVA-NPGC 116 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECChh----h-----hc--CCCCeEEcCccCHH-HHHHhhc--------CC-eEE-cCCc
Confidence 8888887764 358888877763 1 11 11677777854322 2333332 22 244 5556
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHH
Q 014863 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 270 sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea 319 (417)
...+.-+++.=+..-|.. ++.....+...+..+|++-..++.
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~ 158 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAA 158 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHH
Confidence 666665555544444432 121123455556667777665444
No 302
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.65 E-value=0.12 Score=52.02 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 157 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVsA 210 (294)
T PRK14187 157 NLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVAA 210 (294)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999888 8777765432 13567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|++++
T Consensus 211 vGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 211 VGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 22 23468999988763
No 303
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.65 E-value=0.087 Score=54.07 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
..++| ++|.|||.|-||.-.+++|++. |. ++++.+|+... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 35788 9999999999999999999999 86 68888887421 111100 0011133468999999
Q ss_pred ee
Q 014863 185 LI 186 (417)
Q Consensus 185 av 186 (417)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 304
>PRK15076 alpha-galactosidase; Provisional
Probab=94.61 E-value=0.08 Score=55.88 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCceEEEEecCCchhHHHH--------HHcCc--eecCCCcCCHHhhhcc
Q 014863 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGF--TEENGTLGDIYETISG 178 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A--------~~~G~--~~~d~~~~~~~Eav~~ 178 (417)
|+||+|||.|+||.+.+. .+... ..-.+.+|++.+.. .+..+.+ ...+. .. ..++|..+++++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i--~~ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDID-PERLEESEIVARKLAESLGASAKI--TATTDRREALQG 75 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEE--EEECCHHHHhCC
Confidence 579999999999977665 65422 00114466665543 3322211 11221 11 114567899999
Q ss_pred CCeEEEeecch
Q 014863 179 SDLVLLLISDA 189 (417)
Q Consensus 179 ADiViLavpd~ 189 (417)
||+||.++-..
T Consensus 76 ADfVv~ti~vg 86 (431)
T PRK15076 76 ADYVINAIQVG 86 (431)
T ss_pred CCEEeEeeeeC
Confidence 99999998764
No 305
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.58 E-value=0.34 Score=48.60 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=62.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC--CchhHHHHHHcCceecCCCcCCHHh--hhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~~E--av~~ADiVi 183 (417)
..| .+|.|+|.|.+|...++.++.. |.+|++..+. +.+..+.+++.|....+....+..+ .....|+||
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 367 8999999999999999999888 8887766653 3456778888887631111111111 224579999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-++.... .+.+....++++..++..
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 9997432 444555667777766544
No 306
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.14 Score=51.26 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=56.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~A 207 (282)
T PRK14182 154 DPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVAA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5789 999999966 7899999999887 7777765321 23567888999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-. .++. ..++|+|++|++++
T Consensus 208 vGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 208 IGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred cCCc---CccC--HHHcCCCCEEEEee
Confidence 9842 2332 24578999988764
No 307
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.56 E-value=0.19 Score=51.25 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcC-CHH----hhh--ccCCeEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~-~~~----Eav--~~ADiVi 183 (417)
.++.|+|.|.+|.-.++.++.. |...++..+.++..++.|++ .|......... +.. +.- ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4899999999999988888887 86444444555667889988 55442100001 111 122 3599999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-|+- ....+.+....++++-.|++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334566666777787766544
No 308
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.54 E-value=0.12 Score=53.49 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=56.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+...+ ..++.+.+++||+||.+
T Consensus 228 ~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIsA 281 (364)
T PLN02616 228 EIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIISA 281 (364)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999955 7899999999888 7777765321 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|+|++
T Consensus 282 vGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 282 VGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred CCCcCc---CC--HHHcCCCCEEEecc
Confidence 985432 22 24578999988764
No 309
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.53 E-value=0.12 Score=54.50 Aligned_cols=70 Identities=27% Similarity=0.183 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHHHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
.+++ ++|.|||.|..|.+.|..|++. |.+|.+.++.+. ...+..++.|+... .....+....+|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 3567 8999999999999999999998 999887765432 11234556687642 11212234579999
Q ss_pred EEee
Q 014863 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|+++
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9886
No 310
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.45 E-value=0.15 Score=51.19 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=56.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh--hhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~--s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++++.+++||+||
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIvV 208 (284)
T PRK14193 155 ELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADIIV 208 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEEE
Confidence 5789 999999955 889999999976 5 6667665431 236778899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
.++.-.. ++. ..++|+|++|++++
T Consensus 209 ~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 209 AAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 9998543 222 24578999988764
No 311
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.42 E-value=0.14 Score=52.70 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=56.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |+|.|||-+ ..|..+|.-|.+. +..|.+.... ..+.++.+++||+||.+
T Consensus 211 ~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIsA 264 (345)
T PLN02897 211 EIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIAA 264 (345)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999965 7899999999887 7777665432 12567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-... +. ..++|+|++|+|++
T Consensus 265 vGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 265 AGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985433 22 23578999988764
No 312
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.38 E-value=0.17 Score=52.76 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=49.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH----HHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
+++ ++|.|||.|.+|.++|+.|.+. |++|.+.++.....+ +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999999 999888776542222 222334554210 112234567899999
Q ss_pred Eeec
Q 014863 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9875
No 313
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.26 E-value=0.095 Score=52.32 Aligned_cols=77 Identities=22% Similarity=0.126 Sum_probs=52.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcC--ceecCCCcCC---HHhhhccCC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGD---IYETISGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G--~~~~d~~~~~---~~Eav~~AD 180 (417)
.+++ +++.|||.|-.|.|++-.|.+. |. ++.+.+|..++..+.+.... +........+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 4567 8999999999999999999988 87 67788887665555554321 1000000112 233567899
Q ss_pred eEEEeecchh
Q 014863 181 LVLLLISDAA 190 (417)
Q Consensus 181 iViLavpd~a 190 (417)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999999543
No 314
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=94.25 E-value=0.22 Score=50.29 Aligned_cols=118 Identities=8% Similarity=0.137 Sum_probs=78.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~--ADiViLavpd 188 (417)
.||.|.| .|--|..+-..+... |-+++.|.....- ..+-.|... ..++.|+... .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 799999999999998 9898888766420 011246664 5688887765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhh
Q 014863 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~ 243 (417)
....+.+++.... .-..+|++++||...-.++.....-..-.+-.+=||+.|-.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceee
Confidence 9999999886542 22347789999963311110001111223444567776554
No 315
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.21 E-value=0.13 Score=51.77 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=55.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |+|.|||-+ ..|..++.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 35889 999999965 78999999887610000 5566654422 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+++-. .++. ..++|+|++|++++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99644 3332 23458999988765
No 316
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.19 E-value=0.35 Score=44.08 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.6
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----c--hhH----HHHHHcCc--eecCCCcCCHHh
Q 014863 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (417)
Q Consensus 109 ~g~kkIgIIG--~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~--~s~----~~A~~~G~--~~~d~~~~~~~E 174 (417)
+| +||++|| .+++..|++..+... |.++.+....+ . .-+ +.+.+.|. .. ..+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 489999999999988 99876655443 1 122 22333443 32 468999
Q ss_pred hhccCCeEEEeecc
Q 014863 175 TISGSDLVLLLISD 188 (417)
Q Consensus 175 av~~ADiViLavpd 188 (417)
+++++|+|+.-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999998877655
No 317
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.14 E-value=0.14 Score=51.99 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCC--chhH----HHHHH-----cCceecCCCcCCHH
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARA-----AGFTEENGTLGDIY 173 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~--~~s~----~~A~~-----~G~~~~d~~~~~~~ 173 (417)
||+|||. |.+|.+++..|... ++ ++++.+... +... +.... .+... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999876 43 355555543 2111 11110 01111 13566
Q ss_pred hhhccCCeEEEee
Q 014863 174 ETISGSDLVLLLI 186 (417)
Q Consensus 174 Eav~~ADiViLav 186 (417)
+.+++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999875
No 318
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.13 E-value=0.13 Score=52.31 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCchhHHHHHHcCceec-----CC--CcCCHHhhhc
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~-----d~--~~~~~~Eav~ 177 (417)
||+|||. |.+|.++|..|... ++ ++++.++........+...-.... .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 355555432211111111101000 00 0124467899
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
+||+||++--
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999998764
No 319
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.09 E-value=0.13 Score=54.16 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=50.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh----hhcCCceEEE-EecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~----~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViL 184 (417)
.+|||||+|.+|..+++.|.+..+ ..|.++++.. .+++..+ .......+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 589999999999999988865411 1222344432 3333211 1111011112 1457888885 5799999
Q ss_pred eecch-hHHHHHHHHHhcCCCCcEEEE
Q 014863 185 LISDA-AQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 185 avpd~-a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
++++. .+.++. ...|+.|+.|+.
T Consensus 79 ~tg~~~~~~~~~---~~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELI---LKALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHH---HHHHHCCCeEEE
Confidence 98753 333333 344566765543
No 320
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.03 E-value=0.19 Score=47.91 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=60.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiViLavp 187 (417)
|||+||| .|..|..+++-..+. |++|....|+.++... . .+.......+. ...+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~--~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAA--R-QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhccc--c-ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7999999 799999999999999 9999888887554322 1 23322122222 33467889999999875
Q ss_pred ch------hHHHHHHHHHhcCCC-CcE-EEEeccch
Q 014863 188 DA------AQADNYEKIFSCMKP-NSI-LGLSHGFL 215 (417)
Q Consensus 188 d~------a~~~Vl~eI~p~Lk~-Gai-L~~a~G~~ 215 (417)
.. .+.+..+.+...++. |.. +.+++|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33 222333345555544 432 56677753
No 321
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.90 E-value=0.2 Score=47.28 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|+. +||.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 477888 9999999999999999999998 87 444444
No 322
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.86 E-value=0.16 Score=48.71 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. ++|.|||+|..|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 367788 9999999999999999999998
No 323
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.83 E-value=0.13 Score=51.72 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=55.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~----s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
.++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++.+.+++||+
T Consensus 154 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~ADI 207 (286)
T PRK14184 154 SPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREADF 207 (286)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCCE
Confidence 5889 999999965 789999999987 4 5666665422 1257788999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
||.++.-.. ++. ..++++|++|++++
T Consensus 208 VI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 208 LFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 999996433 232 13458999988765
No 324
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.80 E-value=2.3 Score=43.43 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh----hhcCCceEE-EEecCCc---------hhH-HHHHHcCceec--C--C-CcCC
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~----~~~~G~~Vi-vg~r~~~---------~s~-~~A~~~G~~~~--d--~-~~~~ 171 (417)
.+|+|+|+|+.|..+++.|.+.-+ ..|..++|+ +.+++.. ..+ +...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999998877311 122224433 2232210 111 11112121100 0 0 0115
Q ss_pred HHhhh--ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 172 ~~Eav--~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
.+|.+ .++|+||=++++....+++.++ ++.|..|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66766 5799999999877666666554 44566554
No 325
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.80 E-value=0.33 Score=49.94 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEE-EEecCCchhHHHHHHcCceecCCCcCCHHhhhccC--CeEEEeecc
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~A--DiViLavpd 188 (417)
-++||+|+|.|+.=.+++|.-. +++ ++.|+ +..+..+.+.+.|+..++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s--~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PES--NHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-ccc--CcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998654 111 55543 34454556778888888831 23467999999876 999999999
Q ss_pred hhHHHHHHHHHh
Q 014863 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~a~~~Vl~eI~p 200 (417)
.+|.++.-.++.
T Consensus 83 ~qH~evv~l~l~ 94 (351)
T KOG2741|consen 83 PQHYEVVMLALN 94 (351)
T ss_pred ccHHHHHHHHHH
Confidence 999988765443
No 326
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.80 E-value=0.38 Score=51.54 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=66.5
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-----ceec------
Q 014863 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEE------ 165 (417)
Q Consensus 107 ~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~~------ 165 (417)
.++| +||+|+|+ .+-...++..|.+. |.+|.+++..-. ..+.....+ +...
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVT-EEQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCC-hHHHHHHhhccccccccccccccc
Confidence 4788 99999998 56777888888888 998877654321 111111121 1000
Q ss_pred -------CCCcCCHHhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 014863 166 -------NGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 166 -------d~~~~~~~Eav~~ADiViLavpd~a~~~V-l~eI~p~Lk~GaiL~~a~G~ 214 (417)
-..+.+..+++++||+|++++.-....++ ++.+.+.|++..+|+|.-++
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 00134567899999999999998877653 56677778765578887665
No 327
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.79 E-value=0.19 Score=50.68 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=55.4
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
.++| |++.|||-+ ..|..++.-|.+. | ..|.+...+ ..++.+.+++||+
T Consensus 154 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~ADI 207 (293)
T PRK14185 154 ETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEADI 207 (293)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCCE
Confidence 5889 999999966 7899999999765 4 356554322 1356788899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
||.++.-... +. ..++|+|++|++++
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9999985433 22 24578999988764
No 328
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.79 E-value=0.57 Score=45.47 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=61.9
Q ss_pred hhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH-HHHHHcCceecCCCcC
Q 014863 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~ 170 (417)
.++-+....|+.. -.++| ++|.|||.|.+|..=+..|.+. |.+|.|....-.+.+ +.+....+....+. .
T Consensus 8 ~~~~~~~~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~-~ 78 (223)
T PRK05562 8 DIYNEENKYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGN-Y 78 (223)
T ss_pred HHhhccCCEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-C
Confidence 3333334455544 46778 8999999999999999999998 887777654433333 33332223321111 2
Q ss_pred CHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 171 DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 171 ~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
+.. -+.++++||.||.|...-+-+.+..
T Consensus 79 ~~~-dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 79 DKE-FIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred ChH-HhCCCcEEEECCCCHHHHHHHHHHH
Confidence 223 3678999999999988765444443
No 329
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.77 E-value=0.17 Score=53.16 Aligned_cols=66 Identities=29% Similarity=0.281 Sum_probs=46.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
.++| ++|.|||+|-.|.+.|+-|++. |++|.+.++.... .....+.|+... ..+ .+-+.++|+||.
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~-~~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPAS-RAKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhh-HHHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 3678 9999999999999999999998 9988766644322 223445677531 112 234578998886
No 330
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.74 E-value=0.14 Score=55.30 Aligned_cols=76 Identities=25% Similarity=0.192 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEEEe
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiViLa 185 (417)
.+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+...+.... ...+..+. ...+|+|+.+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEec
Confidence 3667 8999999999999999999998 88888888765555555544432110 01222222 2357888888
Q ss_pred ecchhH
Q 014863 186 ISDAAQ 191 (417)
Q Consensus 186 vpd~a~ 191 (417)
+|....
T Consensus 447 T~vGm~ 452 (529)
T PLN02520 447 TSVGMQ 452 (529)
T ss_pred ccCCCC
Confidence 887653
No 331
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.70 E-value=0.18 Score=52.40 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc--hhHHHHHHcCceecC-CCcCCHH-hhhccCCeEEEee
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~d-~~~~~~~-Eav~~ADiViLav 186 (417)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999995 89999999887665 1345554443211 1111110 0000000 0011222 2258899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|.....++.+.+ +.|..|++.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666553 457778877663
No 332
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.70 E-value=0.37 Score=49.36 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=56.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------chhHH---HHHH
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~---------------------~~s~~---~A~~ 159 (417)
.+.|+. .||.|||+|-+|..+|++|... |+ ++.+.++.. .+... ...+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467888 9999999999999999999998 77 566655431 11111 1111
Q ss_pred --cCceec--CCC--cCCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 --AGFTEE--NGT--LGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 --~G~~~~--d~~--~~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+... ... ..+..+.++++|+||.++-+.....++.++.
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 111110 001 1234567899999999988777666666544
No 333
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=93.68 E-value=0.27 Score=49.66 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=52.4
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| .||++||-| ++..|++..+... |++|.+...++- .-.+.+++.|.... ...++++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 4788 999999985 9999999999887 998877654421 22456666665421 146899999999
Q ss_pred CeEEEe
Q 014863 180 DLVLLL 185 (417)
Q Consensus 180 DiViLa 185 (417)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
No 334
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.68 E-value=0.43 Score=45.81 Aligned_cols=81 Identities=17% Similarity=0.036 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- ++-.....+.++...+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 56889 9999999999999999999998 88887766554 3333344444422111 123444444 4999999
Q ss_pred eecchhHHHHH
Q 014863 185 LISDAAQADNY 195 (417)
Q Consensus 185 avpd~a~~~Vl 195 (417)
+|.|....+-+
T Consensus 79 At~d~~ln~~i 89 (210)
T COG1648 79 ATDDEELNERI 89 (210)
T ss_pred eCCCHHHHHHH
Confidence 99998876533
No 335
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.64 E-value=0.19 Score=51.49 Aligned_cols=90 Identities=21% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc---hhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~---~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|+||+||| .|..|..+.+-|.++ ++ ..+....... +...... ...... -.+..+ ++++|+||+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~-~~l~~~---~~~~~~-~~~vD~vFl 72 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAG-KNLRVR---EVDSFD-FSQVQLAFF 72 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCC-cceEEe---eCChHH-hcCCCEEEE
Confidence 36899999 599999999999875 44 1112222211 1111100 011110 012233 578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++|.....++.+++.. .|..++|.+|-
T Consensus 73 a~p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 73 AAGAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred cCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence 9998766666655533 57778877763
No 336
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.59 E-value=0.32 Score=45.91 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|+. .+|.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467788 9999999999999999999998 87 354444
No 337
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.56 E-value=0.23 Score=50.48 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCc--hhHHHHHHcCceecCCCcCCHH-hhhccCCeEE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIY-ETISGSDLVL 183 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~-Eav~~ADiVi 183 (417)
|+||+||| .|..|..+.+-|.+. ++ ++....+..+ +... -.|... .+.+.. +.++++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEE
Confidence 37999999 789999999999886 55 3333333221 2111 112111 022221 3457899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|+|.....++.+.+. +.|..|++.++
T Consensus 69 ~A~g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 69 FSAGGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred ECCChHHHHHHHHHHH---hCCCEEEECCc
Confidence 9999988888777653 45777777665
No 338
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.56 E-value=0.52 Score=45.78 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=57.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecCCCcCCHHhhh------ccCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav------~~ADi 181 (417)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+.+..+.+++.|....-. ..+..+.+ ...|+
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCE
Confidence 67 8999999999999999988888 886 5544 44455678888888742100 01111211 24799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+-++.... .+++....++++..++..
T Consensus 191 vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 988875322 333444556666655544
No 339
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.55 E-value=0.3 Score=49.50 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=42.2
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--chhHHHHHHcC-ceecCCCcC-CHHhhhccCCeEEEe
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~d~~~~-~~~Eav~~ADiViLa 185 (417)
||+|||. |++|.++|..|... ++ ++++.+... ...++...... ......+.. +..+++++||+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 7999999 99999999999877 65 565555432 12222221111 111000001 236789999999988
Q ss_pred ecc
Q 014863 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
.-.
T Consensus 75 aG~ 77 (312)
T TIGR01772 75 AGV 77 (312)
T ss_pred CCC
Confidence 753
No 340
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.52 E-value=0.39 Score=47.45 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecc
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd 188 (417)
+| +++.|+|.|.+|...++-++.. |.++++..+.+...++.|.+.++.. ..++.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 8899999999999999888887 8875555555455556665554331 111122468999999886
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 014863 189 AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 189 ~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.. .++...+.++++-.+++.
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 334445566666665544
No 341
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.51 E-value=0.15 Score=52.65 Aligned_cols=84 Identities=17% Similarity=0.053 Sum_probs=52.7
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce---e-cCC----C------c--CCHH-
Q 014863 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG----T------L--GDIY- 173 (417)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~---~-~d~----~------~--~~~~- 173 (417)
|||.++|.|+||+++ +.-|.++ |++|++.+.. +...+...+.|.- . .+. . + .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999976 6666666 8887666543 3344444455631 1 011 0 1 0112
Q ss_pred --hhhccCCeEEEeecchhHHHHHHHHHhcC
Q 014863 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (417)
Q Consensus 174 --Eav~~ADiViLavpd~a~~~Vl~eI~p~L 202 (417)
+.+..+|+|++++++.....+...+.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999887766666665555
No 342
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.42 E-value=0.22 Score=53.06 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
..+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++. ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34567 9999999999999999999988 9988876644 3334445667875410 11234567789998886
Q ss_pred e
Q 014863 186 I 186 (417)
Q Consensus 186 v 186 (417)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 5
No 343
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=93.41 E-value=0.24 Score=50.80 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---eEEE-E-ecCCchhHHHHHHcCceecCCCcCC-HHhhhccCCeEEE
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKV-G-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Viv-g-~r~~~~s~~~A~~~G~~~~d~~~~~-~~Eav~~ADiViL 184 (417)
.||+||| .|..|..+.+-|.++ ++ ++.+ . .+...+.... .|... .+.+ ..+.+.++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 789999999888876 54 2222 2 2222222211 12111 0111 1245689999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++|.....++.+++. +.|..|+|.++-
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999997777777653 368888888763
No 344
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.38 E-value=0.72 Score=46.12 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=60.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc---cCCeE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLV 182 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~---~ADiV 182 (417)
.+| ++|.|+|.|.+|...++-++.. |. +|++..+. .+..+.+++.|.... +..-.+..+... ..|+|
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEE
Confidence 357 8999999999999999988888 87 45555444 456788888887421 100112233222 37999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+-++.... .++.....+++|-.++..
T Consensus 240 id~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 240 FEVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 99987532 334444556777666544
No 345
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=93.26 E-value=0.073 Score=48.13 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=52.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+..+| +||++||+ +.+ ++..|+.. +.++.+.++.... ... ...++. ....++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 323 67777766 7788888776322 111 112232 35678999999998865
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
-. ...-..++.|..+.++++.+++.
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEEEEE
T ss_pred ee-eeecCCHHHHHHhCccCCeEEEE
Confidence 32 22234555666666656655433
No 346
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=93.19 E-value=0.48 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s 133 (417)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
No 347
>PRK05086 malate dehydrogenase; Provisional
Probab=93.14 E-value=0.48 Score=47.86 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=41.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchh----HHHHHHc-CceecCCCcCCHHhhhccCCeEEEe
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s----~~~A~~~-G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
|||+|||. |.+|.+++..|...+ +.+.++.+.++. +.. ++..... -.........++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 69999999 999999999885521 113355555554 222 1211100 0111000013556788999999998
Q ss_pred ec
Q 014863 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
.-
T Consensus 77 aG 78 (312)
T PRK05086 77 AG 78 (312)
T ss_pred CC
Confidence 75
No 348
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=93.13 E-value=0.31 Score=49.65 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=54.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCch-hHHHHHHcC------ce--ecCCCcCC-HHhhhccC
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR-SFAEARAAG------FT--EENGTLGD-IYETISGS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~-s~~~A~~~G------~~--~~d~~~~~-~~Eav~~A 179 (417)
+||+|+|+ |-||..+++.|.+. . +++....+.... ......... .. ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 48999995 99999999988765 4 455444333211 011111111 10 00000111 22355889
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988887765533 57777777663
No 349
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.08 E-value=0.29 Score=50.89 Aligned_cols=70 Identities=20% Similarity=0.128 Sum_probs=47.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc---hhHHHHHHcCceecCCCcCCHHhhhcc-CCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~---~s~~~A~~~G~~~~d~~~~~~~Eav~~-ADiVi 183 (417)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+.... -....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVIC--GSHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEe--CCCCHHHhcCcCCEEE
Confidence 467 9999999999999999999999 999887765422 222334455765310 0123344444 89888
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 754
No 350
>PLN00106 malate dehydrogenase
Probab=93.07 E-value=0.22 Score=50.73 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc--hhHHHHHHcCc-eecC-CCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~-~~~d-~~~~~~~Eav~~ADiViL 184 (417)
.||+|||. |++|.++|..|... ++ ++++.+.... ..++....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 54 5655554331 11221111111 1101 012345789999999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 864
No 351
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.06 E-value=0.61 Score=43.10 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
||+|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 77 4555544
No 352
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.04 E-value=0.24 Score=50.19 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=42.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--eEEEEecC--CchhHHHHHHcC-ceecCC-CcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~--~~~s~~~A~~~G-~~~~d~-~~~~~~Eav~~ADiViL 184 (417)
+||+|||. |++|.++|..|... ++ ++++.+.+ ....++...... ...... ...++.+.+++||+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 55554433 122233222211 111000 01223578999999998
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 764
No 353
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.02 E-value=0.89 Score=47.28 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=89.9
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCc---eEEEEecCCchhHHHHHHcCceecCCCcCCH-H-hhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr-~s~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~-Eav~~ADiViL 184 (417)
++|||||+ |..|..+.+.|. +. .+ +++..... ++..+- ..|......+.+. + +..++.|+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999996 999999999887 44 33 22222211 111111 1110000012222 2 35788999999
Q ss_pred eecchhHHHHHHHHHhcCCCC--cEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEE
Q 014863 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~G--aiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~l 262 (417)
+.+.....++.+... +.| .+|++.++.- . -+-+|-.+-|---......... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa~----R-------md~dVPLVVPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASSL----R-------MKDDAVIILDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChhh----h-------cCCCCCEEeCCcCHHHHHhHHh-------CCcCe-
Confidence 999886666665544 467 6788877641 1 1124444556444443332112 24432
Q ss_pred EeecCCCCHHHHHHHH-HHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 263 iav~qd~sgea~e~a~-al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
|+ ..+++--..-.++ .|....|-.+++-+|+.. ++|++...++-+.+...
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt~ 179 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQMG 179 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHHH
Confidence 33 4566655444444 344445555555554322 67777776666655544
No 354
>PLN03075 nicotianamine synthase; Provisional
Probab=93.01 E-value=0.89 Score=45.99 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-----cCceec-CCCcCCHHhh---hccC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEE-NGTLGDIYET---ISGS 179 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~-d~~~~~~~Ea---v~~A 179 (417)
.. ++|..||+|..|.+-..-++..+. +- .+++.+.++...+.|++ .|+... .-...+..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 45 899999999987755444433310 11 35677777766665554 222100 0001222222 3688
Q ss_pred CeEEEeec----chhHHHHHHHHHhcCCCCcEEEE--eccc
Q 014863 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (417)
Q Consensus 180 DiViLavp----d~a~~~Vl~eI~p~Lk~GaiL~~--a~G~ 214 (417)
|+|++.+= .....++++.+..+|+||.++++ +||.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999952 24556899999999999998764 4554
No 355
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.00 E-value=0.29 Score=52.02 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=48.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-hhHHHHHHc--CceecCCCcC-CHHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~d~~~~-~~~Eav~~ADiVi 183 (417)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 456 8999999999999999999999 998876664322 222333344 43321 12 2345677899999
Q ss_pred Ee--ecc
Q 014863 184 LL--ISD 188 (417)
Q Consensus 184 La--vpd 188 (417)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 86 455
No 356
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.98 E-value=0.26 Score=48.99 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=50.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchh
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a 190 (417)
+++.|||.|-.+.|++..|.+. |. +|.+.+|..++..+.+...+.. ..+ .-....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~-~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRP-DLGGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chh-hcccccCCEEEECCcccc
Confidence 6899999999999999999988 87 5888899876666666554432 111 001256899999999654
Q ss_pred H
Q 014863 191 Q 191 (417)
Q Consensus 191 ~ 191 (417)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
No 357
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.96 E-value=0.61 Score=48.08 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhh-hccCCeEEE
Q 014863 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYET-ISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Ea-v~~ADiViL 184 (417)
|+||+||| -|--|.-+.+-|... ..+++.+...+..+-..... -.|.....-...+.++. ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 58999999 677777777766554 13354443322111001111 01221000001233443 445899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
|+|+..-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999998888877643 4555887765
No 358
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.89 E-value=0.39 Score=48.65 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.4
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecC----CchhHHHH----HHcC--ceecCCCcCCHHhhh
Q 014863 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (417)
Q Consensus 108 l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~----~~~s~~~A----~~~G--~~~~d~~~~~~~Eav 176 (417)
|+| +||++||=| ||+.|+...-..- |+++.+.... ++.-++.| .+.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 889 999999966 7888888777766 9988876543 33333444 3345 333 46899999
Q ss_pred ccCCeEEEeecchhH--HHHHHHHHhcCC
Q 014863 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (417)
Q Consensus 177 ~~ADiViLavpd~a~--~~Vl~eI~p~Lk 203 (417)
++||+|.-=|....- .+..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999876653322 223444444443
No 359
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.87 E-value=0.75 Score=40.40 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
||.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 455543
No 360
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.84 E-value=0.68 Score=46.28 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEeec
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLavp 187 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. .+..+.+++.|... +.+. ++.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999888877777 8887665554 44578999999753 2221 111235788887766
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEe
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.. +.+......++++-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3566666778777766544
No 361
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.83 E-value=0.43 Score=46.53 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. +||.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 578888 9999999999999999999998
No 362
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.81 E-value=1.6 Score=45.52 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHhhhhhhcCCce---EEEEecCCchhHHHHHHc-CceecCCCcCC--HHhhhccCCeE
Q 014863 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGD--IYETISGSDLV 182 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~-~Lr~s~~~~~~G~~---Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~--~~Eav~~ADiV 182 (417)
|++|||||. |..|.-+.+ -|... .+. +.. ..+. ++-..-... |-.. .+.+ ..+.++++|+|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~~~f~g~~~---~v~~~~~~~~~~~~Div 69 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAAPSFGGKEG---TLQDAFDIDALKKLDII 69 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCcccccCCCcc---eEEecCChhHhcCCCEE
Confidence 579999995 999999997 55444 443 433 2221 111111111 1110 0111 12445789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCC--cEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCce
Q 014863 183 LLLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI~p~Lk~G--aiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~ 260 (417)
|+++|.....++.+++.. .| .+|++.++. +. -+-++..+-|---.......-. .|+.
T Consensus 70 f~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~----fR-------~~~dvplvvPEvN~e~i~~~~~-------~g~~ 128 (369)
T PRK06598 70 ITCQGGDYTNEVYPKLRA---AGWQGYWIDAAST----LR-------MKDDAIIILDPVNRDVIDDALA-------NGVK 128 (369)
T ss_pred EECCCHHHHHHHHHHHHh---CCCCeEEEECChH----Hh-------CCCCCcEEcCCcCHHHHHhhhh-------cCCC
Confidence 999999877777776543 57 567877764 11 1115666777555444332111 2333
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 261 SSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 261 ~liav~qd~sgea~e~a~al~~aiG~~-~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
. |+ ..+++..+.-+++.=+...|.. +++-+ .-..++|++...++-+.+...
T Consensus 129 i-Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 129 T-FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQMG 180 (369)
T ss_pred E-EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHHHH
Confidence 2 44 6666766666666555555543 22222 224578888776666655443
No 363
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.76 E-value=0.44 Score=47.94 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..++.-|.+. .+..+..|.+.... ..++++.+++||+||.+
T Consensus 150 ~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~A 207 (287)
T PRK14181 150 PLHG-RHVAIVGRSNIVGKPLAALLMQK--HPDTNATVTLLHSQ-------------------SENLTEILKTADIIIAA 207 (287)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHhC--cCCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999966 7899999999765 00002355543221 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+.-.. ++. ..++|+|++|++++
T Consensus 208 vG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 208 IGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEec
Confidence 98543 222 24578999988765
No 364
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.73 E-value=0.21 Score=51.05 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=45.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCcee
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (417)
+--+| .+++|+|+|..|.|.+++.|.. |..-|++.+-+++..++|++.|++.
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 33467 8999999999999999999999 8866789888888899999999985
No 365
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.65 E-value=2.9 Score=44.15 Aligned_cols=171 Identities=20% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhH--HHHHHc--Ccee----------------cCCCc
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTE----------------ENGTL 169 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~--~~A~~~--G~~~----------------~d~~~ 169 (417)
|.+|-|+|.|..+--+|..++.. +. +|=+..|...++. -.+.+. +... .|...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 67899999999999999999876 33 4444556543332 222222 2110 01224
Q ss_pred CCHHhhhccCCeEEEeecchhHHHHHHHHHhc-CCC-CcEEEEeccchhhhhhcccc-CCCCCCcEEEe----------c
Q 014863 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKP-NSILGLSHGFLLGHLQSMGL-DFPKNIGVIAV----------C 236 (417)
Q Consensus 170 ~~~~Eav~~ADiViLavpd~a~~~Vl~eI~p~-Lk~-GaiL~~a~G~~i~~~~~~~i-~~~~di~VI~v----------~ 236 (417)
.+.+++..+=|.+|||||-++..+|+++|-+. |+. .++|.++..|.-+.+.+..+ ....++.||.. .
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 46777888889999999999999999875432 332 23555666554221111000 12236666632 2
Q ss_pred cCCchhhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhh
Q 014863 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQE 297 (417)
Q Consensus 237 Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~qd~sgea~e~a~al~~aiG~~~-~iett~~~E 297 (417)
+..|-.+.-...++ ..++. ..+.....++....++..+|-.- ...+-++.|
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE 206 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAE 206 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhh
Confidence 33343443322222 12233 33455577888889999999653 344444444
No 366
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.63 E-value=0.63 Score=48.03 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=53.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC-------------------CchhHHHHHH-----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARA----- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~-------------------~~~s~~~A~~----- 159 (417)
.+.|++ ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....+..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 77 45555543 1121111111
Q ss_pred cCceec--CCCc--CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~~~--d~~~--~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+... .... .+..+.++++|+||.++-.......+.++.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111110 0111 123456789999999987665555555543
No 367
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.61 E-value=0.39 Score=45.85 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
.+.|+. .+|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 477888 9999999999999999999988 76 3555443
No 368
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.55 E-value=0.62 Score=49.36 Aligned_cols=73 Identities=27% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-NG 167 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d~ 167 (417)
.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+.+++.|+... +.
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 67 9999999999999999999998 998877765421 12456677787532 11
Q ss_pred CcC---CHHhhhccCCeEEEeecc
Q 014863 168 TLG---DIYETISGSDLVLLLISD 188 (417)
Q Consensus 168 ~~~---~~~Eav~~ADiViLavpd 188 (417)
.+. ..++...+.|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 111 234445679999999853
No 369
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.51 E-value=0.4 Score=51.85 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC--------------------chhHHHHHHcCceec-
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (417)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+.. ....+.+.+.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4568 9999999999999999999998 99887765321 123456777886431
Q ss_pred CCCc-C--CHHhhhccCCeEEEeecch
Q 014863 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (417)
Q Consensus 166 d~~~-~--~~~Eav~~ADiViLavpd~ 189 (417)
+... . +.++.-...|.||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 1333345689999999643
No 370
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.49 E-value=0.47 Score=47.54 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEeecchhH
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLavpd~a~ 191 (417)
++|+|||--.=-..+++.|.+. |++|.+..-++.. . ...|... +.+.++++++||+|++.+|+..-
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~~~ 68 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGTND 68 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccccC
Confidence 8999999988888999999998 9988774322211 1 2347764 45678899999999999886311
Q ss_pred ----HH-------HH-HHHHhcCCCCcEEE
Q 014863 192 ----AD-------NY-EKIFSCMKPNSILG 209 (417)
Q Consensus 192 ----~~-------Vl-~eI~p~Lk~GaiL~ 209 (417)
.. .+ ++....|++|+++.
T Consensus 69 ~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 69 EGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred CceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 01 11 35677889997544
No 371
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=92.45 E-value=0.73 Score=41.07 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=64.2
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccc-cchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014863 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (417)
Q Consensus 263 iav~qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL-~G~~~a~iea~~~~~v~~Gl~~e~A~~~~~~~ 341 (417)
++++. +.++.+.+..|+..+|+. ++.. .+..-.+|+..+++ |+.+.+++....+.+.++|+++++|++...--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~-~~~i---~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGR-PFEI---DSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSE-EEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCc-eEEe---CHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 44555 789999999999999985 3322 33344588888886 88899999999999999999999988755444
Q ss_pred HHHHHHHHHHHhcHHHHHhcccCch
Q 014863 342 ITGIISKIISTQGMLAVYNSFSGED 366 (417)
Q Consensus 342 l~~~~~~li~e~G~~~l~~~vs~~~ 366 (417)
+. +..+=+.+.|. .+..+.|-
T Consensus 78 i~-~t~~n~~~~g~---~~alTGP~ 98 (132)
T PF10728_consen 78 IR-ETLENILQLGP---ADALTGPA 98 (132)
T ss_dssp HH-HHHHHHHHS-H---HHH--SCC
T ss_pred HH-HHHHHHHhcCc---hhccCCCc
Confidence 44 55556666555 36667774
No 372
>PRK08328 hypothetical protein; Provisional
Probab=92.41 E-value=0.66 Score=44.79 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.+
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~------Gvg~i~lvD 58 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA------GVGRILLID 58 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 577888 9999999999999999999998 76 444443
No 373
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.38 E-value=0.81 Score=47.06 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHHHHHH-----
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (417)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 477888 9999999999999999999988 76 444443321 011111111
Q ss_pred cCceec--CCCc--CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~~~--d~~~--~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+..+ .... .+..+.++++|+|+.++-+.....++.+..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111110 0111 123467899999999987665555665543
No 374
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.36 E-value=0.62 Score=51.35 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=52.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-C
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-N 166 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d 166 (417)
-.| ++|+|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+... +
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 358 9999999999999999999998 998888765531 12345566776431 1
Q ss_pred CCc---CCHHhhhccCCeEEEeecc
Q 014863 167 GTL---GDIYETISGSDLVLLLISD 188 (417)
Q Consensus 167 ~~~---~~~~Eav~~ADiViLavpd 188 (417)
..+ .+.++...+.|.||+++--
T Consensus 381 ~~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CccCCcCCHHHHHhcCCEEEEeCCC
Confidence 111 1345666789999998853
No 375
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=92.35 E-value=0.57 Score=47.50 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=50.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCch--hH----HHHHHcC-ceecCCCcCCHHhhhcc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~--s~----~~A~~~G-~~~~d~~~~~~~Eav~~ 178 (417)
.++| +||++||- +++..|++..+... |.++.+...+.-. .. +.+.+.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999996 69999999998887 9988776554311 11 2333444 332 4689999999
Q ss_pred CCeEEEee
Q 014863 179 SDLVLLLI 186 (417)
Q Consensus 179 ADiViLav 186 (417)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999854
No 376
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.33 E-value=0.54 Score=46.61 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcC---CHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~Eav~~ADiViLavp 187 (417)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+.+. +..++++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999999 99988777764332 2212335432111122 34567899999998764
No 377
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.32 E-value=0.5 Score=48.32 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=53.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH-HcCcee--------cCCC--cCCHHhhhcc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR-AAGFTE--------ENGT--LGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~-~~G~~~--------~d~~--~~~~~Eav~~ 178 (417)
+||+|+| .|.+|..+.+.|.+. .. ++....+..+..-+... ..++.. .+-. ..+. +.+.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~------p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH------PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC------CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcC
Confidence 7999998 899999999998765 33 55443233211110010 011100 0000 1233 44578
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 014863 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 179 ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
+|+|++++|.....++.+.+.. .|..+++.+|
T Consensus 77 ~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 77 VDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 9999999999877777655433 4666776665
No 378
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=92.32 E-value=0.44 Score=48.78 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.++.+...+. ...++ .+.+.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999975 8888998888877 98877765432 12222 2334563221 156899999
Q ss_pred ccCCeEEEe
Q 014863 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADiViLa 185 (417)
++||+|..-
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
No 379
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=92.29 E-value=1.6 Score=44.01 Aligned_cols=130 Identities=21% Similarity=0.213 Sum_probs=71.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHHcC----ceecCC-CcCCHHhhhcc
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG-TLGDIYETISG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~d~-~~~~~~Eav~~ 178 (417)
..++. .||.|+|.|+.|.+.|..+.-+ |+ ++.+.+-...+..-++.+.. |...-. .....-.+-++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 34445 8999999999999999998887 65 44444433232222222221 211000 01112245678
Q ss_pred CCeEEEeecchhH------------HHHHHHHHhcC---CCCcEEE-Eeccchh-hhhhccccCCCCCCcEEEeccCCch
Q 014863 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 179 ADiViLavpd~a~------------~~Vl~eI~p~L---k~GaiL~-~a~G~~i-~~~~~~~i~~~~di~VI~v~Pn~pg 241 (417)
+++||+..-..+. .++++.|.|.+ .|++++. .+-.+.+ .|..-+.--+|++ +||..-.|--.
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGcnLDs 167 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGCNLDS 167 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCcCccH
Confidence 9999987753322 34566666654 5777755 4445543 2322212245665 77766665543
Q ss_pred hh
Q 014863 242 PS 243 (417)
Q Consensus 242 ~~ 243 (417)
.-
T Consensus 168 aR 169 (332)
T KOG1495|consen 168 AR 169 (332)
T ss_pred HH
Confidence 33
No 380
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.27 E-value=0.61 Score=46.88 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=40.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCchhHHHHHH----c-----CceecCCCcCCHHhhhccCCeEEE
Q 014863 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-----GFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-----G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
|||.|.+|.++|..|... ++ ++++.+.........+.+ . .... ..+..+.+++||+|++
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~~~~~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKI----RSGDYSDCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEE----ecCCHHHHCCCCEEEE
Confidence 799999999999999887 65 566666543332223222 1 1111 1233578899999999
Q ss_pred eec
Q 014863 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 71 tag 73 (299)
T TIGR01771 71 TAG 73 (299)
T ss_pred CCC
Confidence 764
No 381
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.23 E-value=0.52 Score=47.68 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=54.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.++| |+|.|||-+ ..|..++.-|.+. +.+.+..|.+.... ..+.++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 36889 999999955 8899999998765 00002356554321 1357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEecC
Confidence 9874332 22 23578999988764
No 382
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.12 E-value=0.77 Score=47.77 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=61.9
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| ++|+|+|+ -+-...++..|.+. |.+|.+++..-.. ... ...+. +.+.++++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHH
Confidence 4688 99999998 55777888888888 9998776654222 111 11221 35788999
Q ss_pred ccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEE
Q 014863 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (417)
Q Consensus 177 ~~ADiViLavpd~a~~~-Vl~eI~p~Lk~GaiL~~ 210 (417)
++||+|++++.-....+ -++.+...|++ .+|+|
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999887765 35667776654 35655
No 383
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.12 E-value=0.64 Score=39.51 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=48.3
Q ss_pred cccchHHHHHHHHHhhhhhhcCCceEEEEecCC---chhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecchhHH
Q 014863 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (417)
Q Consensus 118 G~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd~a~~ 192 (417)
|+|++|.+++..|...-.. .+++++...+++ ...+......... ..+.++.+. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 134443333332 1222222222222 568888888 899999999988877
Q ss_pred HHHHHHHhcCCCCcEEE
Q 014863 193 DNYEKIFSCMKPNSILG 209 (417)
Q Consensus 193 ~Vl~eI~p~Lk~GaiL~ 209 (417)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 777654 44566554
No 384
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=92.10 E-value=0.57 Score=48.07 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.++.+..... ....+ .+.+.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999976 7899999988877 98877655432 11222 2334453211 146899999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 385
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.96 E-value=1.1 Score=45.49 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-cCCHHhhhccCCeEEEee
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~Eav~~ADiViLav 186 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++......+..+.+++.|.... +.. .....+.....|+|+-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999988888 88876655554454556667786420 000 001222233579999887
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.... .+++....++++..++..
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEEEe
Confidence 6422 334444556666655533
No 386
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.93 E-value=0.41 Score=50.95 Aligned_cols=70 Identities=26% Similarity=0.275 Sum_probs=47.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh---HHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.+.+ |||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+. -..+-..++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEEE
Confidence 3456 9999999999999999999999 99998887553321 122234555432111 1125677899998
Q ss_pred Ee
Q 014863 184 LL 185 (417)
Q Consensus 184 La 185 (417)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 75
No 387
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=91.80 E-value=0.3 Score=50.09 Aligned_cols=168 Identities=15% Similarity=0.058 Sum_probs=88.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCceEEEEec--CCchhHHHHHHcCceecCCCcCCHHhh-hccCCeEEEee
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s-~~~~~~G~~Vivg~r--~~~~s~~~A~~~G~~~~d~~~~~~~Ea-v~~ADiViLav 186 (417)
.+|+|||. |..|.-+.+-|.++ ++ ..++..... ...+.....- .... +.+.++. ..++|+||+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 79999995 99999999988774 10 124333222 1122222100 0122 2233332 36899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHHHHhhcccccCCCceEEEeec
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ly~~G~e~~G~Gv~~liav~ 266 (417)
|.....++.+++.. .|..|+|.++-- .+.++++ .+-|---..... .++. .+ +|+ .
T Consensus 75 p~~~s~~~~~~~~~---~g~~VIDlS~~f---------Rl~~~vP--~~lPEvn~~~l~-~i~~--------~~-iIA-n 129 (336)
T PRK08040 75 GREASAAYAEEATN---AGCLVIDSSGLF---------ALEPDVP--LVVPEVNPFVLA-DYRN--------RN-IIA-V 129 (336)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECChHh---------cCCCCCc--eEccccCHHHHh-hhcc--------CC-EEE-C
Confidence 99877777776543 588888877631 1111222 444533221111 1111 11 344 5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhcccccccccchHHHHHHHHHHHHH
Q 014863 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (417)
Q Consensus 267 qd~sgea~e~a~al~~aiG~~~~iett~~~E~~~dlfgeqtvL~G~~~a~iea~~~~~v 325 (417)
.++...+.-+++.=+...|.. +. ...+.-...+|++-..++.+.+...
T Consensus 130 PgC~~t~~~laL~PL~~~~~i--------~~---viV~t~qgvSGAG~~~~~~L~~qt~ 177 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGL--------SR---LHVTNLLSASAHGKAAVDALAGQSA 177 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--------eE---EEEEeeccccccChhhHHHHHHHHH
Confidence 666666666665544444432 11 1223335678888777776554443
No 388
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.78 E-value=2 Score=44.11 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=55.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCc--eecCCCcCCHHhhhccCCeEEEeec
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~--~~~d~~~~~~~Eav~~ADiViLavp 187 (417)
++|||+| .|..|.-+.+.|.++ .+.++ +.+.....+.-.+...-.|. ...+ .+ ......+++|+|+.+.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~-~~-~~~~~~~~~Divf~~ag 75 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKKYIEFGGKSIGVPE-DA-ADEFVFSDVDIVFFAAG 75 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCccccccCccccCcc-cc-ccccccccCCEEEEeCc
Confidence 7899998 799999999999886 11222 22322221111111111222 1100 00 12234568999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
.....++.++.. +.|.+|++.++.
T Consensus 76 ~~~s~~~~p~~~---~~G~~VIdnsSa 99 (334)
T COG0136 76 GSVSKEVEPKAA---EAGCVVIDNSSA 99 (334)
T ss_pred hHHHHHHHHHHH---HcCCEEEeCCcc
Confidence 888877777655 468888887764
No 389
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=91.59 E-value=0.68 Score=47.43 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhH----HHHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |+++.+...+. .... +.+.+.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 6788888888777 98877765432 1111 22344563321 157899999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
No 390
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.46 E-value=1 Score=47.09 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=54.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHH----hhhccCCeEEEeec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----Eav~~ADiViLavp 187 (417)
..|-|+|+|.+|..+++.|++. |.++++.+.. . .+.....|.....+...+.+ .-+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d-~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL-G--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc-h--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 4699999999999999999988 8877666543 1 23333344322111122322 13679999999998
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEE
Q 014863 188 DAAQADNYEKIFSCMKPN-SILGL 210 (417)
Q Consensus 188 d~a~~~Vl~eI~p~Lk~G-aiL~~ 210 (417)
++......-.....+.|+ +++.-
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~ 335 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAA 335 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEE
Confidence 876653332222334343 45543
No 391
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.39 E-value=0.58 Score=49.66 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=45.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH---HHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.+.|+||+
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 567 9999999999999999999999 999888774322111 1222222221 1 1123456778999887
Q ss_pred ee
Q 014863 185 LI 186 (417)
Q Consensus 185 av 186 (417)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 54
No 392
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.38 E-value=0.67 Score=45.11 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=26.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|++ .+|.|||+|-+|..++.+|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999998
No 393
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.35 E-value=0.66 Score=48.50 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=46.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHH--cCceecCCCcCC-HHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGD-IYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~~-~~Eav~~ADiVi 183 (417)
+++ ++|.|+|.|..|.+.|+-|++. |.+|.+.+..... ..+..++ .|+... ... .++...+.|+||
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~---~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFY---TGRLKDALDNGFDILA 72 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEE---eCCCCHHHHhCCCEEE
Confidence 457 8999999999999999999999 9988776654322 2222222 366531 112 233456899999
Q ss_pred Eee
Q 014863 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 854
No 394
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.33 E-value=0.54 Score=53.22 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCEEEEEcccchHHHH-HHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 111 INQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 ~kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
|++|.|||+|-.|.+- |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 3579999999999997 9999999 99987766543333344556687642 22234567789998865
No 395
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.32 E-value=0.74 Score=43.89 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=47.6
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH-cCceecCCCcCC----HHhhh-cc
Q 014863 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (417)
Q Consensus 106 ~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~----~~Eav-~~ 178 (417)
+...+ |+|.|+| .|.+|..+++.|.+. |++|++..|...+....... .++......+.+ ..+.+ .+
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45566 9999999 599999999999998 99987776654332111111 123211111222 23445 57
Q ss_pred CCeEEEeecc
Q 014863 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADiViLavpd 188 (417)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 8999988654
No 396
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.11 E-value=0.55 Score=48.65 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=55.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------chhHH---HHHH--
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARA-- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~-------------------~~s~~---~A~~-- 159 (417)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+... ...+
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 578888 9999999999999999999988 76 454444320 01111 1111
Q ss_pred cCce--ecCCCc--CCHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~--~~d~~~--~~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+. .....+ .+..+.++++|+|+-|+-......++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 101111 134567899999999988877776776654
No 397
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=91.03 E-value=0.87 Score=46.74 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhH----HHHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.++.+...+. ..-. +.+.+.|.... ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 7899999988877 98877765432 1112 23444563321 156899999
Q ss_pred ccCCeEEEe
Q 014863 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADiViLa 185 (417)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999875
No 398
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.01 E-value=1.5 Score=43.99 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
.| .+|.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ...+..+.. ..|+||=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 46 899999999999988877765 3 4 356655544 34456666655432 011111111 479999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
........+++....++++-.++..
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7433344566666778887765543
No 399
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=90.92 E-value=0.76 Score=47.10 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhh
Q 014863 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~g~kkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav 176 (417)
.++| .||++||-+ ++..|++..+... |.+|.+...+. ....+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999987 7888888888777 88877665432 11122 2334564321 146889999
Q ss_pred ccCCeEEEee
Q 014863 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADiViLav 186 (417)
++||+|..-+
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 400
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.85 E-value=0.84 Score=50.41 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=50.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-NG 167 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d~ 167 (417)
.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+.+.+.|+... +.
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999999 999888765421 12345566776431 11
Q ss_pred Cc---CCHHhhhccCCeEEEeec
Q 014863 168 TL---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 168 ~~---~~~~Eav~~ADiViLavp 187 (417)
.+ .+.++...+.|.||+++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 11 134455568999999874
No 401
>PRK06392 homoserine dehydrogenase; Provisional
Probab=90.85 E-value=0.55 Score=47.94 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=51.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh--hhcCCceEEE-EecCCc----h-----hHHHHHHcC-ceecCCCcCCHHhhh-c
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVKV-GLRKGS----R-----SFAEARAAG-FTEENGTLGDIYETI-S 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~--~~~~G~~Viv-g~r~~~----~-----s~~~A~~~G-~~~~d~~~~~~~Eav-~ 177 (417)
+||+|||+|++|..+++.|.+.-+ ..+.+++|+. .+++.. . .+....+.| +...+....+.++.+ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 489999999999999999977311 1122455432 333211 0 111111112 110000011344443 4
Q ss_pred cCCeEEEeecchhH-HHHHHHHHhcCCCCcEEEEe
Q 014863 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADiViLavpd~a~-~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++|+||=|+|.... ...+.-+.+.|+.|..|+.+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 68999999974321 12344455566777766533
No 402
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=90.77 E-value=0.61 Score=47.86 Aligned_cols=64 Identities=22% Similarity=0.168 Sum_probs=42.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhHHHHHHcCceecCCCcCC---HHhhhccCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~---~~Eav~~ADiViL 184 (417)
|++|+|||.|..|.-+++.+++. |++|++.+... ...... .+..... ...| +.+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~~--ad~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQV--ADEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhHh--CceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 58999999999999999999998 99987766542 222222 2222210 1223 4457788898753
No 403
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.50 E-value=0.6 Score=48.47 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=44.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHH----HHH-HcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
||.|||+|-.|.++|+-|++. |++|.+.+........ ..+ ..|+... .....+.+.++|+||...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEECC
Confidence 589999999999999999999 9998777654332111 122 2476541 112245678899888754
No 404
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=90.50 E-value=0.39 Score=49.80 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=42.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecC-CCcCCHHhhhccCCeEEE
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d-~~~~~~~Eav~~ADiViL 184 (417)
|++|||||-|..|.=|+..-+.- |+++++.+.. +.+-....+......+ +....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 48999999999999999988887 9998775532 2222222222222100 001135678889998864
No 405
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.26 E-value=2.4 Score=43.84 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=63.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCc-CCHHhhh------ccCC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~Eav------~~AD 180 (417)
..| .+|.|.|.|.+|...++-++.. |.++++..+.+....+.+++.|+...+... .+..+.+ ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 346 8999999999999999988888 887655544445678889998874211100 1222222 2479
Q ss_pred eEEEeecchhH-----------HHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~-----------~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++-.... ...+++....+++|-.|++.
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 99998875421 23555556677777666544
No 406
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.24 E-value=0.77 Score=47.37 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=55.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHh-hhhhhcCCce---EEEEe--cCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 014863 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~-s~~~~~~G~~---Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViL 184 (417)
.||||||. |..|..+.+-|.+ . .+. +.... +...+....... ..... -.+.+ ...+.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999995 9999999998874 4 443 32222 222222211111 11210 12333 4578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
++|.....++.++.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777776653 468888887764
No 407
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.22 E-value=0.45 Score=41.56 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r 148 (417)
+||.|||+|.+|..++++|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7999999999999999999999 87 5555553
No 408
>PLN02342 ornithine carbamoyltransferase
Probab=90.21 E-value=1.1 Score=46.20 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcC---ceecCCCcCCHHhhhcc
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G---~~~~d~~~~~~~Eav~~ 178 (417)
.++| .||++||-+ ++..+++..+... |.++.+..... ....+.+++.| +.. ..+++|++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 5788 999999964 6888888888777 88877665432 22344455545 332 5688999999
Q ss_pred CCeEEEee
Q 014863 179 SDLVLLLI 186 (417)
Q Consensus 179 ADiViLav 186 (417)
||+|...+
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999864
No 409
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=90.12 E-value=1.1 Score=46.91 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=49.4
Q ss_pred cccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCc
Q 014863 106 DAFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL 169 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-----G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~ 169 (417)
+.++| +||+|+|- | ++..|++..+... |++|.+...++ +...+. +.+.|.... ..
T Consensus 183 ~~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~ 253 (395)
T PRK07200 183 ENLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QV 253 (395)
T ss_pred cccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 34788 89999985 4 5678888888777 88887765442 222233 444563221 14
Q ss_pred CCHHhhhccCCeEEEee
Q 014863 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~~~~Eav~~ADiViLav 186 (417)
.+++|++++||+|..-+
T Consensus 254 ~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 254 NSMEEAFKDADIVYPKS 270 (395)
T ss_pred cCHHHHhCCCCEEEEcC
Confidence 68999999999999874
No 410
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.09 E-value=1.3 Score=42.93 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH----cCceecCCCcCCHHhhhccCCeEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
..| ++|.-||+|+ | .++..++.. |...+++.+.++...+.|++ .++.. .....+.-...|+|+
T Consensus 118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vv 184 (250)
T PRK00517 118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIV 184 (250)
T ss_pred CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEE
Confidence 356 8999999999 5 344455555 65435677766655555544 33310 000000001479988
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
.-........+++++...|+||..++++
T Consensus 185 ani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 185 ANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7665555667888899999999887754
No 411
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.00 E-value=1.1 Score=45.24 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=53.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
.++| |++.|||-+ ..|..+|.-|.+... ..+..|.+.... ..++++.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~aTVtvchs~-------------------T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 154 DTEG-ADVVVVGRSDIVGKPMANLLIQKAD--GGNATVTVCHSR-------------------TDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHhcCcc--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5899 999999965 789999998865400 002356554321 23567889999999998
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
+--.. ++. ..++|+|++|++++
T Consensus 212 vGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 212 AGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEcc
Confidence 86432 222 24578999988764
No 412
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=89.97 E-value=0.59 Score=46.89 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcC-CceEEEEecCCchhHHHHHHcC-----ceecCCCcCCHHhhhccCCeEEEee
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
-..|+|.|.|+..+...-... .+ =.+|.+++|....+.+.|.... +..+-....+.+++++.+|+|+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 478999999999887765543 11 1278899999887777776321 1111112456889999999999998
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchhh
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~ 217 (417)
+...- ++ ....++||+.|-.+++|+.+
T Consensus 216 lsteP--il--fgewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEP--IL--FGEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCc--ee--eeeeecCCceEeeeccCCch
Confidence 84211 11 12457899989899988643
No 413
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.81 E-value=0.65 Score=47.48 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.8
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCce---EEEEecC--CchhHHHHHHcCceecCCCcCCH-HhhhccCCeEEEe
Q 014863 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~---Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~-~Eav~~ADiViLa 185 (417)
||+||| .|..|..+.+-|.+. ++. +.+..+. ..+... -.|... .+.+. .+.+.++|+||+|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999998876 553 2222222 122222 112111 01111 2445899999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99998888776653 457777777763
No 414
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.78 E-value=0.85 Score=47.82 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.8
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 014863 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLa 185 (417)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99987766543333344455677641 11223456789998874
No 415
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.74 E-value=0.45 Score=48.70 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 111 ~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
|++|.|||.|.+|.+.|..|.+. |.+|++..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 57999999999999999999998 99998887753
No 416
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=89.68 E-value=1.1 Score=45.86 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=53.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC-CchhHHHHHHcCce---------ec------CC---CcC---
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NG---TLG--- 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~------d~---~~~--- 170 (417)
||||+|+|.+|+.+.+.|.+. ..+.+++|+..++. +.+......+++-+ .+ ++ .+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 699999999999999998765 00013565444442 23333333333210 00 00 011
Q ss_pred CHHhh---hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 014863 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ~~~Ea---v~~ADiViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~ 212 (417)
++++. -.++|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 23321 1479999999999877766544 455676655443
No 417
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.62 E-value=5.3 Score=37.37 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| ++|.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999995 89999999999988 99887766653
No 418
>PRK08223 hypothetical protein; Validated
Probab=89.59 E-value=1.6 Score=43.89 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 477888 9999999999999999999998
No 419
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=89.41 E-value=2.6 Score=43.17 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=58.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC---HHhhhccCCeEEE
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~Eav~~ADiViL 184 (417)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|.... + ..+ ..+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 57 8999999999999999988888 88876665554444667777886421 0 011 1222345799999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.... .+.+....++++-.++..
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEEEE
Confidence 886432 233334455565555433
No 420
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.19 E-value=1.3 Score=46.05 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+.|+. .+|.|||+|-.|..++++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
No 421
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=89.12 E-value=1.3 Score=44.70 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc----hhHHH-HHHcCceecCCCcCCHHhhhccCC
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~----~s~~~-A~~~G~~~~d~~~~~~~Eav~~AD 180 (417)
.++| .||++||- ++...|++..+... |.+|.+.....- ...+. +++.|.... ...+++++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4788 89999997 78999999998887 988777654321 11222 555674321 1468899999999
Q ss_pred eEEEe
Q 014863 181 LVLLL 185 (417)
Q Consensus 181 iViLa 185 (417)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
No 422
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=89.08 E-value=3 Score=41.09 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=62.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCHHhhhc---cCC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~Eav~---~AD 180 (417)
|.| ++|.=|||| |+.++.-|.+. |.+| .|.+-.++..+.|+ +.|+.. +-...+.+|... .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 788 999999998 56777788777 8876 56776666666555 455552 222345666654 578
Q ss_pred eEEEe-----ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLa-----vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+.. +|+.. .++..+...+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEe
Confidence 87653 44433 3777888899999887665
No 423
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=89.00 E-value=1.8 Score=47.87 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=50.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eE--EEEecCCc------hhHHHHHHc--Cce--ecCC-CcCCHHh
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GFT--EENG-TLGDIYE 174 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~V--ivg~r~~~------~s~~~A~~~--G~~--~~d~-~~~~~~E 174 (417)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++. ..+. ...+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999998 86 22 22232211 234555552 211 1011 1345778
Q ss_pred hhccCCeEEEeecchhHHH
Q 014863 175 TISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~ 193 (417)
.++..|+|++.+-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999888655543
No 424
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.98 E-value=1.1 Score=46.76 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=44.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCch-hHHHHHH--cCceecCCCcC-CHHhhhccCCeEEEee
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLG-DIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~-~~~Eav~~ADiViLav 186 (417)
-.|.|||+|-.|.++|+-|++. |++|.+.+..... ..+..++ .|+... .. ...+.+.++|+||..-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~---~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELR---CGGFDCELLVQASEIIISP 76 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEE---eCCCChHHhcCCCEEEECC
Confidence 4799999999999999999999 9988776654322 2222333 366531 11 1245567899887643
No 425
>PLN02527 aspartate carbamoyltransferase
Probab=88.85 E-value=1.5 Score=44.49 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| .||++||-+ ++..+++..+.... |+++.+...+. ....+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 4788 999999976 57899988876531 67776655432 233455555565321 146899999999
Q ss_pred CeEEEe
Q 014863 180 DLVLLL 185 (417)
Q Consensus 180 DiViLa 185 (417)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999983
No 426
>PRK10637 cysG siroheme synthase; Provisional
Probab=88.82 E-value=2.3 Score=45.15 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=53.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~Eav~~ADiViL 184 (417)
-.|+| ++|.|||.|..+..=++.|.+. |.+|.|....-.+......+.| +....+.. . .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEEE
Confidence 57899 9999999999999999999998 8877665433222233222333 22211111 2 244789999999
Q ss_pred eecchhHHH
Q 014863 185 LISDAAQAD 193 (417)
Q Consensus 185 avpd~a~~~ 193 (417)
||.|...-+
T Consensus 79 at~d~~~n~ 87 (457)
T PRK10637 79 ATDDDAVNQ 87 (457)
T ss_pred CCCCHHHhH
Confidence 999987754
No 427
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.77 E-value=2.9 Score=39.58 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=30.0
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| |++.|+| .|-+|.++++.|.+. |.+|++..+..
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~ 41 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSA 41 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 9999999 489999999999998 99887765543
No 428
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.76 E-value=0.94 Score=43.90 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=55.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh-----hccCCeE
Q 014863 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea-----v~~ADiV 182 (417)
.|++|||.||+|.-+.-.+.++ | ..+.+|.++.+.-+.+|.+.|+.... .-.+-+ .++-|+|
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~tt~---egv~~ll~~p~~~di~lv 75 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVATTH---EGVIGLLNMPEFADIDLV 75 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcchh---hHHHHHHhCCCCCCcceE
Confidence 5899999999999887776665 4 25778889888888888888886311 111111 2455699
Q ss_pred EEeecchhHHHHHHHH
Q 014863 183 LLLISDAAQADNYEKI 198 (417)
Q Consensus 183 iLavpd~a~~~Vl~eI 198 (417)
|=+++..++.+-...+
T Consensus 76 fdatsa~~h~~~a~~~ 91 (310)
T COG4569 76 FDATSAGAHVKNAAAL 91 (310)
T ss_pred EeccccchhhcchHhH
Confidence 9999988887644433
No 429
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.75 E-value=2.5 Score=43.70 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=55.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC-----H----Hhhhc-c
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-----I----YETIS-G 178 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-----~----~Eav~-~ 178 (417)
.| .+++|+|+|-+|.|-.++++.. |-..+++.+.+....+.|++.|.+.. +.+ + .+... .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 44 7899999999999999999998 88777888887888999999998741 222 1 12233 7
Q ss_pred CCeEEEeecchh
Q 014863 179 SDLVLLLISDAA 190 (417)
Q Consensus 179 ADiViLavpd~a 190 (417)
+|.+|-++-...
T Consensus 255 ~d~~~e~~G~~~ 266 (366)
T COG1062 255 ADYAFECVGNVE 266 (366)
T ss_pred CCEEEEccCCHH
Confidence 889988887544
No 430
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.72 E-value=5.4 Score=37.05 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhh-----hccCCe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Ea-----v~~ADi 181 (417)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. ....+.+.+.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 456 8999999999999999888887 8887665554 344556666664320 1001112222 246899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+.+++.. ..+..+...++++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99988863 2333444555565555543
No 431
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=88.64 E-value=1.7 Score=45.03 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCc
Q 014863 106 DAFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL 169 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G--------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~ 169 (417)
+.++| +||+|+|.| ++..|++..+... |++|.+...+. +...+. +.+.|.... ..
T Consensus 166 ~~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~ 236 (357)
T TIGR03316 166 ENLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IV 236 (357)
T ss_pred cccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 34788 999999853 4457788877776 98887765442 222233 334564321 14
Q ss_pred CCHHhhhccCCeEEEee
Q 014863 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~~~~Eav~~ADiViLav 186 (417)
.+++|++++||+|..-.
T Consensus 237 ~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 237 NSMDEAFKDADIVYPKS 253 (357)
T ss_pred cCHHHHhCCCCEEEECC
Confidence 68999999999999874
No 432
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=88.62 E-value=1.1 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 014863 113 QIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s 133 (417)
||.|||+|-.|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999988
No 433
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.50 E-value=1.4 Score=46.34 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=56.6
Q ss_pred cCCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHc--CceecCCCcCCHHhh
Q 014863 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (417)
Q Consensus 108 l~g~kkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~Ea 175 (417)
|+| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... +... ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 3345566666666 9998776543 22333322 2332 5789999
Q ss_pred hccCCeEEEeecchhHHHHH-HHHHhcCCCCcEEE
Q 014863 176 ISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILG 209 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~Vl-~eI~p~Lk~GaiL~ 209 (417)
+++||.+++++-.+...++= +.+ .|+. .+|+
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~--~m~~-~~v~ 405 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKL--LMKT-PVVI 405 (414)
T ss_pred HhhCCEEEEeccHHHHhccChhhh--hccC-CEEE
Confidence 99999999999988877643 334 4543 3444
No 434
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.44 E-value=1.4 Score=45.86 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=44.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh-HHHHHHcCceecCCCcCCHHhhhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~Eav~~ADiViLav 186 (417)
+.+ ++|.|||+|-.|.+.++-|++. |.+|.+.+...... .+. .+.|+.... -....+.+++.|+||..-
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~--~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHT--GSLNDEWLLAADLIVASP 73 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEe--CCCCHHHhcCCCEEEECC
Confidence 346 8999999999999999988888 99887665433221 222 233765310 012334567789766543
No 435
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.41 E-value=2 Score=47.54 Aligned_cols=74 Identities=24% Similarity=0.204 Sum_probs=50.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceecC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d 166 (417)
.-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-
T Consensus 190 ~~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~ 262 (652)
T PRK12814 190 PKSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRF 262 (652)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 3457 8999999999999999999998 998887765421 113445566765321
Q ss_pred CCc----CCHHhhhccCCeEEEeec
Q 014863 167 GTL----GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~~----~~~~Eav~~ADiViLavp 187 (417)
.+. .+.++.....|.||+++-
T Consensus 263 ~~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 263 NTVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CCcccCccCHHHHHhhcCEEEEEcC
Confidence 111 123444456999999885
No 436
>PRK06182 short chain dehydrogenase; Validated
Probab=88.36 E-value=3.5 Score=39.45 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH---Hhhhc-------
Q 014863 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (417)
Q Consensus 109 ~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~Eav~------- 177 (417)
++ ++|.|.|. |-+|.++++.|.+. |++|++..|..++ .+.....++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45 89999995 89999999999988 9988777665433 3333333432111112333 23333
Q ss_pred cCCeEEEeec
Q 014863 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADiViLavp 187 (417)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799998764
No 437
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=88.33 E-value=1.9 Score=44.35 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| .||++||= +++..+++..|...+ |.++.+....+ ....+.+++.|...+ .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5789 99999997 588999888765331 77776655432 233455555564321 146889999999
Q ss_pred CeEEEe
Q 014863 180 DLVLLL 185 (417)
Q Consensus 180 DiViLa 185 (417)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 438
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.32 E-value=1.8 Score=43.48 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~ 147 (417)
.+.|+. .+|.|||+|-.|..+|+||..+ |+ ++.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 356677 8999999999999999999998 87 455544
No 439
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=88.32 E-value=1.7 Score=39.40 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=49.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCH---HhhhccCCeEEEeecch
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~Eav~~ADiViLavpd~ 189 (417)
++.|+|.|..|..++..|++. |++++-..+.+..... ..-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~~-~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQG-TSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCccccC-cccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 9987766655432111 11245543 2333 33344568899999754
Q ss_pred hH-HHHHHHHHh
Q 014863 190 AQ-ADNYEKIFS 200 (417)
Q Consensus 190 a~-~~Vl~eI~p 200 (417)
.. .++++.+..
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 44 456555543
No 440
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.30 E-value=5.5 Score=36.93 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=31.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
++| ++|.|.|. |.+|.++++.|++. |.+|++..|+..
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999996 67999999999998 999888777644
No 441
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.27 E-value=4.1 Score=38.79 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=56.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceecCCCcCCHHhh--hccCCeEEE
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea--v~~ADiViL 184 (417)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |++. +.+.+..+.+.+.|.. +.......+. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~-~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGV-DPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-CCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999998888887 877 6544 4434456687877721 1111111111 135899998
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 876432 344455566666655544
No 442
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.15 E-value=4.5 Score=40.63 Aligned_cols=92 Identities=23% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceec-CCCcCCHHh----hh--ccCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E----av--~~AD 180 (417)
.| ++|.|+|.|.+|...++-++.. |.+ |++. +.+.+..+.+++.|.... +..-.+..+ .. ...|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~-~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAV-DIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999988888 885 5444 444556778888886310 101112222 22 2479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
+|+-++... ..++.....++++-.++..
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 999888642 2233334456666665544
No 443
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.10 E-value=3.8 Score=40.45 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=56.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceec-CCCcCCHH---hhhc--cCC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~---Eav~--~AD 180 (417)
..| .+|.|+|.|.+|...++-++.. |.+ |++..+ +.+..+.+++.|.... +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~-~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDP-SPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 347 8999999999999999988888 887 665444 3455677788886320 10001111 2222 579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|+-++..... +......++++..++.
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVL 260 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEE
Confidence 99988876543 2233344555555543
No 444
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.05 E-value=1.8 Score=45.75 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceecC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d 166 (417)
.-.+ ++|+|||.|..|.+.|..|++. |++|++..+.+. ...+.+.+.|+...-
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3467 8999999999999999999998 998887765321 112445666765321
Q ss_pred CC-c---CCHHhhhccCCeEEEeec
Q 014863 167 GT-L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~-~---~~~~Eav~~ADiViLavp 187 (417)
++ + .+..+.....|.||+++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 213 NVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred CCEECCcCCHHHHHhhCCEEEEecC
Confidence 11 1 123444457899999874
No 445
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=87.98 E-value=2 Score=45.68 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHHHHcCceecCCCcCCHHhhhccC
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~Eav~~A 179 (417)
.++| +||++||- +++..|++..+...+ |+++.+...+. ....+.+.+.|.... ...+++|++++|
T Consensus 238 ~l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGA 309 (429)
T ss_pred CcCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCC
Confidence 3789 99999998 489999998875521 77776654432 223345555564321 146889999999
Q ss_pred CeEEEee
Q 014863 180 DLVLLLI 186 (417)
Q Consensus 180 DiViLav 186 (417)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9999844
No 446
>PRK07411 hypothetical protein; Validated
Probab=87.91 E-value=3.1 Score=43.34 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=54.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecC--C-----------------chhHHHHH---H--
Q 014863 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEAR---A-- 159 (417)
Q Consensus 105 ~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~--~-----------------~~s~~~A~---~-- 159 (417)
.+.|+. .+|.|||+|-.|..++++|..+ |+ ++.+.+.. + .+....++ +
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 568888 9999999999999999999998 76 33333321 0 01111111 1
Q ss_pred cCceec--CCCcC--CHHhhhccCCeEEEeecchhHHHHHHHHH
Q 014863 160 AGFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~G~~~~--d~~~~--~~~Eav~~ADiViLavpd~a~~~Vl~eI~ 199 (417)
..+..+ ...+. +..+.+.++|+||.|+=+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111110 11111 23467899999999988777766776644
No 447
>PRK06057 short chain dehydrogenase; Provisional
Probab=87.90 E-value=3.1 Score=39.32 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.++| ++|.|+|. |-+|.++++.|.+. |++|++..|+
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4778 99999997 89999999999998 9988776664
No 448
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=87.80 E-value=4 Score=41.18 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCC-cCCHHhhhccCCeEEEee
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~Eav~~ADiViLav 186 (417)
.| .++.|+|.|.+|...++-++.. |.++++..+.+.+....+++.|.... +.. .....+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 57 8999999999999999988888 88776666554443344455776320 000 001122233579999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
... ..++.....++++..++..
T Consensus 253 g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Cch---HHHHHHHHHhccCCEEEEE
Confidence 743 2333444556666665543
No 449
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.79 E-value=3.1 Score=41.63 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCce
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. .+..+.+++.|..
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDID-PEKLEMMKGFGAD 212 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCc
Confidence 46 8999999999999999999888 8877655444 4456788888863
No 450
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=87.79 E-value=1.8 Score=43.77 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHH----HHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.++| .||++||- ++...|++..+... |.+|.+...+. ....+. +.+.|.... ...+.+++++
T Consensus 145 ~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~ 215 (304)
T TIGR00658 145 KLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVK 215 (304)
T ss_pred CCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhC
Confidence 3788 99999996 68889999888877 88877765332 111222 344553211 1468899999
Q ss_pred cCCeEEEe
Q 014863 178 GSDLVLLL 185 (417)
Q Consensus 178 ~ADiViLa 185 (417)
+||+|...
T Consensus 216 ~aDvvy~~ 223 (304)
T TIGR00658 216 GADVIYTD 223 (304)
T ss_pred CCCEEEEc
Confidence 99999985
No 451
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.68 E-value=4.4 Score=41.01 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=54.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc-----cCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~-----~ADi 181 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++.. .++...+.+++.|.... +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~-~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVD-LNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEc-CCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 56 8999999999999999988888 88 465444 44555778888886321 100011112221 4799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+-++.... .+......++++..++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 998886322 2333333455555544
No 452
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.60 E-value=1.8 Score=45.31 Aligned_cols=67 Identities=28% Similarity=0.298 Sum_probs=43.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhH----HHHHHcCceecCCCcCC---HHhhhccCCeEEEe
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~---~~Eav~~ADiViLa 185 (417)
||.|||.|..|.+.|+.|++. |+.|.+.++...... ...++.|+...-+...+ ..+...+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 799999999999999999999 999877765533212 22345576531000011 11356789998884
No 453
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.59 E-value=2.5 Score=45.08 Aligned_cols=74 Identities=27% Similarity=0.286 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceecC
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d 166 (417)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3457 8999999999999999999998 988877754321 112444556765321
Q ss_pred CC-cC---CHHhhhccCCeEEEeec
Q 014863 167 GT-LG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~-~~---~~~Eav~~ADiViLavp 187 (417)
+. +. +.++.....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~VilAtG 237 (485)
T TIGR01317 213 NTEIGVDISADELKEQFDAVVLAGG 237 (485)
T ss_pred CCEeCCccCHHHHHhhCCEEEEccC
Confidence 11 11 23344456899999885
No 454
>PRK01581 speE spermidine synthase; Validated
Probab=87.52 E-value=4 Score=42.64 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=68.1
Q ss_pred hHhhhhhcccchhhhccCcccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH
Q 014863 80 KKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (417)
Q Consensus 80 ~~~~~~~~~~~e~~~~~g~~~f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (417)
-.-.++|...+|.++-+.=- ........+-++|.|||+| .|..+...|+.. +..-++..+.++...+.|+.
T Consensus 122 LDG~~Q~se~DE~iYHE~Lv--hp~m~~h~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 122 LDKQLQFSSVDEQIYHEALV--HPIMSKVIDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred ECCeeccccccHHHHHHHHH--HHHHHhCCCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHh
Confidence 33445677777766541100 0001112223899999998 455554445433 33334455566666777775
Q ss_pred c---------CceecCCC----cCCHHhhh----ccCCeEEEeecchhH--------HHHHHHHHhcCCCCcEEEEecc
Q 014863 160 A---------GFTEENGT----LGDIYETI----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 160 ~---------G~~~~d~~----~~~~~Eav----~~ADiViLavpd~a~--------~~Vl~eI~p~Lk~GaiL~~a~G 213 (417)
. ++. +.. ..|..+.+ ..-|+||+=.|+... .+.++.+...|+||-+++.-++
T Consensus 193 ~~~L~~~~~~~~~--DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 193 VPELVSLNKSAFF--DNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccccchhccccCC--CCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 2 111 000 23333332 346999999876422 4577789999999998765443
No 455
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.49 E-value=3.5 Score=41.02 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHh---hh--ccCC-e
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE---TI--SGSD-L 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E---av--~~AD-i 181 (417)
.| ++|.|.|.|.+|...++-++.. |.++++.........+.+++.|.... +..-.+.++ .. ...| +
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 57 8999999999999999988888 88644444444445667777775310 100011111 11 1346 7
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
|+-++.... .+.+....+++|-.++..
T Consensus 233 v~d~~G~~~---~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGVPQ---TVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 777777432 333333445555555433
No 456
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=87.48 E-value=7.4 Score=32.12 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=54.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHH----HcCceecCCCcCCH----HhhhccCC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDI----YETISGSD 180 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~----~Eav~~AD 180 (417)
.+ ++|.-||+|.= .++..+.+.. .+.++ ++.+.+....+.++ ..+.....-...+. .......|
T Consensus 19 ~~-~~vldlG~G~G--~~~~~l~~~~----~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSG--SITIEAARLV----PNGRV-YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCC--HHHHHHHHHC----CCceE-EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 78999999983 3333343330 02244 56665554444433 23321000001121 12235799
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 iViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+|++.-++....++++.+...|++|..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999887653
No 457
>PRK13984 putative oxidoreductase; Provisional
Probab=87.17 E-value=2.3 Score=46.35 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------hhHHHHHHcCceec-CC
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE-NG 167 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~-d~ 167 (417)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.+. +..+...+.|+... +.
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 998877654321 12345566676431 11
Q ss_pred Cc---CCHHhhhccCCeEEEeec
Q 014863 168 TL---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 168 ~~---~~~~Eav~~ADiViLavp 187 (417)
.+ .+.++.....|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 11 123444457999999996
No 458
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=87.16 E-value=3.8 Score=40.88 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=91.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC-chhH----HHH---HHcCceecCCCcCCHHhhhccCCe
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~-~~s~----~~A---~~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
|+||+|+|+ |-||..+.+.+... .++++.....+. +.+. ..+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 489999997 99999999999876 145655554432 2111 111 1123332 2345677889999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhH--HHHHhhcccccC-CC
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AG 258 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~v--r~ly~~G~e~~G-~G 258 (417)
+|=-+-|....+.++-...+= -.+|+=..||+-..++. .....+.+. +.++||..--+. -.+-++--...+ +-
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~-l~~~a~~v~-vv~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEK-LREAAEKVP-VVIAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHH-HHHHHhhCC-EEEeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988888886544331 22566678887333221 001122333 457888764431 011010000011 22
Q ss_pred ceEEEeecC-----CCCHHHHHHHHHHHHHhC
Q 014863 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (417)
Q Consensus 259 v~~liav~q-----d~sgea~e~a~al~~aiG 285 (417)
+- +|-.|. -+||.|+.+++.+.++.|
T Consensus 149 iE-IiE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IE-IIEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EE-ehhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 22 222232 367899999999999998
No 459
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.09 E-value=0.81 Score=44.26 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.6
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCC---HHhhh------cc-CCe
Q 014863 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~Eav------~~-ADi 181 (417)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........+ +.+++ .. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 5889996 99999999999998 999988888644221 1122110011222 33455 45 899
Q ss_pred EEEeecc
Q 014863 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
No 460
>PRK07825 short chain dehydrogenase; Provisional
Probab=87.08 E-value=3.4 Score=39.46 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| ++|.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 567 89999995 78999999999998 99988776653
No 461
>PRK09242 tropinone reductase; Provisional
Probab=86.90 E-value=2.5 Score=39.96 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| |++.|+|. |.+|.++++.|.+. |.+|++..|..
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 567 99999995 79999999999998 99988777653
No 462
>PLN02214 cinnamoyl-CoA reductase
Probab=86.78 E-value=2.3 Score=42.75 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHH-HH--Hc---CceecCCCcC---CHHhh
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR--AA---GFTEENGTLG---DIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~-A~--~~---G~~~~d~~~~---~~~Ea 175 (417)
..+++ ++|.|.|. |-+|..+++.|.+. |++|++..|........ .. .. .+......+. +..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 34567 99999997 99999999999999 99887766653321111 01 11 1111001122 34567
Q ss_pred hccCCeEEEeecc
Q 014863 176 ISGSDLVLLLISD 188 (417)
Q Consensus 176 v~~ADiViLavpd 188 (417)
++++|+||.+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8899999988753
No 463
>PRK09414 glutamate dehydrogenase; Provisional
Probab=86.78 E-value=1.7 Score=46.41 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r 148 (417)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 46899 9999999999999999999888 988765534
No 464
>PLN02477 glutamate dehydrogenase
Probab=86.76 E-value=1.3 Score=46.77 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi 144 (417)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47899 9999999999999999999998 98876
No 465
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=86.60 E-value=2.7 Score=43.23 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHHHH----HHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~d~~~~~~~Eav~ 177 (417)
.++| .||++||- .++..|++..+... |.+|.+...+. ..-.+.+ ...|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 5788 99999997 57888888888777 88877765432 1222332 33453221 1468899999
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999833
No 466
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=86.56 E-value=4 Score=43.09 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=63.0
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhh
Q 014863 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (417)
Q Consensus 106 ~~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Ea 175 (417)
+.++| +||+|.|+ .+-+..++..|++. |.+|.+++..-. ..+.....|... + + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCccc----c-h-hhh
Confidence 34788 99999998 57788899999888 998877654311 111212334331 1 1 235
Q ss_pred hccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 014863 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 v~~ADiViLavpd~a~~~V-l~eI~p~Lk~GaiL~~a~G~ 214 (417)
+++||.|+++|.-....++ ++.+...++...+|+|.-++
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 7789999999998777643 55666666644577776554
No 467
>PLN02661 Putative thiazole synthesis
Probab=86.54 E-value=1 Score=46.72 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=41.4
Q ss_pred hhhcccchhhhccCccc--ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 84 ISLADRDEYIVRGGRDL--FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 84 ~~~~~~~e~~~~~g~~~--f~~~~~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.+|+.-+|..+.+.-|. |.+. ..... ..|.|||.|..|...|..|.+. .|++|.+..+.
T Consensus 65 ~~f~~~~e~~is~~i~~~~~~~l-~~~~~-~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~ 125 (357)
T PLN02661 65 FKFAPIKESIVSREMTRRYMTDM-ITYAD-TDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQS 125 (357)
T ss_pred ccceechhhHhhccchHhHhhhh-hhccc-CCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecC
Confidence 46777788777766552 3333 33334 5799999999999999999753 16777776654
No 468
>PRK07831 short chain dehydrogenase; Provisional
Probab=86.50 E-value=3.3 Score=39.35 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.4
Q ss_pred cccccCCCCEEEEEcc-c-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 104 LPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 104 ~~~~l~g~kkIgIIG~-G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
....++| +++.|.|. | -+|.++++.|.+. |.+|++..+.
T Consensus 11 ~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~ 51 (262)
T PRK07831 11 GHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIH 51 (262)
T ss_pred cccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3456778 99999997 6 5999999999998 9988776664
No 469
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=86.41 E-value=1.9 Score=45.44 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
.|+| ++|+|=|+||.|...|+-|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999988 998877766543
No 470
>PRK07060 short chain dehydrogenase; Provisional
Probab=86.37 E-value=3.1 Score=38.68 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
.++| ++|.|.|. |.+|..+++.|.+. |++|++..|..+
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~ 44 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAA 44 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3677 99999997 79999999999998 998877766533
No 471
>PLN02740 Alcohol dehydrogenase-like
Probab=86.30 E-value=4.5 Score=41.21 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=48.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----c
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----G 178 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~ 178 (417)
-.| .+|.|+|.|.+|...++-++.. |. +|++..+ +....+.+++.|.... +... .+..+.+. .
T Consensus 197 ~~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~~~-~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 197 QAG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGVDI-NPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEEcC-ChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCC
Confidence 356 8999999999999999998888 88 4654444 4556788888886320 1000 01222221 4
Q ss_pred CCeEEEeecc
Q 014863 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADiViLavpd 188 (417)
.|+|+-++-.
T Consensus 269 ~dvvid~~G~ 278 (381)
T PLN02740 269 VDYSFECAGN 278 (381)
T ss_pred CCEEEECCCC
Confidence 7888888874
No 472
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=86.14 E-value=4.7 Score=39.40 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=57.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHh-hhccCCeEEEee
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLI 186 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E-av~~ADiViLav 186 (417)
.+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+.+.|... ..+..+ .-+..|+++.++
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~ 233 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFA 233 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcC
Confidence 356 7999999999999999888887 88876665553 4456667777632 111111 223578888876
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 014863 187 SDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 187 pd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
+.. ..++++...++++..++.
T Consensus 234 ~~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 234 PVG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred CcH---HHHHHHHHHhhcCCEEEE
Confidence 543 345566666766666553
No 473
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=86.06 E-value=4.1 Score=40.34 Aligned_cols=93 Identities=20% Similarity=0.238 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCC-HHhhhccCCeEEEe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLL 185 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~-~~Eav~~ADiViLa 185 (417)
-+| .+|.|.|.|.+|.+.++-++.. |.++++..+. .+..+.+.+.|.... +..-.+ ..+.-...|+|+-+
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~ 239 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDT 239 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEEC
Confidence 356 8999999999999999888888 8877665554 344666677775320 000001 11223567999998
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 014863 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~a~~~Vl~eI~p~Lk~GaiL~~a 211 (417)
++... .+.+....++++..++..
T Consensus 240 ~g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 240 VSASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCCcc---hHHHHHHHhcCCCEEEEE
Confidence 88652 234444556555555433
No 474
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=85.93 E-value=2.7 Score=41.06 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchh--HHHHHH-cC----ceecCCCc---CCHHhhhcc
Q 014863 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG----FTEENGTL---GDIYETISG 178 (417)
Q Consensus 110 g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s--~~~A~~-~G----~~~~d~~~---~~~~Eav~~ 178 (417)
| ++|.|.| .|-+|..+++.|.+. |++|++..|..... ...... .+ +......+ ....+++++
T Consensus 4 ~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (322)
T PLN02662 4 G-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDG 76 (322)
T ss_pred C-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcC
Confidence 5 8999999 699999999999999 99887666653321 111111 11 11000111 235567888
Q ss_pred CCeEEEeec
Q 014863 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADiViLavp 187 (417)
+|.||.+..
T Consensus 77 ~d~Vih~A~ 85 (322)
T PLN02662 77 CEGVFHTAS 85 (322)
T ss_pred CCEEEEeCC
Confidence 999988764
No 475
>PRK05717 oxidoreductase; Validated
Probab=85.91 E-value=4 Score=38.58 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.8
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
.|+| |+|.|.| .|.+|.++++.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 5778 9999999 489999999999998 9888776554
No 476
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=85.91 E-value=2.8 Score=43.02 Aligned_cols=71 Identities=14% Similarity=0.006 Sum_probs=46.7
Q ss_pred cc-CCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCceEEEEec-CC----chhHHH----HHHcCceecCCCc
Q 014863 107 AF-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTL 169 (417)
Q Consensus 107 ~l-~g~kkIgIIG~G-------~mG~AiA~~Lr~s~~~~~~G~~Vivg~r-~~----~~s~~~----A~~~G~~~~d~~~ 169 (417)
.+ +| .||+|++.| ++..+++..+... |.++.+... +. ....+. +.+.|.... ..
T Consensus 165 ~~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~ 235 (335)
T PRK04523 165 TTLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VS 235 (335)
T ss_pred CccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 36 78 899776543 6788888877777 988877665 32 112222 344563221 14
Q ss_pred CCHHhhhccCCeEEEee
Q 014863 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~~~~Eav~~ADiViLav 186 (417)
.+++|++++||+|..-.
T Consensus 236 ~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 236 HDIDSAYAGADVVYAKS 252 (335)
T ss_pred cCHHHHhCCCCEEEece
Confidence 68899999999999855
No 477
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=85.80 E-value=2.1 Score=43.39 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=46.5
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.++| .||++||- +++..|++..+... |+++.+...++-.... . ..+.. ..+++|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 4788 99999997 58999999999887 9887776543211000 1 01232 578999999999887
Q ss_pred Ee
Q 014863 184 LL 185 (417)
Q Consensus 184 La 185 (417)
.-
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
No 478
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=85.66 E-value=2.4 Score=42.93 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=46.8
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCceEEEEecCC----chhHH----HHHHcCceecCCCcCCHHhhhc
Q 014863 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~g~kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~Eav~ 177 (417)
.++| .||++||-+ ++..|++..+... |.+|.+..... ....+ .+.+.|.... ...+ .++++
T Consensus 144 ~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~~ 213 (302)
T PRK14805 144 DVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAIE 213 (302)
T ss_pred CcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHHC
Confidence 4788 999999975 6778888888777 98887765432 11222 2334465421 1245 56899
Q ss_pred cCCeEEEee
Q 014863 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADiViLav 186 (417)
+||+|...+
T Consensus 214 ~aDvvy~~~ 222 (302)
T PRK14805 214 GHDAIYTDT 222 (302)
T ss_pred CCCEEEeec
Confidence 999999855
No 479
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.59 E-value=1.6 Score=47.96 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=48.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHH--------cC------ceecCCCcC
Q 014863 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AG------FTEENGTLG 170 (417)
Q Consensus 106 ~~l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~--------~G------~~~~d~~~~ 170 (417)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|...+....+.. .| +......+.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 34456 89999995 89999999999998 99988877764432222111 11 111011133
Q ss_pred C---HHhhhccCCeEEEeec
Q 014863 171 D---IYETISGSDLVLLLIS 187 (417)
Q Consensus 171 ~---~~Eav~~ADiViLavp 187 (417)
+ +.+++.++|+||.+.-
T Consensus 149 D~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CHHHHHHHhcCCCEEEEccc
Confidence 3 3446788999998864
No 480
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=85.50 E-value=2.2 Score=42.58 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=40.9
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHH-HHcCceecCCCcC-C---HHhhhccCCeEEE
Q 014863 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLG-D---IYETISGSDLVLL 184 (417)
Q Consensus 111 ~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~d~~~~-~---~~Eav~~ADiViL 184 (417)
||||.|.|. |.+|..+++.|.+. -|++|+...|...+ .... ...++......+. + ..++++++|+||-
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~-----~~~~V~~~~r~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET-----TDWEVYGMDMQTDR-LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC-----CCCeEEEEeCcHHH-HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 589999996 99999999999874 04787665553221 1111 1123221111121 2 2356788999984
Q ss_pred e
Q 014863 185 L 185 (417)
Q Consensus 185 a 185 (417)
+
T Consensus 75 ~ 75 (347)
T PRK11908 75 L 75 (347)
T ss_pred C
Confidence 3
No 481
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.49 E-value=3.6 Score=38.32 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999994 89999999999998 99987777764
No 482
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.44 E-value=3.4 Score=38.83 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=31.0
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|..
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 567 89999996 89999999999998 99887776654
No 483
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.35 E-value=1.9 Score=34.09 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
||.|||.|..|--+|..|++. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999998 98888877653
No 484
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.35 E-value=4.1 Score=38.79 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 014863 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~g~kkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~~ADiVi 183 (417)
.++| |++.|.|.+ -+|.++|+.|.+. |.+|++..|+ .+..+...+. . ..... .-.+|+
T Consensus 4 ~l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~-~~~~~~~~~~--~------~~~~~-~~~~Dl-- 64 (252)
T PRK06079 4 ILSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN-DRMKKSLQKL--V------DEEDL-LVECDV-- 64 (252)
T ss_pred ccCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc-hHHHHHHHhh--c------cCcee-EEeCCC--
Confidence 3677 999999985 7999999999998 9998877664 2222221111 1 00000 112343
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 014863 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 Lavpd~a~~~Vl~eI~p~Lk~GaiL~~a~G~ 214 (417)
+.+..+.++++++.....+=.+|+..+|+
T Consensus 65 --~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 65 --ASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred --CCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 34455566777766544322356766775
No 485
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=85.32 E-value=1.7 Score=43.66 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=75.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeecc
Q 014863 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~Eav~--~ADiViLavpd 188 (417)
.|+-+=| .|.||.-+.+.+++. |.+++.+..++.-.... .|..+ +.+.+|+++ ++|+-++.+|+
T Consensus 9 tkvivqGitg~~gtfh~~~~l~y------Gt~~V~GvtPgkgG~~~---~g~PV----f~tV~EA~~~~~a~~svI~Vp~ 75 (293)
T COG0074 9 TKVIVQGITGKQGTFHTEQMLAY------GTKIVGGVTPGKGGQTI---LGLPV----FNTVEEAVKETGANASVIFVPP 75 (293)
T ss_pred CeEEEeccccccchHHHHHHHHh------CCceeecccCCCCceEE---cCccH----HHHHHHHHHhhCCCEEEEecCc
Confidence 6777778 689999999999999 88776665543211100 23332 456777764 58999999998
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeccchhhhhhccccCCCCCCcEEEeccCCchhhHHH
Q 014863 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 189 ~a~~~-Vl~eI~p~Lk~GaiL~~a~G~~i~~~~~~~i~~~~di~VI~v~Pn~pg~~vr~ 246 (417)
....+ +++.+-..+ ..+++++-|+..+..-..... -+...+..+-||+|+-....
T Consensus 76 ~~aadai~EAida~i--~liv~ITEgIP~~D~~~~~~~-a~~~g~~iiGPncpGiI~Pg 131 (293)
T COG0074 76 PFAADAILEAIDAGI--KLVVIITEGIPVLDMLELKRY-AREKGTRLIGPNCPGIITPG 131 (293)
T ss_pred HHHHHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHHHH-HHhcCCEEECCCCCccCcCC
Confidence 87775 444444334 236779999875432110001 12234677889999887543
No 486
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.24 E-value=5 Score=39.94 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHh----hh--ccCCe
Q 014863 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (417)
Q Consensus 109 ~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E----av--~~ADi 181 (417)
+| .+|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+... +....+..+ .. ...|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999888887 88544445444556788888886320 100012111 22 24799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~ 209 (417)
|+-++... +.+.+....++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 88887743 23444455566655554
No 487
>PRK10083 putative oxidoreductase; Provisional
Probab=85.19 E-value=8.6 Score=37.83 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=55.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCcCCHHhhhc----cCCe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~Eav~----~ADi 181 (417)
.+| .+|.|+|.|.+|.+.++.++. . |.++++..+..+...+.+.+.|.... +..-.+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 457 899999999999998887774 5 77655555555566777888886321 100112333332 3468
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|+-++... ..+.+....++++-.++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVL 257 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEE
Confidence 88777632 123333445555555443
No 488
>PRK09186 flagellin modification protein A; Provisional
Probab=85.17 E-value=3.8 Score=38.44 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++| |+|.|.|. |.+|.++|+.|.+. |++|++..|+
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~ 37 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADID 37 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecC
Confidence 467 89999995 79999999999998 9988777665
No 489
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=85.15 E-value=1.3 Score=43.02 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
+|.|||.|.-|.+.|..|++. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 699999999999999999999 99999988753
No 490
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.08 E-value=5.5 Score=37.98 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~ 150 (417)
++| +++.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 79999999999998 99988877653
No 491
>PLN02827 Alcohol dehydrogenase-like
Probab=85.06 E-value=6.6 Score=40.10 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=54.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEecCCchhHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~Eav~-----~A 179 (417)
.+| .+|.|+|.|.+|...++-++.. |..+++..+.+....+.+++.|.... +..- .+..+.+. ..
T Consensus 192 ~~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 357 8999999999999999988888 88544444434455778888886320 1000 01222221 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEE
Q 014863 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILG 209 (417)
Q Consensus 180 DiViLavpd~a~~~Vl~eI~p~Lk~G-aiL~ 209 (417)
|+|+-++-... .+......+++| -.++
T Consensus 265 d~vid~~G~~~---~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 265 DYSFECVGDTG---IATTALQSCSDGWGLTV 292 (378)
T ss_pred CEEEECCCChH---HHHHHHHhhccCCCEEE
Confidence 88888876432 223333345554 4443
No 492
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.99 E-value=8.5 Score=35.33 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 014863 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~ 151 (417)
++| ++|.|+| .|.+|.++++.|.+. |.+|++..|+..
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAA 42 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 9999999 489999999999998 998877776543
No 493
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=84.98 E-value=2 Score=43.70 Aligned_cols=65 Identities=9% Similarity=0.165 Sum_probs=46.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-eEEEEecCCchhHHHHH-HcCceecCCCcCCHHhhhccCCe
Q 014863 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 107 ~l~g~kkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~Eav~~ADi 181 (417)
.++| .||++||= +++..|++..+... |. ++.+.....- +.... ...+.. ..++++++++||+
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCE
Confidence 4778 99999997 69999999999887 87 7766554321 10011 112432 4688999999999
Q ss_pred EEE
Q 014863 182 VLL 184 (417)
Q Consensus 182 ViL 184 (417)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 986
No 494
>PRK14031 glutamate dehydrogenase; Provisional
Probab=84.95 E-value=2.7 Score=44.80 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r 148 (417)
..|+| ++|+|.|+|+.|...|+.|.+. |.+|++..+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 46899 9999999999999999999998 998776333
No 495
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=84.92 E-value=2.2 Score=44.72 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=51.2
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCchhHHHHHHcCceecCCCcCCHHh
Q 014863 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 106 ~~l~g~kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~E 174 (417)
..++| ++|+|+|+ .+-...+++.|++. | .+|.+++..-. ........... ..+.+|
T Consensus 316 ~~~~~-~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~------gg~~v~~~DP~~~-~~~~~~~~~~~-----~~~~~~ 382 (415)
T PRK11064 316 KRASE-VKIACFGLAFKPNIDDLRESPAMEIAELIAQW------HSGETLVVEPNIH-QLPKKLDGLVT-----LVSLDE 382 (415)
T ss_pred cCcCC-CEEEEEeeEECCCCcchhhChHHHHHHHHHhc------CCcEEEEECCCCC-chhhhccCcee-----eCCHHH
Confidence 34688 99999998 45677888888887 7 77766554321 11111111222 457889
Q ss_pred hhccCCeEEEeecchhHHH
Q 014863 175 TISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 175 av~~ADiViLavpd~a~~~ 193 (417)
++++||+|+++++-....+
T Consensus 383 ~~~~ad~vvi~t~~~~~~~ 401 (415)
T PRK11064 383 ALATADVLVMLVDHSQFKA 401 (415)
T ss_pred HHhCCCEEEECCCCHHhcc
Confidence 9999999999999877654
No 496
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=84.71 E-value=1.4 Score=43.52 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCceEE
Q 014863 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (417)
Q Consensus 106 ~~l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi 144 (417)
..++| +||+|.|+|+.|...|+-|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 57889 9999999999999999999988 98876
No 497
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.61 E-value=5.3 Score=39.05 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=53.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCce-EEEEecCCchhHHHHHHcCceec-CCCcCCHHh----hhccCCe
Q 014863 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDL 181 (417)
Q Consensus 108 l~g~kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~E----av~~ADi 181 (417)
.+| .+|.|+|.|.+|.+.++.++.. |.+ |++..+. .+..+.+.+.|.... +..-.+..+ .-+..|+
T Consensus 158 ~~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~ 229 (334)
T cd08234 158 KPG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEPN-EEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDV 229 (334)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECCC-HHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcE
Confidence 356 8999999999999999988888 887 5444443 444556666665210 100011110 1245899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 014863 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 182 ViLavpd~a~~~Vl~eI~p~Lk~GaiL~~ 210 (417)
|+-++... ..+.+....|+++..++.
T Consensus 230 v~~~~~~~---~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 230 VIEATGVP---KTLEQAIEYARRGGTVLV 255 (334)
T ss_pred EEECCCCh---HHHHHHHHHHhcCCEEEE
Confidence 99888632 233333444555554443
No 498
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.60 E-value=3.2 Score=39.16 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.6
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 014863 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~g~kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~ 149 (417)
++| |++.|.|. |-+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 678 99999996 78999999999998 9998877665
No 499
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=84.59 E-value=5.6 Score=37.55 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=44.1
Q ss_pred EEEEEcccchHHHH-HHHHHhhhhhhcCCc-eEEEEecCCchhHH--------HHHHcCceecCCCcCCHHhhhccCCeE
Q 014863 113 QIGVIGWGSQGPAQ-AQNLRDSLAEAKSDI-VVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~-~Vivg~r~~~~s~~--------~A~~~G~~~~d~~~~~~~Eav~~ADiV 182 (417)
||+|||.|+.-.+. ...+.... ..... ++.. .+.+++.++ ..++.|....-...+|.+||+++||+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~--~~l~~~ei~L-~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT--EELSGSEIVL-MDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT--TTSTEEEEEE-E-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcC--ccCCCcEEEE-EcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEE
Confidence 79999999886663 22222220 01122 4544 444443332 222334321112357899999999999
Q ss_pred EEeecchhHHH-HHHHHHh
Q 014863 183 LLLISDAAQAD-NYEKIFS 200 (417)
Q Consensus 183 iLavpd~a~~~-Vl~eI~p 200 (417)
|..+-+.-... ..++-.|
T Consensus 78 i~~irvGg~~~r~~De~Ip 96 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIP 96 (183)
T ss_dssp EE---TTHHHHHHHHHHTG
T ss_pred EEEeeecchHHHHHHHHHH
Confidence 99998876653 3344333
No 500
>PRK08324 short chain dehydrogenase; Validated
Probab=84.57 E-value=3.1 Score=46.27 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.5
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCch
Q 014863 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 106 ~~l~g~kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vivg~r~~~~ 152 (417)
+.++| ++|.|+| .|-+|.++++.|.+. |.+|++..|+..+
T Consensus 418 ~~l~g-k~vLVTGasggIG~~la~~L~~~------Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAG-KVALVTGAAGGIGKATAKRLAAE------GACVVLADLDEEA 458 (681)
T ss_pred cCCCC-CEEEEecCCCHHHHHHHHHHHHC------cCEEEEEeCCHHH
Confidence 45678 9999999 599999999999998 9988877776443
Done!