RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014863
(417 letters)
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 281 bits (719), Expect = 2e-94
Identities = 190/226 (84%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 288
Score = 164 bits (418), Expect = 1e-48
Identities = 98/116 (84%), Positives = 109/116 (93%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
LEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+
Sbjct: 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTK 60
Query: 354 GMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 61 GMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFY 116
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 143 bits (361), Expect = 1e-41
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q + ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV---PRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 145
Score = 91.9 bits (228), Expect = 7e-23
Identities = 21/122 (17%), Positives = 44/122 (36%)
Query: 295 EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQG 354
+ E +D+FGE+ +L G +V++ F E G ++AY + + I+ +
Sbjct: 2 KDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGI 61
Query: 355 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYR 414
Y+ + + E+ + + + G + + G Y S
Sbjct: 62 ANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTA 121
Query: 415 LR 416
R
Sbjct: 122 YR 123
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 36.0 bits (82), Expect = 0.004
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
V+G G+ G A A L +K +G+ AG +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM 222
DI + +D++L+++ A I S + ++ L+ G G L+
Sbjct: 64 SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFR 116
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 26.7 bits (58), Expect = 3.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 113 QIGVIGWGSQGPAQAQNLRDS 133
++G IG+G A LR
Sbjct: 2 RVGFIGFGEVAQTLASRLRSR 22
>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
[TaxId: 5061]}
Length = 261
Score = 27.1 bits (59), Expect = 4.2
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGII------SKIISTQGMLAVYNS 361
+ GI E L+ R E AY + + II + G + ++
Sbjct: 2 STQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDT 57
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 26.1 bits (56), Expect = 5.8
Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 20/166 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDS--------LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164
+GV+G G G A N+ + +KS+ +K A A AG +
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN--------ASAPFAGNLK 54
Query: 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKPNSILGLSHGFLLGHLQSMG 223
T+ ++ L+L+ A D+ + + IL +
Sbjct: 55 AFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRA 114
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269
G R +G G S + + +
Sbjct: 115 QQLEAAGLRFLGMGISGGEEGAR---KGPAFFPGGTLSVWEEIRPI 157
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.4 bits (57), Expect = 6.3
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 317 VESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376
L++ E G+ D K + + +I++ ++ LA Y + K S
Sbjct: 210 KNDLYQSLKEEGIAGDPGDKQ--QFVERLIARGLTYDNALAQYEAE-LRFFKALHLHSSL 266
Query: 377 SYYPCMEILY 386
Y P M+I +
Sbjct: 267 VYAPNMKITF 276
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 26.0 bits (56), Expect = 6.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 111 INQIGVIGWGSQGPAQAQNLRDS 133
+ QI IG G G A NL +
Sbjct: 1 MKQIAFIGLGHMGAPMATNLLKA 23
>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 130
Score = 25.7 bits (56), Expect = 7.2
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 330 NEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECY 389
N ++ +E SKI + F + + + + I +
Sbjct: 15 NANMVRHEKLEVPA---SKIKREIAEILKREGFIRDYEYI-----EDNKQGILRIFLKYG 66
Query: 390 EDVAAGSEIRSVVLAGRRFYVSSYRL 415
+ + ++ + G R YV ++ +
Sbjct: 67 PNERVITGLKRISKPGLRVYVKAHEV 92
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Length = 343
Score = 26.5 bits (58), Expect = 7.3
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 2 AAATLPFSRPIPKFSPSPSSETLKEALKHL 31
P P F+PS E L +A+
Sbjct: 28 KGGPGSAVSPYPTFNPSSDVEALHKAITVK 57
>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
subtilis [TaxId: 1423]}
Length = 274
Score = 25.9 bits (57), Expect = 9.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDV 269
M VR Y+ + + G+N+ A + DV
Sbjct: 117 MIFGVRHFYINDRPVGELGLNAYVAGYYDV 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,491,546
Number of extensions: 68388
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 17
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)