Query 014864
Match_columns 417
No_of_seqs 358 out of 2121
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 09:15:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 1E-76 2.2E-81 497.1 28.7 406 7-415 5-416 (526)
2 KOG0166 Karyopherin (importin) 100.0 1.1E-73 2.4E-78 515.6 39.4 403 9-415 5-409 (514)
3 KOG0166 Karyopherin (importin) 100.0 2.2E-44 4.7E-49 325.8 28.4 325 73-401 109-438 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.8E-43 3.8E-48 297.3 18.0 328 72-403 113-447 (526)
5 PLN03200 cellulose synthase-in 100.0 8.4E-37 1.8E-41 315.3 38.1 337 72-411 188-571 (2102)
6 PLN03200 cellulose synthase-in 100.0 2.2E-34 4.8E-39 297.5 38.1 337 73-414 404-780 (2102)
7 KOG4224 Armadillo repeat prote 100.0 9.1E-29 2E-33 210.5 25.5 322 72-402 166-496 (550)
8 KOG4224 Armadillo repeat prote 100.0 4.1E-29 8.8E-34 212.6 20.9 331 71-412 124-457 (550)
9 PF05804 KAP: Kinesin-associat 99.9 3.9E-21 8.5E-26 184.8 32.4 325 73-413 290-619 (708)
10 PF05804 KAP: Kinesin-associat 99.9 4.4E-20 9.4E-25 177.7 33.1 321 76-413 253-576 (708)
11 KOG0168 Putative ubiquitin fus 99.8 2.2E-17 4.7E-22 155.2 24.6 334 74-412 168-598 (1051)
12 KOG1048 Neural adherens juncti 99.8 9.3E-18 2E-22 158.1 21.3 337 71-415 231-656 (717)
13 PF10508 Proteasom_PSMB: Prote 99.8 2.8E-15 6E-20 143.1 33.4 339 73-417 119-491 (503)
14 PF10508 Proteasom_PSMB: Prote 99.8 2.7E-15 5.8E-20 143.2 33.0 334 74-416 78-435 (503)
15 KOG4199 Uncharacterized conser 99.7 1.9E-15 4.1E-20 128.4 25.3 310 84-400 118-445 (461)
16 PRK09687 putative lyase; Provi 99.7 1.7E-15 3.6E-20 132.9 23.4 254 74-396 24-279 (280)
17 KOG4199 Uncharacterized conser 99.7 1E-14 2.2E-19 124.1 26.0 292 114-413 102-416 (461)
18 KOG1048 Neural adherens juncti 99.7 2E-15 4.3E-20 142.5 18.8 282 118-401 235-597 (717)
19 PRK09687 putative lyase; Provi 99.7 1.1E-14 2.5E-19 127.7 21.2 228 117-400 24-251 (280)
20 KOG4500 Rho/Rac GTPase guanine 99.7 5.3E-15 1.2E-19 129.7 18.1 312 85-401 54-392 (604)
21 KOG2122 Beta-catenin-binding p 99.6 2.9E-14 6.3E-19 140.9 22.7 336 73-415 197-574 (2195)
22 KOG2122 Beta-catenin-binding p 99.6 5.1E-15 1.1E-19 146.2 17.2 266 92-360 317-604 (2195)
23 KOG2023 Nuclear transport rece 99.6 5.7E-15 1.2E-19 135.8 16.4 322 73-409 128-515 (885)
24 KOG2171 Karyopherin (importin) 99.6 4E-13 8.8E-18 131.7 28.4 327 75-409 120-514 (1075)
25 PF04826 Arm_2: Armadillo-like 99.6 1.1E-13 2.5E-18 118.5 21.9 196 113-315 9-206 (254)
26 PF04826 Arm_2: Armadillo-like 99.6 1.5E-13 3.2E-18 117.9 19.0 227 156-390 9-253 (254)
27 cd00020 ARM Armadillo/beta-cat 99.6 5.1E-14 1.1E-18 108.6 14.9 118 281-399 3-120 (120)
28 PRK13800 putative oxidoreducta 99.6 1.1E-12 2.4E-17 134.2 28.7 244 74-397 622-865 (897)
29 cd00020 ARM Armadillo/beta-cat 99.6 9.1E-14 2E-18 107.2 14.5 119 111-231 2-120 (120)
30 KOG4500 Rho/Rac GTPase guanine 99.6 2.2E-12 4.8E-17 113.5 24.4 324 73-400 87-432 (604)
31 PRK13800 putative oxidoreducta 99.5 3.6E-12 7.9E-17 130.4 27.7 245 73-396 652-896 (897)
32 KOG2171 Karyopherin (importin) 99.5 4.9E-12 1.1E-16 124.2 26.3 323 76-407 82-469 (1075)
33 KOG1222 Kinesin associated pro 99.5 1.8E-11 4E-16 109.3 27.3 326 74-409 305-672 (791)
34 PF01749 IBB: Importin beta bi 99.5 3.9E-15 8.5E-20 107.5 2.6 91 5-95 2-96 (97)
35 KOG2023 Nuclear transport rece 99.5 1.1E-12 2.5E-17 121.0 16.3 273 117-401 129-465 (885)
36 cd00256 VATPase_H VATPase_H, r 99.5 7.3E-11 1.6E-15 107.9 27.8 322 74-400 54-426 (429)
37 KOG1293 Proteins containing ar 99.5 5.2E-11 1.1E-15 110.4 24.6 338 73-414 95-547 (678)
38 cd00256 VATPase_H VATPase_H, r 99.4 1.2E-10 2.6E-15 106.5 23.3 280 74-357 102-425 (429)
39 KOG1241 Karyopherin (importin) 99.4 3.3E-11 7.2E-16 113.2 18.9 320 73-400 125-478 (859)
40 KOG1222 Kinesin associated pro 99.4 6.5E-10 1.4E-14 99.6 25.8 304 86-400 276-622 (791)
41 PTZ00429 beta-adaptin; Provisi 99.4 1.1E-09 2.4E-14 107.8 29.8 295 73-400 32-327 (746)
42 PF01602 Adaptin_N: Adaptin N 99.4 3.5E-11 7.6E-16 117.6 18.7 293 73-400 42-334 (526)
43 PTZ00429 beta-adaptin; Provisi 99.3 5.8E-09 1.2E-13 102.8 31.8 302 73-401 68-399 (746)
44 KOG1293 Proteins containing ar 99.3 7.4E-10 1.6E-14 102.9 23.8 326 78-406 14-497 (678)
45 PF01602 Adaptin_N: Adaptin N 99.3 4.4E-10 9.6E-15 109.9 22.9 289 77-401 8-298 (526)
46 KOG1241 Karyopherin (importin) 99.3 3.7E-10 8.1E-15 106.3 20.1 325 76-407 175-538 (859)
47 KOG0946 ER-Golgi vesicle-tethe 99.3 1.6E-08 3.4E-13 95.9 30.2 325 73-403 22-403 (970)
48 KOG2759 Vacuolar H+-ATPase V1 99.2 1.2E-09 2.7E-14 96.5 19.2 280 75-358 116-439 (442)
49 KOG2160 Armadillo/beta-catenin 99.2 1.5E-09 3.2E-14 94.7 17.5 184 130-314 96-282 (342)
50 KOG0168 Putative ubiquitin fus 99.2 1.8E-09 3.9E-14 102.8 19.4 260 118-381 169-437 (1051)
51 KOG2160 Armadillo/beta-catenin 99.2 3.8E-09 8.3E-14 92.2 18.5 186 83-271 93-281 (342)
52 KOG2759 Vacuolar H+-ATPase V1 99.2 1.6E-08 3.5E-13 89.6 22.4 323 74-400 66-439 (442)
53 KOG1517 Guanine nucleotide bin 99.1 9.1E-09 2E-13 100.2 19.7 269 88-367 451-742 (1387)
54 COG5215 KAP95 Karyopherin (imp 99.0 4.4E-08 9.6E-13 89.8 18.4 315 73-401 129-481 (858)
55 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.7E-08 3.8E-13 91.0 15.3 229 161-392 57-307 (312)
56 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.2E-08 2.5E-13 92.2 14.2 216 76-296 61-294 (312)
57 KOG0946 ER-Golgi vesicle-tethe 99.0 9.1E-07 2E-11 84.4 26.5 289 117-411 23-357 (970)
58 KOG0213 Splicing factor 3b, su 98.9 1.7E-07 3.8E-12 88.5 19.4 318 74-401 717-1067(1172)
59 KOG3678 SARM protein (with ste 98.9 1.5E-07 3.3E-12 84.4 17.2 272 109-397 173-450 (832)
60 COG5215 KAP95 Karyopherin (imp 98.9 4E-07 8.7E-12 83.7 19.5 320 81-409 374-721 (858)
61 KOG4413 26S proteasome regulat 98.9 3.7E-06 8.1E-11 72.4 24.1 318 76-397 85-482 (524)
62 KOG3678 SARM protein (with ste 98.8 3.4E-07 7.4E-12 82.3 17.1 267 73-356 180-451 (832)
63 TIGR02270 conserved hypothetic 98.8 4E-06 8.7E-11 77.6 23.5 242 74-400 55-297 (410)
64 KOG1517 Guanine nucleotide bin 98.7 8.7E-07 1.9E-11 86.9 18.2 248 74-325 473-743 (1387)
65 KOG1242 Protein containing ada 98.7 1.5E-05 3.2E-10 74.8 24.6 310 74-400 97-445 (569)
66 KOG1059 Vesicle coat complex A 98.7 5.6E-06 1.2E-10 78.4 22.0 257 117-403 145-405 (877)
67 COG5369 Uncharacterized conser 98.7 8.7E-08 1.9E-12 87.3 9.8 281 112-397 427-739 (743)
68 KOG1062 Vesicle coat complex A 98.7 1.1E-05 2.3E-10 77.5 23.7 100 78-191 112-211 (866)
69 COG5181 HSH155 U2 snRNP splice 98.7 1E-06 2.2E-11 81.9 16.0 266 75-359 606-872 (975)
70 KOG1062 Vesicle coat complex A 98.7 7.2E-06 1.6E-10 78.7 21.5 276 75-382 144-453 (866)
71 COG1413 FOG: HEAT repeat [Ener 98.6 1.5E-05 3.2E-10 73.2 22.8 251 73-400 43-305 (335)
72 KOG0213 Splicing factor 3b, su 98.6 2.1E-06 4.5E-11 81.5 16.5 262 76-358 802-1066(1172)
73 PF14664 RICTOR_N: Rapamycin-i 98.6 8.3E-06 1.8E-10 74.6 19.1 316 75-399 27-364 (371)
74 COG5181 HSH155 U2 snRNP splice 98.6 1.5E-06 3.2E-11 80.8 13.8 236 160-401 605-872 (975)
75 KOG1059 Vesicle coat complex A 98.6 1.8E-05 4E-10 75.1 21.0 219 75-315 146-366 (877)
76 KOG1824 TATA-binding protein-i 98.6 6.5E-06 1.4E-10 80.2 18.4 311 77-400 9-362 (1233)
77 KOG2973 Uncharacterized conser 98.5 6.3E-05 1.4E-09 64.6 21.8 267 118-398 5-314 (353)
78 KOG2973 Uncharacterized conser 98.5 4.8E-05 1E-09 65.3 21.0 272 75-358 5-316 (353)
79 PF00514 Arm: Armadillo/beta-c 98.5 2.7E-07 5.8E-12 55.4 5.5 41 359-399 1-41 (41)
80 KOG1824 TATA-binding protein-i 98.5 4E-06 8.7E-11 81.6 16.1 311 78-412 573-899 (1233)
81 KOG1060 Vesicle coat complex A 98.5 5.8E-05 1.3E-09 72.5 22.8 302 74-409 109-468 (968)
82 KOG1061 Vesicle coat complex A 98.5 4.6E-06 9.9E-11 79.9 15.7 230 117-358 122-380 (734)
83 KOG0212 Uncharacterized conser 98.5 1.4E-05 3E-10 73.8 17.2 318 74-403 85-410 (675)
84 KOG1242 Protein containing ada 98.5 3.4E-05 7.4E-10 72.4 20.1 270 117-401 97-403 (569)
85 COG1413 FOG: HEAT repeat [Ener 98.5 3.2E-05 6.9E-10 71.0 20.1 214 117-395 44-269 (335)
86 KOG1061 Vesicle coat complex A 98.5 2.4E-06 5.1E-11 81.8 12.3 299 76-401 124-455 (734)
87 KOG4646 Uncharacterized conser 98.4 2.3E-06 5E-11 63.8 9.3 115 116-233 16-130 (173)
88 KOG1789 Endocytosis protein RM 98.4 0.00022 4.8E-09 70.8 25.2 315 88-410 1740-2127(2235)
89 PF00514 Arm: Armadillo/beta-c 98.4 4.9E-07 1.1E-11 54.2 4.8 41 148-188 1-41 (41)
90 TIGR02270 conserved hypothetic 98.4 8E-05 1.7E-09 69.1 21.3 214 117-400 55-268 (410)
91 KOG4646 Uncharacterized conser 98.4 6.1E-06 1.3E-10 61.6 10.9 126 71-200 14-140 (173)
92 PF13513 HEAT_EZ: HEAT-like re 98.4 7.5E-07 1.6E-11 57.5 5.2 55 342-397 1-55 (55)
93 KOG1789 Endocytosis protein RM 98.4 0.00067 1.5E-08 67.5 27.1 319 71-397 1769-2164(2235)
94 PF12348 CLASP_N: CLASP N term 98.4 6.7E-06 1.5E-10 70.9 12.5 188 83-278 17-212 (228)
95 COG5231 VMA13 Vacuolar H+-ATPa 98.4 2.4E-05 5.2E-10 67.2 15.0 224 131-357 163-428 (432)
96 PF10165 Ric8: Guanine nucleot 98.3 0.0002 4.3E-09 67.8 22.4 255 107-362 13-342 (446)
97 KOG2259 Uncharacterized conser 98.3 4.5E-05 9.8E-10 71.8 16.7 225 162-406 201-481 (823)
98 COG5369 Uncharacterized conser 98.3 1.4E-05 3.1E-10 73.3 12.7 202 176-379 406-617 (743)
99 KOG0212 Uncharacterized conser 98.3 0.00013 2.9E-09 67.6 18.8 232 117-358 168-407 (675)
100 PF05536 Neurochondrin: Neuroc 98.2 0.00021 4.5E-09 69.2 20.4 238 160-400 6-262 (543)
101 KOG1240 Protein kinase contain 98.2 6.1E-05 1.3E-09 75.6 16.7 267 75-357 424-725 (1431)
102 KOG1077 Vesicle coat complex A 98.2 0.00093 2E-08 63.8 23.3 300 75-399 113-433 (938)
103 PF13646 HEAT_2: HEAT repeats; 98.2 5E-06 1.1E-10 59.7 6.9 87 118-227 1-88 (88)
104 KOG2062 26S proteasome regulat 98.2 3.9E-05 8.5E-10 73.1 14.3 239 117-401 414-655 (929)
105 KOG0567 HEAT repeat-containing 98.2 0.00047 1E-08 58.1 18.5 243 84-397 16-278 (289)
106 PF05536 Neurochondrin: Neuroc 98.2 0.00016 3.4E-09 70.0 18.1 235 73-313 5-260 (543)
107 KOG0915 Uncharacterized conser 98.2 6.4E-05 1.4E-09 77.1 15.6 315 76-403 821-1164(1702)
108 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.00025 5.5E-09 61.2 16.8 231 167-399 157-428 (432)
109 PF13646 HEAT_2: HEAT repeats; 98.2 6E-06 1.3E-10 59.3 6.2 87 245-353 1-88 (88)
110 KOG1943 Beta-tubulin folding c 98.1 0.0033 7.1E-08 63.1 26.2 314 74-400 342-706 (1133)
111 PF12348 CLASP_N: CLASP N term 98.1 2.7E-05 5.8E-10 67.2 10.7 183 211-400 16-207 (228)
112 KOG1240 Protein kinase contain 98.1 0.00019 4.2E-09 72.2 17.5 272 117-400 423-726 (1431)
113 COG5240 SEC21 Vesicle coat com 98.1 0.00035 7.7E-09 65.0 17.1 280 84-399 275-555 (898)
114 KOG1060 Vesicle coat complex A 98.1 0.0011 2.3E-08 64.2 20.6 287 75-400 37-351 (968)
115 PF13513 HEAT_EZ: HEAT-like re 98.1 6E-06 1.3E-10 53.2 4.1 55 299-355 1-55 (55)
116 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0014 3.1E-08 60.2 20.6 235 161-402 27-272 (371)
117 KOG4413 26S proteasome regulat 98.0 0.0017 3.6E-08 56.6 19.4 302 89-400 59-378 (524)
118 KOG2259 Uncharacterized conser 98.0 6E-05 1.3E-09 71.0 11.4 290 76-400 201-512 (823)
119 KOG2734 Uncharacterized conser 98.0 0.0069 1.5E-07 54.9 23.6 240 93-337 104-371 (536)
120 KOG1077 Vesicle coat complex A 98.0 0.0049 1.1E-07 59.1 23.7 308 74-406 75-405 (938)
121 KOG0915 Uncharacterized conser 98.0 0.00078 1.7E-08 69.6 19.2 288 117-411 999-1318(1702)
122 PF12460 MMS19_C: RNAPII trans 98.0 0.0076 1.6E-07 56.9 25.0 113 286-401 272-396 (415)
123 KOG0211 Protein phosphatase 2A 97.9 0.00056 1.2E-08 67.7 16.3 308 75-399 357-664 (759)
124 KOG1991 Nuclear transport rece 97.9 0.0023 5E-08 63.6 20.1 281 116-403 410-715 (1010)
125 KOG2734 Uncharacterized conser 97.9 0.006 1.3E-07 55.3 20.8 243 72-315 124-401 (536)
126 KOG2274 Predicted importin 9 [ 97.9 0.0083 1.8E-07 59.2 22.9 318 84-411 461-792 (1005)
127 COG5096 Vesicle coat complex, 97.8 0.0086 1.9E-07 59.1 22.7 167 82-272 28-195 (757)
128 KOG2274 Predicted importin 9 [ 97.8 0.012 2.6E-07 58.2 23.2 237 169-414 460-703 (1005)
129 smart00185 ARM Armadillo/beta- 97.8 8.3E-05 1.8E-09 44.4 5.4 38 361-398 3-40 (41)
130 KOG1248 Uncharacterized conser 97.8 0.006 1.3E-07 61.9 20.6 242 122-368 659-910 (1176)
131 PF09759 Atx10homo_assoc: Spin 97.8 0.00021 4.5E-09 51.7 7.9 67 133-199 2-70 (102)
132 smart00185 ARM Armadillo/beta- 97.8 9E-05 1.9E-09 44.3 5.3 39 149-187 2-40 (41)
133 COG5096 Vesicle coat complex, 97.8 0.0017 3.7E-08 63.8 16.6 161 218-400 36-196 (757)
134 KOG0211 Protein phosphatase 2A 97.7 0.0049 1.1E-07 61.3 19.4 149 202-357 399-547 (759)
135 KOG1967 DNA repair/transcripti 97.7 0.00051 1.1E-08 67.5 12.1 189 161-355 817-1022(1030)
136 PF12755 Vac14_Fab1_bd: Vacuol 97.7 0.0004 8.6E-09 50.3 8.7 92 302-397 3-94 (97)
137 PF10165 Ric8: Guanine nucleot 97.7 0.012 2.6E-07 55.9 20.4 232 83-317 42-340 (446)
138 KOG1248 Uncharacterized conser 97.6 0.011 2.4E-07 60.2 20.7 237 170-410 665-909 (1176)
139 KOG0567 HEAT repeat-containing 97.6 0.0086 1.9E-07 50.7 16.4 227 75-357 38-280 (289)
140 PF09759 Atx10homo_assoc: Spin 97.6 0.00063 1.4E-08 49.2 8.6 68 301-368 2-70 (102)
141 PF11841 DUF3361: Domain of un 97.6 0.0036 7.8E-08 49.2 13.3 132 279-411 5-143 (160)
142 PF08569 Mo25: Mo25-like; Int 97.6 0.0023 5.1E-08 57.7 13.8 203 154-358 71-284 (335)
143 KOG1078 Vesicle coat complex C 97.6 0.0068 1.5E-07 58.9 17.1 69 118-192 247-315 (865)
144 KOG1058 Vesicle coat complex C 97.5 0.0054 1.2E-07 59.2 16.2 247 125-410 108-357 (948)
145 PF12717 Cnd1: non-SMC mitotic 97.5 0.0057 1.2E-07 50.3 14.7 93 215-315 1-93 (178)
146 KOG2062 26S proteasome regulat 97.5 0.015 3.2E-07 56.3 18.8 226 118-385 451-680 (929)
147 PF05004 IFRD: Interferon-rela 97.5 0.0093 2E-07 53.6 16.8 192 74-271 44-256 (309)
148 PF11841 DUF3361: Domain of un 97.5 0.0076 1.6E-07 47.4 13.8 126 193-319 3-136 (160)
149 KOG4535 HEAT and armadillo rep 97.5 0.00025 5.4E-09 64.6 6.3 182 171-357 403-603 (728)
150 KOG4535 HEAT and armadillo rep 97.5 0.0029 6.3E-08 57.9 13.0 263 131-401 269-561 (728)
151 KOG1943 Beta-tubulin folding c 97.4 0.03 6.6E-07 56.5 20.4 262 115-400 340-612 (1133)
152 KOG4151 Myosin assembly protei 97.4 0.0041 8.8E-08 60.6 13.7 213 191-410 494-709 (748)
153 KOG0414 Chromosome condensatio 97.4 0.0018 3.9E-08 65.5 11.6 164 223-402 898-1067(1251)
154 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.00057 1.2E-08 49.5 6.1 92 219-312 3-94 (97)
155 COG5116 RPN2 26S proteasome re 97.4 0.0047 1E-07 57.8 13.2 132 247-403 520-654 (926)
156 KOG4653 Uncharacterized conser 97.4 0.0071 1.5E-07 59.4 14.7 223 164-397 732-962 (982)
157 PF08569 Mo25: Mo25-like; Int 97.3 0.011 2.3E-07 53.5 15.0 202 195-401 70-285 (335)
158 PF12717 Cnd1: non-SMC mitotic 97.3 0.01 2.3E-07 48.7 14.0 91 131-232 2-93 (178)
159 KOG1058 Vesicle coat complex C 97.3 0.017 3.6E-07 56.1 16.5 63 76-147 102-164 (948)
160 PF05004 IFRD: Interferon-rela 97.3 0.013 2.8E-07 52.6 15.4 191 205-400 47-258 (309)
161 KOG1967 DNA repair/transcripti 97.2 0.0051 1.1E-07 60.7 12.4 190 203-398 817-1023(1030)
162 PF12460 MMS19_C: RNAPII trans 97.2 0.02 4.3E-07 54.1 16.3 207 160-377 190-413 (415)
163 COG5240 SEC21 Vesicle coat com 97.2 0.041 8.8E-07 51.9 17.3 211 118-357 266-477 (898)
164 PF05918 API5: Apoptosis inhib 97.2 0.013 2.9E-07 56.0 14.2 254 119-403 26-301 (556)
165 PF13764 E3_UbLigase_R4: E3 ub 97.2 0.12 2.6E-06 52.2 21.3 216 157-377 115-383 (802)
166 KOG4151 Myosin assembly protei 97.1 0.01 2.2E-07 58.0 12.9 215 73-293 504-720 (748)
167 KOG4653 Uncharacterized conser 97.1 0.017 3.7E-07 56.8 14.3 226 119-355 730-962 (982)
168 PF12719 Cnd3: Nuclear condens 97.0 0.061 1.3E-06 48.4 16.8 170 159-339 26-209 (298)
169 PF12719 Cnd3: Nuclear condens 97.0 0.11 2.4E-06 46.7 18.3 171 116-297 26-209 (298)
170 COG5656 SXM1 Importin, protein 97.0 0.17 3.6E-06 49.5 19.7 280 115-402 407-714 (970)
171 PF05918 API5: Apoptosis inhib 97.0 0.058 1.3E-06 51.8 16.9 61 298-362 281-350 (556)
172 KOG1078 Vesicle coat complex C 97.0 0.028 6.1E-07 54.8 14.7 260 75-356 247-531 (865)
173 KOG2956 CLIP-associating prote 97.0 0.064 1.4E-06 49.4 16.1 147 202-357 330-477 (516)
174 KOG1991 Nuclear transport rece 97.0 0.34 7.4E-06 49.0 21.9 323 81-413 470-814 (1010)
175 PF08045 CDC14: Cell division 96.9 0.11 2.3E-06 44.9 15.9 102 132-233 106-209 (257)
176 PF04078 Rcd1: Cell differenti 96.9 0.039 8.3E-07 47.2 12.9 152 256-410 8-177 (262)
177 KOG3665 ZYG-1-like serine/thre 96.9 0.17 3.8E-06 50.7 19.5 197 182-397 494-695 (699)
178 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0019 4.2E-08 48.0 4.4 73 327-399 43-115 (119)
179 KOG2956 CLIP-associating prote 96.8 0.11 2.5E-06 47.8 16.3 184 215-409 300-488 (516)
180 PF04078 Rcd1: Cell differenti 96.8 0.039 8.4E-07 47.2 12.4 187 86-276 8-222 (262)
181 KOG0414 Chromosome condensatio 96.7 0.02 4.3E-07 58.3 11.9 142 160-315 920-1065(1251)
182 PF02985 HEAT: HEAT repeat; I 96.7 0.0027 5.9E-08 35.1 3.3 30 371-400 1-30 (31)
183 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0031 6.7E-08 47.0 4.4 71 286-357 44-115 (119)
184 KOG3036 Protein involved in ce 96.6 0.21 4.5E-06 42.1 15.1 144 87-232 93-248 (293)
185 PF08506 Cse1: Cse1; InterPro 96.6 0.056 1.2E-06 49.8 13.1 143 245-394 212-370 (370)
186 PF14668 RICTOR_V: Rapamycin-i 96.5 0.026 5.6E-07 38.2 7.8 66 345-413 4-70 (73)
187 PF11864 DUF3384: Domain of un 96.5 0.82 1.8E-05 44.0 24.3 286 88-399 5-330 (464)
188 PF06371 Drf_GBD: Diaphanous G 96.5 0.03 6.4E-07 46.5 10.1 111 74-187 67-186 (187)
189 KOG2032 Uncharacterized conser 96.4 0.77 1.7E-05 42.9 18.9 255 124-399 266-531 (533)
190 PF02985 HEAT: HEAT repeat; I 96.4 0.0042 9.2E-08 34.3 3.0 29 328-357 1-29 (31)
191 KOG1020 Sister chromatid cohes 96.3 1.9 4.2E-05 46.0 24.1 81 300-384 1187-1278(1692)
192 KOG3036 Protein involved in ce 96.3 0.45 9.8E-06 40.2 15.2 138 260-400 96-248 (293)
193 COG5116 RPN2 26S proteasome re 96.2 0.15 3.2E-06 48.3 13.4 154 163-339 520-674 (926)
194 KOG1566 Conserved protein Mo25 96.1 0.71 1.5E-05 40.6 16.2 202 195-401 73-288 (342)
195 KOG1566 Conserved protein Mo25 96.1 0.42 9.1E-06 41.9 14.5 202 154-358 74-287 (342)
196 PF08045 CDC14: Cell division 96.0 0.15 3.3E-06 43.9 11.7 100 89-189 107-208 (257)
197 KOG1820 Microtubule-associated 96.0 0.42 9.1E-06 48.5 16.4 185 77-272 257-443 (815)
198 KOG1020 Sister chromatid cohes 96.0 0.095 2.1E-06 55.1 11.9 164 220-397 795-958 (1692)
199 PF11701 UNC45-central: Myosin 96.0 0.028 6E-07 45.0 6.8 148 202-354 4-156 (157)
200 PF11865 DUF3385: Domain of un 96.0 0.065 1.4E-06 43.0 8.9 147 116-271 10-156 (160)
201 KOG2933 Uncharacterized conser 95.9 0.12 2.6E-06 45.1 10.3 146 242-401 87-236 (334)
202 PF14500 MMS19_N: Dos2-interac 95.9 1.1 2.5E-05 39.2 18.5 226 162-404 2-242 (262)
203 PF07814 WAPL: Wings apart-lik 95.8 0.52 1.1E-05 43.6 15.1 265 118-402 23-358 (361)
204 PF11701 UNC45-central: Myosin 95.7 0.075 1.6E-06 42.6 8.3 146 75-228 5-156 (157)
205 PF12530 DUF3730: Protein of u 95.7 1.1 2.4E-05 38.6 15.8 201 162-384 3-217 (234)
206 PF14668 RICTOR_V: Rapamycin-i 95.6 0.12 2.7E-06 34.9 7.7 67 302-370 4-70 (73)
207 PF11864 DUF3384: Domain of un 95.6 2.3 4.9E-05 41.0 19.4 255 80-356 35-329 (464)
208 KOG1820 Microtubule-associated 95.6 0.37 8E-06 48.9 14.2 187 162-357 256-443 (815)
209 KOG2032 Uncharacterized conser 95.6 2 4.4E-05 40.3 19.1 256 81-356 266-530 (533)
210 KOG1243 Protein kinase [Genera 95.6 0.45 9.8E-06 46.4 14.0 189 198-399 327-515 (690)
211 COG5098 Chromosome condensatio 95.4 0.69 1.5E-05 45.1 14.5 145 115-275 891-1040(1128)
212 PF01603 B56: Protein phosphat 95.4 0.51 1.1E-05 44.4 13.9 234 74-321 134-377 (409)
213 COG5098 Chromosome condensatio 95.4 0.079 1.7E-06 51.2 8.2 143 243-401 892-1039(1128)
214 PF01603 B56: Protein phosphat 95.3 2.4 5.1E-05 40.0 17.9 236 155-404 129-374 (409)
215 KOG1243 Protein kinase [Genera 95.3 0.97 2.1E-05 44.2 15.2 256 77-357 258-515 (690)
216 PRK14707 hypothetical protein; 95.2 5.9 0.00013 44.2 21.7 285 74-366 164-454 (2710)
217 PF12231 Rif1_N: Rap1-interact 95.2 2.7 5.8E-05 39.1 18.8 224 172-400 59-304 (372)
218 KOG2611 Neurochondrin/leucine- 95.0 3.1 6.6E-05 39.0 17.4 191 76-270 14-223 (698)
219 PF06025 DUF913: Domain of Unk 95.0 1.4 3.1E-05 40.8 15.3 197 178-383 3-209 (379)
220 PF01347 Vitellogenin_N: Lipop 95.0 1.2 2.5E-05 44.9 16.0 197 117-348 396-613 (618)
221 PF12530 DUF3730: Protein of u 95.0 2.1 4.6E-05 36.9 18.6 202 118-339 2-215 (234)
222 PF13251 DUF4042: Domain of un 95.0 0.85 1.8E-05 37.3 12.1 113 161-273 42-175 (182)
223 KOG2025 Chromosome condensatio 94.9 0.2 4.3E-06 48.7 9.4 129 217-353 61-189 (892)
224 PF06025 DUF913: Domain of Unk 94.8 0.85 1.8E-05 42.3 13.3 133 109-242 98-243 (379)
225 PRK14707 hypothetical protein; 94.8 8.8 0.00019 43.0 21.5 283 74-364 206-494 (2710)
226 PF13764 E3_UbLigase_R4: E3 ub 94.7 5.8 0.00013 40.6 21.2 219 113-337 114-386 (802)
227 KOG2137 Protein kinase [Signal 94.7 0.94 2E-05 44.4 13.4 137 238-383 384-521 (700)
228 KOG2999 Regulator of Rac1, req 94.6 0.72 1.6E-05 43.7 12.0 159 74-236 84-247 (713)
229 PF12231 Rif1_N: Rap1-interact 94.6 3.9 8.5E-05 38.1 19.4 309 83-400 3-353 (372)
230 PF04063 DUF383: Domain of unk 94.6 0.19 4.2E-06 41.5 7.5 109 169-277 5-137 (192)
231 smart00638 LPD_N Lipoprotein N 94.5 2.4 5.2E-05 42.2 16.6 135 243-397 393-543 (574)
232 KOG2999 Regulator of Rac1, req 94.5 1.4 3E-05 41.9 13.5 165 245-411 85-254 (713)
233 KOG2005 26S proteasome regulat 94.5 2.3 5E-05 41.4 15.1 295 74-410 416-715 (878)
234 PF10363 DUF2435: Protein of u 94.4 0.2 4.3E-06 35.9 6.3 84 287-381 5-88 (92)
235 KOG2933 Uncharacterized conser 94.4 0.81 1.8E-05 40.2 11.0 147 73-231 88-234 (334)
236 PF06371 Drf_GBD: Diaphanous G 94.3 0.28 6.1E-06 40.6 8.3 82 148-230 96-186 (187)
237 PF14500 MMS19_N: Dos2-interac 94.2 3.3 7.1E-05 36.3 14.8 219 120-357 3-237 (262)
238 PF04063 DUF383: Domain of unk 94.0 0.69 1.5E-05 38.3 9.7 124 254-381 6-158 (192)
239 COG5218 YCG1 Chromosome conden 94.0 1.6 3.6E-05 41.8 13.0 108 238-351 86-193 (885)
240 KOG2137 Protein kinase [Signal 94.0 0.54 1.2E-05 46.0 10.2 133 159-298 389-521 (700)
241 KOG1832 HIV-1 Vpr-binding prot 93.9 1.5 3.2E-05 44.1 13.1 309 85-406 365-780 (1516)
242 PF08167 RIX1: rRNA processing 93.9 0.53 1.2E-05 38.0 8.7 113 286-400 26-144 (165)
243 PF12830 Nipped-B_C: Sister ch 93.7 2.5 5.3E-05 35.0 12.6 146 74-232 9-168 (187)
244 COG5656 SXM1 Importin, protein 93.6 8.4 0.00018 38.4 17.4 150 136-295 389-549 (970)
245 PF01347 Vitellogenin_N: Lipop 93.5 0.52 1.1E-05 47.4 10.0 170 203-397 397-587 (618)
246 PF13251 DUF4042: Domain of un 93.4 0.79 1.7E-05 37.5 8.9 111 247-358 44-175 (182)
247 KOG1949 Uncharacterized conser 93.4 4.3 9.3E-05 40.0 14.8 148 162-314 177-331 (1005)
248 KOG2025 Chromosome condensatio 93.4 0.7 1.5E-05 45.2 9.7 108 114-228 83-190 (892)
249 KOG1525 Sister chromatid cohes 93.3 14 0.0003 39.9 23.0 113 285-399 259-405 (1266)
250 smart00638 LPD_N Lipoprotein N 93.2 8.5 0.00019 38.3 17.7 159 160-347 394-568 (574)
251 PF04388 Hamartin: Hamartin pr 93.0 2.8 6E-05 42.2 13.8 158 73-252 4-161 (668)
252 PF07814 WAPL: Wings apart-lik 92.9 5.2 0.00011 37.1 14.7 232 161-401 23-301 (361)
253 KOG2611 Neurochondrin/leucine- 92.9 8.5 0.00018 36.2 17.2 191 121-317 16-228 (698)
254 PF10363 DUF2435: Protein of u 92.6 0.53 1.1E-05 33.7 6.1 81 329-412 5-85 (92)
255 PF11865 DUF3385: Domain of un 92.5 1.2 2.5E-05 35.9 8.6 146 242-399 9-157 (160)
256 KOG3665 ZYG-1-like serine/thre 92.3 3.1 6.7E-05 42.1 13.2 195 140-352 494-692 (699)
257 PF08506 Cse1: Cse1; InterPro 92.2 2.5 5.5E-05 39.1 11.5 131 131-267 225-370 (370)
258 KOG1993 Nuclear transport rece 92.1 14 0.00031 37.1 22.7 320 75-407 528-872 (978)
259 PLN03076 ARF guanine nucleotid 92.0 12 0.00025 42.2 17.8 263 85-357 1149-1489(1780)
260 KOG1949 Uncharacterized conser 92.0 3.5 7.6E-05 40.6 12.3 180 212-398 184-369 (1005)
261 PLN03076 ARF guanine nucleotid 92.0 25 0.00055 39.7 21.3 276 127-410 1148-1504(1780)
262 PF03378 CAS_CSE1: CAS/CSE pro 92.0 8.9 0.00019 36.5 15.1 229 164-401 76-326 (435)
263 PF08324 PUL: PUL domain; Int 91.6 3.2 6.9E-05 36.6 11.4 146 132-279 78-238 (268)
264 KOG4464 Signaling protein RIC- 91.5 11 0.00025 34.7 18.8 157 75-233 47-233 (532)
265 KOG1788 Uncharacterized conser 91.3 4.4 9.6E-05 41.9 12.6 290 71-380 464-784 (2799)
266 PF06685 DUF1186: Protein of u 91.2 9.3 0.0002 33.1 15.5 134 132-288 57-200 (249)
267 PF11707 Npa1: Ribosome 60S bi 91.1 12 0.00026 34.2 17.5 119 280-399 52-187 (330)
268 COG5209 RCD1 Uncharacterized p 90.7 1.9 4.2E-05 36.0 8.1 143 88-232 115-269 (315)
269 PF08167 RIX1: rRNA processing 90.7 1.6 3.5E-05 35.3 7.7 110 160-273 26-144 (165)
270 cd03569 VHS_Hrs_Vps27p VHS dom 90.4 1.1 2.4E-05 35.1 6.4 74 73-146 41-114 (142)
271 KOG0891 DNA-dependent protein 90.3 2.7 5.9E-05 47.8 11.2 199 155-358 561-764 (2341)
272 KOG1993 Nuclear transport rece 90.2 23 0.00049 35.8 20.5 272 119-400 529-813 (978)
273 COG5101 CRM1 Importin beta-rel 90.0 21 0.00045 35.1 17.1 113 287-402 483-602 (1053)
274 cd03568 VHS_STAM VHS domain fa 89.9 1.3 2.9E-05 34.7 6.4 74 73-146 37-110 (144)
275 KOG1992 Nuclear export recepto 89.9 24 0.00052 35.8 16.9 38 69-106 494-531 (960)
276 cd03561 VHS VHS domain family; 89.9 4.7 0.0001 31.2 9.5 76 159-234 37-115 (133)
277 COG5209 RCD1 Uncharacterized p 89.9 1.9 4.2E-05 36.0 7.4 106 302-410 117-227 (315)
278 PF11707 Npa1: Ribosome 60S bi 89.5 16 0.00036 33.3 18.4 155 118-274 58-239 (330)
279 KOG1822 Uncharacterized conser 89.5 39 0.00085 37.8 18.2 271 118-398 878-1188(2067)
280 cd03569 VHS_Hrs_Vps27p VHS dom 89.5 6.2 0.00013 30.9 9.9 75 159-233 41-116 (142)
281 PF12031 DUF3518: Domain of un 89.1 1.2 2.5E-05 37.8 5.7 83 87-171 138-228 (257)
282 PF12830 Nipped-B_C: Sister ch 89.0 12 0.00026 31.0 12.3 79 117-201 9-87 (187)
283 smart00288 VHS Domain present 88.9 1.7 3.7E-05 33.6 6.4 74 73-146 37-111 (133)
284 PF10521 DUF2454: Protein of u 88.2 5.8 0.00013 35.3 10.2 70 117-187 120-202 (282)
285 PF11538 Snurportin1: Snurport 87.8 0.59 1.3E-05 27.2 2.3 38 11-49 2-39 (40)
286 cd03561 VHS VHS domain family; 87.6 3.4 7.3E-05 32.0 7.3 74 73-146 37-112 (133)
287 PF13001 Ecm29: Proteasome sta 87.5 14 0.00031 36.0 13.0 218 170-402 248-491 (501)
288 KOG2038 CAATT-binding transcri 87.0 36 0.00079 34.3 19.6 103 118-231 306-409 (988)
289 PF12074 DUF3554: Domain of un 86.9 19 0.00041 33.1 13.1 217 113-337 19-254 (339)
290 smart00288 VHS Domain present 86.9 9 0.00019 29.6 9.3 73 160-232 38-112 (133)
291 COG5218 YCG1 Chromosome conden 86.7 14 0.00031 35.8 11.8 103 115-224 90-192 (885)
292 cd03567 VHS_GGA VHS domain fam 86.4 3.2 7E-05 32.3 6.5 74 73-146 38-116 (139)
293 PF12031 DUF3518: Domain of un 86.3 3.7 8E-05 34.9 7.1 83 216-298 138-229 (257)
294 PF06685 DUF1186: Protein of u 85.8 23 0.00049 30.7 13.8 96 284-385 72-169 (249)
295 cd03568 VHS_STAM VHS domain fa 85.7 16 0.00034 28.8 10.5 96 295-400 14-111 (144)
296 PF10274 ParcG: Parkin co-regu 85.4 19 0.00041 29.5 10.8 80 241-321 36-116 (183)
297 KOG0413 Uncharacterized conser 85.2 4.1 8.9E-05 41.6 7.9 130 173-317 945-1076(1529)
298 KOG1822 Uncharacterized conser 85.0 73 0.0016 35.9 20.0 231 160-400 877-1128(2067)
299 KOG0301 Phospholipase A2-activ 84.7 44 0.00095 33.1 16.8 160 131-295 558-726 (745)
300 KOG0891 DNA-dependent protein 83.7 11 0.00025 43.3 11.3 269 121-400 486-764 (2341)
301 PF03378 CAS_CSE1: CAS/CSE pro 83.3 20 0.00044 34.1 11.5 228 171-411 42-284 (435)
302 KOG1525 Sister chromatid cohes 83.3 75 0.0016 34.7 17.7 73 326-400 258-330 (1266)
303 KOG4464 Signaling protein RIC- 82.9 36 0.00079 31.6 12.1 153 205-357 49-231 (532)
304 KOG2549 Transcription initiati 82.4 43 0.00094 32.3 12.9 145 74-231 208-370 (576)
305 PF14726 RTTN_N: Rotatin, an a 82.3 16 0.00035 26.4 8.7 68 114-183 28-95 (98)
306 PF00790 VHS: VHS domain; Int 82.2 11 0.00024 29.4 8.1 75 159-233 42-120 (140)
307 PF14225 MOR2-PAG1_C: Cell mor 82.0 35 0.00076 30.0 16.4 213 79-313 13-253 (262)
308 COG5110 RPN1 26S proteasome re 81.9 52 0.0011 31.9 17.3 97 300-409 619-715 (881)
309 KOG0392 SNF2 family DNA-depend 81.8 19 0.00041 38.4 11.1 236 74-317 78-328 (1549)
310 PF10274 ParcG: Parkin co-regu 81.7 27 0.00059 28.6 10.8 118 285-404 38-169 (183)
311 PF12726 SEN1_N: SEN1 N termin 81.6 28 0.00062 35.8 12.8 145 74-233 442-587 (727)
312 KOG1848 Uncharacterized conser 81.3 27 0.00059 37.6 12.1 276 118-399 798-1132(1610)
313 PF10521 DUF2454: Protein of u 80.5 18 0.00039 32.2 9.7 114 286-400 120-254 (282)
314 cd08050 TAF6 TATA Binding Prot 80.1 16 0.00036 33.5 9.5 102 75-188 180-297 (343)
315 PF04388 Hamartin: Hamartin pr 79.8 20 0.00043 36.3 10.7 146 244-410 5-151 (668)
316 KOG0392 SNF2 family DNA-depend 78.7 37 0.00081 36.3 12.0 177 216-401 143-327 (1549)
317 PF13001 Ecm29: Proteasome sta 78.4 49 0.0011 32.3 12.7 173 213-400 248-444 (501)
318 cd03572 ENTH_epsin_related ENT 78.3 27 0.00059 26.5 10.5 91 303-399 19-119 (122)
319 cd03567 VHS_GGA VHS domain fam 78.2 27 0.00058 27.3 8.8 74 159-232 38-117 (139)
320 PF12783 Sec7_N: Guanine nucle 77.9 34 0.00073 27.6 9.9 111 87-199 36-157 (168)
321 KOG1988 Uncharacterized conser 77.6 90 0.002 32.1 14.7 251 76-357 27-281 (970)
322 cd08050 TAF6 TATA Binding Prot 77.2 18 0.0004 33.2 8.9 112 242-355 209-338 (343)
323 KOG2073 SAP family cell cycle 76.5 1E+02 0.0022 32.1 17.0 213 193-413 182-419 (838)
324 PF00790 VHS: VHS domain; Int 76.5 3.3 7.1E-05 32.4 3.4 74 73-146 42-118 (140)
325 PF08324 PUL: PUL domain; Int 76.3 7.7 0.00017 34.2 6.2 135 255-389 122-264 (268)
326 PF14225 MOR2-PAG1_C: Cell mor 75.6 56 0.0012 28.7 17.7 177 162-357 67-254 (262)
327 KOG2149 Uncharacterized conser 75.5 59 0.0013 30.1 11.3 133 244-380 59-192 (393)
328 KOG0413 Uncharacterized conser 74.8 1.2E+02 0.0025 32.0 19.6 130 86-233 944-1075(1529)
329 cd03572 ENTH_epsin_related ENT 74.7 28 0.00062 26.4 7.8 57 351-412 24-80 (122)
330 PF04869 Uso1_p115_head: Uso1 74.1 68 0.0015 29.0 14.5 154 131-314 52-231 (312)
331 PF08713 DNA_alkylation: DNA a 73.7 53 0.0012 27.6 10.8 141 245-411 53-195 (213)
332 smart00802 UME Domain in UVSB 71.7 23 0.0005 26.1 6.6 81 327-412 11-96 (107)
333 PF11791 Aconitase_B_N: Aconit 71.6 22 0.00047 27.9 6.6 102 243-357 22-123 (154)
334 KOG2149 Uncharacterized conser 71.4 51 0.0011 30.5 9.9 117 286-405 59-176 (393)
335 PF08389 Xpo1: Exportin 1-like 71.4 20 0.00042 27.9 6.9 125 218-352 4-148 (148)
336 KOG1832 HIV-1 Vpr-binding prot 69.9 38 0.00083 34.8 9.4 159 107-275 592-776 (1516)
337 PF14726 RTTN_N: Rotatin, an a 69.8 40 0.00086 24.4 8.3 68 325-394 28-95 (98)
338 PF09324 DUF1981: Domain of un 69.0 11 0.00023 26.6 4.3 66 198-267 14-83 (86)
339 PF11791 Aconitase_B_N: Aconit 68.3 11 0.00024 29.5 4.5 56 344-410 79-135 (154)
340 KOG0301 Phospholipase A2-activ 67.3 1.4E+02 0.003 29.8 13.7 177 167-350 552-739 (745)
341 KOG2676 Uncharacterized conser 67.1 9.4 0.0002 34.4 4.3 62 137-198 376-439 (478)
342 PF08767 CRM1_C: CRM1 C termin 66.3 1E+02 0.0023 28.0 12.0 149 218-369 43-210 (319)
343 PF08216 CTNNBL: Catenin-beta- 65.9 7.2 0.00016 28.7 2.8 43 134-177 63-105 (108)
344 PF09758 FPL: Uncharacterised 64.9 48 0.001 26.1 7.4 123 148-270 15-147 (149)
345 PF12074 DUF3554: Domain of un 64.4 1.2E+02 0.0025 27.9 17.0 195 201-402 22-238 (339)
346 PF08064 UME: UME (NUC010) dom 64.1 40 0.00088 24.8 6.7 81 327-412 11-96 (107)
347 PF11229 DUF3028: Protein of u 64.1 1.2E+02 0.0025 29.4 10.8 256 115-376 96-372 (589)
348 PF08389 Xpo1: Exportin 1-like 63.4 13 0.00028 29.0 4.3 49 257-309 100-148 (148)
349 PF10257 RAI16-like: Retinoic 63.1 1.2E+02 0.0026 28.1 11.0 131 279-412 3-170 (353)
350 PF08216 CTNNBL: Catenin-beta- 63.0 11 0.00024 27.7 3.4 43 346-389 64-106 (108)
351 PF04499 SAPS: SIT4 phosphatas 62.8 65 0.0014 31.2 9.5 84 150-233 53-150 (475)
352 KOG1992 Nuclear export recepto 62.8 1.9E+02 0.0042 29.8 23.0 76 324-401 358-437 (960)
353 cd03565 VHS_Tom1 VHS domain fa 62.7 41 0.00089 26.3 6.8 74 73-146 38-115 (141)
354 PLN03205 ATR interacting prote 62.5 1.2E+02 0.0027 28.1 10.4 161 241-402 321-519 (652)
355 smart00567 EZ_HEAT E-Z type HE 62.1 16 0.00035 19.4 3.2 13 343-355 2-14 (30)
356 cd00197 VHS_ENTH_ANTH VHS, ENT 61.9 53 0.0011 24.4 7.2 71 74-144 38-113 (115)
357 KOG1791 Uncharacterized conser 61.9 88 0.0019 34.5 10.6 206 150-356 1430-1659(1758)
358 PF06743 FAST_1: FAST kinase-l 61.8 28 0.00062 23.4 5.1 67 221-288 3-69 (71)
359 KOG3132 m3G-cap-specific nucle 61.6 5.8 0.00013 33.4 1.9 45 9-53 23-67 (325)
360 PF04499 SAPS: SIT4 phosphatas 61.6 1.1E+02 0.0024 29.6 10.7 112 285-400 21-149 (475)
361 PF12726 SEN1_N: SEN1 N termin 61.2 68 0.0015 33.1 10.0 71 341-411 494-566 (727)
362 PF09324 DUF1981: Domain of un 60.8 27 0.00059 24.5 5.0 68 324-395 14-84 (86)
363 PF03130 HEAT_PBS: PBS lyase H 60.7 4.7 0.0001 21.1 0.9 14 344-357 1-14 (27)
364 PF08713 DNA_alkylation: DNA a 60.2 1E+02 0.0022 25.8 12.2 142 118-284 53-196 (213)
365 KOG2549 Transcription initiati 60.2 1.7E+02 0.0038 28.5 11.8 132 214-356 219-369 (576)
366 PF12463 DUF3689: Protein of u 60.0 1.2E+02 0.0025 27.4 9.8 83 284-366 94-182 (303)
367 KOG2085 Serine/threonine prote 58.9 1.6E+02 0.0034 27.6 10.7 84 149-233 167-250 (457)
368 PF08767 CRM1_C: CRM1 C termin 57.3 1.5E+02 0.0033 26.9 14.1 176 174-356 42-243 (319)
369 PF12054 DUF3535: Domain of un 57.1 1.9E+02 0.004 27.8 12.3 79 87-170 101-179 (441)
370 KOG2199 Signal transducing ada 54.9 91 0.002 28.9 8.2 95 254-357 23-118 (462)
371 PF04821 TIMELESS: Timeless pr 53.8 1.6E+02 0.0034 26.0 14.7 189 71-316 11-210 (266)
372 KOG4524 Uncharacterized conser 53.7 65 0.0014 33.5 7.9 95 242-338 802-900 (1014)
373 PF12054 DUF3535: Domain of un 52.7 2.2E+02 0.0047 27.3 11.8 76 174-255 102-180 (441)
374 cd06561 AlkD_like A new struct 52.5 55 0.0012 27.0 6.5 73 330-412 108-182 (197)
375 KOG2199 Signal transducing ada 51.7 78 0.0017 29.2 7.4 96 295-400 22-119 (462)
376 KOG1087 Cytosolic sorting prot 51.5 89 0.0019 30.0 8.2 97 251-356 13-111 (470)
377 PF04869 Uso1_p115_head: Uso1 51.4 1.9E+02 0.0041 26.2 15.2 159 242-400 33-232 (312)
378 KOG4524 Uncharacterized conser 49.3 72 0.0016 33.2 7.5 93 202-295 804-899 (1014)
379 KOG0803 Predicted E3 ubiquitin 47.1 4.5E+02 0.0097 29.3 16.9 255 74-337 42-330 (1312)
380 KOG0889 Histone acetyltransfer 46.2 6.1E+02 0.013 31.5 14.5 157 116-274 984-1157(3550)
381 PF06012 DUF908: Domain of Unk 44.9 1.2E+02 0.0026 27.7 7.9 66 132-198 237-307 (329)
382 KOG2676 Uncharacterized conser 44.5 31 0.00067 31.3 3.8 62 305-367 376-439 (478)
383 cd06561 AlkD_like A new struct 44.4 1.2E+02 0.0026 25.0 7.4 74 288-368 108-181 (197)
384 PF12397 U3snoRNP10: U3 small 44.3 1.3E+02 0.0029 22.5 8.5 65 286-357 7-74 (121)
385 KOG1087 Cytosolic sorting prot 43.3 57 0.0012 31.3 5.6 71 73-143 38-109 (470)
386 PF13925 Katanin_con80: con80 42.1 1.6E+02 0.0035 23.6 7.4 73 200-273 27-99 (164)
387 PF09758 FPL: Uncharacterised 41.7 1.4E+02 0.0031 23.5 6.7 123 190-312 15-147 (149)
388 KOG1791 Uncharacterized conser 41.1 1.2E+02 0.0026 33.6 7.8 174 240-416 1436-1630(1758)
389 PF12765 Cohesin_HEAT: HEAT re 41.0 24 0.00051 20.9 1.8 25 370-394 18-42 (42)
390 PF06012 DUF908: Domain of Unk 40.7 1.2E+02 0.0026 27.7 7.2 48 107-154 254-305 (329)
391 KOG1410 Nuclear transport rece 40.7 4.1E+02 0.0088 27.0 20.5 292 74-397 6-332 (1082)
392 PF08454 RIH_assoc: RyR and IP 40.5 1.5E+02 0.0033 22.0 6.7 40 298-337 66-106 (109)
393 PF12783 Sec7_N: Guanine nucle 40.3 1.9E+02 0.0042 23.1 9.6 79 280-359 68-148 (168)
394 PF14663 RasGEF_N_2: Rapamycin 40.0 76 0.0017 23.7 4.9 38 160-198 9-46 (115)
395 PF14663 RasGEF_N_2: Rapamycin 40.0 69 0.0015 24.0 4.6 39 371-411 9-47 (115)
396 PF08064 UME: UME (NUC010) dom 39.8 1.5E+02 0.0033 21.8 6.6 79 285-368 11-95 (107)
397 KOG4231 Intracellular membrane 39.7 20 0.00044 34.1 2.0 68 331-399 332-399 (763)
398 PF01365 RYDR_ITPR: RIH domain 37.4 87 0.0019 26.3 5.5 96 131-232 75-170 (207)
399 cd03562 CID CID (CTD-Interacti 35.7 1.8E+02 0.0039 21.5 6.7 86 255-351 17-102 (114)
400 PF01365 RYDR_ITPR: RIH domain 35.6 1.8E+02 0.0038 24.4 7.0 78 300-381 76-153 (207)
401 KOG1410 Nuclear transport rece 35.1 5E+02 0.011 26.4 14.3 281 84-379 50-354 (1082)
402 PF12463 DUF3689: Protein of u 34.7 3.5E+02 0.0075 24.4 12.7 127 195-321 3-180 (303)
403 KOG1848 Uncharacterized conser 32.9 3.1E+02 0.0068 30.3 9.2 220 131-356 856-1131(1610)
404 COG5537 IRR1 Cohesin [Cell div 32.3 5.2E+02 0.011 25.8 11.6 97 171-271 287-385 (740)
405 smart00802 UME Domain in UVSB 32.3 1.3E+02 0.0028 22.3 4.9 68 116-188 11-83 (107)
406 PF07923 N1221: N1221-like pro 32.0 1.3E+02 0.0029 26.9 6.0 53 327-380 60-126 (293)
407 PF07923 N1221: N1221-like pro 31.1 94 0.002 27.8 4.9 53 285-337 60-126 (293)
408 PF15178 TOM_sub5: Mitochondri 30.9 71 0.0015 19.2 2.6 21 17-37 8-29 (51)
409 KOG2022 Nuclear transport rece 29.9 6.8E+02 0.015 26.4 14.1 135 173-316 481-621 (982)
410 PF12397 U3snoRNP10: U3 small 29.4 2.4E+02 0.0053 21.0 10.0 70 117-190 7-76 (121)
411 KOG4337 Microsomal triglycerid 29.4 6.1E+02 0.013 25.6 19.5 37 30-85 335-371 (896)
412 PF14666 RICTOR_M: Rapamycin-i 29.1 3.7E+02 0.008 23.0 12.9 130 257-399 78-225 (226)
413 KOG2085 Serine/threonine prote 27.8 5.3E+02 0.011 24.4 13.1 78 109-188 170-248 (457)
414 PLN03205 ATR interacting prote 27.6 3.2E+02 0.007 25.6 7.4 114 286-400 324-447 (652)
415 cd03565 VHS_Tom1 VHS domain fa 27.5 3E+02 0.0065 21.5 10.6 74 160-233 39-117 (141)
416 PF03752 ALF: Short repeats of 27.3 1.4E+02 0.0031 17.7 4.3 36 375-414 4-39 (43)
417 PF01465 GRIP: GRIP domain; I 27.0 1.5E+02 0.0033 17.9 4.3 33 289-321 11-43 (46)
418 cd01882 BMS1 Bms1. Bms1 is an 26.9 23 0.00049 30.3 0.2 23 28-50 11-33 (225)
419 PF14631 FancD2: Fanconi anaem 26.5 4.3E+02 0.0094 29.9 9.5 129 212-347 445-573 (1426)
420 COG5095 TAF6 Transcription ini 26.4 3.7E+02 0.0081 24.1 7.3 145 118-273 199-360 (450)
421 PF14868 DUF4487: Domain of un 25.8 4.5E+02 0.0098 26.2 8.6 62 213-274 491-554 (559)
422 PF14631 FancD2: Fanconi anaem 25.1 4.6E+02 0.01 29.7 9.4 136 116-259 431-570 (1426)
423 KOG2005 26S proteasome regulat 24.7 7.6E+02 0.016 25.2 15.1 64 287-358 642-705 (878)
424 KOG2213 Apoptosis inhibitor 5/ 24.1 6.1E+02 0.013 23.9 20.3 249 73-337 25-289 (460)
425 PF07571 DUF1546: Protein of u 24.0 2.7E+02 0.0059 19.8 5.5 57 214-270 18-76 (92)
426 cd07064 AlkD_like_1 A new stru 23.5 4.5E+02 0.0097 22.1 8.2 75 288-370 118-192 (208)
427 KOG0803 Predicted E3 ubiquitin 22.7 6.5E+02 0.014 28.1 9.7 111 287-399 43-153 (1312)
428 PF06436 Pneumovirus_M2: Pneum 22.3 1.4E+02 0.003 22.9 3.5 62 351-412 27-88 (157)
429 KOG1877 Putative transmembrane 22.1 1E+02 0.0022 31.7 3.6 103 273-381 45-151 (819)
430 KOG2011 Sister chromatid cohes 21.9 6.5E+02 0.014 27.2 9.2 131 256-395 300-431 (1048)
431 PF14868 DUF4487: Domain of un 21.3 3.5E+02 0.0077 26.9 7.0 77 328-404 480-557 (559)
432 PF15573 Imm27: Immunity prote 21.2 1.6E+02 0.0034 25.0 3.9 73 161-253 48-121 (259)
433 cd03562 CID CID (CTD-Interacti 21.0 3.5E+02 0.0075 19.9 6.8 87 214-309 17-103 (114)
434 PF08454 RIH_assoc: RyR and IP 20.9 3.6E+02 0.0077 20.0 7.4 40 341-380 66-106 (109)
435 KOG2073 SAP family cell cycle 20.9 1E+03 0.022 25.2 14.7 79 152-230 183-269 (838)
436 TIGR00117 acnB aconitate hydra 20.4 4.1E+02 0.009 27.8 7.4 97 287-396 27-123 (844)
437 PF04821 TIMELESS: Timeless pr 20.2 6E+02 0.013 22.4 13.7 66 341-406 133-215 (266)
438 PF08623 TIP120: TATA-binding 20.0 4.8E+02 0.01 21.2 7.8 77 215-295 40-116 (169)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-76 Score=497.15 Aligned_cols=406 Identities=57% Similarity=0.865 Sum_probs=373.6
Q ss_pred CCchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHhhhcC
Q 014864 7 SKADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS 84 (417)
Q Consensus 7 ~~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s 84 (417)
..++.|+.+||. | +.++|+||+|+++++||||+||+|.|.||||.....+..+.+ ..+..++.-..+|.+.+.|.|
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l~S 82 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQLFS 82 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHHhh
Confidence 478899999998 4 889999999999999999999999999999973221111111 112222222468999999999
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHH
Q 014864 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164 (417)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 164 (417)
+|.+.|..|...+|++++.+.+|+++.++++|++|.+++++.+.....++++|+|+|+|+++++..++..+++.|++|.+
T Consensus 83 dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlf 162 (526)
T COG5064 83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF 162 (526)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHH
Confidence 99999999999999999999999999999999999999999654447899999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-chhHHHHHHHHHhhhhcCC-CCCChhhhh
Q 014864 165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQVS 242 (417)
Q Consensus 165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~a~~~l~~l~~~~-~~~~~~~~~ 242 (417)
+++|.+++.+++++++|+|+|++++++.+|+.+++.|++++++.++..+. +..+.+++.|+|+|||+++ |.+.+..+.
T Consensus 163 iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is 242 (526)
T COG5064 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS 242 (526)
T ss_pred HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999995443 5799999999999999998 888888999
Q ss_pred chHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014864 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (417)
Q Consensus 243 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 322 (417)
..+|.|.+++.+.|+++..+|||+++||++++.+.++.+++.|+.++|+.+|.+++..++.+|++.+||+++|++.+++.
T Consensus 243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-
Q 014864 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG- 401 (417)
Q Consensus 323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~- 401 (417)
+++.|+++.+..+|.++ ...+|++|||+++||++|+.++++++++.+++|.|+.+|+..+++++++|||++.|...++
T Consensus 323 iI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred heecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999 8899999999999999999999999999999999999999999999999999999999997
Q ss_pred -CHHHHHHHHhcCcc
Q 014864 402 -THEQIKYEHTFCTI 415 (417)
Q Consensus 402 -~~~~~~~l~~~g~i 415 (417)
-+++++||+++|-|
T Consensus 402 ~~PD~iryLv~qG~I 416 (526)
T COG5064 402 NRPDIIRYLVSQGFI 416 (526)
T ss_pred CCchHHHHHHHccch
Confidence 57999999999975
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-73 Score=515.57 Aligned_cols=403 Identities=67% Similarity=1.005 Sum_probs=371.8
Q ss_pred chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHhhhcCCCh
Q 014864 9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS 87 (417)
Q Consensus 9 ~~~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~ 87 (417)
...|+++||+ +++++|+||||++..+|+||+||+|.+.|||+..++.. ...............+..+..+.|+++
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~ 80 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELM----LDELLSDSQSQASNLELMLAALYSDDP 80 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcc----cccccchhHHHhhhhHHHHHHHhCCCH
Confidence 3456677776 79999999999999999999999999999999222111 111122222233447888999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (417)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (417)
..+..+...++++++.+.+|+++.++..|++|.|+++|...+++.++++|+|+|+|++++++++++.+++.|++|.|+.+
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L 160 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL 160 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence 99999999999999999889999999999999999999877669999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHH
Q 014864 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP 246 (417)
Q Consensus 168 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~ 246 (417)
+.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|
T Consensus 161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999965555689999999999999999 8889999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (417)
Q Consensus 247 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 326 (417)
.|..++++.|++|+.++||+++||+++.++.++.+++.|+++.|+.+|.+.++.++.+|++++||+++|++.+++.+++.
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (417)
Q Consensus 327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 406 (417)
|++|.|..++..++...++++|||+++||++|++++++.+++.|++|.|+.+|+.+++++|++|+|+++|++.+|+++|+
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 99999999999554778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcc
Q 014864 407 KYEHTFCTI 415 (417)
Q Consensus 407 ~~l~~~g~i 415 (417)
.||++.|-|
T Consensus 401 ~yLv~~giI 409 (514)
T KOG0166|consen 401 KYLVEQGII 409 (514)
T ss_pred HHHHHcCCc
Confidence 999999954
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-44 Score=325.85 Aligned_cols=325 Identities=28% Similarity=0.445 Sum_probs=297.1
Q ss_pred cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.+|.+++.|.. .++.+|+.|+++|.+++++. .+..+.+++.|.+|.|+.++.+++ .+++.+|+|+|+|++.+++..
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999985 56999999999999999987 788888999999999999999999 999999999999999999999
Q ss_pred HHHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
+..+++.|+++.|+.++..++. .+..++.|+|.|+|.+....-..-.-..+++.|..++ .+.|+++...++|++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987665 7889999999999976522222223344789999999 9999999999999999999
Q ss_pred cCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHH
Q 014864 231 RGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT 308 (417)
Q Consensus 231 ~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~ 308 (417)
.+.+... .....+++|.|+.+|.++++.++..++++++|++.+++...+.+++.|+++.|..++. ++...++..|||+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 8874443 4444899999999999999999999999999999999999999999999999999999 5567799999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIK 387 (417)
Q Consensus 309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 387 (417)
|+||+.|+.++++.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.++++|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 99999999999999997 789999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014864 388 KEAAWAISNATSGG 401 (417)
Q Consensus 388 ~~a~~~L~nl~~~~ 401 (417)
..++.+|.|+...+
T Consensus 425 ~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 425 LVALDGLENILKVG 438 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-43 Score=297.27 Aligned_cols=328 Identities=26% Similarity=0.378 Sum_probs=292.4
Q ss_pred ccCHHHHHhhhc-CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 72 ~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
-+.+|.+++++. .+..-.++.|+++|.+++++. ....+.++++|.+|.++++|.+++ .+++.+++|+|+|++.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence 378999999995 466778999999999999987 677777899999999999999999 89999999999999999999
Q ss_pred hHHHHHhCCChhHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 151 HTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
.+..+++.|++..++.++.+. +..+...+.|+|+|+|++...--+.-.-...++.|.+++ .+.|+++...|+|++++
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence 999999999999999999874 458899999999999965321111111223688899998 88899999999999999
Q ss_pred hhcCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHH
Q 014864 229 FCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (417)
Q Consensus 229 l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~ 307 (417)
|+.++.......+ .++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|+++...++..|||
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 9998644333333 677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHhccCCH
Q 014864 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEF 384 (417)
Q Consensus 308 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~ 384 (417)
+|+|+..|+.++++.+++.+++|+|+.+|.+. +..++++|||+++|.+++ .|+.++++++.|+|..|+++|...+.
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 99999999999999999999999999999998 999999999999999974 68999999999999999999999888
Q ss_pred HHHHHHHHHHHHhhCCCCH
Q 014864 385 DIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 385 ~v~~~a~~~L~nl~~~~~~ 403 (417)
++-+-++.++.|+...|..
T Consensus 429 kiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 429 KIIEVALDAIENILKVGEQ 447 (526)
T ss_pred cchhhhHHHHHHHHhhhhH
Confidence 8999999999999888743
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=8.4e-37 Score=315.30 Aligned_cols=337 Identities=20% Similarity=0.203 Sum_probs=288.0
Q ss_pred ccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
-+.++.+++.|.++++..|..|+..+.+++... .+..+.+++.|++|.|+++|.+++++.+|++|+|+|++++.+++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 378999999999999999999999998887654 4578889999999999999987654799999999999999999999
Q ss_pred HHHHHhCCChhHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------HHH---HHHhcCCHHHHHH
Q 014864 152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRD---LVLSQGGLVPLLA 208 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~---~~~~~g~i~~L~~ 208 (417)
++.+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .++ .....|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998654 34699999999999987543 222 1244578888888
Q ss_pred HhcCCCchhHH----HHHHHHHhhhhcCC-CCCChhh-------------------hhchHHHHHHhhcCCChHHHHHHH
Q 014864 209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFDQ-------------------VSPALPALAHLIHSNDDEVLTDAC 264 (417)
Q Consensus 209 ll~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~L~~ll~~~~~~v~~~a~ 264 (417)
++ +.++...+ ..++|+|.+|++++ |...... ..++++.|+.++...+.+++.+++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 88 44444333 36789999999986 3331211 135677889999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhH
Q 014864 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (417)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 344 (417)
|+|.+++.++++..+.+.+.|+++.|+.+|.+++..++..|+++|++++.++++++..++++|++|.|+++|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q 014864 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHT 411 (417)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 411 (417)
+++|+|+|+|++.++++....+.+.|+++.|+++|+++++++++.|+|+|.|++..++.++++.+++
T Consensus 505 qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~ 571 (2102)
T PLN03200 505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA 571 (2102)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 9999999999999655444444478999999999999999999999999999998888777766553
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=297.53 Aligned_cols=337 Identities=19% Similarity=0.173 Sum_probs=299.2
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
++++.++.+|...+.+.|..++++|..++.++ +..++.+.+.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788899999999999999999999997664 677888999999999999999988 8999999999999999888999
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+++..+..+...|++++|++++ .+.+...+..++|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888999999999999 667899999999999999743
Q ss_pred CCCC---------------------------------Ch-----hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864 233 KPQP---------------------------------PF-----DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 233 ~~~~---------------------------------~~-----~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 274 (417)
.... .. ....+++|.|..++.++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 2110 00 012478999999999999999999999999999999
Q ss_pred hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
.+..+.++..|+++.++.+|.+.+.+++..++++|++++.+.. .+...+++.|++++|+++|++. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 9988899999999999999999999999999999999996444 5556678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHH-HHHHHhcCc
Q 014864 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-IKYEHTFCT 414 (417)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~l~~~g~ 414 (417)
|++.. ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+.+.++ +...+...|
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g 780 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG 780 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence 99986 4456667788999999999999999999999999999999988776 544444444
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.1e-29 Score=210.50 Aligned_cols=322 Identities=21% Similarity=0.308 Sum_probs=284.3
Q ss_pred ccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
.+++..+.++-++.|..+|..++.+|.++... .++.+.++..|.+|.|++++++++ +++|+.++.++++++-+ ...
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~~ 241 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RRA 241 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HHH
Confidence 36788888877889999999999999998643 688899999999999999999999 99999999999999985 778
Q ss_pred HHHHHhCC--ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 152 TKVVIDHG--AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 152 ~~~i~~~g--~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
++.+.+.+ .+|.|+.++.+++++++-+|..+|+|++.+.. ++..+.+.|.+|.+++++ +++..........++.|+
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNI 319 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhc
Confidence 88888887 99999999999999999999999999999887 667788999999999999 777777778888899999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864 230 CRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (417)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~ 308 (417)
+-.+-+.......|++..|+.+|...| ++++..+..+|.+|+.........+.++|.+|.+..++.+....++...-.+
T Consensus 320 sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac 399 (550)
T KOG4224|consen 320 SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC 399 (550)
T ss_pred ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence 998766667777899999999998775 5599999999999998788888899999999999999999999999999899
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------CCCHHHHHHHhccC
Q 014864 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE------ANIIGPLVALLENA 382 (417)
Q Consensus 309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~~L~~~l~~~ 382 (417)
++.++.... ....+.+.|++|.|+.++.+. +.+++-+|+-+|.|+++.-. +...+++ .|+-..|++++.++
T Consensus 400 ~a~Lal~d~-~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~-~YarviEawd~P~~gi~g~L~Rfl~S~ 476 (550)
T KOG4224|consen 400 IAQLALNDN-DKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVE-HYARVIEAWDHPVQGIQGRLARFLASH 476 (550)
T ss_pred HHHHHhccc-cHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 988886544 456689999999999999999 99999999999999998533 3333332 57778999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCC
Q 014864 383 EFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 383 ~~~v~~~a~~~L~nl~~~~~ 402 (417)
+..++..+.|++..+....+
T Consensus 477 ~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 477 ELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999988754
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-29 Score=212.62 Aligned_cols=331 Identities=20% Similarity=0.245 Sum_probs=290.9
Q ss_pred hccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
.+.++..++..+.++...+|..++.++.+++.. +.+.-.+...|.+.++..+-++.+ ..+|..++.+|.|++.. .+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hh
Confidence 456788888888888889999999999999865 566667889999999999878877 89999999999999874 89
Q ss_pred hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
+++.++..|++|.|+.++++.+..+++.|+.+++||+.+.. .|+.+.+.+ .++.|++++ ++.++.++-.|..+|.|
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998776 688888888 899999999 88999999999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC-hhhHHHHHH
Q 014864 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR 307 (417)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~v~~~a~~ 307 (417)
++.+..........+.+|.++++|+++..........|+.|++.++-. ...+.++|++..|+.+|...+ .+++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 999865555566689999999999988777777788899999876543 346789999999999999876 569999999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387 (417)
Q Consensus 308 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 387 (417)
+|.|++.........+.+.|.+|.+..++.++ ...++.+...+++.++.. ......+.+.|++|.|+....+...+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888888899999999999999998 889999988888888764 4456788899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 388 KEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 388 ~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
-+|+.+|.|++. +.++...+++.
T Consensus 435 gNaAaAL~Nlss--~v~~YarviEa 457 (550)
T KOG4224|consen 435 GNAAAALINLSS--DVEHYARVIEA 457 (550)
T ss_pred ccHHHHHHhhhh--hhHHHHHHHHH
Confidence 999999999988 45666666653
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=3.9e-21 Score=184.82 Aligned_cols=325 Identities=18% Similarity=0.193 Sum_probs=269.2
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.++.|++.|.+++.++...++..|.++... .++...|.+.|+++.|+.++.+++ .+++..++++|.|++.+ ++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence 6789999999999999999999999998544 577888999999999999999988 89999999999999996 8889
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+.. +|..+...++++.+++++...+++.+...+++.+.|++..
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999864 456779999999998765 8899999999999999987777888888899999999998
Q ss_pred CCCCChhhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHH
Q 014864 233 KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~ 310 (417)
+.........++++.|+...-. .|+- .+..+.|++.+++.....+. +++..|+..+... +++....++.+|+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 7666555556788888876543 3433 34688999988754444333 3677788887765 5789999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHHH
Q 014864 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIK 387 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~ 387 (417)
|+...+......+.+.+++|.+.++|..+. .+++.-+++.++|.++. ++.....+.+.|+++.|+++|.. .|.++.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 999876666665667899999999997652 45789999999999986 46777788899999999999975 478999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHhcC
Q 014864 388 KEAAWAISNATSGGTHEQIKYEHTFC 413 (417)
Q Consensus 388 ~~a~~~L~nl~~~~~~~~~~~l~~~g 413 (417)
.+.++++..+..+. +.+..+++..
T Consensus 596 lQil~~f~~ll~h~--~tr~~ll~~~ 619 (708)
T PF05804_consen 596 LQILYVFYQLLFHE--ETREVLLKET 619 (708)
T ss_pred HHHHHHHHHHHcCh--HHHHHHHhcc
Confidence 99999999999974 4455665543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=4.4e-20 Score=177.66 Aligned_cols=321 Identities=18% Similarity=0.150 Sum_probs=257.3
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 155 (417)
.++-..+... ..+...|+..|.+++.. ......+.+.|+++.|+.+|++++ .++...++.+|.+++.. .+++..+
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEM 327 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 3344444443 44556788889998753 455566899999999999999988 89999999999999986 7899999
Q ss_pred HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC
Q 014864 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (417)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~ 235 (417)
.+.|+++.|++++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.++. ++..+..++.+|++++..+..
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999998876 7999999999999999994 234667799999999998765
Q ss_pred CChhhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
.......+++|.+++++.+ +++.+...+++.+.|++.... ..+.+.+.++++.|+........ ...+..+.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence 5555667899999987644 567777788999999987664 55788888899999988655432 234568888888
Q ss_pred CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHH
Q 014864 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAW 392 (417)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~ 392 (417)
+++.....+. +++..|..++..+.+++...++..+|+|++..+.+..+.+.+.+++|.|.+.|..+ +.++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7754333232 47778888888876889999999999999976555555666789999999999754 5689999999
Q ss_pred HHHHhhCCCCHHHHHHHHhcC
Q 014864 393 AISNATSGGTHEQIKYEHTFC 413 (417)
Q Consensus 393 ~L~nl~~~~~~~~~~~l~~~g 413 (417)
.++.++. +++....+.+.|
T Consensus 558 ~~gtla~--d~~~A~lL~~sg 576 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSG 576 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCC
Confidence 9999987 667777776655
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-17 Score=155.19 Aligned_cols=334 Identities=21% Similarity=0.287 Sum_probs=265.3
Q ss_pred CHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
.+.+|++.|... |+..|.+|+..++.+++....+....+--.-++|.|+.+|++..+.++...|+++|++++..-|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 457888888875 9999999999999998876444444444555799999999998889999999999999999989999
Q ss_pred HHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
..+++.++||.|+.-|.. ...++.++++.+|-.|+...+ ..++..|++...+..+ +--...+++.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999986654 778899999999999998877 4678999999999998 77788999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHhhcCCCC----hhhHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPS----PSVLIP 304 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~~l~~~~----~~v~~~ 304 (417)
.-+...+..+...+|.|..+|...|.+..+.+|-++.+++++ .++..+.+...|.+....+++.-.. ..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 888888888899999999999999999999999999999764 5677788899999999999987543 355677
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-------------chhHHHHHHHH--------------------
Q 014864 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------------KKSIKKEACWT-------------------- 351 (417)
Q Consensus 305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------------~~~v~~~a~~~-------------------- 351 (417)
.++.+.-++++++-....++..++...+..+|.... .|.-..+....
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 888888888888877766777777777776664321 01000000000
Q ss_pred ----------------------------HHHHhc--------------------------CCHHHHHHHHHCCCHHHHHH
Q 014864 352 ----------------------------VSNITA--------------------------GNREQIQAVIEANIIGPLVA 377 (417)
Q Consensus 352 ----------------------------L~nl~~--------------------------~~~~~~~~l~~~~~i~~L~~ 377 (417)
.+.+.. ..|+-.+.++. .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 001110 11222333332 57899999
Q ss_pred Hhcc-CCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 378 LLEN-AEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 378 ~l~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
+..+ .++.||..++.+|..++...+.+.+..++.+
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~ 598 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKN 598 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhc
Confidence 9875 4899999999999999999999999888765
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.80 E-value=9.3e-18 Score=158.07 Aligned_cols=337 Identities=20% Similarity=0.236 Sum_probs=255.6
Q ss_pred hccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
+...+++.+.+|.+.++.+|-.|+..+..+..++ +.....+.+.|.|+.||.+|.+.. .+++.+|+++|.|+..++..
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKST 308 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCC
Confidence 3357899999999999999999999998886554 666667889999999999999999 99999999999999998765
Q ss_pred --hHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-CC------------C
Q 014864 151 --HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQ------------P 214 (417)
Q Consensus 151 --~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~------------~ 214 (417)
++-.+.+.++|+.++.+|.. .|.++++....+|+||++.+. ++..++.. .+..|...+. .. .
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHH-HHHHHHHhhcccccccCCCCcccccc
Confidence 88889999999999999996 899999999999999998844 55555544 5666655442 11 1
Q ss_pred chhHHHHHHHHHhhhhcCCCC--CChhhhhchHHHHHHhhcC------CChHHHHHHHHHHHHhccCChH-----HH---
Q 014864 215 KLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTND-----KI--- 278 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~-----~~--- 278 (417)
+.++..+++.+|.|++..... ...-...|.+..|+..+++ .|..-.++++..+.||+..-.. ..
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~ 466 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL 466 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence 367889999999999985421 2223346778887777652 3566677888888888643220 00
Q ss_pred -----------------------HH----------------------HHHcCChHHHHhhcC-CCChhhHHHHHHHHHHh
Q 014864 279 -----------------------QA----------------------VIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNI 312 (417)
Q Consensus 279 -----------------------~~----------------------~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l 312 (417)
.. +....++..-..+|. +.++.+.+.++.+|-|+
T Consensus 467 ~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNl 546 (717)
T KOG1048|consen 467 ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNL 546 (717)
T ss_pred hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhh
Confidence 00 000011122122222 34567789999999999
Q ss_pred hcCChH----HHHHH-HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-----
Q 014864 313 VTGDDM----QTQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA----- 382 (417)
Q Consensus 313 ~~~~~~----~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~----- 382 (417)
+.+... ....+ .++.++|.|+++|+.. +..+.+.++.+|.|++.+ . ..+.++..++++.|++.|.+.
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~-rnk~ligk~a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-I-RNKELIGKYAIPDLVRCLPGSGPSTS 623 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-c-hhhhhhhcchHHHHHHhCcCCCCCcC
Confidence 987752 23333 5789999999999999 999999999999999985 2 234556678999999999754
Q ss_pred -CHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864 383 -EFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI 415 (417)
Q Consensus 383 -~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i 415 (417)
+.++...+|.+|.|++.. +....+.+.+.+|+
T Consensus 624 ~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~ 656 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGI 656 (717)
T ss_pred chHHHHHHHHHhHHHHHHH-hHHHHHHHHhccCh
Confidence 368999999999999976 77888899988886
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=2.8e-15 Score=143.10 Aligned_cols=339 Identities=18% Similarity=0.201 Sum_probs=255.2
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.++.++..+.++|..+...|+..|.++++. .+..+.+++.+.++.|..++...+ +.+|..+..++.+++..+++..
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHH
Confidence 5678899999999999999999999999864 456667888899999999999877 7999999999999999999999
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-ch---h-HHHHHHHHHh
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KL---S-MLRNATWTLS 227 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~---~-~~~~a~~~l~ 227 (417)
..+.+.|+++.++..+.++|.-++..++.+|..++. .+...+.+.+.|+++.|..++.... |+ . ..-..+.++.
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999 5557888999999999999995443 22 1 3344556777
Q ss_pred hhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc-C----ChHHHHhhcCCCChhhH
Q 014864 228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-G----VFPRLAEFLMHPSPSVL 302 (417)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~----~~~~L~~~l~~~~~~v~ 302 (417)
+++...|.........++..+..++.+.|+..+..|+.+++.++...++..-...+. + ++..+.....+...+++
T Consensus 275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 888764444444445666777788888999999999999999986665543321333 2 34555555666778899
Q ss_pred HHHHHHHHHhhcCChH-HH-------HHH---HHcCChH-HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HC
Q 014864 303 IPALRTVGNIVTGDDM-QT-------QCV---IEYQALP-CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EA 369 (417)
Q Consensus 303 ~~a~~~L~~l~~~~~~-~~-------~~~---~~~~~l~-~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~ 369 (417)
..++.+++++...... .. ... +..+-.. .+..+++.+ -+++|..+..+|..++.... ..+.+. ..
T Consensus 355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~~W-g~~~i~~~~ 432 (503)
T PF10508_consen 355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQPW-GQREICSSP 432 (503)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcCHH-HHHHHHhCc
Confidence 9999999999543332 11 111 1234444 788889888 89999999999999998744 444455 56
Q ss_pred CCHHHHHHHhccCCH---HHHHHHHHHHHHhhC-----CCCHH---HHHHHHhcCccCC
Q 014864 370 NIIGPLVALLENAEF---DIKKEAAWAISNATS-----GGTHE---QIKYEHTFCTIFI 417 (417)
Q Consensus 370 ~~i~~L~~~l~~~~~---~v~~~a~~~L~nl~~-----~~~~~---~~~~l~~~g~i~~ 417 (417)
|+++.|++--.+.+. +.|...+.+|.+... .++++ .++..++.|.+|+
T Consensus 433 gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~~~~~~~~~~~~~~kL~~yv~eGpy~v 491 (503)
T PF10508_consen 433 GFIEYLLDRSTETTKEGKEAKYDIIKALAKSSTNASSVFDDPEYLGKLQEYVREGPYYV 491 (503)
T ss_pred cHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcCCCHHHHHHHHHHHHcCCccc
Confidence 777776665443332 455666666663322 12444 4488889999885
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=2.7e-15 Score=143.21 Aligned_cols=334 Identities=17% Similarity=0.190 Sum_probs=257.7
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
..+.+...|.++++.++..+++.+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~ 154 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE 154 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence 4577788889999999999999999987543 444666778999999999999999 89999999999999986 56667
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+++.+.++.|..++..+++.++-.+..++.+++..++.....+...|+++.++..+ +++|.-++.+++.++..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence 788888899999999988889999999999999999999999999999999999999 6689999999999999999966
Q ss_pred CCCChhhhhchHHHHHHhhcCC--Ch---H-HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHH
Q 014864 234 PQPPFDQVSPALPALAHLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~--~~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~ 307 (417)
.........++++.|..++... |+ . .....+...++++...+..+-... ..++..+..++.+.++..+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence 5555566689999999999654 33 1 223344667777764433322222 236677788888999999999999
Q ss_pred HHHHhhcCChHHHHHH-HHc-----CChHHHHHhhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHH----H---HCC
Q 014864 308 TVGNIVTGDDMQTQCV-IEY-----QALPCLLNLLSGNYKKSIKKEACWTVSNITAG----NREQIQAV----I---EAN 370 (417)
Q Consensus 308 ~L~~l~~~~~~~~~~~-~~~-----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l----~---~~~ 370 (417)
++|.+++..+. ...+ ... .++..+.....++ ..++|..+..+++++... ..+.+..+ + ..+
T Consensus 313 tlg~igst~~G-~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~ 390 (503)
T PF10508_consen 313 TLGQIGSTVEG-KQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS 390 (503)
T ss_pred HHHHHhCCHHH-HHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence 99999965543 3333 322 2345555556666 778999999999999542 12222111 1 234
Q ss_pred CHH-HHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCccC
Q 014864 371 IIG-PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIF 416 (417)
Q Consensus 371 ~i~-~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i~ 416 (417)
-.. .++.+++.+=+++|..+...|..++.+. -.+..++...|++
T Consensus 391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~--Wg~~~i~~~~gfi 435 (503)
T PF10508_consen 391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQP--WGQREICSSPGFI 435 (503)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHhcCH--HHHHHHHhCccHH
Confidence 445 7788888777999999999999999863 4456677777653
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.9e-15 Score=128.43 Aligned_cols=310 Identities=13% Similarity=0.136 Sum_probs=248.5
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (417)
+++...-..++.+|..+..+. ..+.+..++..++.+|.... +.++....+.++..-|.....+++.+++.++.+
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 456666667777766664332 22456677888888887432 367888888888888888889999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 163 IFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 163 ~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
.+...|.. +...+...+.|++.-+..+++ +....+...|++..|+..+.-..++.+...++.+|..|+-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99977764 445678889999999886643 34466788888999999997677899999999999999987
Q ss_pred CCCCChhhhhchHHHHHHhhcCCC-hH---HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC--CCChhhHHHHH
Q 014864 233 KPQPPFDQVSPALPALAHLIHSND-DE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPAL 306 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~-~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~ 306 (417)
+.........|++..|++++.+.+ .. ....++..|..|+ ++++....+++.|+.+.++.++. +++|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 666666677899999999998743 33 4466778888887 55566778999999999999875 45789999999
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHH
Q 014864 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD 385 (417)
Q Consensus 307 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~ 385 (417)
.+++-++-..++....+++.|+-...+..++.. ....++++|||.+.|++..+.++...++. ..++.|+......++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHET 430 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCcc
Confidence 999999999998888899999999988888754 35689999999999999988888877776 5678888888888889
Q ss_pred HHHHHHHHHHHhhCC
Q 014864 386 IKKEAAWAISNATSG 400 (417)
Q Consensus 386 v~~~a~~~L~nl~~~ 400 (417)
+...|..+|..+-..
T Consensus 431 ce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 431 CEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999888664
No 16
>PRK09687 putative lyase; Provisional
Probab=99.73 E-value=1.7e-15 Score=132.92 Aligned_cols=254 Identities=16% Similarity=0.109 Sum_probs=200.2
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.++.|++.|.+++..++..|+..|..+-. ..+++.+..++.+++ +.+|..++++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 46889999999999999999999987631 124777888888888 99999999999998653211
Q ss_pred HHHhCCChhHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 154 ~i~~~g~i~~L~~l-l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
...+++.|..+ ++++++.|+..++.+|++++...... ...++..+...+ .++++.++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11356777776 67889999999999999996543311 111344555666 67789999999999976542
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
...++.|+.++.++++.|+..++.+|+.+...++. +++.|+..+.+.++.++..|+++||.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 35789999999999999999999999998433332 467799999999999999999999996
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc-cCCHHHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA 391 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~ 391 (417)
-. + .++|.|++.++++ + ++..++.+|+++.. + ..+|.|..++. ++|..++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence 42 2 3588999999976 4 78899999999854 3 36888999996 78999999999
Q ss_pred HHHHH
Q 014864 392 WAISN 396 (417)
Q Consensus 392 ~~L~n 396 (417)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 99853
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1e-14 Score=124.10 Aligned_cols=292 Identities=16% Similarity=0.157 Sum_probs=232.3
Q ss_pred HhCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 014864 114 RSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAG 188 (417)
Q Consensus 114 ~~g~i~~Lv~lL---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~ 188 (417)
..|..+.++..+ .+++ ..+...++.+|..+..+.|. +.+..+...++.+|.. ++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 445555544433 3445 78889999999999887665 4567788899998864 677888888888888888
Q ss_pred CCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-Ch---------hhhhchHHHHHHhhcCC-Ch
Q 014864 189 DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PF---------DQVSPALPALAHLIHSN-DD 257 (417)
Q Consensus 189 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-~~---------~~~~~~l~~L~~ll~~~-~~ 257 (417)
..+.+|+.+++.++++.+.+.+.......+.+.++|++..|..++... .+ ..-.+++..|++.+.-. ||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988877777789999999999998876221 11 11245677888888654 79
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC-hh---hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 014864 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PS---VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (417)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 333 (417)
.+....+.+|..|+-.+ +..+.+.+.|++..|+.++.+.+ .. ....++..|..++ |+++....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence 99999999999998654 56677999999999999998743 33 3456777777776 5666777789999999998
Q ss_pred Hhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864 334 NLLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKYEH 410 (417)
Q Consensus 334 ~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~l~ 410 (417)
.++. +..+|.|..+++-+++-++-.+|++-..+++.|+-...++.|+..+ ..++++|||.+.|++.. +.++...++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence 8864 3348899999999999999989999999999999999999998653 58999999999999998 456666666
Q ss_pred hcC
Q 014864 411 TFC 413 (417)
Q Consensus 411 ~~g 413 (417)
.+|
T Consensus 414 ~~G 416 (461)
T KOG4199|consen 414 ANG 416 (461)
T ss_pred hcc
Confidence 655
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.69 E-value=2e-15 Score=142.54 Aligned_cols=282 Identities=21% Similarity=0.219 Sum_probs=221.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--HHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRD 195 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~~ 195 (417)
+|..+.+|.+.+ +.+|-.|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+++|.||..+... .+-
T Consensus 235 lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 788899999988 89999999999999999999999999999999999999999999999999999999976554 778
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC--------------ChHHHH
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--------------DDEVLT 261 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--------------~~~v~~ 261 (417)
.+.+.++++.+++++....|.++++.+..+|+||+..+ ......+...++.|..-+-.+ +.++..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 88999999999999977789999999999999999983 334445566777766544211 356888
Q ss_pred HHHHHHHHhccCChHHHHHHHH-cCChHHHHhhcCC------CChhhHHHHHHHHHHhhcCChH----------------
Q 014864 262 DACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDM---------------- 318 (417)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~-~~~~~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~---------------- 318 (417)
++..||.|++....+..+.+.+ .|.+..|+..+++ .+.+...+++.++.|+...-..
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 9999999999877666666655 4889999888762 3455667777777777642220
Q ss_pred ---------------HHHH----------------------HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864 319 ---------------QTQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (417)
Q Consensus 319 ---------------~~~~----------------------~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (417)
.... +....++..-..++....++.+.+.++.+|-|++++...
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 0000 111233444445555444788999999999999986432
Q ss_pred ----HHHHH-HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 362 ----QIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 362 ----~~~~l-~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
....+ ....+++.|+++|..++.++.+.++.+|.|++...
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 22333 46789999999999999999999999999999864
No 19
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=1.1e-14 Score=127.67 Aligned_cols=228 Identities=12% Similarity=0.079 Sum_probs=181.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
-++.|..+|.+.+ ..++..|+++|..+... .+++.+..++.++++.++..++++|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3788999999988 89999999999987642 4677888899999999999999999998543221
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 276 (417)
....++.|..++..++++.++..++.+|++++...+.. ....++.+...+.++++.|+..++++|+.+. ++
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DE- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CH-
Confidence 11246677777668889999999999999997653222 1235666777788889999999999998764 21
Q ss_pred HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 277 ~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
..++.|+.+|.++++.++..|+.+||.+..+++ ..++.|+..+.+. ++.||..|+++|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 157889999999999999999999999954443 2466789999988 9999999999999963
Q ss_pred cCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
. + .++|.|++.|.+++ ++..|+.+|+++-..
T Consensus 221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 2 3 46889999998766 678899999998653
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.67 E-value=5.3e-15 Score=129.68 Aligned_cols=312 Identities=14% Similarity=0.099 Sum_probs=226.3
Q ss_pred CChHHHHHHHHHHHHhhhCC--CCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864 85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (417)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (417)
.+..+...+..++.+....+ ++.....-+..+++..|.+..++++ .++..+..++|+|+|.++.+.+..+.+.|+-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 34455666666666664322 1222333467788899999999987 89999999999999999999999999999988
Q ss_pred HHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCC
Q 014864 163 IFVKLLYS-------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 163 ~L~~ll~~-------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
.++.+|+. .+.+....+...|.|..-++.+.+..+++.|+++.|...+. ..++....+.....+.|+..-..
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88887764 23567778889999999999999999999999999998873 23455555555554444443221
Q ss_pred --CCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-CC-------hhhHH
Q 014864 235 --QPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-------PSVLI 303 (417)
Q Consensus 235 --~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-~~-------~~v~~ 303 (417)
..++.........+++++.+. .+++.+-+...+.+.++++.-. -.+.+.|.+..++.+++. ++ .....
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 122222234444566666443 5667777788888888766543 346778899999988875 21 12334
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-
Q 014864 304 PALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN- 381 (417)
Q Consensus 304 ~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~- 381 (417)
.++....-+..|++... .+...+ +++.+..++.+. +....-.+..+++|+++.+. ...++++.+++..|++++..
T Consensus 292 ~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~ 368 (604)
T KOG4500|consen 292 RIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQE 368 (604)
T ss_pred hhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666666543 355544 899999999999 99999999999999998755 55577788999999999853
Q ss_pred ----CCHHHHHHHHHHHHHhhCCC
Q 014864 382 ----AEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 382 ----~~~~v~~~a~~~L~nl~~~~ 401 (417)
++.+++..++.+|.|++.-.
T Consensus 369 ~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 369 KDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred cCCCccchhHHHHHHHHHhccccC
Confidence 57899999999999998864
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=2.9e-14 Score=140.93 Aligned_cols=336 Identities=19% Similarity=0.171 Sum_probs=247.0
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhCCCch
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~ 150 (417)
++...++.++...|. ..-.+.|..+.+. ....-.+...|.+|.|+++|.-++ ..+.+..|-.+|.||....++
T Consensus 197 ets~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 197 ETSNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred hhhhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 344566666666665 3444555555332 344556889999999999997554 367899999999999997776
Q ss_pred hHHHHHhCCChhHHH----------HhhCC-----CCHHHHH---HHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-
Q 014864 151 HTKVVIDHGAVPIFV----------KLLYS-----PSDDVRE---QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN- 211 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~----------~ll~~-----~~~~i~~---~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~- 211 (417)
....=.+.-++..|- .++.. .+..+.. .|+.+|..++.+ ++.|..+-+.|++..+-.++.
T Consensus 272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~v 350 (2195)
T KOG2122|consen 272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQV 350 (2195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHH
Confidence 544333322222221 12221 1222222 455666666554 558999999999999988773
Q ss_pred ----------CCCchhHHHHHHHHHhhhhcCCCC--CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH-H
Q 014864 212 ----------GQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-I 278 (417)
Q Consensus 212 ----------~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-~ 278 (417)
+.....+++++..+|.||..++.. .......+++.+++..|.+..+++..-.+..|.||+...+.. .
T Consensus 351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK 430 (2195)
T KOG2122|consen 351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK 430 (2195)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence 112456899999999999998733 334555899999999999888888888899999999766544 3
Q ss_pred HHHHHcCChHHHHhh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCC---chhHHHHHHHHHH
Q 014864 279 QAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNY---KKSIKKEACWTVS 353 (417)
Q Consensus 279 ~~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~---~~~v~~~a~~~L~ 353 (417)
..+.+.|-+..|+.+ |...........+.+|.||+.++.++...+.. .|.+.+|+.+|.... .-.+.+.|..+|.
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 445556777777766 44555677888999999999888777666654 499999999997652 4577888888998
Q ss_pred HHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864 354 NITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI 415 (417)
Q Consensus 354 nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i 415 (417)
|+.. .+.++++.+.+.+++..|+..|++....+..++|.+|+||... +++..++|.+.|.+
T Consensus 511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv 574 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAV 574 (2195)
T ss_pred HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccH
Confidence 8875 5778888899999999999999999999999999999999988 66777888887754
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=5.1e-15 Score=146.16 Aligned_cols=266 Identities=19% Similarity=0.175 Sum_probs=223.9
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-----------CHHHHHHHHHHHHHHhCCCchhHHHHHh-CC
Q 014864 92 ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVID-HG 159 (417)
Q Consensus 92 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g 159 (417)
.|+..|-++ +.+ .++...|.+.|++..+-+++.-+. +-.++..|..+|+||..|+..++..+.. .|
T Consensus 317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 567777776 443 788999999999999988876321 2468999999999999998777766654 49
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhh-CCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC--CCC
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQP 236 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~--~~~ 236 (417)
++..++..|.+..+++....+.+|.||+ .-+...++.+-+.|.+..|.........+..+..++.+||||+.+. ...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 9999999999988899999999999998 4444577888899999999998878888889999999999999876 334
Q ss_pred ChhhhhchHHHHHHhhcCC----ChHHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864 237 PFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (417)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 309 (417)
.+..+.|++..|+.+|... --.+++.+-.+|.|++. ..+...+.+.+..++..|++.|++.+..+..++|.+|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 5666799999999999654 24567777777777643 3455667888999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 014864 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (417)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (417)
.||...+++..+++++.|.++.|..++.+. +..+-.-++.+|.|+....|
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999999999 99999999999999987654
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=5.7e-15 Score=135.84 Aligned_cols=322 Identities=18% Similarity=0.198 Sum_probs=217.4
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCC--------CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIER--------SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNI 144 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~--------~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l 144 (417)
+.+|.|.+.|.++|...+.-|..+|.++..... +.+... .+|.++++.++++ +.+|..|+.|+..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~-----mipkfl~f~~h~s-pkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNI-----MIPKFLQFFKHPS-PKIRSHAVGCVNQF 201 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHH-----hHHHHHHHHhCCC-hhHHHHHHhhhhhe
Confidence 457888899999999999999999999864420 122222 4899999999998 99999999999888
Q ss_pred hCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864 145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (417)
Q Consensus 145 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~ 224 (417)
.-..+.....-++ ..++.+..+-.+.+++++.+.+.++.-+....+.- -.---.++++.+++.. ++.|+.+.-.||.
T Consensus 202 i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t-qd~dE~VALEACE 278 (885)
T KOG2023|consen 202 IIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT-QDVDENVALEACE 278 (885)
T ss_pred eecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc-cCcchhHHHHHHH
Confidence 7654444333333 46777888888899999999999999998665531 1111123566777776 7788889999999
Q ss_pred HHhhhhcCCCCCChh----hhhchHHHHHHhhcCCChH--HHH-------------------------------------
Q 014864 225 TLSNFCRGKPQPPFD----QVSPALPALAHLIHSNDDE--VLT------------------------------------- 261 (417)
Q Consensus 225 ~l~~l~~~~~~~~~~----~~~~~l~~L~~ll~~~~~~--v~~------------------------------------- 261 (417)
++..++..+ .... .....+|.|+.-+..++.+ +..
T Consensus 279 Fwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdd 356 (885)
T KOG2023|consen 279 FWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDD 356 (885)
T ss_pred HHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccc
Confidence 999999885 2222 3355666665533211100 000
Q ss_pred ---------HHHHHHHHhccCChHHHHHHHHcC----ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864 262 ---------DACWALSYLSDGTNDKIQAVIEAG----VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (417)
Q Consensus 262 ---------~a~~~l~~l~~~~~~~~~~~~~~~----~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 328 (417)
..-|-|..++...-+...-+.... ++|.|-..|.++++.+++.++.++|.++.|.-...-.- -..+
T Consensus 357 dDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeL 435 (885)
T KOG2023|consen 357 DDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPEL 435 (885)
T ss_pred ccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHH
Confidence 001222222221111112222233 34555555678889999999999999998775332111 1247
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (417)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 406 (417)
+|.++.+|.+. .+-||.-+||+|+..+.- +.+.-+++. .++..|++.+-+++.+|++.||.++..+-..+..+.+
T Consensus 436 ip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV 512 (885)
T KOG2023|consen 436 IPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV 512 (885)
T ss_pred HHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH
Confidence 89999999999 999999999999999751 111112222 2455566666678999999999999999888877666
Q ss_pred HHH
Q 014864 407 KYE 409 (417)
Q Consensus 407 ~~l 409 (417)
+++
T Consensus 513 p~l 515 (885)
T KOG2023|consen 513 PYL 515 (885)
T ss_pred HHH
Confidence 654
No 24
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4e-13 Score=131.65 Aligned_cols=327 Identities=18% Similarity=0.199 Sum_probs=235.1
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc---hh
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---EH 151 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~---~~ 151 (417)
++-+.+..+|+++..|..|+..|..+...-.+.....+ ..+.+.|.+.+.+++ ..++..|+++++.++...+ ..
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s-~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPS-SPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHhccchHH
Confidence 34444455789999999999999988654322222111 124777888888888 4599999999999887543 33
Q ss_pred HHHHHhCCChhHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC-CCchhHHHHHHHHH
Q 014864 152 TKVVIDHGAVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTL 226 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~a~~~l 226 (417)
...+. ..+|.++..+. .++......++.+|..++...+.+-...+.. ++...+.+... +-+..++..|+.++
T Consensus 197 ~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 197 VDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33333 35666666554 4667777888888888887766554443332 45555555532 23677777777777
Q ss_pred hhhhcCCCCCC----------------------------------------------------------hhhhhchHHHH
Q 014864 227 SNFCRGKPQPP----------------------------------------------------------FDQVSPALPAL 248 (417)
Q Consensus 227 ~~l~~~~~~~~----------------------------------------------------------~~~~~~~l~~L 248 (417)
..+++..|... .......++.+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l 353 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEAL 353 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHH
Confidence 76665421000 00012445566
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (417)
Q Consensus 249 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 328 (417)
-.++.+++..-+..++.+|+.++.+..+.....++. +++.+++.|.++++.||-.||.++|.+++.-....+.-....+
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l 432 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERL 432 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence 677888999999999999999999988766554444 8888999999999999999999999999988877777778889
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHH-HHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIG-PLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (417)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~-~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 406 (417)
+|.|+..+.+..+++|+..|+.++.|+...++ +.+....+ +++. .+..++.++.+.++..++.+|+..+..+...++
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~ 511 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI 511 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999998888999999999999998544 44444443 5666 444555678899999999999999988766666
Q ss_pred HHH
Q 014864 407 KYE 409 (417)
Q Consensus 407 ~~l 409 (417)
+|+
T Consensus 512 pY~ 514 (1075)
T KOG2171|consen 512 PYF 514 (1075)
T ss_pred hHH
Confidence 664
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=1.1e-13 Score=118.53 Aligned_cols=196 Identities=18% Similarity=0.228 Sum_probs=163.4
Q ss_pred HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (417)
Q Consensus 113 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (417)
.+.+-++.|+.+|+...+|.++..+..++++.+.. +.....+.+.|+++.+..++.++++.++..|+++|.|++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 45666899999999766599999999999998774 8889999999999999999999999999999999999998766
Q ss_pred HHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864 193 CRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 271 (417)
.+..+-. .++.++..+... -+..++..++.+|.+|+..... ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444432 467777755343 4789999999999999876322 3344678999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHHHhhcC
Q 014864 272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG 315 (417)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~ 315 (417)
.++. ....++.+.++..++.++... +.++...++..+.||..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 7665 456788888999999999876 578889999999999643
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=1.5e-13 Score=117.87 Aligned_cols=227 Identities=20% Similarity=0.267 Sum_probs=177.5
Q ss_pred HhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 156 IDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 156 ~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
.+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ +++++.++..|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence 455778999999985 78999999999999987765 4899999999999999999 88999999999999999998754
Q ss_pred CCChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 235 QPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
+.. .+...++.+.+.+.+. |..++..++.+|.+|+..++. +.++. +.++.++.+|..++..++..++++|.|+
T Consensus 87 n~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 333 3355677777655443 788999999999999866543 23332 4689999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CH-----------HHHHHHH-HC-CCHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NR-----------EQIQAVI-EA-NIIGPLVA 377 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~-----------~~~~~l~-~~-~~i~~L~~ 377 (417)
+...+ .+..++.++++..++.+++...+.++...+.+.+.||..+ .+ +....++ +. .+...|..
T Consensus 162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 97655 4556888899999999999876788899999999999642 11 1111222 22 25566666
Q ss_pred HhccCCHHHHHHH
Q 014864 378 LLENAEFDIKKEA 390 (417)
Q Consensus 378 ~l~~~~~~v~~~a 390 (417)
+..++|++||..+
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 7777777777653
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.60 E-value=5.1e-14 Score=108.62 Aligned_cols=118 Identities=34% Similarity=0.505 Sum_probs=110.7
Q ss_pred HHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 014864 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (417)
Q Consensus 281 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (417)
+++.|+++.++.++.++++.++..++++|++++...+.....+.+.|+++.+..++.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999999888888889999999999999998 99999999999999999887
Q ss_pred HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 361 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
.....+.+.|+++.|++++.+.+.+++..++|+|.|++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 778888899999999999999999999999999999863
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.59 E-value=1.1e-12 Score=134.21 Aligned_cols=244 Identities=19% Similarity=0.211 Sum_probs=174.0
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.++.|++.|.++|+.++..|+..|..+.. .+.++.|+..|++++ +.++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence 56788999999999999999999987631 235889999998888 899999999998885421
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
...+.|...|.++++.++..++.+|+.+.... ...++..+ .++++.++..++.+|..+-.
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence 12356777888888899999988888764221 23456666 77788888888888876521
Q ss_pred CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~ 313 (417)
.+.|..++.++++.|+..++.+|+.+..... ..++.|..++.++++.+|..|+.+|+.+.
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 1335666777788888888888877754321 12566777777777888888888887774
Q ss_pred cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHH
Q 014864 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA 393 (417)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~ 393 (417)
.... ..+.+...|.++ ++.||..|+++|+.+.. + ..++.|+.+|.+++..||..|+++
T Consensus 804 ~~~~----------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 804 CPPD----------DVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred Ccch----------hHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHHHHH
Confidence 3211 123466667776 77777777777776532 1 235677777777777777777777
Q ss_pred HHHh
Q 014864 394 ISNA 397 (417)
Q Consensus 394 L~nl 397 (417)
|+.+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 7775
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.58 E-value=9.1e-14 Score=107.23 Aligned_cols=119 Identities=35% Similarity=0.611 Sum_probs=111.1
Q ss_pred HHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 014864 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (417)
Q Consensus 111 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 190 (417)
.+++.|+++.|++++.+++ +.++..++++|.+++.++++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999988 899999999999999998999999999999999999999999999999999999999988
Q ss_pred chHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 191 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
+..+..+...|+++.+++++ ++.+..+++.++|++.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87888889999999999999 67789999999999999874
No 30
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.57 E-value=2.2e-12 Score=113.51 Aligned_cols=324 Identities=12% Similarity=0.061 Sum_probs=247.6
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----D--YPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~--~~~~~~~a~~~L~~l~~ 146 (417)
+.++.+.+...|+|.++-.++.++|.++.... ++.+..+.+.|+-..++..|+.- + +.+.-.-+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677777888888999999999999998765 88899999999977777777642 1 24566667788999999
Q ss_pred CCchhHHHHHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHH
Q 014864 147 GTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (417)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~ 223 (417)
++.+.+..+.+.|+++.|...+. -.+....+.+....+|+.+- .+...+...+......+++++.....+++.+.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 99999999999999999988775 36777788888877777643 2223455566677788999997777889999999
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhcC-CC-------hHHHHHHHHHHHHhccCChHHHHHHHHcC-ChHHHHhhc
Q 014864 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL 294 (417)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~-------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~~l 294 (417)
..+...+..+.........|.+..+..+++. .+ -.....++....-+..+++.. +.+...+ +++.+..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence 9999999887555555557778888888754 21 223334444444455566554 4455555 899999999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 014864 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (417)
Q Consensus 295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (417)
.+++......+.-+|||+++.++..++ +++.+++..|+.++... .+.+++..++.+|.|+.---+ +...++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~-~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQ-LVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHH-HHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccc
Confidence 999999999999999999988776655 78889999999998642 156788899999999986322 345667889
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 371 IIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
+.+.++..++...|.+...-...+.=+..+
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 999999999988888877777776655443
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.55 E-value=3.6e-12 Score=130.44 Aligned_cols=245 Identities=21% Similarity=0.250 Sum_probs=195.7
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.++.|+..|.++++.++..|+..|..+.... + ..+.|...|++++ +.++..|+.+|..+..+
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--~---------~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~----- 714 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL--P---------PAPALRDHLGSPD-PVVRAAALDVLRALRAG----- 714 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--C---------chHHHHHHhcCCC-HHHHHHHHHHHHhhccC-----
Confidence 45788999999999999999999998875321 1 1356778888887 89999999999987542
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
....|+..|.++++.++..|+.+|+.+- ..+.|+..+ .++++.++..++.+|..+...
T Consensus 715 -------~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 715 -------DAALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAA-TDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred -------CHHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHh-cCCCHHHHHHHHHHHHHhccc
Confidence 2346778899999999999999999862 123456667 888999999999999998765
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.+ ..++.|..++.++|+.|+..++.+|+.+..... +.+.+...|.++++.+|..|+.+|+.+
T Consensus 773 ~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 773 GA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred cc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 32 237788899999999999999999998853211 235588889999999999999999987
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 392 (417)
.. + ..++.|..+|+++ ++.||..|+++|+.+ .+++. ..+.|...+++.+.+||..|..
T Consensus 835 ~~--~---------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~---------a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 835 AA--D---------VAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPA---------ARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred cc--c---------chHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHH---------HHHHHHHHHhCCCHHHHHHHHH
Confidence 52 1 2358899999999 999999999999997 33343 3567778899999999999999
Q ss_pred HHHH
Q 014864 393 AISN 396 (417)
Q Consensus 393 ~L~n 396 (417)
+|..
T Consensus 893 aL~~ 896 (897)
T PRK13800 893 ALAH 896 (897)
T ss_pred HHhh
Confidence 9863
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4.9e-12 Score=124.24 Aligned_cols=323 Identities=17% Similarity=0.171 Sum_probs=223.8
Q ss_pred HHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 76 PVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 76 ~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
..++..+.+ ..+.++..-+..+..+++..-+..|.. +++.|.+..++++ +..|+.|+.+|..+...-......
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 455665555 557788888888888877653334544 4888999999999 899999999999998743332221
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh-cCCHHHHHHHhc---CCCchhHHHHHHHHHhhhh
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~ 230 (417)
.+. ...+.|.+.+.+++..++..++.+++.++...+......-. ...+|.++..+. +..|......+..+|..+.
T Consensus 156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 111 34566666777776669999999999998554322222211 124566666653 3456666778888888888
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChHHHH-----------------------------
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ----------------------------- 279 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~----------------------------- 279 (417)
...|.........++........+. ++.++..|+..+..++...+...+
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 7765544444455555555555443 456666666655555433111100
Q ss_pred ----------------HHHH------------cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 014864 280 ----------------AVIE------------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331 (417)
Q Consensus 280 ----------------~~~~------------~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 331 (417)
..++ .-+++.+-.++++.++.-|..++.+|+.++.|+.+.....+ ..+++.
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~ 393 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI 393 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence 0000 01234555667788889999999999999999998776533 378899
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864 332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIK 407 (417)
Q Consensus 332 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~ 407 (417)
++..|+++ ++.||..||.+++.++..-...++.-...-+++.|+..+.+. +++++..|+.++.|+...+..+.+.
T Consensus 394 Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 394 VLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred HHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999 999999999999999987666777777778888999999865 6799999999999999988765553
No 33
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.8e-11 Score=109.29 Aligned_cols=326 Identities=13% Similarity=0.143 Sum_probs=240.3
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
-+..+++.|..++.++.......|.++... .++...|.+.|++..|+.++...+ ++++..++..+.|++.+ ...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence 467889999988888888778888877443 577888999999999999999998 99999999999999986 77888
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.++..|.+|.+..++.+... ...|+..+..++.++. ++..+....+++.+.+.+....+..+-...+....|+|...
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 89999999999999986432 3457778888877765 78888888899998887767777777666666677777665
Q ss_pred CCCChhhhhc-------------------------------------hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCh
Q 014864 234 PQPPFDQVSP-------------------------------------ALPALAHLIHSN-DDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 234 ~~~~~~~~~~-------------------------------------~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~ 275 (417)
.+.+...... .+..|...+..+ ++.....++.++++|.-.+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 4333221111 122222223222 45567788888888876555
Q ss_pred HHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTV 352 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L 352 (417)
+-...+-+...+|.+-..|... ..++....+-.+|..+.... ....+..+++++.++++|+..+ +.++.....++.
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~-cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLD-CARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhH-HHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 5556667778899998888754 34566677777777775443 3333556799999999998653 566777778888
Q ss_pred HHHhcCCHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864 353 SNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYE 409 (417)
Q Consensus 353 ~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l 409 (417)
-.+..+ ......++ +...-..|++++++.+.++|+-+-.+|--++.+ +.+..+.+
T Consensus 617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~-d~EWAKrI 672 (791)
T KOG1222|consen 617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH-DKEWAKRI 672 (791)
T ss_pred HHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 888775 44455555 455666899999999999999999999888876 44544443
No 34
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.52 E-value=3.9e-15 Score=107.49 Aligned_cols=91 Identities=43% Similarity=0.618 Sum_probs=60.2
Q ss_pred CCCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCc-cC-CCCCc-hhhhccCHHHHHh
Q 014864 5 PNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA-ND-VNAPG-TAKKLENLPVMVA 80 (417)
Q Consensus 5 ~~~~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~-~~-~~~~~-~~~~~~~l~~l~~ 80 (417)
.+...+.|++.||+ |+|++|+|+||++..++|||+||+|.|.|||++........+ .. ..... .......++.++.
T Consensus 2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 81 (97)
T PF01749_consen 2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVA 81 (97)
T ss_dssp -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHH
T ss_pred CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHH
Confidence 34577899999999 699999999999999999999999999999998654333211 11 11111 1222246788999
Q ss_pred hhcCCChHHHHHHHH
Q 014864 81 GVWSNDSGVQYECTT 95 (417)
Q Consensus 81 ~l~s~~~~~~~~a~~ 95 (417)
.+.|+|+..|+.|..
T Consensus 82 ~v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 82 GVNSDDPEVQLEATQ 96 (97)
T ss_dssp HHTSSCHHHHHHHHH
T ss_pred hcCCCCHHHHHHhhC
Confidence 999999999999875
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.1e-12 Score=120.99 Aligned_cols=273 Identities=15% Similarity=0.180 Sum_probs=197.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC----CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (417)
++|.|+++|.+++ ...+.-|..+|..++.++++..+.-... -.+|.++.+.+++++.+|..|+.++..+.-..+.
T Consensus 129 lLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred HHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 5999999999998 6889999999999999877655442211 3579999999999999999999999988765543
Q ss_pred HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 272 (417)
.-..-++. +++.+..+. .+.+++++++.|.++..|....|........++++.++...++.|++|.-.||.....++.
T Consensus 208 al~~~iD~-Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 208 ALYVHIDK-FLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHH-HHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 22222222 456666666 7889999999999999999987777667778889999998899999999999998888887
Q ss_pred CChHHHHHHHHc---CChHHHHhhcCCC----------------------------------------------------
Q 014864 273 GTNDKIQAVIEA---GVFPRLAEFLMHP---------------------------------------------------- 297 (417)
Q Consensus 273 ~~~~~~~~~~~~---~~~~~L~~~l~~~---------------------------------------------------- 297 (417)
.+. . ..++.. .++|.|+.-+...
T Consensus 286 qpi-~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 286 QPI-C-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred CcC-c-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 652 1 122221 2444444333211
Q ss_pred ----ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHCCCH
Q 014864 298 ----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEANII 372 (417)
Q Consensus 298 ----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i 372 (417)
++.+|...+.+|.-++.--... ++ .-++|.|-..|.+. ++.+|+.+..+||.|+.|+.+.. +.+ ..++
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~~e---lL-~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L--peLi 436 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFGDE---LL-PILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL--PELI 436 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhHHH---HH-HHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch--HHHH
Confidence 0344554444444443221111 11 12456666667777 99999999999999999754322 222 1478
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 373 GPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 373 ~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
|.|+.+|.+.-+-||.-.||+|+.++...
T Consensus 437 p~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 437 PFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 99999999999999999999999987764
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.49 E-value=7.3e-11 Score=107.89 Aligned_cols=322 Identities=12% Similarity=0.083 Sum_probs=224.6
Q ss_pred CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHh-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q 014864 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (417)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-----g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~ 147 (417)
....++..+.. ...++....+..+..++... +.....+.+. +....++.+|..++ .-+...|+.+|+.+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 34666777764 55677777888888887763 3334445543 56778888998887 78999999999999875
Q ss_pred CchhHHHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-chhHHHHHHHH
Q 014864 148 TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT 225 (417)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~a~~~ 225 (417)
++.........-.++.|...+.++ +...+..|+.+|..+....+ +|..+.+.++++.|+.++.... +..++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 443211111111334455555543 46778888999999987776 8998989999999999996545 67899999999
Q ss_pred HhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCC------hHHHHHHHHcCChHHHHhhcCCC-
Q 014864 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMHP- 297 (417)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~~~~L~~~l~~~- 297 (417)
++-|+...+........+.++.++.++... -+++..-++.++.|+...+ ......+++.|+.+ ++..|...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK 289 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence 999998765333334468999999999765 5778888899999998743 22345567777655 44444432
Q ss_pred --ChhhHHHHHHHHHHh--------hcC--------------Ch---------HHHHHHHH--cCChHHHHHhhcCCCch
Q 014864 298 --SPSVLIPALRTVGNI--------VTG--------------DD---------MQTQCVIE--YQALPCLLNLLSGNYKK 342 (417)
Q Consensus 298 --~~~v~~~a~~~L~~l--------~~~--------------~~---------~~~~~~~~--~~~l~~L~~ll~~~~~~ 342 (417)
|+++.. .+..|... ++. ++ +....+-+ ..++..|+.+|..+.++
T Consensus 290 ~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 290 YDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 333321 11111111 110 01 11111222 25567899999655488
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
.+..-||.=+|.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..+
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 8889999999999998787777777889999999999999999999999999887653
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.46 E-value=5.2e-11 Score=110.41 Aligned_cols=338 Identities=15% Similarity=0.198 Sum_probs=225.9
Q ss_pred cCHHHHHhhhcCCC-hHHHHHHHHHHHHhhhCCCC-CcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
..++.++++|.+.| .......+++++.+++..+. +.........+++.+..+++.+. ......-+....+++. .+.
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-k~~~~l~~~~~a~~s~-~~~ 172 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-KYISRLDVSRAAHLSS-TKD 172 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-hhhhhhhhhhhccccc-cch
Confidence 46788899998888 78888899999999887522 22233445556777777776333 2333333444444444 467
Q ss_pred hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHH---HhhCCCchHHH----HHHhcCCHHH-HHHHhcCCCchhHHHHH
Q 014864 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG---NIAGDSPRCRD----LVLSQGGLVP-LLAQLNGQPKLSMLRNA 222 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~---nl~~~~~~~~~----~~~~~g~i~~-L~~ll~~~~~~~~~~~a 222 (417)
+...+.+.|+.+.+.-++...+...+.+|+.++. ++..+++.... .....|+.+. .+..+.++++...+-.+
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 7777788888888888887778899999999999 77766664332 2334444442 34444466666666777
Q ss_pred HHHHhhhhcCC----CCCCh----hh--------------------------------------------hhchHHHHHH
Q 014864 223 TWTLSNFCRGK----PQPPF----DQ--------------------------------------------VSPALPALAH 250 (417)
Q Consensus 223 ~~~l~~l~~~~----~~~~~----~~--------------------------------------------~~~~l~~L~~ 250 (417)
+.++.++++.. +.+.. .. ....++.+.+
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e 332 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE 332 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence 77777666544 00000 00 0001111111
Q ss_pred hh----------------------------------------------------cCCChHHHHHHHHHHHHhccCChHHH
Q 014864 251 LI----------------------------------------------------HSNDDEVLTDACWALSYLSDGTNDKI 278 (417)
Q Consensus 251 ll----------------------------------------------------~~~~~~v~~~a~~~l~~l~~~~~~~~ 278 (417)
++ ...|..+...+|-++-+++..-..-.
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~ 412 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR 412 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11233344444444444432211111
Q ss_pred HHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 279 ~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
..+-..++...|++++..++..+...++.+|.|++.........++..|+++.+.+++.+. ++.+|..+.|+|.++..+
T Consensus 413 tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 413 TGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHLMFN 491 (678)
T ss_pred cCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhc
Confidence 1122236788999999999999999999999999988887888899999999999999999 999999999999999998
Q ss_pred CHHHHHHHHHCCC-HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864 359 NREQIQAVIEANI-IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCT 414 (417)
Q Consensus 359 ~~~~~~~l~~~~~-i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~ 414 (417)
+.+..+......+ ...+..+.+++++.|++.+...|.|++.. ..+.+.++++..+
T Consensus 492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~-~~~svdfll~~~~ 547 (678)
T KOG1293|consen 492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN-SRKSVDFLLEKFK 547 (678)
T ss_pred chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC-cHHHHHHHHHhhh
Confidence 7776665554444 45566677889999999999999999987 4566777776543
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.41 E-value=1.2e-10 Score=106.45 Aligned_cols=280 Identities=15% Similarity=0.116 Sum_probs=203.3
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
....++..|.++|..++..|+..+..+++.. ..........-+++.|...++++++...+..++.+|..+... ++.+.
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 4577788888899999999999999998753 222111111123456666776654467888899999999885 88888
Q ss_pred HHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
.+.+.++++.|+.+|.. .+..++..++.+++-++.+.+ ........+.++.++.++..+..+.+.+-++.++.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 89888999999999975 356899999999999997766 455666788999999999888899999999999999998
Q ss_pred CCC----CC--ChhhhhchHHHHHHhhcC---CChHHHHHHHHHH-------HHhcc------------------C-Ch-
Q 014864 232 GKP----QP--PFDQVSPALPALAHLIHS---NDDEVLTDACWAL-------SYLSD------------------G-TN- 275 (417)
Q Consensus 232 ~~~----~~--~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~l-------~~l~~------------------~-~~- 275 (417)
... .. ....+...++.++..|.. .|+++..+.-..- ..++. + ++
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 641 11 112234345555555543 3666544322211 11111 0 00
Q ss_pred ---HHHHHHHHc--CChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHH
Q 014864 276 ---DKIQAVIEA--GVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349 (417)
Q Consensus 276 ---~~~~~~~~~--~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 349 (417)
++...+-+. .++..|+.+|. ++++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 122233332 34678899985 56788888999999999999988777677789999999999999 999999999
Q ss_pred HHHHHHhc
Q 014864 350 WTVSNITA 357 (417)
Q Consensus 350 ~~L~nl~~ 357 (417)
.++..+..
T Consensus 418 ~avQklm~ 425 (429)
T cd00256 418 LAVQKLMV 425 (429)
T ss_pred HHHHHHHH
Confidence 99988754
No 39
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.3e-11 Score=113.17 Aligned_cols=320 Identities=18% Similarity=0.221 Sum_probs=216.4
Q ss_pred cCHHHHHhhhc----CCCh-HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVW----SNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~----s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~ 146 (417)
..+|.++..|. .+.+ .++..++.++..+...- .|..-.--.+.++..+++-.. ...+..+|..|+.+|.|-..
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 34566666554 3333 47788889988875432 333222224455666666444 33347899999999998665
Q ss_pred CCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHH
Q 014864 147 GTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (417)
Q Consensus 147 ~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (417)
....+...-.+ +-++...+..-.+++.+++..|..+|..|..-.-++-..-+....+..-+.-+ .+++.++.-.+...
T Consensus 204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF 282 (859)
T KOG1241|consen 204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF 282 (859)
T ss_pred HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence 32222111111 23445666667789999999999999999865444444444444455556666 68899999999999
Q ss_pred HhhhhcCCC-------------CCC--h----hhhhchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHHHH
Q 014864 226 LSNFCRGKP-------------QPP--F----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQ 279 (417)
Q Consensus 226 l~~l~~~~~-------------~~~--~----~~~~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~ 279 (417)
++++|...- .++ . .....++|.|+++|... +......+-.||.-++....+
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D--- 359 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD--- 359 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---
Confidence 999986421 111 1 12246788888888541 223444454555554433222
Q ss_pred HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 359 (417)
.++. .++|.+-.-++++++.-+..|+.++|.+..+.+......+..+++|.++.++.++ .-.++..+.|+++.++...
T Consensus 360 ~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 360 DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence 1222 3677777788899999999999999999999998887788889999999999987 8899999999999999876
Q ss_pred HHHHHHH-HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 360 REQIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 360 ~~~~~~l-~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
++.+..- .....++.++.-|. ++|++..++||++.+|+..
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA 478 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH
Confidence 6543222 23455666666665 4789999999999999844
No 40
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=6.5e-10 Score=99.59 Aligned_cols=304 Identities=16% Similarity=0.118 Sum_probs=215.7
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHH
Q 014864 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (417)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 165 (417)
.+.+-..|+..|.+++.. -..-..|...+++..|+..|..++ .++...+...|..++-. .+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence 455666677888888643 233345889999999999999988 89999999999999875 77888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 014864 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (417)
Q Consensus 166 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 245 (417)
+++...+++++...+..+.|++.++. .|..++..|.+|.+..++.++... .-|+..++.++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999998876 778888999999999999544433 34566677777765444444456777
Q ss_pred HHHHHhhcC-CChHHHHHHHH--------------------------------------HHHHhccCChHHHHHHHHcCC
Q 014864 246 PALAHLIHS-NDDEVLTDACW--------------------------------------ALSYLSDGTNDKIQAVIEAGV 286 (417)
Q Consensus 246 ~~L~~ll~~-~~~~v~~~a~~--------------------------------------~l~~l~~~~~~~~~~~~~~~~ 286 (417)
+.+.+.+-+ .+.+|-...+. .+.+++.+.......+++ .
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y 505 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y 505 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence 776665432 23333222222 222233222222222222 2
Q ss_pred hHHHHhhcCCC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHH
Q 014864 287 FPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQ 364 (417)
Q Consensus 287 ~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~ 364 (417)
+..|...++.. +......++.+++|+...+-...+.+.+.+++|.+-..|+.+. ..++.-....+++.++.. .....
T Consensus 506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~ 584 (791)
T KOG1222|consen 506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR 584 (791)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH
Confidence 44455555543 4567788999999998766666666677899999999998763 345677777777877664 34455
Q ss_pred HHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhCC
Q 014864 365 AVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 365 ~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~~ 400 (417)
.+..+++++.|+++|+. .+.+.....++++..+..+
T Consensus 585 Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred HhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 56678999999999974 3566777777777776664
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.38 E-value=1.1e-09 Score=107.84 Aligned_cols=295 Identities=17% Similarity=0.092 Sum_probs=206.7
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.+..+.+.|.+.+...+..|++.+....... .+. +.+.+..+.++.+++ .+++.-+.-.+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 45677888888888888888887666554432 221 124677788888888 8999999999999988655542
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
- -+++.|.+=+.++++.++..|+.+|++|-... .-+. .+.++.+.+ .+.++.+++.|+.++..+...
T Consensus 104 l-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 L-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred H-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 2 24677888888999999999999999984321 1121 456677777 788999999999999999886
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.|. .....+.++.|..+|.+.|+.|..+|+.+|..+....+.... ...+.+..|+..+..-++-.+...+..|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 553 223356788899999999999999999999999765544332 2344567788888766666777777777553
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAA 391 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~ 391 (417)
.-.++... ..++..+...|++. ++.|.-+|+.++.++... +++.+..+.. .+.+.|+.++ +.+++++.-++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHH
Confidence 32222221 24677788889998 899999999999998753 2333333221 2334455553 45566777776
Q ss_pred HHHHHhhCC
Q 014864 392 WAISNATSG 400 (417)
Q Consensus 392 ~~L~nl~~~ 400 (417)
..|.-++..
T Consensus 319 r~I~~i~~~ 327 (746)
T PTZ00429 319 KNIHALLVI 327 (746)
T ss_pred HHHHHHHHH
Confidence 666555443
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.37 E-value=3.5e-11 Score=117.61 Aligned_cols=293 Identities=20% Similarity=0.187 Sum_probs=192.1
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
...+.+++.+.++|...+..+--.+..+.... +..-.+ ++..+.+=|.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 56788899989999988888888777775432 222222 3677777788888 8999999999999884 4444
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
. ..++.+..++.++++.+|..|+.++..+....|.. +... .++.+.+++ .++++.++..|+.++..+ ..
T Consensus 113 ~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 E-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp H-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred h-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 3 34677888888999999999999999998665542 2222 477788888 778899999999999888 22
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.+..........++.|.+++...++..+..++..+..++......... ..+++.+..++.+.++.+...++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 211111334555666666667778888888888888887665544311 23556666666666677777777777666
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 392 (417)
..... .-..+++.+..++.++ ++.+|..++..|..++...+.... .....+..+..+++..+|..++.
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence 54333 1223466677777766 677777777777777664432221 11112222222556666666666
Q ss_pred HHHHhhCC
Q 014864 393 AISNATSG 400 (417)
Q Consensus 393 ~L~nl~~~ 400 (417)
.|.+++..
T Consensus 327 lL~~l~~~ 334 (526)
T PF01602_consen 327 LLYKLANE 334 (526)
T ss_dssp HHHHH--H
T ss_pred HHhhcccc
Confidence 66666553
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.34 E-value=5.8e-09 Score=102.84 Aligned_cols=302 Identities=14% Similarity=0.101 Sum_probs=208.7
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
..++.+++.+.++|...+....-.+.+.+... +..-.+ +++.|.+=+++++ +.+|-.|+++|+++-. ++..
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence 35788899999999999999988888876432 222222 3778888888888 9999999999998866 3333
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
. -.++.+.+.+.+.++-|+..|+.++.++...+++ .+.+.|.++.|..++ .+.++.++.+|+.+|..++..
T Consensus 139 e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 E-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence 3 2456677888899999999999999999876663 445667888899988 889999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.|. ........+..++..+..-++..+...+.+|....-.++... ..++..+...|++.++.|...|++++-++
T Consensus 210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 553 234446666677777766677788888888866432222221 24678888999999999999999999888
Q ss_pred hcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH----H---------------------
Q 014864 313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA----V--------------------- 366 (417)
Q Consensus 313 ~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~----l--------------------- 366 (417)
....+ .....+. ..+.+.++.++ ++ +++++..++..+.-++...|..... +
T Consensus 284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L 360 (746)
T PTZ00429 284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL 360 (746)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence 75432 2222111 11224455553 34 5667766666665554433321111 0
Q ss_pred HH----CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 367 IE----ANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 367 ~~----~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
.+ ..++..|.+...+.+.+++..++.++++++..-
T Consensus 361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 00 013445555566667888888999988888753
No 44
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.34 E-value=7.4e-10 Score=102.92 Aligned_cols=326 Identities=15% Similarity=0.097 Sum_probs=211.7
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHH
Q 014864 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVI 156 (417)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~ 156 (417)
++..+...|++....|..-..+++.+. +++...+++.|.++.++.+++..+ .++.+.+.+.++.....++......+.
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 344455667777788888888888876 555557999999999999998654 367777888888999998888899999
Q ss_pred hCCChhHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchHHH--HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 157 DHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 157 ~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~--~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
+.+.++.|+.++.+++ ..+.+.++.++.++...++..-. ......++..+..++ ..+.....+.-+...+++|...
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence 9999999999999988 88999999999999866542211 111222333333333 3344444555555556666554
Q ss_pred CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH---HhccCChHHHH----HHHHcCChHH--HHhhcCCCChhhH--
Q 014864 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVFPR--LAEFLMHPSPSVL-- 302 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~---~l~~~~~~~~~----~~~~~~~~~~--L~~~l~~~~~~v~-- 302 (417)
.........++...+.-++......++..++.+++ .+..+++.... ...+.|+.++ +..++++++...+
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 22222233455555555555556666777777777 44444432221 1222233321 1122222221111
Q ss_pred --------------------------------------------------------------------------------
Q 014864 303 -------------------------------------------------------------------------------- 302 (417)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (417)
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence
Q ss_pred ---------------------------------------------------------------HHHHHHHHHhhcCChHH
Q 014864 303 ---------------------------------------------------------------IPALRTVGNIVTGDDMQ 319 (417)
Q Consensus 303 ---------------------------------------------------------------~~a~~~L~~l~~~~~~~ 319 (417)
.+||-++-+++..-...
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111100000
Q ss_pred HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
...+-...+..++++++..+ +..|+..+..+++|+.-...+....++..|+|..+..++.+.++.+|..+.|+|.++..
T Consensus 412 ~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 00001235667889999888 88999999999999998656667788899999999999999999999999999999999
Q ss_pred CCCHHHH
Q 014864 400 GGTHEQI 406 (417)
Q Consensus 400 ~~~~~~~ 406 (417)
.++....
T Consensus 491 ~~de~~k 497 (678)
T KOG1293|consen 491 NCDEEEK 497 (678)
T ss_pred cchHHHH
Confidence 8765443
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.32 E-value=4.4e-10 Score=109.91 Aligned_cols=289 Identities=20% Similarity=0.246 Sum_probs=216.6
Q ss_pred HHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 77 VMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 77 ~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
++.+.+.+. +...+..++..+..+.... .+ . ..+.+..+.++.+.+ ...+.-+.-.+..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~-~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YD-I-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CC-C-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444444 6777777777666654432 11 1 145888999999777 899999999999998876662222
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
++..+.+=|.++++.++..|+.++++++ .++.... .++.+.+++ .++++.+++.|+.++..+....|
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 4677888899999999999999999997 3322222 467788888 78889999999999999998754
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
... ... .++.+..++.++|+.+...|+.++..+ ..++.....++ ..+++.|..++...++-.+..+++.+..++.
T Consensus 147 ~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 321 112 689999999989999999999999998 33333211122 2356667777788899999999999999998
Q ss_pred CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (417)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L 394 (417)
..+..... ..+++.+..++++. ++.|..+++.++..+....+ .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 77755521 35678899999988 99999999999998876433 2225788999999999999999999999
Q ss_pred HHhhCCC
Q 014864 395 SNATSGG 401 (417)
Q Consensus 395 ~nl~~~~ 401 (417)
..++...
T Consensus 292 ~~l~~~~ 298 (526)
T PF01602_consen 292 SQLAQSN 298 (526)
T ss_dssp HHHCCHC
T ss_pred HHhhccc
Confidence 9998864
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.7e-10 Score=106.31 Aligned_cols=325 Identities=19% Similarity=0.190 Sum_probs=222.6
Q ss_pred HHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 76 PVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 76 ~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
..++..... ++..+++.|+.+|.+-+...+...-.+.-.+=+++..++.-+.++ .+++..|..||..|.+-..+...
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 467889999999988765432222333334446777788888888 89999999999999986666666
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH---------------HH---HHhcCCHHHHHHHhcC-CC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR---------------DL---VLSQGGLVPLLAQLNG-QP 214 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~---------------~~---~~~~g~i~~L~~ll~~-~~ 214 (417)
.......+..-+.-++++++++.-+++...+++|.+.-... .. -.-.+++|.|+++|.+ ++
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 66666677777888889999999999999999985321100 00 0122457778888853 22
Q ss_pred -----chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 014864 215 -----KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (417)
Q Consensus 215 -----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 289 (417)
+...-..|.-||.-++.... ......++|.+-.-++++|..-++.+..+++.+..+++...-.-+-.+.+|.
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ 410 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS 410 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence 23444555555544444321 1223466777777888899999999999999999888765555555678999
Q ss_pred HHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-----
Q 014864 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI----- 363 (417)
Q Consensus 290 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~----- 363 (417)
++.++.++...++..+.|++|.++...++.... ......++.++..|++ .|.+-.++||++.+++...++..
T Consensus 411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~q 488 (859)
T KOG1241|consen 411 IINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNGQ 488 (859)
T ss_pred HHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999888889999999999999877643321 2234667778888875 58999999999999984322110
Q ss_pred ----HHHHHCCCHHHHHHHhcc---CCHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864 364 ----QAVIEANIIGPLVALLEN---AEFDIKKEAAWAISNATSGGTHEQIK 407 (417)
Q Consensus 364 ----~~l~~~~~i~~L~~~l~~---~~~~v~~~a~~~L~nl~~~~~~~~~~ 407 (417)
...++ .++..|+..-+. .+..+|..|..+|..++..++.+...
T Consensus 489 t~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 489 TDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred CCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 01111 233344443332 35789999999999999987654433
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.6e-08 Score=95.94 Aligned_cols=325 Identities=18% Similarity=0.192 Sum_probs=243.0
Q ss_pred cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCc-
Q 014864 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS- 149 (417)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~- 149 (417)
+.++.|+..+.+ .-.+.+..|+..|..+. ..++..+...| ++.|++.|..+. ++++...++.++.++..+..
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s----rkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS----RKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH----HHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 688999998886 45789999999998875 24455555555 899999998653 58999999999999988642
Q ss_pred -----hh----------HHHH-HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhc-CCHHHHHHHhc
Q 014864 150 -----EH----------TKVV-IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQ-GGLVPLLAQLN 211 (417)
Q Consensus 150 -----~~----------~~~i-~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~-g~i~~L~~ll~ 211 (417)
.. .+.+ ...+.|..|+.++...|..||..++..|.++... +++.++.++.. -+|..++.++
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 11 1223 3457889999999999999999999999998754 45566666543 4688999999
Q ss_pred CCCchhHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhcCC---C-hHHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 014864 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQ-VSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (417)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~---~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (417)
.+..+.++-.++..|..+.++.+..+..+ ...++..|+.++... | .-|..+++..+.||..++..+.+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 78888899999999999999986665544 488899999999754 3 357889999999999998888888999999
Q ss_pred hHHHHhhcCCC---C-----hh-----hHHHHHHHHHHhhcCC------hHHHHHHHHcCChHHHHHhhcCCC-chhHHH
Q 014864 287 FPRLAEFLMHP---S-----PS-----VLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNY-KKSIKK 346 (417)
Q Consensus 287 ~~~L~~~l~~~---~-----~~-----v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~ 346 (417)
+|+|.++|.-. + |. -...++.++..++.-. ......+...+++..|..++-++. ..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 99999887532 2 11 1234566666665322 122234667899999999998873 568999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCC---------CHHH-HHHHh-ccCCHHHHHHHHHHHHHhhCCCCH
Q 014864 347 EACWTVSNITAGNREQIQAVIEAN---------IIGP-LVALL-ENAEFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~---------~i~~-L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~ 403 (417)
++..+++++..++......+.+.. .+-. ++.+. ....+..|..+.+++..+......
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence 999999999999887777665421 1112 22222 345789999999999998887543
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.25 E-value=1.2e-09 Score=96.51 Aligned_cols=280 Identities=14% Similarity=0.093 Sum_probs=203.2
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
.+.+++.|..+|......+.+.+.++++.. +....-....-....|...++++.+++....|++||-.+... ++.+..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 678888999999989888999999887654 222111000111334455566644467888899999999986 888888
Q ss_pred HHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 155 VIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 155 i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
++...++..++..+. ..+..++.+.+.+++-++.+++.. +.+...+.++.|..++..+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888999988883 367889999999999999887755 55688889999999998788999999999999999987
Q ss_pred CCCCCh------hhhhchHHHHHHhhcC---CChHHHHHHHHHHHHh-------ccCCh---------------------
Q 014864 233 KPQPPF------DQVSPALPALAHLIHS---NDDEVLTDACWALSYL-------SDGTN--------------------- 275 (417)
Q Consensus 233 ~~~~~~------~~~~~~l~~L~~ll~~---~~~~v~~~a~~~l~~l-------~~~~~--------------------- 275 (417)
.+.... ..+..-++..++.|.. +|+++..+.-..-..| +.-++
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 643321 1223334444444432 3666554433322222 21110
Q ss_pred --HHHHHHHHc--CChHHHHhhcCCC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHH
Q 014864 276 --DKIQAVIEA--GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350 (417)
Q Consensus 276 --~~~~~~~~~--~~~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 350 (417)
++...+.+. .++..|+.+|+.+ +|.+..-||.=||......|+....+.+.|+=..+++++.++ +++||.+|..
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 112222221 4577889999866 488889999999999999999988888999999999999999 9999999999
Q ss_pred HHHHHhcC
Q 014864 351 TVSNITAG 358 (417)
Q Consensus 351 ~L~nl~~~ 358 (417)
++-.+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 98877543
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-09 Score=94.75 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHH
Q 014864 130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (417)
Q Consensus 130 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~l 209 (417)
+.+-+..|+.-|-.++.. -++...++..|+...++.++++++..+|+.|+|+|+..+.++|..+..+++.|++..|+..
T Consensus 96 ~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 378889999999988885 7778888999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 014864 210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (417)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (417)
+..+.+...+..|+.+++.+.+..+.. ......++...|...+++ .+..++..++..+.++..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 977778888899999999999987443 334446679999999988 56778889999999998776665555666666
Q ss_pred hHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 287 FPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 287 ~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
-..+..+....+..+...++.++-.+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6677777777778888888877766554
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.8e-09 Score=102.84 Aligned_cols=260 Identities=18% Similarity=0.170 Sum_probs=204.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhC-CCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
+..|++-|....++..|.+|+.-|+.+.. ++.+....+--...+|.|+.+|+. .+.++..+|+++|.+++.--|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 55566666655338888888888887665 444444433334678999999986 6799999999999999988888888
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-C
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T 274 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~ 274 (417)
.+++.++|+.|+..|..-.-.++.+.++.+|-.+++..| ....-.|++...+.+|.--...++..|+.+..|+|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999988666788999999999999999854 3344478888888888766778899999999999864 2
Q ss_pred hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC---hHHHHHHHHcCChHHHHHhhcCCC---chhHHHHH
Q 014864 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD---DMQTQCVIEYQALPCLLNLLSGNY---KKSIKKEA 348 (417)
Q Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a 348 (417)
.+....+.+ .+|.|..+|++.+.+..+.++-++..++.+. +...+.+...+++.....++.-.. +..+.-..
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 233344444 5899999999999999999999998887543 455666778899999988887552 23455667
Q ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc
Q 014864 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (417)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~ 381 (417)
...|+-++.+++.-...+...++...|.++|..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 788999999999988888999999999998854
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.8e-09 Score=92.21 Aligned_cols=186 Identities=23% Similarity=0.222 Sum_probs=154.1
Q ss_pred cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (417)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (417)
.+.+.+.+..|+..|..++.. -++...++..|++..++.++++++ ..+|..|+|+++..+..+|.....+.+.|+++
T Consensus 93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 356788999999999988754 567777899999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864 163 IFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (417)
Q Consensus 163 ~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (417)
.|+..+.+ ++..++..|+++++++..+.+.....+...++...|...+... .+..+++.++..+.++...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999986 4566789999999999999999999999999999999999543 578899999999999998874443333
Q ss_pred hh-chHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864 241 VS-PALPALAHLIHSNDDEVLTDACWALSYLS 271 (417)
Q Consensus 241 ~~-~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 271 (417)
.. +....+..+....+.++.+.++.++..+.
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 33 33344555556667777777777666554
No 52
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.17 E-value=1.6e-08 Score=89.56 Aligned_cols=323 Identities=13% Similarity=0.089 Sum_probs=221.5
Q ss_pred CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHH-------HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 014864 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (417)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~ 145 (417)
.+..++.++.. ..++.....+..+..+++.+ +....+. ....-+.++.+|..++ .-+...+.+++..++
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 45667777765 33556666777788888764 2222211 2234677888998888 677777999999988
Q ss_pred CCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh-cCCCchhHHHHHH
Q 014864 146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT 223 (417)
Q Consensus 146 ~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~~a~ 223 (417)
...+.........=....|...+++ .+..-...|+.+|..+...++ +|..+...+++..++..+ ....+..++...+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 7433322110000112334444554 566677788889988888776 788888888899999888 4455788999999
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCh------HHHHHHHHcCChHHHHhhcCC
Q 014864 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH 296 (417)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~~~~L~~~l~~ 296 (417)
.+++-|+..++........+.++.|..++.+. .++|..-++.++.|+....+ +....++..++.+.+-.+...
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999998765554444467899999999765 67788889999999987764 333455666655544444332
Q ss_pred --CChhhHHHHHHH-------HHHhhcCCh-----------------------HHHHHHH--HcCChHHHHHhhcCCCch
Q 014864 297 --PSPSVLIPALRT-------VGNIVTGDD-----------------------MQTQCVI--EYQALPCLLNLLSGNYKK 342 (417)
Q Consensus 297 --~~~~v~~~a~~~-------L~~l~~~~~-----------------------~~~~~~~--~~~~l~~L~~ll~~~~~~ 342 (417)
.|+++....-.. .-.+++.+. +....+- +..++..|+.+|+.+.+|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 233332221111 111111110 1111111 236778999999988679
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
.+-.-||.=++......|+....+.+.|+=..++++++++|++||.+|+.|+..+..+
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 9999999999999999899888888999999999999999999999999999887654
No 53
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=9.1e-09 Score=100.21 Aligned_cols=269 Identities=19% Similarity=0.233 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (417)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (417)
..|+.|........+.++.|+-+ +|..++.|-+ .--|..|+..|+.+..-.+.....-+.-|+.|.++++
T Consensus 451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL 520 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL 520 (1387)
T ss_pred HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 45677777777766666555553 5656665543 3447889999999888778888888888999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC--chhHHHHHHHHHhhhhcCCCCCChhhh-hch
Q 014864 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQV-SPA 244 (417)
Q Consensus 168 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~ 244 (417)
|+++-.+++...+++...|..-++.|+..+++.++-..+++.+..++ +++-+..++.+|+.++.+.+..+.... .+.
T Consensus 521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l 600 (1387)
T KOG1517|consen 521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL 600 (1387)
T ss_pred hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence 99999999999999999998777889999999988888888885423 457888899999999998765555544 567
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcC----ChHH
Q 014864 245 LPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQ 319 (417)
Q Consensus 245 l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~----~~~~ 319 (417)
+...+..+.++ .+-++..+|-||+.|-.+.++..-.-...+..+.|+.+|.++-++||..|+.+||.+..+ .+++
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 77888888875 678899999999999877766544456667889999999999999999999999999886 3443
Q ss_pred HHHH------------HHcCCh---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 014864 320 TQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (417)
Q Consensus 320 ~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (417)
...+ ++..+. -.++.+++++ .+-+|.+.+-+|+.+..+...+...+.
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 3322 122122 2567777888 999999999999999987666555443
No 54
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.00 E-value=4.4e-08 Score=89.83 Aligned_cols=315 Identities=14% Similarity=0.060 Sum_probs=202.0
Q ss_pred cCHHHHHhhhc----C-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHh-CC-HHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 014864 73 ENLPVMVAGVW----S-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GV-VPRFVEFLLREDYPQLQFEAAWALTNIA 145 (417)
Q Consensus 73 ~~l~~l~~~l~----s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~-i~~Lv~lL~~~~~~~~~~~a~~~L~~l~ 145 (417)
+.+|.+++.+- . +....+..++..+..++... .| -..+..+ .+ +.....-+++..+..+|..|+.+|.+-+
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 34566655543 3 33467788888888886554 33 1112222 22 3333445565555789999999998733
Q ss_pred CCCchhHHHHHhCC----ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHH
Q 014864 146 SGTSEHTKVVIDHG----AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (417)
Q Consensus 146 ~~~~~~~~~i~~~g----~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~ 221 (417)
.. .+..+-..+ .+...+..-+.++.+++..+..+|..|..-.-.+.+..++........+.+ ++++.++...
T Consensus 207 ~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~q 282 (858)
T COG5215 207 MF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQ 282 (858)
T ss_pred HH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Confidence 21 111111112 234445555678999999999999998755444444555543333333444 8889999999
Q ss_pred HHHHHhhhhcCCCC----------CCh-------hhhhchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHH
Q 014864 222 ATWTLSNFCRGKPQ----------PPF-------DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK 277 (417)
Q Consensus 222 a~~~l~~l~~~~~~----------~~~-------~~~~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~ 277 (417)
+....+.+|..... .+. ..+..++|.|+++|... |..+.-.+..||.-.+....+
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd- 361 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD- 361 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence 99999999875411 111 11356899999999542 334555555666555443322
Q ss_pred HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
.+.+. ++..+-.-++++++.-+..|+.++|.+..+..+.....+-...+|.+...+.++ .-.++..++|+++.|+.
T Consensus 362 --~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad 437 (858)
T COG5215 362 --KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD 437 (858)
T ss_pred --HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence 22222 555566667889999999999999999999887766666778899999999977 88999999999999986
Q ss_pred CCHHHHHHHHHCCCHHHHHHHhc---cCCHHHHHHHHHHHHHhhCCC
Q 014864 358 GNREQIQAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~~l~---~~~~~v~~~a~~~L~nl~~~~ 401 (417)
.-++.+.. .|-++..+.... .+++.+..+++|...|++.+-
T Consensus 438 ~va~~i~p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~ 481 (858)
T COG5215 438 HVAMIISP---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI 481 (858)
T ss_pred HHHHhcCc---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence 54433222 222332222221 246788999999999998763
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.98 E-value=1.7e-08 Score=91.05 Aligned_cols=229 Identities=18% Similarity=0.242 Sum_probs=157.9
Q ss_pred hhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHh------cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 161 VPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 161 i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
...++.+|+ +.++++....+..+..+..+.+...+.+.. .....++++++ ..+|..+...++..++.+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 445555554 368899999999999999888877666655 23678899977 777999999999999999988
Q ss_pred CCCCChhhhhchHHHHHHhhcC----CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-----CCC--Chhh
Q 014864 233 KPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MHP--SPSV 301 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-----~~~--~~~v 301 (417)
.+........+.++.++..+.+ ++.+++.-++.++.+|.... .....+.+.++++.+..++ ..+ ...+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 7665555335556666666543 45667788999999998554 4556688899999999999 222 3567
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHhc
Q 014864 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLE 380 (417)
Q Consensus 302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~~l~ 380 (417)
+-.++.++--++.. ++....+.+.++++.+..+++....+.|-+-+..++.|++...++ ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 77888888777754 445556778889999999998876889999999999999985443 6777778777776655554
Q ss_pred c--CCHHHHHHHHH
Q 014864 381 N--AEFDIKKEAAW 392 (417)
Q Consensus 381 ~--~~~~v~~~a~~ 392 (417)
. .|+++....-+
T Consensus 294 rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 294 RKWSDEDLTEDLEF 307 (312)
T ss_dssp S--SSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 3 47777665443
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.98 E-value=1.2e-08 Score=92.18 Aligned_cols=216 Identities=19% Similarity=0.258 Sum_probs=152.1
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHH------hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~------~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 149 (417)
-.+++.+ +.+.+.....+..+..++... +...+.+.. ......|+.++.+++ ..++..|+.+|+.+....+
T Consensus 61 l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 61 LNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCC
Confidence 3555555 567888888999999998875 344444443 236888999888888 8999999999999998755
Q ss_pred hhHHHHHhCCChhHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh------cCCCchhHH
Q 014864 150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSML 219 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll------~~~~~~~~~ 219 (417)
....... .+.++.++.++.+ ++..++..|+.+|.++.... .+|..+.+.|+++.+..++ ....+..++
T Consensus 138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 5444322 3566777777764 45667899999999998665 4899999999999999999 455678899
Q ss_pred HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChH-HHHHHHHcCChHHHHhhcCC
Q 014864 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND-KIQAVIEAGVFPRLAEFLMH 296 (417)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~L~~~l~~ 296 (417)
..++.+++-|+..++........+.+|.|..+++.. .++|..-++.++.|+...... ....++..|+++.+-.+...
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999999999998864444444466899999999765 688889999999999877653 66778888776666555543
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=9.1e-07 Score=84.37 Aligned_cols=289 Identities=17% Similarity=0.177 Sum_probs=217.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP--- 191 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~--- 191 (417)
.|+.|+.-+.+..-.+-|+.|+..|-.++. .++..+.. .+++.|++.|.. .|+++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 388888887776657889999999999875 46666665 568889998875 689999999999999986542
Q ss_pred ---h----------HHH-HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh---hhchHHHHHHhhcC
Q 014864 192 ---R----------CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---VSPALPALAHLIHS 254 (417)
Q Consensus 192 ---~----------~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~L~~ll~~ 254 (417)
. +.+ .+...+.|..++..+ ...|-.++..++..++++....|...... ...++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 111 234566788888888 77889999999999999998875443322 25678999999998
Q ss_pred CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC---C-hhhHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 014864 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---S-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (417)
Q Consensus 255 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~---~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 330 (417)
.-+.++.+++..|+.++.++....+.+.=.+++.+|..++... + .-|...|+..|-|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8899999999999999998887666666667999999999754 2 34677799999999999998888888999999
Q ss_pred HHHHhhcCCC--c-----hhH-----HHHHHHHHHHHhc-CCH----HHH-HHHHHCCCHHHHHHHhccC--CHHHHHHH
Q 014864 331 CLLNLLSGNY--K-----KSI-----KKEACWTVSNITA-GNR----EQI-QAVIEANIIGPLVALLENA--EFDIKKEA 390 (417)
Q Consensus 331 ~L~~ll~~~~--~-----~~v-----~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~~l~~~--~~~v~~~a 390 (417)
.|.++|.... + +.- ...+..++.-+.. +++ .+. +.+...+++..|+.++-++ ..+++.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998775321 2 111 1344455555554 332 222 4556789999999998765 57999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHh
Q 014864 391 AWAISNATSGGTHEQIKYEHT 411 (417)
Q Consensus 391 ~~~L~nl~~~~~~~~~~~l~~ 411 (417)
..++.+.+.+. .....++.+
T Consensus 338 iitvAevVRgn-~~nQ~~F~~ 357 (970)
T KOG0946|consen 338 IITVAEVVRGN-ARNQDEFAD 357 (970)
T ss_pred HHHHHHHHHhc-hHHHHHHhh
Confidence 99999999874 444445543
No 58
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.92 E-value=1.7e-07 Score=88.48 Aligned_cols=318 Identities=14% Similarity=0.121 Sum_probs=202.9
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHhCCCchhH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
.+..++..++++.+..+...+..+.++.+.-....+++-.+.-.+..++..++.++. ..+-.....++.+-..+. .
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r--~- 793 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR--V- 793 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc--c-
Confidence 356677778888888888888888877654333333333344445555555555441 233333333333322210 0
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH--HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
+... ..++..++..|+++++.++.+|+..++.++.--..|. +.+...|. .|...+ ....+++.-.++.++..++
T Consensus 794 kpyl-pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 794 KPYL-PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred ccch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence 0000 1345667788999999999999999999973222221 12222222 344555 6778888888888777776
Q ss_pred cCCC-CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864 231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (417)
Q Consensus 231 ~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 309 (417)
.... .....-+.+++|.|...|.+...+|+++++..++.++...++.+..--=..+.=.|+.+|.+.+..++..|..++
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5431 112233478899999999999999999999999999987665321100012334577788888889999999999
Q ss_pred HHhhcC--ChHHHHHHHH-----------------------c---CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864 310 GNIVTG--DDMQTQCVIE-----------------------Y---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (417)
Q Consensus 310 ~~l~~~--~~~~~~~~~~-----------------------~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (417)
|.|+.. ..+....+++ + .++|.|++=...+ +..|+.-...+++.+...-.+
T Consensus 950 G~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen 950 GYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred hHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHH
Confidence 988742 2222222211 2 3445555555555 778888888888888763222
Q ss_pred -HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 362 -QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 362 -~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
..+++. -+.|.|-+.|.+.|.--|..|+.++.+++.+.
T Consensus 1029 mskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1029 MSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 223333 37888889999999999999999999998874
No 59
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.89 E-value=1.5e-07 Score=84.43 Aligned_cols=272 Identities=17% Similarity=0.172 Sum_probs=188.5
Q ss_pred HHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHh
Q 014864 109 IEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNI 186 (417)
Q Consensus 109 ~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl 186 (417)
.+.+...|.+..|+.++..++ ...++.++++.|-.+.. .++++.+...| +..++.+-+. ..++.....+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 455667789999999999887 23579999999999987 78888888776 5555555543 5678899999999999
Q ss_pred hCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCC-hhhhhchHHHHHHhhcCCChHHHHHHH
Q 014864 187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPP-FDQVSPALPALAHLIHSNDDEVLTDAC 264 (417)
Q Consensus 187 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~ 264 (417)
..++.+....+++.|++..++--+ ...++.+.+.++.+|.|++.+.. ..+ ......+-.-|..+-.+.|+-.+.++|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988888999999999988887 77789999999999999988752 222 222244445566666667888899999
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhH
Q 014864 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (417)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 344 (417)
.+++-++.+.+ .-..+.++|.+...-+++.+-+|..... --...+.+. ....++.|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999986654 3455777787777777777666532211 001111111 123467788889877 6565
Q ss_pred HHHHHHHHHHHhc-CCHH-HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 345 KKEACWTVSNITA-GNRE-QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 345 ~~~a~~~L~nl~~-~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
+.-+++-++.=++ .+.. ..+.+-+-|.|+.|-++.++++.--.+.|-.+|.-+
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 5555555544333 2122 223344678999999999877754444455555444
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.87 E-value=4e-07 Score=83.72 Aligned_cols=320 Identities=12% Similarity=0.110 Sum_probs=203.5
Q ss_pred hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCC
Q 014864 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (417)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~ 160 (417)
.+.++++.-+..|+.++..+..+. +.....-+-...+|.+...+.++. -.++..++||++.++.+-+ ..+-..|-
T Consensus 374 ni~~~~w~nreaavmAfGSvm~gp-~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~va---~~i~p~~H 448 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHGP-CEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADHVA---MIISPCGH 448 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcCc-cHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHHHH---HhcCcccc
Confidence 567889999999999999887654 222222334556888888888666 7899999999999987422 22333454
Q ss_pred hhHHHHh-hC--CCCHHHHHHHHHHHHHhhCCCchHHH---HHHh---cCCHHHHHHHhcC-CCchhHHHHHHHHHhhhh
Q 014864 161 VPIFVKL-LY--SPSDDVREQAVWALGNIAGDSPRCRD---LVLS---QGGLVPLLAQLNG-QPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 161 i~~L~~l-l~--~~~~~i~~~a~~~L~nl~~~~~~~~~---~~~~---~g~i~~L~~ll~~-~~~~~~~~~a~~~l~~l~ 230 (417)
++..+.. +. .+++.+...+.|..-|++.+-++... .++. ..++..|++--.. ..+...+..+..+|..|.
T Consensus 449 l~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli 528 (858)
T COG5215 449 LVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI 528 (858)
T ss_pred ccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 5444432 22 25788899999999999865443221 1110 1123333332221 234556667777777776
Q ss_pred cCCCCCChhhhhchHHH-----------HHHhhcCCC----hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864 231 RGKPQPPFDQVSPALPA-----------LAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~-----------L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (417)
...|........++... +-+.+...| .+++.+.+..|..+.......++.+-+. ++..++.+|.
T Consensus 529 ~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~-lm~Lf~r~le 607 (858)
T COG5215 529 LICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQ-LMELFIRILE 607 (858)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHHHHHh
Confidence 66554444443333333 333333333 4566666666666654332222222222 5777888888
Q ss_pred CCChh-hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Q 014864 296 HPSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGP 374 (417)
Q Consensus 296 ~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 374 (417)
+.++. +-.....+|++++..-.+... ..-..++|.+.+-|+.. +..+...|...++.++..-...... ....+...
T Consensus 608 s~~~t~~~~dV~~aIsal~~sl~e~Fe-~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~df~~-y~d~~ms~ 684 (858)
T COG5215 608 STKPTTAFGDVYTAISALSTSLEERFE-QYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTDFNI-YADVLMSS 684 (858)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHH
Confidence 87543 445678888998876555544 34457899999999877 8899999999999998642222222 23357889
Q ss_pred HHHHhccC--CHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864 375 LVALLENA--EFDIKKEAAWAISNATSGGTHEQIKYE 409 (417)
Q Consensus 375 L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~l 409 (417)
|++.|+++ +.+++-..+.+++.++..-..++..||
T Consensus 685 LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL 721 (858)
T COG5215 685 LVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYL 721 (858)
T ss_pred HHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHH
Confidence 99999876 568999999999998887666666665
No 61
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.7e-06 Score=72.43 Aligned_cols=318 Identities=18% Similarity=0.172 Sum_probs=206.2
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc---HHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.+-..|..+|..++..++..+..++...+... +..++..|+++.++..+...+ .++-..|...+..++.. +...
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paal 162 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAAL 162 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHHH
Confidence 455556667888899999999988876542222 333568999999999999988 89999999999999985 7778
Q ss_pred HHHHhCCChhHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh-
Q 014864 153 KVVIDHGAVPIF--VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF- 229 (417)
Q Consensus 153 ~~i~~~g~i~~L--~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l- 229 (417)
..+.++.....+ ..+-...+.-.+......+..+.+-++.....+-.+|.+..|..-+....|.-++.+++.....|
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 888887776543 33444456677888888999999888888888888888888887775545554444444433333
Q ss_pred ---------------------hcCCCCCChhhh---------------------------hchHHHHHHhhcCCChHHHH
Q 014864 230 ---------------------CRGKPQPPFDQV---------------------------SPALPALAHLIHSNDDEVLT 261 (417)
Q Consensus 230 ---------------------~~~~~~~~~~~~---------------------------~~~l~~L~~ll~~~~~~v~~ 261 (417)
..+....++... ...+.-...++...|++.+.
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 332211111100 01122233455667888888
Q ss_pred HHHHHHHHhccCChHHHHHHHHcCC--hHHHHhhcCC-CChhhHHHHHHHHHHhhcCC---hHH----------HHHHHH
Q 014864 262 DACWALSYLSDGTNDKIQAVIEAGV--FPRLAEFLMH-PSPSVLIPALRTVGNIVTGD---DMQ----------TQCVIE 325 (417)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~--~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~---~~~----------~~~~~~ 325 (417)
.+..+++.+..+..+ .+.+.+.|- ...++.-..+ +...-+..++++|.+++... +++ +....+
T Consensus 323 aAiDalGilGSnteG-adlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd 401 (524)
T KOG4413|consen 323 AAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD 401 (524)
T ss_pred HHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH
Confidence 888888888765543 344555543 3333333333 33345677888888887432 111 111111
Q ss_pred -------cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC---CHHHHHHHHHHHH
Q 014864 326 -------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAIS 395 (417)
Q Consensus 326 -------~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~~L~ 395 (417)
..-+..+..+++.+ .++++..+..++..++.........+-..+++....+.-... .-+-+.++|.++.
T Consensus 402 aaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAia 480 (524)
T KOG4413|consen 402 AAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA 480 (524)
T ss_pred HHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence 13455677888888 999999999999999887554444444677777666543322 2355667777766
Q ss_pred Hh
Q 014864 396 NA 397 (417)
Q Consensus 396 nl 397 (417)
+-
T Consensus 481 ea 482 (524)
T KOG4413|consen 481 EA 482 (524)
T ss_pred HH
Confidence 53
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.82 E-value=3.4e-07 Score=82.26 Aligned_cols=267 Identities=14% Similarity=0.084 Sum_probs=181.2
Q ss_pred cCHHHHHhhhcCCCh--HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
+.+..|++++.+++. .++.+|.+.|..++.. ++.+.+..-| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 578899999998765 4589999999998864 5666666666 555555555555589999999999999999999
Q ss_pred hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
..+.+++.|++..++......++.+..+|+.+|+|++- .....+..+++..+-+-|..+. .+.|.-++..||-+.+.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999984 3445667777877777787777 666888899999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (417)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 309 (417)
+..+.........+.+..+-.++.+-|+.--.. --..-+.+ .....+++|+++|++.-.+.+.-+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 987654444444555555555555555432111 00001111 1113578899999866544443332222
Q ss_pred HHhhc--CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 310 GNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 310 ~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
..=+. ......+.+-+-|.++.|-.+..++ +..--+-|-.+|.-|-
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG 451 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence 11111 1112233344558888898888877 5544444444554443
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.78 E-value=4e-06 Score=77.56 Aligned_cols=242 Identities=17% Similarity=0.058 Sum_probs=165.6
Q ss_pred CHHHHHhhhc-CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
.++.++..|. .++..+...++..+.. .+ .+. .+..|+..|.+.+ +.++..++.+|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence 4567777774 4556666555544432 11 111 2788888998887 78999999988865442
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
+..+.|+.+|.+.++.++..++.+++..-. ...+.+..++ ++.++.++..++.++..+...
T Consensus 117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 567888889988899999888877776321 1345777778 688899999999999887754
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
..++.|...+.+.|+.|+..+++++..+.. +. ....+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 445667777888899999999999877632 22 223444433444433433333344333
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 392 (417)
+.+ ..++.|..+++++ .++..++++++.+-. + ..++.|+..+.+.. ++..|.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--V---------EAAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c---------chHHHHHHHhcCcH--HHHHHHH
Confidence 222 4577888888865 499999999997743 3 36778888887543 9999999
Q ss_pred HHHHhhCC
Q 014864 393 AISNATSG 400 (417)
Q Consensus 393 ~L~nl~~~ 400 (417)
++..++.-
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99998764
No 64
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=8.7e-07 Score=86.89 Aligned_cols=248 Identities=16% Similarity=0.192 Sum_probs=190.1
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.+|-+++.|-|. --+.-|+..|.+++... ...+..-..-|+.|..+++|+++. .+++-.-+.+...|...++....
T Consensus 473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence 345555544433 23556777788887654 666777778899999999999998 89998888888888887777777
Q ss_pred HHHhCCChhHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 154 VVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
.+++.++-..++..|.. -+++-+..|+++|..++.+-+-.++...+.+.+...+..+++++.+-++..++-+|+.|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 77776777777777765 246889999999999998888888889999999999999965557888999999999999
Q ss_pred cCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccC----ChHHHHHH------------HHcCCh---HHH
Q 014864 231 RGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PRL 290 (417)
Q Consensus 231 ~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~~---~~L 290 (417)
.+.+...+... ..+...|..+|.++-++|+..++.+|+.+..+ .++....+ ++.-+. -.+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 98766665544 66788899999999999999999999998765 23322211 111111 267
Q ss_pred HhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014864 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325 (417)
Q Consensus 291 ~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 325 (417)
+.+++...+-++....-+++.++.+.......+.-
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 77788888999999999999999888766654443
No 65
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.5e-05 Score=74.80 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=201.4
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.+..+++.+..+.+.+|.....++..+........... +.+.+.++++... ..-+..+++.+..+..+. ...
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence 45777888888899999999888887754432333322 3777888888777 788999999999988853 344
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHH-HHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~-~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
.+.+.+.+..|...+.+....... .+..+.-..+.. ++..--.++. .++.++..+ .+....++..+..+...+.+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 566668888898888874443333 233332222211 1111111111 344555555 56677888888887777766
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~ 311 (417)
.-+. ..+...+|.++.-+..........++..++.++...+.... ..-..++|.+...|.+..++++..+..++-.
T Consensus 246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5321 22344555555555444566677888888888877776655 3445699999999999999999999999888
Q ss_pred hhcCCh-HHHHHHH------------------------------HcCChHHHHHhh----cCCCchhHHHHHHHHHHHHh
Q 014864 312 IVTGDD-MQTQCVI------------------------------EYQALPCLLNLL----SGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 312 l~~~~~-~~~~~~~------------------------------~~~~l~~L~~ll----~~~~~~~v~~~a~~~L~nl~ 356 (417)
++.--+ ..++.++ +.-.+..++.++ ... +..+++.++..+.|++
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence 774322 1111111 122223333443 333 6678899999999999
Q ss_pred c--CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 357 A--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 357 ~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
. .++..+..++. .++|.|-..+.+..|++|..+..+|+.+...
T Consensus 401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 7 34555544443 4677777777777899999999999877654
No 66
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.6e-06 Score=78.40 Aligned_cols=257 Identities=16% Similarity=0.155 Sum_probs=186.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
+-+-++.+|+++- +-+|..|+.++..+...-|+..+ ..+|.|..-|.++|+.++..|+.+++.|+..+|..--
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 3556777888888 89999999999998876565544 5789999999999999999999999999988875422
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCC-hHHHHHHHHHHHH--hccC
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSY--LSDG 273 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~--l~~~ 273 (417)
..-|.+.+++..+.+.-+....+..+++|+-..|. .-...+|.|..++++.. ..+...+..++.. ++.+
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 14567888887777888888888888888866542 23567888888887663 4455555554432 3333
Q ss_pred ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
.++... .+.. +++.|-.++.+.|+.++--++-+++.++..++...+. --+.++..|.+. ++.+|-.|...|-
T Consensus 290 ~~d~~a-siqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 211111 1111 5778888899999999999999999999888866553 246789999999 9999999999998
Q ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCH
Q 014864 354 NITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~ 403 (417)
-+... +++.. ++..|+..+... ....|-+.+.-+..++...+.
T Consensus 362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 88753 33332 344555554433 347777777777777766543
No 67
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=8.7e-08 Score=87.30 Aligned_cols=281 Identities=17% Similarity=0.247 Sum_probs=190.8
Q ss_pred HHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 014864 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (417)
Q Consensus 112 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 191 (417)
+.+..+.+.|+++|++++ ..+..-++..++|..-.-+.-...+++.|+|..|+.++.+.+..++....|++..+..+..
T Consensus 427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 456678999999999988 7888889999999988777778889999999999999999999999999999999986654
Q ss_pred hH-HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC--CChhhh-----h-chHHHHHHhhcCCChHHHHH
Q 014864 192 RC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPFDQV-----S-PALPALAHLIHSNDDEVLTD 262 (417)
Q Consensus 192 ~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~-----~-~~l~~L~~ll~~~~~~v~~~ 262 (417)
+. +-.++..-++..++.+. .++...++..+...+.|+..+... ...... . -....|+..+...+|-....
T Consensus 506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 33 33556677899999999 888899999999999999885421 111111 1 24455667777777766677
Q ss_pred HHHHHHHhccCChHHHHHHHHc-CChHHHHhhc----CC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 014864 263 ACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFL----MH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (417)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l----~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 330 (417)
.|..|.+++..+++....+.+. ..+..+..+| .. ....+..+-....-++....+.....+.-. |
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p 661 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P 661 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence 7888888877666554444433 2333333222 21 112233333333333333222221111100 2
Q ss_pred HHHHhhcCC--CchhHHHHHHHHHHHHhc---CCH------HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 331 CLLNLLSGN--YKKSIKKEACWTVSNITA---GNR------EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 331 ~L~~ll~~~--~~~~v~~~a~~~L~nl~~---~~~------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
.+-..=.+. .+.++-.+..|.+.|+.. ++. +.++.+.+.|+-+.|...-.++.+.||+.+-.+|.++
T Consensus 662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 221111111 145677888899888764 222 6677888888888888888888889999999999886
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.1e-05 Score=77.52 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=54.2
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (417)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 157 (417)
+.+.|++.+.-++-.|+.++.++.+. +.+. .+.|.+-++|++.+ +-++..|+.|...+....|+..+.
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~---Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~--- 179 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSP---EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEH--- 179 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCH---HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHH---
Confidence 33444555666666666666666532 2222 23555666666666 667777776666666655554432
Q ss_pred CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 014864 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (417)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 191 (417)
.++..-.+|.+.+.-|...++..+..+|..++
T Consensus 180 --f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 180 --FVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred --hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 23344455555555555555555555554443
No 69
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.68 E-value=1e-06 Score=81.88 Aligned_cols=266 Identities=16% Similarity=0.121 Sum_probs=171.5
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCC-CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
+..++..|++..+.++..|+.....++..-+ ......+...|. .|.+.|.... +++.-..+.+++.|.+...-...
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence 4667778899999999999876665532110 122334445553 4677777777 88888888777777663111100
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.---.|++|.|..+|.+.+.+++...+..++.||..+|+....----.+--.|+..| .+.+.+++++|..++..+++.-
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence 001238999999999999999999999999999988775321111111233466777 6778999999999999998863
Q ss_pred CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~ 313 (417)
. -..++..|+.-|...+-..+....-+++-.+....- ..++|.|+.=-..++..++.-.+++++.+.
T Consensus 762 G------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 762 G------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred C------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 1 134555666666555444444333344433322211 135677776667778888888888887766
Q ss_pred cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (417)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 359 (417)
.....+... .-.-+.|.|-..|.+. ++.-|..|..++..++-++
T Consensus 829 eyig~~s~d-Yvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 829 EYIGQASLD-YVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHH-HHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCC
Confidence 433322211 1124567777888887 8888999998888887653
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=7.2e-06 Score=78.66 Aligned_cols=276 Identities=15% Similarity=0.176 Sum_probs=195.7
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
.|.+-+.++..++.++..|+-++.++.... |..-+ .+++..-++|.+.+ ..+...++..+..+|..+++....
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence 577778888999999999999988887653 33322 24788888888888 788899999999999988877777
Q ss_pred HHhCCChhHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC---CC--
Q 014864 155 VIDHGAVPIFVKLLYS---------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QP-- 214 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~---------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~---~~-- 214 (417)
+.+ .++.|+..|+. ++|-++...++.|+-+-.+++...+.+-+ .|-+.... +.
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence 765 66767666632 57889999999999988777765554322 23333321 11
Q ss_pred chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l 294 (417)
...+...++.++..+-... ....-++.+|-++|.+.|..++.-++..|.++...++..++.- =..++.+|
T Consensus 290 GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL 359 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECL 359 (866)
T ss_pred hhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHh
Confidence 1335555555555444331 1223467788889999999999999999999988777655432 35689999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHH---H----
Q 014864 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQA---V---- 366 (417)
Q Consensus 295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~---l---- 366 (417)
+++|..++..|+..+-.+...+. ... .+.-|+.+|.+. +++++...+.-+.-++. ..|+..+. +
T Consensus 360 ~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl 431 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVL 431 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 99999999999999888875443 222 356688888888 99999999988888886 33433322 1
Q ss_pred ------HHCCCHHHHHHHhccC
Q 014864 367 ------IEANIIGPLVALLENA 382 (417)
Q Consensus 367 ------~~~~~i~~L~~~l~~~ 382 (417)
++..++..++.++.+.
T Consensus 432 ~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 432 KTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HhcccccchhhHHHHHHHHhcC
Confidence 2345566777777655
No 71
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.64 E-value=1.5e-05 Score=73.25 Aligned_cols=251 Identities=26% Similarity=0.287 Sum_probs=171.9
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
..++.+++.+.+.++.++..|+..+..+... ..++.+..++.+.+ +.++..|+.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~----- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP----- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh-----
Confidence 3578889999999999999999887665322 25999999999999 89999999988887542
Q ss_pred HHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCc-----------hhHHH
Q 014864 153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK-----------LSMLR 220 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----------~~~~~ 220 (417)
..++.|+.++. +++..++..+.++|+.+-... .+.+++..+.+... ..++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 46888999998 599999999999999874221 36777777733221 13445
Q ss_pred HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChh
Q 014864 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300 (417)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 300 (417)
.+...+..+-. ...++.+..++.+.+..++..+..+|+.+.... ..+.+.+...+.+.++.
T Consensus 168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 55555554443 245677888888888899999999999887554 23457788888999999
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc
Q 014864 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (417)
Q Consensus 301 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~ 380 (417)
++..++..++.+-.... ++.+...+.+. +..++..+...+... +.. .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~~~-----------~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDEEA-----------VDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcchh-----------HHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence 99999999988764332 34456666665 555555444444311 000 11233334444
Q ss_pred cCCHHHHHHHHHHHHHhhCC
Q 014864 381 NAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 381 ~~~~~v~~~a~~~L~nl~~~ 400 (417)
+....++..+..++..+...
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 286 DEANAVRLEAALALGQIGQE 305 (335)
T ss_pred cchhhHHHHHHHHHHhhccc
Confidence 44555555555555554443
No 72
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.62 E-value=2.1e-06 Score=81.51 Aligned_cols=262 Identities=16% Similarity=0.152 Sum_probs=168.8
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCC-CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC--chhH
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHT 152 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~ 152 (417)
..++..|++..+.++.+|+..+..++..-+ ...-+.+...|+ .|.+.|.... +++.-..+.++..|...- ....
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence 344556778899999999888776643211 112233445554 4778888777 888777666666665521 1111
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
..+ .+++|.|..+|++.+.++++.++..++.||..++++...----.+--.|+.+| ...+.++++++..++..++..
T Consensus 879 pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHh
Confidence 112 27899999999999999999999999999977765321111111233566777 666789999999999999986
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
-. -..++..|+.-|...+-..+....-+++-.+....- ..++|.|+.--..++..++.-.+++++.+
T Consensus 956 IG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 956 IG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred cC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence 31 134555566655544433333333333333322111 13677777777778888999999998887
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
.....+..... -.-+.|.|-..|.+. +..-|..|+.++..++-+
T Consensus 1023 FeyigemskdY-iyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1023 FEYIGEMSKDY-IYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHhhhH-HHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 75433222211 124677888888887 888888998888888764
No 73
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.58 E-value=8.3e-06 Score=74.62 Aligned_cols=316 Identities=18% Similarity=0.158 Sum_probs=194.2
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.+.+...+-+++.+++..|.+.+|.++.. ....+.+.+.++--.++.-|..+. +..-+.+|++.+..+..... ..+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~ 103 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK 103 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc
Confidence 34444455566699999999999999865 466777888886666667666543 35678899998888877421 111
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+..|++..++.+..++++..+..|+.+|+.++-.+| +.+...|++..|++.+.+ ...++...++.++..+...+
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence 1244788999999999999999999999999998877 478899999999999955 44448889999999999886
Q ss_pred CCCChhhhhchHHHHHHhh-cC------CCh--HHHHHHHHHHHHhccCChHHHHHHHH-cCChHHHHhhcCCCChhhHH
Q 014864 234 PQPPFDQVSPALPALAHLI-HS------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVLI 303 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll-~~------~~~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~L~~~l~~~~~~v~~ 303 (417)
.........--+..++.-+ .. ++. +....+..++..+-..=++....-.+ ...+..|+..|..++++++.
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence 4444332222233322222 11 122 34445555555544332222111111 13678899999999999999
Q ss_pred HHHHHHHHhhcCChHH-HHHHH------HcCChHHHHHhhc--CCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHH
Q 014864 304 PALRTVGNIVTGDDMQ-TQCVI------EYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIG 373 (417)
Q Consensus 304 ~a~~~L~~l~~~~~~~-~~~~~------~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~ 373 (417)
..+..+-.+..-.... ..... ..|-...-.++-. .+......... .-=.++... ..--...+++.|+++
T Consensus 259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence 9988888776533211 11000 1111100000000 00000000000 000111110 011233456899999
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHhhC
Q 014864 374 PLVALLENA-EFDIKKEAAWAISNATS 399 (417)
Q Consensus 374 ~L~~~l~~~-~~~v~~~a~~~L~nl~~ 399 (417)
.|+++..+. +..+...|...|+.+..
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999876 88999999999987754
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.57 E-value=1.5e-06 Score=80.83 Aligned_cols=236 Identities=16% Similarity=0.138 Sum_probs=157.0
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH--HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP- 236 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~- 236 (417)
++..++.+|+++.+.++.+|+...+.|+.--..| -+.+...|. .|..-+ ....+++.-.++.+++.+.......
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5677788999999999999999999886221111 122222222 234444 5667888877777777665543111
Q ss_pred ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcC-
Q 014864 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG- 315 (417)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~- 315 (417)
...-+.+++|.|...|.+...++..+....++.++...++.+..--=..+.=.|++.|.+.+.+++..|..++|.|+..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 1123478899999999999999999999999999887765321100012334577888888999999999999988753
Q ss_pred -ChHHHHHHHH-----------------------cC---ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHH
Q 014864 316 -DDMQTQCVIE-----------------------YQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVI 367 (417)
Q Consensus 316 -~~~~~~~~~~-----------------------~~---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~ 367 (417)
..+....+++ +| ++|.|+.=...+ +..|+.-...+++.+...-. ...+++.
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy 840 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVY 840 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 23 344444444455 67788888888888775322 2333433
Q ss_pred HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 368 ~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
-+.|.|-+.|.+.|+--|..|..++.+++.++
T Consensus 841 --~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 841 --SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred --HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 37788889999999999999999999998875
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.8e-05 Score=75.06 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=164.8
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
-+.++.+|.+.-+-++..|+-.+.++.-.. ++.. ...+|.|++-|.+++ |.++-.|+.+++.++..+|.+.-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAl-----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEAL-----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhH-----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence 467788888888999999998888887553 2222 124899999999999 99999999999999998776532
Q ss_pred HHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 155 VIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
..-|.+.++|.. .|.=+....+..+++|+--.|...+. .+++|..++.+..-.++...++.++..-+...
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 456888888864 44445566788899998777755444 68899999954445566666666554432222
Q ss_pred CC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 234 PQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 234 ~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.. .....+.-++..|-.++.++|+.+..-++.+++.+...++..++. .-..++.+|.+.|+.+|..|+..+--+
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 22 233445677888888999999999999999999998877765442 356789999999999999999998777
Q ss_pred hcC
Q 014864 313 VTG 315 (417)
Q Consensus 313 ~~~ 315 (417)
+..
T Consensus 364 Vsk 366 (877)
T KOG1059|consen 364 VSK 366 (877)
T ss_pred hhh
Confidence 643
No 76
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.56 E-value=6.5e-06 Score=80.22 Aligned_cols=311 Identities=13% Similarity=0.115 Sum_probs=189.9
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHH
Q 014864 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (417)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 156 (417)
.+++.+.+.|.+.++.|+.-|..-+... .-..+.--+..++..++++|++.+ .++|..|++|++-+++.-++.. +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~--le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ--LE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH--HH
Confidence 7888999999999999999888766543 222222234456899999999998 9999999999999997433321 11
Q ss_pred hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHH----HHHhcC-CCchhHHHHHHHHHhhhhc
Q 014864 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL----LAQLNG-QPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L----~~ll~~-~~~~~~~~~a~~~l~~l~~ 231 (417)
..++.|+.-+-++....+..+.-.|.....+-+..........+.+.+ .+.+.. .+...++-.++..+..+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 234455554434333344333333322222211111222222333334 433322 2233355556655554444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG 310 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~ 310 (417)
.........-..++..+..-+.++-..|+..++.+|+.++...+.. ++ .+++..|++-|... ++.....-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3322222244566777888888888999999999999998654432 11 12456666666544 4445555667788
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-----
Q 014864 311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA----- 382 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~----- 382 (417)
.++......... .-..++|.+.+.. +.. +.++|+.+..++.-+...+|..+-..+. .++..+++.+..+
T Consensus 239 ~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGS-HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhc-ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 887654433221 1236788888888 555 8899999999999998877766544332 3444444444210
Q ss_pred -----------------------------CHHHHHHHHHHHHHhhCC
Q 014864 383 -----------------------------EFDIKKEAAWAISNATSG 400 (417)
Q Consensus 383 -----------------------------~~~v~~~a~~~L~nl~~~ 400 (417)
.++||.+|+.++..++..
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 147999999999888775
No 77
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=6.3e-05 Score=64.56 Aligned_cols=267 Identities=16% Similarity=0.139 Sum_probs=166.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHH--hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
...+++++.+.+ |.++..|+..+..++.. ..+.+. +.-.++.+.+++....+ .+.|+.++.|++.+.. .++
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 456888999998 99999999999998875 222222 22467888899987666 7889999999997765 677
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh-------hhhchHHHHHHhhcCCCh--HHHHHHHHH
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSNDD--EVLTDACWA 266 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-------~~~~~l~~L~~ll~~~~~--~v~~~a~~~ 266 (417)
.+++. .+..++..+ .++...+...++..++|+++.+...... ...+.+.....+...+-. .-..+.+..
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77766 666677777 5555678888999999999875221111 112333444444443311 234566777
Q ss_pred HHHhccCChHHHHHHHHcC--ChHHHHhhcCCCChhhHH-HHHHHHHHhhcCChHHHHHHHH--cCChHHHH--------
Q 014864 267 LSYLSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLI-PALRTVGNIVTGDDMQTQCVIE--YQALPCLL-------- 333 (417)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~--~~~~L~~~l~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~-------- 333 (417)
+++++....++. .+.... ..+.+..+-. .+..+|. ..+.+|-|+|.....+-. +++ ..++|.++
T Consensus 156 f~nls~~~~gR~-l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGRK-LLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhhh-HhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence 888876554432 233222 2233444444 4444544 477888888876654333 221 12233222
Q ss_pred -------------Hhhc-----CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHH
Q 014864 334 -------------NLLS-----GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAI 394 (417)
Q Consensus 334 -------------~ll~-----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L 394 (417)
.+|. .+ ++.+|+.-.-+|.-+|+. ...++.+.+.|+.|.+-.+-+. .++++++.+-...
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRep-dpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREP-DPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCC-ChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3332 22 788999999999999885 4456778888888876555443 4566665544444
Q ss_pred HHhh
Q 014864 395 SNAT 398 (417)
Q Consensus 395 ~nl~ 398 (417)
.-+.
T Consensus 311 q~Lv 314 (353)
T KOG2973|consen 311 QMLV 314 (353)
T ss_pred HHHH
Confidence 3333
No 78
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=4.8e-05 Score=65.26 Aligned_cols=272 Identities=14% Similarity=0.177 Sum_probs=171.2
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+..+++++++.+|.++..|+..+..+... ..+.+. +.-.++.+.+++.... + -..|+.+|.|++.. ...+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHHH
Confidence 46889999999999999999888877543 222221 3345788999998877 4 67899999999985 6666
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC-----CHHHHHHHhcCCC-c-hhHHHHHHHH
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-----GLVPLLAQLNGQP-K-LSMLRNATWT 225 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g-----~i~~L~~ll~~~~-~-~~~~~~a~~~ 225 (417)
+.+++. .+..++..+.++...+....+.+|.|++.+...+........ ++..++....+.. + -.-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 666665 667777777777777888999999999998876665543322 3344444332333 2 1335677778
Q ss_pred HhhhhcCCCCCChhhhhchH--HHHHHhhcCCChHHHH-HHHHHHHHhccCChHHHHHHHHc--CChHHHH---------
Q 014864 226 LSNFCRGKPQPPFDQVSPAL--PALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVFPRLA--------- 291 (417)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~~~~L~--------- 291 (417)
++|+++.............+ ..+..+-. .+..++. ..+.+|.|+|......-. +++. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence 88888875433333332222 22333333 4555553 456778887755443222 2221 2233222
Q ss_pred ------------hhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864 292 ------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (417)
Q Consensus 292 ------------~~l~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (417)
++|. .+++.++..-+.+|--+|.... .++.+...|+.|.+..+-+...+++++..+-....-
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2332 2467889999999988886554 445577778888777776666466666544444444
Q ss_pred HhcC
Q 014864 355 ITAG 358 (417)
Q Consensus 355 l~~~ 358 (417)
+..+
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 4443
No 79
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.53 E-value=2.7e-07 Score=55.41 Aligned_cols=41 Identities=41% Similarity=0.674 Sum_probs=38.3
Q ss_pred CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 359 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
++++++.+++.|++|.|+++|++++++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47788999999999999999999999999999999999973
No 80
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.53 E-value=4e-06 Score=81.63 Aligned_cols=311 Identities=15% Similarity=0.155 Sum_probs=185.6
Q ss_pred HHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864 78 MVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (417)
Q Consensus 78 l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 155 (417)
.++.|.+ .|.+++..|..++..++.... +.... .-..+++.|++-|.+ +..+..|+++++.++...-.....-
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~-eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~ 647 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGN-ELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSP 647 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhh-hhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhh
Confidence 3444443 467888888888887765432 11111 112246666666664 5678899999999998533332222
Q ss_pred HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
+-..+++.+..++......++..++.++-.+..... .......+. ++..+..++ ..++..+...+..++..+....|
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Li-sesdlhvt~~a~~~L~tl~~~~p 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLI-SESDLHVTQLAVAFLTTLAIIQP 725 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhh-hHHHHHHHHHHHHHHHHHHhccc
Confidence 223577888888887777777777777766653211 111122221 445556666 66778888999999999998877
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHH----hccCChHHHHHHHHcCChHHHHhhcCCCCh-----hhHHHH
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY----LSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-----SVLIPA 305 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~----l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-----~v~~~a 305 (417)
.........+++.++.+++++- ++..++.++.. +........ + ...++.++..+-+ .+-..|
T Consensus 726 s~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kqa 796 (1233)
T KOG1824|consen 726 SSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQA 796 (1233)
T ss_pred HHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHHH
Confidence 6666666888999999998763 22222222222 211111110 1 3445556654421 233344
Q ss_pred HHHHHH----hhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc
Q 014864 306 LRTVGN----IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (417)
Q Consensus 306 ~~~L~~----l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~ 381 (417)
...++. ++...+.....+ ....+..+...+.+..++.-|...+|.+-.+-+.. ...++...+++.+.+
T Consensus 797 ~~siA~cvA~Lt~~~~~~s~s~----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~s 868 (1233)
T KOG1824|consen 797 YYSIAKCVAALTCACPQKSKSL----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNS 868 (1233)
T ss_pred HHHHHHHHHHHHHhccccchhH----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCC
Confidence 444433 333332111111 12233344444436788888999999987642211 123455678888999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 382 AEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 382 ~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
++.+++..|.+||++++.+..+..++.++++
T Consensus 869 p~edvksAAs~ALGsl~vgnl~~yLpfil~q 899 (1233)
T KOG1824|consen 869 PSEDVKSAASYALGSLAVGNLPKYLPFILEQ 899 (1233)
T ss_pred ChHHHHHHHHHHhhhhhcCchHhHHHHHHHH
Confidence 9999999999999999998888888777653
No 81
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=5.8e-05 Score=72.51 Aligned_cols=302 Identities=15% Similarity=0.152 Sum_probs=187.9
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.+..+-+.|+.+++-++..|++.+..+= -+.+.-+ ++-.+-+...+.. +-+|..|+.++..+-+-+++...
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence 4556666666667766666666655431 1111111 1233334555566 88999999999998887777766
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+. ..+-.+|.+.++.+.-.|+.++-.+|-+.- +. -.+....+++++ .+-+.--+..++..|...|+..
T Consensus 180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dL--IHknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DL--IHKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HH--hhHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence 443 445567888889999999999888875432 22 123456677777 4445555556666666666543
Q ss_pred -CCCCh----------------------------hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc
Q 014864 234 -PQPPF----------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (417)
Q Consensus 234 -~~~~~----------------------------~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (417)
+.+.. .-..-.+...-.+|.+.++.|.-.++.+..+++-.. ...
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~----- 321 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT----- 321 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----
Confidence 21100 001224455556778889999999999999987433 222
Q ss_pred CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH----------------H---------HHc----CChHHHHHh
Q 014864 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC----------------V---------IEY----QALPCLLNL 335 (417)
Q Consensus 285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~----------------~---------~~~----~~l~~L~~l 335 (417)
.+++.|+.+|.++. .++.-.+..|..++...+..... + .++ .+++-+...
T Consensus 322 ~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y 400 (968)
T KOG1060|consen 322 KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY 400 (968)
T ss_pred HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 24667787776543 34555555555555333211111 1 111 234445555
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864 336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYE 409 (417)
Q Consensus 336 l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l 409 (417)
+.+. +..+...|..+||.++..... +...++.-|+.++++.+..|..+++-+|..+......++.+.+
T Consensus 401 I~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii 468 (968)
T KOG1060|consen 401 IKSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEIL 468 (968)
T ss_pred HhcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence 6666 667888888999998864332 2234677889999999999999999999999988766664444
No 82
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=4.6e-06 Score=79.88 Aligned_cols=230 Identities=18% Similarity=0.181 Sum_probs=142.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
+...+...+++.+ +.++..|+-+..++-..+ .+.+.+.|.++.|..++.++++.+...|+.+|..|....+..-..
T Consensus 122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3677888888888 899999999888887643 455678899999999999999999999999999998666531111
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 276 (417)
.+..-.+..++..+ +.-.-..-+.++-.++...|... .-...++..+...|.+.+..+...+...+.++......
T Consensus 198 ~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 198 ELNPQLINKLLEAL----NECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred cccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 11111233344444 22222233344555555544444 33456677777778888877777777777777655444
Q ss_pred HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH--------------------------HcC---
Q 014864 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--------------------------EYQ--- 327 (417)
Q Consensus 277 ~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--------------------------~~~--- 327 (417)
....+. ..+-+.++.++.... .++--|++-+.-+....+.....-+ .++
T Consensus 273 ~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 273 VNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred HHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 222222 235667777777666 6666666666655544332111000 111
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
++.-+...-..- +.+..+++.+++++++..
T Consensus 351 vl~El~eYatev-D~~fvrkaIraig~~aik 380 (734)
T KOG1061|consen 351 VLAELKEYATEV-DVDFVRKAVRAIGRLAIK 380 (734)
T ss_pred HHHHHHHhhhhh-CHHHHHHHHHHhhhhhhh
Confidence 122222222333 677888999999999864
No 83
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.4e-05 Score=73.77 Aligned_cols=318 Identities=13% Similarity=0.111 Sum_probs=199.2
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
-++.++..+...|..++..|+..+.+++...+.+... .-..+...++.+..+++ ..++. ++..+-.+..+-.....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 4678888888899999999999988887543222221 12345677777777666 44443 33343333331111111
Q ss_pred -HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 154 -~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
.+-=.+.+|.|-.-+...++..+...+.-|.-+-.-.+ .+.+-- ...++-|++.+ .+++.+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 11111345555555555677777766665555533222 233221 12456677777 77888888777777777765
Q ss_pred CC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChh-hHHHHHHHH
Q 014864 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRTV 309 (417)
Q Consensus 232 ~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-v~~~a~~~L 309 (417)
.- ..+........++.++.-+.++++.++..|+.-+.....-.+.. -...-+|++..+++++.+.++. ++..+...-
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 43 22233355678899999999999999988887777766544332 2344567888899999887763 444443332
Q ss_pred H---HhhcCChHHHHHHHHc-CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHH
Q 014864 310 G---NIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD 385 (417)
Q Consensus 310 ~---~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~ 385 (417)
+ .++.... ..+. ++. .++..+...+.++ ..+.|..+..-+..+-...|.+. ......+++.|+.-|++.+.+
T Consensus 317 ~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH
Confidence 2 2221111 1111 222 4567788888888 88999888866666655444433 223567999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCH
Q 014864 386 IKKEAAWAISNATSGGTH 403 (417)
Q Consensus 386 v~~~a~~~L~nl~~~~~~ 403 (417)
|...++..+.+++...+.
T Consensus 393 vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999999997644
No 84
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=3.4e-05 Score=72.39 Aligned_cols=270 Identities=17% Similarity=0.131 Sum_probs=182.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
++..|.+-++.+. +.+|.....||..+....... ......+.+.+++......-+..+.+.++.+..+.. ...
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 4788888999988 899999999888776521111 011345677888888888888899999999887764 345
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN- 275 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~- 275 (417)
+.+.+++..+...+.+..+..-++.+..+.-..+..-.......+...+|.++..+.+..+.++..+..+...+...-+
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 5677788888888843333333333444444444333333344556778888888888888898887776665543322
Q ss_pred HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (417)
.... .+++.++.-+....|.....++..+|.++...+.+.. ..-..++|.+.+.|.+. ++++|+.+..++.++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 1111 1455555555555888999999999999988887765 45568999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHH------------------------------CC----CHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 356 TA--GNREQIQAVIE------------------------------AN----IIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 356 ~~--~~~~~~~~l~~------------------------------~~----~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
+. .+++ ++.++. .. ++|.|-+-+...+..+++.++..+.|++.
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 86 4554 322210 00 12333333334456677888888888877
Q ss_pred CC
Q 014864 400 GG 401 (417)
Q Consensus 400 ~~ 401 (417)
-.
T Consensus 402 Lv 403 (569)
T KOG1242|consen 402 LV 403 (569)
T ss_pred hh
Confidence 65
No 85
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.47 E-value=3.2e-05 Score=71.02 Aligned_cols=214 Identities=26% Similarity=0.336 Sum_probs=158.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
.++.+.+++.+.+ ..++..|++.++.+... .+++.+..++.+.++.++..++.+|+.+- .+
T Consensus 44 ~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----- 104 (335)
T COG1413 44 AADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DP----- 104 (335)
T ss_pred hHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence 5888999999987 89999999997776542 57899999999999999999999988872 22
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh------------HHHHHHH
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDAC 264 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~------------~v~~~a~ 264 (417)
..++.++.++..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+.
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 15788999995578999999999999988764 225556666665442 2444444
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhH
Q 014864 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI 344 (417)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 344 (417)
..++.+-. ...++.+...+.+....++..|..+|+.+.... ..+.+.+...+.+. +..+
T Consensus 171 ~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~v 229 (335)
T COG1413 171 EALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEV 229 (335)
T ss_pred HHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHH
Confidence 44444321 135678888899998899999999999998765 24457788888888 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (417)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~ 395 (417)
|..++..|+.+-.. ..++.++..+.+.+..++..+..++.
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 99999999988543 12445555666666555555554443
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2.4e-06 Score=81.78 Aligned_cols=299 Identities=15% Similarity=0.188 Sum_probs=159.2
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 155 (417)
..+.+.++++++.++..|+...+++- ....+...+.|+++.|..++.+++ +.+...|+.+|..+...++......
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCccc
Confidence 45666778888888888888888875 445666788999999999999777 8999999999999998655311111
Q ss_pred HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH-HH--HH--------------HhcCCHHHHHHHhcCCCc--h
Q 014864 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-RD--LV--------------LSQGGLVPLLAQLNGQPK--L 216 (417)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~-~~--~~--------------~~~g~i~~L~~ll~~~~~--~ 216 (417)
+....+..++..+.. -.-..-+.+|.+++...+.- ++ .+ ...+.++.+++++...++ .
T Consensus 199 l~~~~~~~lL~al~e---c~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~ 275 (734)
T KOG1061|consen 199 LNPQLINKLLEALNE---CTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE 275 (734)
T ss_pred ccHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH
Confidence 111222233333321 11122223333333222210 00 00 011223333333322111 1
Q ss_pred hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH---h---------hcCCC-hHHHHHHHHHHHHhccCChHHHHHHHH
Q 014864 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH---L---------IHSND-DEVLTDACWALSYLSDGTNDKIQAVIE 283 (417)
Q Consensus 217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~---l---------l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (417)
.+......-+..+....+...+..+..+--.+.+ + .+..| ..+...-+.++..++... +.+.
T Consensus 276 ~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~--nl~q--- 350 (734)
T KOG1061|consen 276 LLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA--NLAQ--- 350 (734)
T ss_pred HHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh--HHHH---
Confidence 2222222222333333222222222111111111 0 01112 223333444444443221 1111
Q ss_pred cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (417)
Q Consensus 284 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (417)
++..+...-..-+.+....+++++|+++..-++. ++.++.|+.++... -..+..+++..+..+....|...
T Consensus 351 --vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 351 --VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKY 421 (734)
T ss_pred --HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCch
Confidence 3444555555667888999999999998654433 57888899998877 66777788888888877655433
Q ss_pred HHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCC
Q 014864 364 QAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 364 ~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~ 401 (417)
.. +++.+...+.+ ++++.|....|.++..+..-
T Consensus 422 ~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i 455 (734)
T KOG1061|consen 422 ES-----VVAILCENLDSLQEPEAKAALIWILGEYAERI 455 (734)
T ss_pred hh-----hhhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence 22 23333333332 46777888888887766653
No 87
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.44 E-value=2.3e-06 Score=63.82 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=100.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
+.+..|+.-.....+.+.+.+...-|.|.+.+ |.+-..+.+.++++.++..|..++..+++.++..|+|+|-+.. ..+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 44666776555554589999999999999996 8888899999999999999999999999999999999998876 678
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+.+.++++.++..+ .++...+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 899999999999999 7888888999999999999875
No 88
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00022 Score=70.76 Aligned_cols=315 Identities=15% Similarity=0.176 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcHHHH-----HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864 88 GVQYECTTQFRKLLSIERSPPIEEV-----IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (417)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~-----~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (417)
.-...++.+|+++++.. |....+ .--|.++.++.++.....+.++..|+.++..+... .+....+.+.|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHH
Confidence 35567899999998763 322222 22366788888887655588999999998887774 78888889889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC---CCCChh
Q 014864 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFD 239 (417)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~ 239 (417)
.|+.+|.+ -+..++.++.+|..+++... ......+.|++..++.++..+.++..+..++..+..+..++ |.....
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 99999975 46788999999999987766 55667889999999999988889999999999999998876 222221
Q ss_pred hhh-----------chHHHHHHhhcC--CChHH------HHHHHHHHHHhcc--------CC------hHH---------
Q 014864 240 QVS-----------PALPALAHLIHS--NDDEV------LTDACWALSYLSD--------GT------NDK--------- 277 (417)
Q Consensus 240 ~~~-----------~~l~~L~~ll~~--~~~~v------~~~a~~~l~~l~~--------~~------~~~--------- 277 (417)
.+. ..-...+.++.. ++|++ +...-..+..+.. ++ ++.
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 111 111223333322 12221 1122222222210 00 000
Q ss_pred --------HHHH-HH------------cCChHHHHhhcCCCCh--hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 014864 278 --------IQAV-IE------------AGVFPRLAEFLMHPSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (417)
Q Consensus 278 --------~~~~-~~------------~~~~~~L~~~l~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 334 (417)
.+.+ .+ .+.++.+..++..+.+ ........++-.+.+..+...+.+-..|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 0011 11 1334455555554432 22233333445556666666666667799999999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH 410 (417)
Q Consensus 335 ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~ 410 (417)
.+... +..+-+.|..+|..++++ .-+...+.....+..++..+... +...--|+.+|..+......+.+...+
T Consensus 2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQML 2127 (2235)
T ss_pred HHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 99887 777778999999999874 44566666666666677777643 344447888888877754444433333
No 89
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.43 E-value=4.9e-07 Score=54.24 Aligned_cols=41 Identities=41% Similarity=0.863 Sum_probs=38.2
Q ss_pred CchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 014864 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (417)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~ 188 (417)
++++++.+++.|++|.|+.+|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999973
No 90
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.42 E-value=8e-05 Score=69.07 Aligned_cols=214 Identities=18% Similarity=0.067 Sum_probs=149.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
.++.++..|.....+.+...+++++..... + .++..|+..|.+.++.++..++.+|+.+-. +
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence 588888999644437777777666643221 1 238899999999999999999999987521 1
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 276 (417)
+....|+.++ .+.++.++..++.++.... ....+.+..+|.++++.|+..++.+|+.+...
T Consensus 117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 2466788888 7888889988887776622 12356788889999999999999999988532
Q ss_pred HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 277 ~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
..++.|...+.+.++.|+..|+.+++.+.. +.. ++.+..+.... ....+..+..++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~-g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLA---------WGVCRRFQVLE-GGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhH---------HHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence 245667788999999999999999977743 222 33455544443 333444433344333
Q ss_pred cCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
+.+ ..++.|..+++++. ++..++++++.+-..
T Consensus 237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p 268 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV 268 (410)
T ss_pred -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc
Confidence 323 35777888887644 999999999977543
No 91
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.41 E-value=6.1e-06 Score=61.61 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=108.5
Q ss_pred hccCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864 71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (417)
Q Consensus 71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 149 (417)
.++-+..|+...+. .+.+.+.+.+..|.+++-. +-+...+.+.+++..++..|..++ ..+...++..|+|+|.+ +
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~ 89 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-K 89 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-h
Confidence 44667778877765 7788899899899998754 456777889999999999999999 89999999999999996 8
Q ss_pred hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhc
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~ 200 (417)
.+.+.+++.+++|.++..+.++.......++.++..++......++.+..-
T Consensus 90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 899999999999999999999999999999999999997777677776544
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.39 E-value=7.5e-07 Score=57.53 Aligned_cols=55 Identities=24% Similarity=0.605 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
+.+|..|+|+|++++...++....... .+++.|+.+|.+++..||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998887877776544 7999999999999999999999999975
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00067 Score=67.54 Aligned_cols=319 Identities=13% Similarity=0.193 Sum_probs=202.8
Q ss_pred hccCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864 71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (417)
Q Consensus 71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 149 (417)
-++.++-+...+.+ .++.+|..|+..+..+.+. .+....+...|++..|+.+|.+. |..+..++.+|..+++. +
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence 44667777777775 7889999999998877543 57788899999999999999875 68999999999999985 6
Q ss_pred hhHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---chHHHHHHh----------cCCHHHHHHHhcCC-C
Q 014864 150 EHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS---PRCRDLVLS----------QGGLVPLLAQLNGQ-P 214 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~---~~~~~~~~~----------~g~i~~L~~ll~~~-~ 214 (417)
+......+.|++..+..++. +.++..+.+++..++.+..+. |..+-.++. .+.-+..+..+... .
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 66677777788877777664 577889999999999997542 222111111 01123444444221 1
Q ss_pred chh------HHHHHHHHHhhhhcC-------CCCC--------------------------------------Chhhhhc
Q 014864 215 KLS------MLRNATWTLSNFCRG-------KPQP--------------------------------------PFDQVSP 243 (417)
Q Consensus 215 ~~~------~~~~a~~~l~~l~~~-------~~~~--------------------------------------~~~~~~~ 243 (417)
+++ .+......+..+... .|.. +.....+
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 222 222222222222210 0110 1112234
Q ss_pred hHHHHHHhhcCCChH--HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 244 ALPALAHLIHSNDDE--VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 244 ~l~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
.+..+.+++..++++ ...-.-.++..|....+...+.+-.-|.+|.++..+...+..+-..|++.|-.++...- ...
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHH
Confidence 555566666544322 22222233444444555555666667999999999988877777889999988886543 333
Q ss_pred HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccC-------CHHHHHHHHHH
Q 014864 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWA 393 (417)
Q Consensus 322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~-------~~~v~~~a~~~ 393 (417)
.+.....+..+++.+.. .+...--||-+|..+.. ...+-..+..+.|++|.|+.+|+.. ....+.+...+
T Consensus 2083 AMA~l~~i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~a 2160 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDA 2160 (2235)
T ss_pred HHhccccchhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHH
Confidence 34444555567777654 34455588888888875 4455666777899999999999642 23445555555
Q ss_pred HHHh
Q 014864 394 ISNA 397 (417)
Q Consensus 394 L~nl 397 (417)
|...
T Consensus 2161 Lk~~ 2164 (2235)
T KOG1789|consen 2161 LKSA 2164 (2235)
T ss_pred HHHH
Confidence 5443
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.37 E-value=6.7e-06 Score=70.94 Aligned_cols=188 Identities=17% Similarity=0.102 Sum_probs=120.3
Q ss_pred cCCChHHHHHHHHHHHHhhhCC-CCCcHHHHHH--hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC
Q 014864 83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159 (417)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g 159 (417)
.+.|+..+..|+..|+.++.+. .......+.. ..++..+...+++.. ..+...|+.++..++..-........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 5689999999999999998764 1122222221 155667777777766 789999999999998865444555544 6
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC-CCh
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPF 238 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~-~~~ 238 (417)
.+|.|+..+.++...+++.|..+|..++...+..... .+..+...+ .+.++.++..++..+..+....+. ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 7899999999999999999999999999766511111 123344444 888999999999999888876541 111
Q ss_pred ----hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014864 239 ----DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278 (417)
Q Consensus 239 ----~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 278 (417)
.....+++.+..++.+.+++|+..+-.++..+....++..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 1235688889999999999999999888888865444443
No 95
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.37 E-value=2.4e-05 Score=67.25 Aligned_cols=224 Identities=15% Similarity=0.188 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHH-hCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHH-HhcCCHHHH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLV-LSQGGLVPL 206 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~-~~~g~i~~L 206 (417)
+-.+.-|+.|+.++... ++.+..+- +...-..++.+++. +...++.+.+.+++-++.... +.+.+ --...+..+
T Consensus 163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence 56788899999999886 66665544 44455677777775 567899999999998876654 33222 122346677
Q ss_pred HHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh--hh-hchHHHHHHhhcC--CChHHHHHHHHHHHHhccCCh------
Q 014864 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QV-SPALPALAHLIHS--NDDEVLTDACWALSYLSDGTN------ 275 (417)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~-~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~------ 275 (417)
+++......+.+.+-++..+.|++...|..... .. ..+.++...++.. .|+++..+.-..=..|.....
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 777766667889999999999999854332221 12 3344544444432 356555443332222211100
Q ss_pred ------------------------HHHHHHHHc--CChHHHHhhcCCCChh-hHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864 276 ------------------------DKIQAVIEA--GVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (417)
Q Consensus 276 ------------------------~~~~~~~~~--~~~~~L~~~l~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 328 (417)
.+...+.+. .++..|..+++.+++. ...-||.-|+.+....++....+.+.|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 112233322 4577888999888766 5677999999999999999998889999
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 329 LPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
-..++.+++++ +++||.+|..++-.+..
T Consensus 401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 401 KEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 99999999999 99999999998877654
No 96
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.35 E-value=0.0002 Score=67.75 Aligned_cols=255 Identities=16% Similarity=0.138 Sum_probs=170.2
Q ss_pred CcHHHHHHhCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCC-----C
Q 014864 107 PPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP-----S 172 (417)
Q Consensus 107 ~~~~~~~~~g~i~~Lv~lL---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~ 172 (417)
...+.+.....+..|..+- ....++.+..+|++||+|+...++..++.+++.|..+.++..|+.. +
T Consensus 13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~ 92 (446)
T PF10165_consen 13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP 92 (446)
T ss_pred ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence 3445555555566666655 2233489999999999999999999999999999999999999875 7
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHhc-CCHHHHHHHhcC---------C-------CchhHHHHHHHHHhhhhcCCCC
Q 014864 173 DDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLNG---------Q-------PKLSMLRNATWTLSNFCRGKPQ 235 (417)
Q Consensus 173 ~~i~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~ll~~---------~-------~~~~~~~~a~~~l~~l~~~~~~ 235 (417)
.++.-.....|--++...+..+..+.+. +++..++..+.. . .+......++.++.|+....+.
T Consensus 93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~ 172 (446)
T PF10165_consen 93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK 172 (446)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence 7888888888888887777777666554 666666665521 0 2445677888899999887644
Q ss_pred CChhh----hhchHHHHHHhh---cCC--ChHHHHHHHHHHHHhccCChHHH-----------HHHHHcCChHHHHhhcC
Q 014864 236 PPFDQ----VSPALPALAHLI---HSN--DDEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVFPRLAEFLM 295 (417)
Q Consensus 236 ~~~~~----~~~~l~~L~~ll---~~~--~~~v~~~a~~~l~~l~~~~~~~~-----------~~~~~~~~~~~L~~~l~ 295 (417)
..... ...+++.+..++ ..+ .......++.+|.++--...... ........+..|+.+|.
T Consensus 173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld 252 (446)
T PF10165_consen 173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD 252 (446)
T ss_pred ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence 43322 234444444442 111 24567777888887732111110 00011134556666654
Q ss_pred C----C----ChhhHHHHHHHHHHhhcCChHHHHHHHH----------------cCChHHHHHhhcCCCchhHHHHHHHH
Q 014864 296 H----P----SPSVLIPALRTVGNIVTGDDMQTQCVIE----------------YQALPCLLNLLSGNYKKSIKKEACWT 351 (417)
Q Consensus 296 ~----~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~~v~~~a~~~ 351 (417)
. . -.....+.+..|.+++..+...++.+.. ..+-..|++++.+. .+.+|..+...
T Consensus 253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael 331 (446)
T PF10165_consen 253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL 331 (446)
T ss_pred HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence 2 1 1356788999999999887655554432 24456799999998 69999999999
Q ss_pred HHHHhcCCHHH
Q 014864 352 VSNITAGNREQ 362 (417)
Q Consensus 352 L~nl~~~~~~~ 362 (417)
|..+|..+...
T Consensus 332 lf~Lc~~d~~~ 342 (446)
T PF10165_consen 332 LFVLCKEDASR 342 (446)
T ss_pred HHHHHhhhHHH
Confidence 99998765543
No 97
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=4.5e-05 Score=71.81 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=148.6
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHH---HHHhhhhcCC---CC
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQ 235 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~---~~l~~l~~~~---~~ 235 (417)
..|..+..+.+..++.+|+.+|..|..... ..+. .....++++ .+.+..++..|+ |+++|.+-.+ ..
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 337777777888888888888877765322 2222 345566777 777788887774 5555555222 11
Q ss_pred CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcC------------------------------
Q 014864 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG------------------------------ 285 (417)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~------------------------------ 285 (417)
........++..+...+.+-...|+..|+.+|+.+...+++.+...++..
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 12233356677777777777777888888888777655554443333322
Q ss_pred --------------------ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHH
Q 014864 286 --------------------VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345 (417)
Q Consensus 286 --------------------~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 345 (417)
....++.-|.+.-.+||.+|+..++.++...+.... ..+..|+.+++++ ...||
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VR 427 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVR 427 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHH
Confidence 223333333333347899999999999988875544 3578899999998 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (417)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 406 (417)
..|..+|..|+.. ..++...++.++..|.+..+++|..+-..|++.-.. +.+.+
T Consensus 428 L~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~-d~~~i 481 (823)
T KOG2259|consen 428 LKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVS-DLECI 481 (823)
T ss_pred HHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-cHHHH
Confidence 9999999999764 112334577778888888888888887777765332 44433
No 98
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.4e-05 Score=73.32 Aligned_cols=202 Identities=14% Similarity=0.131 Sum_probs=145.0
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcC
Q 014864 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS 254 (417)
Q Consensus 176 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~ 254 (417)
...++.+|-.++..-...|.-+....+.+.|+++| +.++..+...+...++|+.-.. +-.......+++..+++++.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 34455566666666666777888888999999999 6677666777777777777654 333344558899999999999
Q ss_pred CChHHHHHHHHHHHHhccCChHHHH-HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChH---HHHHHHHc----
Q 014864 255 NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY---- 326 (417)
Q Consensus 255 ~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~---- 326 (417)
.|..++.+..|.+.++..+.++..+ ..+..-.+..++.+..++.+.++..++..+.|+.+.+.. ..+.+++.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 9999999999999999877654422 244555789999999999999999999999999875443 12211111
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHh
Q 014864 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALL 379 (417)
Q Consensus 327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~~l 379 (417)
-+...+++.+... +|-.-.+.|+.|.++++.+....+.+++ ..++..+.++|
T Consensus 565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 2345667777777 7777778899999999866554444443 34444444444
No 99
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00013 Score=67.57 Aligned_cols=232 Identities=16% Similarity=0.095 Sum_probs=154.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhh---CCCchH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA---GDSPRC 193 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~---~~~~~~ 193 (417)
++|.|-+-+...+ +..|...+.-|..+-.. |.....-.-...++.|..+|.+++++++..+-.+++++- ..+|..
T Consensus 168 ~ipLL~eriy~~n-~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 168 FIPLLRERIYVIN-PMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4555544444455 67777666655555443 222111111256788899999999999988888777764 222321
Q ss_pred HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChH-HHHHHHHH---HHH
Q 014864 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE-VLTDACWA---LSY 269 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~~---l~~ 269 (417)
- --...++.++..+ +++++.++..|+.-+..+..-.+..-.....+++..+++++.++++. +...+... +..
T Consensus 246 ~---d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 246 M---DYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred c---Ccccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 1 1123567777777 78889999888777777776656656666688888888888777653 43333222 222
Q ss_pred hccCChHHHHHHHHc-CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHH
Q 014864 270 LSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348 (417)
Q Consensus 270 l~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 348 (417)
++...... +. ++. .+++.+...+.++..+.+..++.-+..+-...+.+.- .....+.+.|++-|.+. +..|...+
T Consensus 322 l~s~~~~~-~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~-sd~vvl~~ 397 (675)
T KOG0212|consen 322 LVSSERLK-EE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDR-SDEVVLLA 397 (675)
T ss_pred HHhhhhhc-cc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCc-hhHHHHHH
Confidence 22211111 11 222 3678888889999999999999999888877765543 45668889999999998 99999999
Q ss_pred HHHHHHHhcC
Q 014864 349 CWTVSNITAG 358 (417)
Q Consensus 349 ~~~L~nl~~~ 358 (417)
...+.++|..
T Consensus 398 L~lla~i~~s 407 (675)
T KOG0212|consen 398 LSLLASICSS 407 (675)
T ss_pred HHHHHHHhcC
Confidence 9999999974
No 100
>PF05536 Neurochondrin: Neurochondrin
Probab=98.24 E-value=0.00021 Score=69.15 Aligned_cols=238 Identities=19% Similarity=0.175 Sum_probs=163.1
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH---HHHHHhcCCHHHHHHHhcCC------CchhHHHHHHHHHhhhh
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFC 230 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~ll~~~------~~~~~~~~a~~~l~~l~ 230 (417)
.+...+.+|++.+++-+-.++..+.+++..++.. ++.+.+.=+...+-++|... +....+.-++.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4566778888877777888888889988765532 23455555566677777331 33567788999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 309 (417)
..+.........+-+|.|+..+.+.+. .+...++.+|..++..++ ..+.+++.|.++.|...+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 965555556667889999999987766 999999999999995554 45678999999999999988 556788899999
Q ss_pred HHhhcCChHHHHH---HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HHH----HHHCCCHHHHHHHhcc
Q 014864 310 GNIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQA----VIEANIIGPLVALLEN 381 (417)
Q Consensus 310 ~~l~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~----l~~~~~i~~L~~~l~~ 381 (417)
.+++......... -.-..+++.+...+... ....+.+.|..|+++....+.. ... -+-..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 8887655421100 01124556677777666 6677889999999998754211 111 1122344555566665
Q ss_pred C-CHHHHHHHHHHHHHhhCC
Q 014864 382 A-EFDIKKEAAWAISNATSG 400 (417)
Q Consensus 382 ~-~~~v~~~a~~~L~nl~~~ 400 (417)
. .+.-|..++.....+...
T Consensus 243 r~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 4 455666666665555443
No 101
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.23 E-value=6.1e-05 Score=75.61 Aligned_cols=267 Identities=15% Similarity=0.146 Sum_probs=173.0
Q ss_pred HHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC----c
Q 014864 75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT----S 149 (417)
Q Consensus 75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~----~ 149 (417)
++.+...+.+ ...+.+..|+..|..+..-- .++..-..++|.++.++.++. .++|..|+.+|+.+...- +
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4555556655 56778888988888775322 122223456999999999998 899999999998876621 2
Q ss_pred hhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------------------chH-----------HHHHHh
Q 014864 150 EHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLS 199 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~------------------~~~-----------~~~~~~ 199 (417)
.....+.+ =++|.|-+++.+ ....++..-+..|+.+|... +.. ...+.
T Consensus 499 ~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~- 576 (1431)
T KOG1240|consen 499 SDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH- 576 (1431)
T ss_pred ccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-
Confidence 22222332 467888888877 33334444444444443211 100 00000
Q ss_pred cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHH
Q 014864 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279 (417)
Q Consensus 200 ~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 279 (417)
. .+..++.-|..++++-+++..+..|.-||.-.. ......-+++.|..+|++.|..++..-...+..++..-.-
T Consensus 577 ~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--- 650 (1431)
T KOG1240|consen 577 H-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--- 650 (1431)
T ss_pred H-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence 1 233333333356667777887777877776421 1112245688999999999999988877777766543211
Q ss_pred HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
.-++..++|.|.+-|.+..+.|...|+.++..++...--....+. .+++....+|-++ +..+|..++..+..++.
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 113445789999999999999999999999999865443332232 3566777888899 99999999999888875
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00093 Score=63.78 Aligned_cols=300 Identities=14% Similarity=0.131 Sum_probs=178.3
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
+..+.+.|.|.|+.-+..|+.++.++.+.+ ....+ ..+ ++ .+|-+++ .+-++..|+-||..+-..+|+..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-~~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-ADD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-hhh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 345555666777777888888888775432 22222 122 33 4444433 25688889999999988766432
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc------------CCCchhHHHH
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN------------GQPKLSMLRN 221 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~------------~~~~~~~~~~ 221 (417)
-..+....++++|++.+-.+...+...+--|+...++.....+-. ++..|..+.. .-+.|-++..
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 223567889999998888888888888888886655432221110 1222222221 1134556677
Q ss_pred HHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC----C---hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN----D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (417)
Q Consensus 222 a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~----~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l 294 (417)
++..|.++-.............++..++...+.+ + ......++.-.-+++.+-+..-+.+. ..+..|-+++
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl 338 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL 338 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence 7777766622111111222233444444333321 1 11222233333333332222222222 2578899999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHH
Q 014864 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIG 373 (417)
Q Consensus 295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~ 373 (417)
.+.+..+|-.|+..+..+++..... +.+-.+ .+.++..|+...+..+|+.|+-.|-.+|.. +.. .++.
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak--------~IV~ 407 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK--------QIVA 407 (938)
T ss_pred hcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH--------HHHH
Confidence 9999999999999999999875533 223333 778899999655999999999999999873 332 2456
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 374 PLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 374 ~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
.|++.|...++.+|++...=+.-++.
T Consensus 408 elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 77888888888888776655544443
No 103
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.22 E-value=5e-06 Score=59.73 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=70.0
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 118 i~~Lv~lL-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
+|.|++.| ++++ +.++..++++|+.+.. + .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 6666 9999999999995432 1 45899999999999999999999999882
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~ 227 (417)
....++.|.+++.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12278899999966667777888888874
No 104
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.9e-05 Score=73.08 Aligned_cols=239 Identities=18% Similarity=0.225 Sum_probs=149.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
+...|.+.|++.+++.++.-++--|+-..-++... ...+.+-..|..++.-.-+.|..++|-+.-++.. .
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~-- 483 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-Q-- 483 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-H--
Confidence 45666666666665666666665555544443221 2234455556555555556666666655433321 1
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH--HhccCC
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT 274 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~--~l~~~~ 274 (417)
.+++.++......++..+++-..-.++-...+.. ..+=+.+-+++.+.|+-++...+.++. +...++
T Consensus 484 ----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq-------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn 552 (929)
T KOG2062|consen 484 ----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ-------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN 552 (929)
T ss_pred ----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh-------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence 1345556655444566666554443333332211 133355667778888888877765544 333333
Q ss_pred hHHHHHHHHcCChHHHHhh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 275 ~~~~~~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
. +++..|+.+ .++.+.+|+..|+-+||-++..++++ +|..+.+|..++++.||..++.+|+
T Consensus 553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence 2 356777777 56778999999999999999888765 5667888887779999999999999
Q ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
-.|+|+...- .+..|-.+..+...-||+.|+.++.-+....
T Consensus 615 IaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 615 IACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 9998644321 2333334445666778999988888776654
No 105
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00047 Score=58.10 Aligned_cols=243 Identities=20% Similarity=0.282 Sum_probs=152.6
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhH
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 163 (417)
+....-++.|+..|+++.... . +..+.+...+++ .-.+.+.+.+|+..... .+++.
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~ 71 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPV 71 (289)
T ss_pred cHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHH
Confidence 344567778888888876421 1 444445445444 56677788888876653 57888
Q ss_pred HHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC--------
Q 014864 164 FVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-------- 233 (417)
Q Consensus 164 L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-------- 233 (417)
|+..|.. ..+-++..|..+|+++. . +. .++.+-+.. +++-..+...+..++..+-...
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence 8887765 55778888999998885 2 21 344444555 5666666666666665554322
Q ss_pred -------CCCChhhhhchHHHHHHhhcC-CChHH-HHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHH
Q 014864 234 -------PQPPFDQVSPALPALAHLIHS-NDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (417)
Q Consensus 234 -------~~~~~~~~~~~l~~L~~ll~~-~~~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~ 304 (417)
|.++ .....+.-+-..|.+ ..+.. +..++..|.|+ +.++ .+..|++-+..++.-.|..
T Consensus 140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Ee---------aI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEE---------AINALIDGLADDSALFRHE 206 (289)
T ss_pred CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHH---------HHHHHHHhcccchHHHHHH
Confidence 1111 112223334333332 22332 34455555554 2222 2455666677778888999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE 383 (417)
Q Consensus 305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~ 383 (417)
+..++|.+-+.. .+|.|.+.|.+. .++.||.+|+.+|+.++. ++ .++.|.+.+.+.+
T Consensus 207 vAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 207 VAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence 999999886432 366677766543 378999999999999975 33 4567778888888
Q ss_pred HHHHHHHHHHHHHh
Q 014864 384 FDIKKEAAWAISNA 397 (417)
Q Consensus 384 ~~v~~~a~~~L~nl 397 (417)
+-|++.+..+|.-+
T Consensus 265 ~vv~esc~valdm~ 278 (289)
T KOG0567|consen 265 RVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877554
No 106
>PF05536 Neurochondrin: Neurochondrin
Probab=98.18 E-value=0.00016 Score=69.97 Aligned_cols=235 Identities=19% Similarity=0.155 Sum_probs=157.7
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc--HHHHHHhCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI 144 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~~l 144 (417)
..+.+.+..|++.+.+-++.++-.+.+++...+... .+.+.+.-+.+.+-.+|.+.. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457889999999888888999999999987542111 223666666788888888732 256788888999999
Q ss_pred hCCCchhH--HHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHH
Q 014864 145 ASGTSEHT--KVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (417)
Q Consensus 145 ~~~~~~~~--~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~ 221 (417)
+.. ++.. ..++ +-||.|+..+.+.+. .+...|..+|..++ ..+..++.+++.|+++.|...+.+ .+.....
T Consensus 85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~ 158 (543)
T PF05536_consen 85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEI 158 (543)
T ss_pred cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence 884 4432 3334 579999999987666 99999999999999 445578899999999999999944 5566778
Q ss_pred HHHHHhhhhcCCCCC----ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH-HHHHHHc----CChHHHHh
Q 014864 222 ATWTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIEA----GVFPRLAE 292 (417)
Q Consensus 222 a~~~l~~l~~~~~~~----~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~----~~~~~L~~ 292 (417)
++.++.+++...... .......+++.+...+...........|..|..+....+.. ....... .+...+..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 888888877654321 12222455566666666555666677777777776544210 0111111 23344455
Q ss_pred hcCCC-ChhhHHHHHHHHHHhh
Q 014864 293 FLMHP-SPSVLIPALRTVGNIV 313 (417)
Q Consensus 293 ~l~~~-~~~v~~~a~~~L~~l~ 313 (417)
+|++. .+.-|.+++...+.+.
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 55543 3555666665555554
No 107
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.4e-05 Score=77.14 Aligned_cols=315 Identities=11% Similarity=0.102 Sum_probs=180.3
Q ss_pred HHHHhhhcCCChHHHHHHH-HHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC-CCchhHH
Q 014864 76 PVMVAGVWSNDSGVQYECT-TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTK 153 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 153 (417)
..+...+.+.+|+.+..++ |.|.-+-.-...+.+ ......+...+..+|.+.+ +-.|.-|.+-|+-+-. ++...++
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v-~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEV-VLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh-hhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 4445566788888877664 444322111112222 2223445688999999888 7788888776665433 2233344
Q ss_pred HHHhCCChhHHHHhhCC-----CCHHHHHH-------------HHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCc
Q 014864 154 VVIDHGAVPIFVKLLYS-----PSDDVREQ-------------AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~-----~~~~i~~~-------------a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 215 (417)
.+++ +.+..|..-=.+ .+.++.+. .-.-|+|||++-.. -..+-.++++.+.+-.
T Consensus 899 ~LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-------PdLVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 899 SLVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-------PDLVYKFMQLANHNAT 970 (1702)
T ss_pred HHHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-------hHHHHHHHHHhhhhch
Confidence 3333 233333220000 12222211 22234555533210 0123345566644445
Q ss_pred hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (417)
..-+.-|+..+..++..............+|.|.+.=.++|..|+......=.-|...+...+...... ++.-|+.-+.
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL~~lt 1049 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNE-ILDELLVNLT 1049 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHhcc
Confidence 666677777788877765444444456677777777677888887554444444555545555555554 8888999999
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH---HHHHHHHHhc--C---CHHHHHHHH
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE---ACWTVSNITA--G---NREQIQAVI 367 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~---a~~~L~nl~~--~---~~~~~~~l~ 367 (417)
+..|.+|+.+|.+|..+..+.+.....-.-..+...++..+++- .+.||+. ++.+|+.++. + ++..-+.++
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l 1128 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL 1128 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH
Confidence 99999999999999999998773221111114566677777776 7778865 4556666664 1 111122222
Q ss_pred HCCCHHHHHHH-hccCCHHHHHHHHHHHHHhhCCCCH
Q 014864 368 EANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 368 ~~~~i~~L~~~-l~~~~~~v~~~a~~~L~nl~~~~~~ 403 (417)
+ .++|.|++- +-+.-.++|..++.++..++.+...
T Consensus 1129 ~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1129 D-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred H-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 2 345544431 1145678999999999999887643
No 108
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.17 E-value=0.00025 Score=61.18 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=148.1
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC-CHHHHHHHhcCCC-chhHHHHHHHHHhhhhcCCCCC-Chhhhhc
Q 014864 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQP-PFDQVSP 243 (417)
Q Consensus 167 ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g-~i~~L~~ll~~~~-~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~ 243 (417)
+++.-++-.+..|+.++.++..... .|+..-..+ .-..++.++..+- +.+++.+.+.+++.++..+.-. .......
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444456677889999999987765 555544333 4455666664333 5788999999999888764211 1122234
Q ss_pred hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHhhcCCC---ChhhHHHHHHHHHHhhcC---
Q 014864 244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTG--- 315 (417)
Q Consensus 244 ~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~~---~~~v~~~a~~~L~~l~~~--- 315 (417)
.+.-++.++... ...|..-+|..+.++++.. .+.+..+.-.|-+..-++.|... +.+++...=++=+.+...
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 455566666544 5677888899999998733 34444344344344445555432 333322211111111110
Q ss_pred ------------------Ch---------HHHHHHH--HcCChHHHHHhhcCCCchh-HHHHHHHHHHHHhcCCHHHHHH
Q 014864 316 ------------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKKS-IKKEACWTVSNITAGNREQIQA 365 (417)
Q Consensus 316 ------------------~~---------~~~~~~~--~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~nl~~~~~~~~~~ 365 (417)
++ ...+.+. +..++..|.+++++. .+. .-.-||.-++.+....|+.+..
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEINAV 394 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchHHHH
Confidence 00 1222222 235678899999988 555 5567888899999888999998
Q ss_pred HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
+...|+=..++++++++|++|+.+|+.++.-+..
T Consensus 395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999987765
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.16 E-value=6e-06 Score=59.31 Aligned_cols=87 Identities=30% Similarity=0.481 Sum_probs=70.6
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014864 245 LPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (417)
Q Consensus 245 l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 323 (417)
+|.|++.+ .++++.++..++++|+.+. +. .+++.|+.++.++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 7889999999999999552 11 25788999999999999999999999883
Q ss_pred HHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
....++.|..++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12468889999988746677999999885
No 110
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.0033 Score=63.10 Aligned_cols=314 Identities=15% Similarity=0.118 Sum_probs=180.2
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.+..+++.+.+.|..++..|++.+.++.+..+....+++ +...++++...+.+..-..++-+|..++...----.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~v-----i~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQV-----IGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHH-----HHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 456777778889999999999999999876532223333 555555655544456677899999999874211111
Q ss_pred HHHhCCChhHHHHhhC--------CCCHHHHHHHHHHHHHhhCCCchH-HHHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864 154 VVIDHGAVPIFVKLLY--------SPSDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~--------~~~~~i~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~ 224 (417)
.+. .++|.++.-|. +....|++.|+++++.++...... -+.+.. .....|+....-+.+..+++.|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 111 34555555442 134679999999999998543321 111111 122233332224567788888888
Q ss_pred HHhhhhcCCCCCChh---------------------------hhhchHHHHHH-hh----cCCChHHHHHHHHHHHHhcc
Q 014864 225 TLSNFCRGKPQPPFD---------------------------QVSPALPALAH-LI----HSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 225 ~l~~l~~~~~~~~~~---------------------------~~~~~l~~L~~-ll----~~~~~~v~~~a~~~l~~l~~ 272 (417)
++-......++.+.. ...+....+++ ++ .+=|+.+++.++++|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 887655442222110 01122222222 22 23388999999999999986
Q ss_pred CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH---HHHH---HcC---ChHH-HHHhhcCCCch
Q 014864 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT---QCVI---EYQ---ALPC-LLNLLSGNYKK 342 (417)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~---~~~---~l~~-L~~ll~~~~~~ 342 (417)
..++ ....++++.+++...+.+...+.-+..+.|.+..+..... ..+. -++ .++. ....+..+...
T Consensus 574 ~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~ 649 (1133)
T KOG1943|consen 574 TEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGT 649 (1133)
T ss_pred hhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHH
Confidence 6554 3344678888888888887777666666665553322111 0000 012 1222 22223322123
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
-.+...+..+-++....+...+..+..+.-..+.+.+..++ .+|..|.++++.++..
T Consensus 650 lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 650 LMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 45556667777776654443333333344445555554445 7888888888887653
No 111
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.13 E-value=2.7e-05 Score=67.19 Aligned_cols=183 Identities=16% Similarity=0.178 Sum_probs=118.0
Q ss_pred cCCCchhHHHHHHHHHhhhhcCC-CCCChhhh----hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014864 211 NGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV----SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (417)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (417)
..+.+.+.+..++..|..++.+. +....... ..+++.+...+.+....+...+|.++..++..-........+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~- 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI- 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH-
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-
Confidence 36678889999999999998876 22222222 3344566677776678899999999999886544334444433
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH---HH
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR---EQ 362 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~---~~ 362 (417)
++|.|+..+.++...++..|..+|..++........ + .++.+...+.+. ++.+|..++..+..+....+ ..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence 789999999999999999999999999976661111 1 145677777877 99999999999999987544 21
Q ss_pred HHHH-HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 363 IQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 363 ~~~l-~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
...- .-..+++.+...+.+++++||..|-.++..+...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1110 0134788889999999999999999999888654
No 112
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.12 E-value=0.00019 Score=72.17 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=172.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC---CCchH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG---DSPRC 193 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~---~~~~~ 193 (417)
+++.+...+.+-...+.+..|+..|..++...... ..++ -++|.++.++.++...|+..|+.+|..+.. +-+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LD-RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLD-RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHh-hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 35566666555444678999999999988743222 1222 578999999999999999999999988763 22222
Q ss_pred HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc------------------CCCCC------Ch----hhhhchH
Q 014864 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR------------------GKPQP------PF----DQVSPAL 245 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~------------------~~~~~------~~----~~~~~~l 245 (417)
-..+...-.+|.|-.++.++....++...+..|..|+. ..++. .. ......+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 23334444666666777443444444444444444431 11111 00 1112222
Q ss_pred -HHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 014864 246 -PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324 (417)
Q Consensus 246 -~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 324 (417)
..+..++..+++-|+...+..|.-||.--.. .--+.-+++.|+.+|.+.|+.+|..-...|.-++..-..+ -.
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~ 653 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV 653 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence 3345566666777877777777777631100 0001126788999999999998887777776554322211 13
Q ss_pred HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 325 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
++.++|.|..-|.+. .+.|...|..+|.-++...--....+. .+++...-+|-+++..+|..++..|..++..
T Consensus 654 seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 456799999999999 999999999999999873221222222 3566666677889999999999998877654
No 113
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00035 Score=65.03 Aligned_cols=280 Identities=13% Similarity=0.079 Sum_probs=150.9
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhH
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 163 (417)
+.-..++..+++.+..+.... ...++++. .+..|-.+|+++. ...|+.|.++|..++-..|+... -+=+-
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~-~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-----vcN~e 344 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEEN---VGSQFVDQ-TVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-----VCNKE 344 (898)
T ss_pred CcchhhhHHHHHHHHHHHHhc---cCHHHHHH-HHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-----ecChh
Confidence 334667777777777664321 11222221 3666777777777 77888888888888775554321 11122
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhc
Q 014864 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (417)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 243 (417)
+-.++.+.+..+...|+.+|..- +..+..+.+ +..+..++ .+-+..+..-+..++..||...|......
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s~--- 413 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLSY--- 413 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHHH---
Confidence 33445555555555555544332 222222222 22222222 22233444455555666665544433332
Q ss_pred hHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014864 244 ALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (417)
Q Consensus 244 ~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 322 (417)
+..|...| +...-+...++..++..+....++..+. ++..|..++.+.. .-.-++++|+-+....+....
T Consensus 414 -l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~- 484 (898)
T COG5240 414 -LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE--YHQITVRILGILGREGPRAKT- 484 (898)
T ss_pred -HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCC-
Confidence 33333333 3446677778888888777766554432 3455666665543 122344555555443331110
Q ss_pred HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
-...+..+.+-+--. +.-+|..|..+|+.++-.-.+ .+....+...|-+++.+.|.++|..|..+|.++-.
T Consensus 485 --P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 485 --PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred --cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 011233344433334 678999999999888763211 11112345677889999999999999999999854
No 114
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0011 Score=64.23 Aligned_cols=287 Identities=14% Similarity=0.147 Sum_probs=183.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
-..|..+|.|+....+..|.+.+..+.....+ . +..+|..++...+.+ .+++..+.--|...+...+...
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA-- 106 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA-- 106 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence 46789999999889999999888877655322 2 335899999999988 8999999888888888655432
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
+ --|..+-+-|+++|+.++..|+.+|..|=.. ++.-=.+-.+-++. .++.+.+++.|+.++-.|-.-.+
T Consensus 107 L---LSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 107 L---LSINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCCh
Confidence 1 2477888999999999999999998876211 11000112222333 67889999999999999987755
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
.... ..+..+-.+|.+.++.|...|+.+.-.+|-..-+.+ ++-...+..+|.+-+.--+.-.+..|...+.
T Consensus 176 e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 176 EQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred hhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 4332 456667777888899999999999888774433222 2345667777766554445555555555542
Q ss_pred CC---hHHHHHHH----------------------Hc---CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864 315 GD---DMQTQCVI----------------------EY---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (417)
Q Consensus 315 ~~---~~~~~~~~----------------------~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (417)
.. +....... +. -++...-.+|++. ++.|...++.+.-.++-.+ +.
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~--- 320 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QV--- 320 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HH---
Confidence 11 00000000 00 1233344556666 7888888888877776532 21
Q ss_pred HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 367 ~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
..++..|+++|.+ +..+|.-.+..+..++..
T Consensus 321 --~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 321 --TKIAKALVRLLRS-NREVQYVVLQNIATISIK 351 (968)
T ss_pred --HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence 1345667776653 334555544444444443
No 115
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.06 E-value=6e-06 Score=53.25 Aligned_cols=55 Identities=27% Similarity=0.444 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (417)
Q Consensus 299 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (417)
|.+|..|+++||+++...+..... ....+++.|..+|+++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 468999999999998888877664 5557899999999988 889999999999986
No 116
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.04 E-value=0.0014 Score=60.19 Aligned_cols=235 Identities=16% Similarity=0.066 Sum_probs=159.8
Q ss_pred hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChh
Q 014864 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFD 239 (417)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~ 239 (417)
.+.+..++-+++.+++..+..++..+..+... -..+.+.+.--.++..+..+ .+..-+..|+..+..+...+. ....
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence 33344344445599999999999999888764 45566666655566666443 355567789998888887642 2223
Q ss_pred hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (417)
Q Consensus 240 ~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 319 (417)
.-.+++..++.+..+.++..+..++.+|+.++-.+++ .+...|++..|+..+.++..++....+.++-.+...+. .
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence 3477888999999999999999999999999987765 56788999999999988766677777888877775443 3
Q ss_pred HHHHHHcCChHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHH-H-CCCHHHHHHHhccCCHHHHHH
Q 014864 320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQAVI-E-ANIIGPLVALLENAEFDIKKE 389 (417)
Q Consensus 320 ~~~~~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~-~-~~~i~~L~~~l~~~~~~v~~~ 389 (417)
++++...--++.++.-+.+. .+. +--..+..++..+...=+. .-.+. + ...+..|++.|..+.+++|+.
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 34343333344444444332 022 2334455566665542111 11112 2 257889999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 014864 390 AAWAISNATSGGT 402 (417)
Q Consensus 390 a~~~L~nl~~~~~ 402 (417)
....+..+..-..
T Consensus 260 Ildll~dllrik~ 272 (371)
T PF14664_consen 260 ILDLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHHHCCCC
Confidence 9999998877653
No 117
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0017 Score=56.58 Aligned_cols=302 Identities=12% Similarity=0.141 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch----hHHHHHhCCChhHH
Q 014864 89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE----HTKVVIDHGAVPIF 164 (417)
Q Consensus 89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~i~~~g~i~~L 164 (417)
....++.+|.+++... .+ . -+..+..|.|..-|..++ ..++..++..++.+..+.+. ....+++.++.+.+
T Consensus 59 kttlcVscLERLfkak-eg-a--hlapnlmpdLQrGLiadd-asVKiLackqigcilEdcDtnaVseillvvNaeilkli 133 (524)
T KOG4413|consen 59 KTTLCVSCLERLFKAK-EG-A--HLAPNLMPDLQRGLIADD-ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI 133 (524)
T ss_pred hhhhHHHHHHHHHhhc-cc-h--hhchhhhHHHHhcccCCc-chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence 3344677777776543 11 1 112334666666667777 79999999999999886552 34456688999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHH--HHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh-hhh
Q 014864 165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL--LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQV 241 (417)
Q Consensus 165 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~ 241 (417)
+.++...+.++...|+..+..++.... .-..+.++.....+ .++. -..+.-.+......+..+..-+|.... ...
T Consensus 134 ldcIggeddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnla-akcndiaRvRVleLIieifSiSpesaneckk 211 (524)
T KOG4413|consen 134 LDCIGGEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLA-AKCNDIARVRVLELIIEIFSISPESANECKK 211 (524)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHH-hhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence 999999999999999999999987655 34555565555433 2232 222333455556666666655443322 233
Q ss_pred hchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChH
Q 014864 242 SPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDM 318 (417)
Q Consensus 242 ~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~ 318 (417)
.|.+..|..-+.. .|.-|+..++.....|+..... .+.+-+.|+++.+..++.-. +|--.-.++...+.+.....-
T Consensus 212 SGLldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeai 290 (524)
T KOG4413|consen 212 SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAI 290 (524)
T ss_pred hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHH
Confidence 5666666655544 6777888888888888754332 35667788999988888643 444444466665555533210
Q ss_pred H---HHHHHHc--CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC--HHHHHH-HhccCCHHHHHHH
Q 014864 319 Q---TQCVIEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI--IGPLVA-LLENAEFDIKKEA 390 (417)
Q Consensus 319 ~---~~~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~--i~~L~~-~l~~~~~~v~~~a 390 (417)
. -+...+. -.++..++++... ++.....|..+++.+-+.. +..+.+...|- ...++. ..+..-..-+..+
T Consensus 291 mdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaa 368 (524)
T KOG4413|consen 291 MDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAA 368 (524)
T ss_pred hhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHH
Confidence 0 0001110 2244456666777 8999999999999997643 33444444332 333333 2332222335566
Q ss_pred HHHHHHhhCC
Q 014864 391 AWAISNATSG 400 (417)
Q Consensus 391 ~~~L~nl~~~ 400 (417)
+.+|.+++..
T Consensus 369 ihaLaaIage 378 (524)
T KOG4413|consen 369 IHALAAIAGE 378 (524)
T ss_pred HHHHHHhhcc
Confidence 6677766553
No 118
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=6e-05 Score=71.00 Aligned_cols=290 Identities=17% Similarity=0.106 Sum_probs=177.5
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHH---HHHHHHhCC--Cch
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAA---WALTNIASG--TSE 150 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~---~~L~~l~~~--~~~ 150 (417)
..+....++.|+.++..|+..+..+-.+. ..- .-.....++.+++++ .+++..|+ |.++|..-. ..+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~-----~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLS-----KACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccc--ccc-----HHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccch
Confidence 33666677788888888888877663321 111 123677888999888 89998885 455555521 111
Q ss_pred h-HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc----CCCchhHHHHHHHH
Q 014864 151 H-TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWT 225 (417)
Q Consensus 151 ~-~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~a~~~ 225 (417)
. ...+.+ .++..++..+.+-+..++-.|+.+||.+-.-+.++-..-++ ..++.-+. .+..+..+..
T Consensus 273 ~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahkrpk~l~s---- 343 (823)
T KOG2259|consen 273 SEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHKRPKALYS---- 343 (823)
T ss_pred hhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhcccchHHHHh----
Confidence 1 222222 57888999999888899999999999886544433222222 22222110 0111111100
Q ss_pred HhhhhcCC------CC------CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhh
Q 014864 226 LSNFCRGK------PQ------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (417)
Q Consensus 226 l~~l~~~~------~~------~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~ 293 (417)
=...++++ |. .......|+.-.++.-|.++--+|+..|...++.|+...+.... ..+..|+++
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDM 418 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDM 418 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHH
Confidence 00111111 11 01112256666777777777789999999999999987765433 257889999
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Q 014864 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373 (417)
Q Consensus 294 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 373 (417)
+.+....+|..|+.+|..|+..- .+++.-++.+...|.+. ++++|.+.--.|++.-..+.+.+...+.
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~v~----- 486 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMCVA----- 486 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHHH-----
Confidence 99999999999999999888542 34445678888899888 8999988888888775555555544332
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 374 PLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 374 ~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
.|+..|.. -|+=+-+...++..+...
T Consensus 487 ~lL~~L~k-yPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 487 HLLKNLGK-YPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHHHHhhh-CCCCcHHHHHHHHHHhcc
Confidence 33333331 122244455555555443
No 119
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0069 Score=54.94 Aligned_cols=240 Identities=13% Similarity=0.154 Sum_probs=166.1
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-----c----hhHHHHHhCCChhH
Q 014864 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S----EHTKVVIDHGAVPI 163 (417)
Q Consensus 93 a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~i~~~g~i~~ 163 (417)
.++.+.-++.. +.....+++.++++.|+++|.+.+ .++-...+..|..++..+ . .-...+++.++++.
T Consensus 104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 34444444332 455667889999999999999999 899999999999988743 1 23566788899999
Q ss_pred HHHhhCCCCHH------HHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCC-
Q 014864 164 FVKLLYSPSDD------VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQ- 235 (417)
Q Consensus 164 L~~ll~~~~~~------i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~- 235 (417)
|++-+..-+.. -.+.++..+-|+..-.+.+...+.+.|.+..|+..+... .-.....++..+++-+......
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 99988653333 345677888899988888888999999999988855333 4455667788888877776532
Q ss_pred CChhhhhchHHHHHHhh----cCC-----ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHH
Q 014864 236 PPFDQVSPALPALAHLI----HSN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (417)
Q Consensus 236 ~~~~~~~~~l~~L~~ll----~~~-----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~ 306 (417)
.....--.++..+++-+ .++ ..+..++...+||.+....... ..+++..+++...-+++. ....+-.++
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 22222234455544443 222 2456777888888877666544 456666666655555555 455678899
Q ss_pred HHHHHhhcCCh--HHHHHHHHcCChHHHHHhhc
Q 014864 307 RTVGNIVTGDD--MQTQCVIEYQALPCLLNLLS 337 (417)
Q Consensus 307 ~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~ 337 (417)
++|-....+.+ .....+.+..++..++.+.-
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 99999998887 66666777777777776654
No 120
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0049 Score=59.08 Aligned_cols=308 Identities=18% Similarity=0.156 Sum_probs=188.3
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
+.-+.+++|.++-...+..+--.+.-++... .+..+.+ +..+..=|.+.+ +.....|+.+++|+.+ .+...
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~klv-----in~iknDL~srn-~~fv~LAL~~I~niG~--re~~e 145 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKLV-----INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE 145 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHHH-----HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence 4455666777665555555544444444221 2222222 444555555666 7888899999999876 45554
Q ss_pred HHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
.+.. -|+ ++|-+ ..+-++..++-+|..|-..+|. .+-..+....++.+| ++.+-.+...+...+..|+.
T Consensus 146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence 4442 234 55554 3456788888889888877664 333345678899999 67777778888888888887
Q ss_pred CCCCCChhhhhchHHHHHHhhc-------------CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-
Q 014864 232 GKPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP- 297 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~-------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~- 297 (417)
..|.........++..|..... -+.|.++...+++|.++-.-.+.... ..-..+++.++...+..
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPP 295 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCc
Confidence 7654443333333333333321 13577888899999888433322111 11112455555555422
Q ss_pred ---C---hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 014864 298 ---S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371 (417)
Q Consensus 298 ---~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 371 (417)
+ ...+...+.-.-+++..-+..-..+. ..+..|-.++.+. ...+|.-|.-.++.++...+ .++.+-.+
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h-- 369 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH-- 369 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--
Confidence 1 12233344444455544443333222 4577889999988 89999999999999987522 23333332
Q ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864 372 IGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQI 406 (417)
Q Consensus 372 i~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~ 406 (417)
.+.++..|+ ..|..+|+.|+..|.-++...+..++
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~I 405 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQI 405 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHH
Confidence 677788888 77999999999999999887665444
No 121
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00078 Score=69.60 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=178.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--HH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR 194 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~--~~ 194 (417)
+||.|..+=-+++ +.+|.....+..-+..++....+.... .++.-|+.-|.+....+|+.++.+|..|..+.+. ..
T Consensus 999 LIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred hhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence 4788888766777 889988888888888775555555554 6777788888888899999999999999977653 22
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHH---HHHHHhhhhcCC-----CCCChhhhhchHHHHHH-hhcCCChHHHHHHHH
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAH-LIHSNDDEVLTDACW 265 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~---a~~~l~~l~~~~-----~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~ 265 (417)
+.+. .....+.+.+ ++-.+.++.. ++.+++.+|-.. +..-......++|.|.. -+-+.-++++.-++.
T Consensus 1077 e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1077 EKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred HHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 2222 1233444555 4445556554 455566655432 22223444566666553 222566899999999
Q ss_pred HHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhH-----------HHHHHHH-HHhhcCChH--HHHHH-------H
Q 014864 266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL-----------IPALRTV-GNIVTGDDM--QTQCV-------I 324 (417)
Q Consensus 266 ~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~-----------~~a~~~L-~~l~~~~~~--~~~~~-------~ 324 (417)
++..|+........... ...+|.|+...+.-++.+. .+|+..+ .+.+.+++- .+... +
T Consensus 1154 tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred HHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence 99999987765433222 2355666666555444332 2222222 112222220 01111 1
Q ss_pred HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHH
Q 014864 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404 (417)
Q Consensus 325 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 404 (417)
-...+|.+.++++.+-.-..|..++.+++-++...+..+... .-..+..++..+++.++.+++.-..|.+.++...+++
T Consensus 1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH
Confidence 235677788888766445666677777777764211111111 1235667777778889999999999999999999888
Q ss_pred HHHHHHh
Q 014864 405 QIKYEHT 411 (417)
Q Consensus 405 ~~~~l~~ 411 (417)
+...+++
T Consensus 1312 q~qKLie 1318 (1702)
T KOG0915|consen 1312 QMQKLIE 1318 (1702)
T ss_pred HHHHHHH
Confidence 8777764
No 122
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.98 E-value=0.0076 Score=56.95 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=83.0
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH--------HHHHHHc----CChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ--------TQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
++..|+.++.+ +.+...+.+.++-+....+.. .+.+.+. .++|.+++..+.. +...|.....+|+
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHH
Confidence 45677777777 557788888888888763321 2222222 4567777777776 6668888899999
Q ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 354 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
++..+-|..+-.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999876754422222468999999999999999999999999999875
No 123
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.91 E-value=0.00056 Score=67.73 Aligned_cols=308 Identities=13% Similarity=0.089 Sum_probs=190.7
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
.+.....++....+.+...+....++....+.+....+..+.++|.+..+..+.+ ..++...+.....+.--.+ +..
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~ 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KER 433 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCc
Confidence 3444445555555555555554444433322233334455566777777777776 6777776666665544322 111
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
-+ ....|.++..+++..+.++.+..+.+..+-...+...-.......++.+..+. ......++..+.+.+..++....
T Consensus 434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence 11 13567777788888999999999888766544333223334444566666665 44478888889998888887643
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
........-+.+...+.+....++..+...+..++..... +... ...++.++....+++...|...+.++..++.
T Consensus 512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 1111122333344444444567888888777777643321 1111 1356777777777777788888888776653
Q ss_pred CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (417)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L 394 (417)
-.. +.+....++|.+..+..+. .+.||..++..|-.+...-. ....+..+.|.+..+.++.+.++|..|..++
T Consensus 587 v~g---~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~---~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 587 VLG---QEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLD---ESVRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred Hhc---cHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcc---hHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 211 2244556899999999998 99999999999998876311 1334455677777777788888888887777
Q ss_pred HHhhC
Q 014864 395 SNATS 399 (417)
Q Consensus 395 ~nl~~ 399 (417)
+.+..
T Consensus 660 ~~i~l 664 (759)
T KOG0211|consen 660 GSIEL 664 (759)
T ss_pred HHHHH
Confidence 66544
No 124
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0023 Score=63.56 Aligned_cols=281 Identities=17% Similarity=0.156 Sum_probs=167.8
Q ss_pred CCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHhCC--CchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHh
Q 014864 116 GVVPRFVEFLL------RE-DYPQLQFEAAWALTNIASG--TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186 (417)
Q Consensus 116 g~i~~Lv~lL~------~~-~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl 186 (417)
|+++.+++.+. .+ +++.-+..|+.+++++++- .+.--+...+.-.++.+...++++.--++..|+|+++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 45677777776 22 1356677788888888751 122222334445567777788888899999999999999
Q ss_pred hCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCC---hhhhhchHHHHHHhhcCCChHHHHHH
Q 014864 187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQVSPALPALAHLIHSNDDEVLTDA 263 (417)
Q Consensus 187 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~l~~L~~ll~~~~~~v~~~a 263 (417)
+...- ++...-..++....+.+..+.+-.++..|+.+|..+....+... ...+.+.+..|+++.+.-+.+....+
T Consensus 490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 84332 22222233567777888668888999999999999988754332 23335556666666666555555555
Q ss_pred HHHH-HHhccCChHHHHHHHHcCChHHHHhhcCC---CC---hhhHHHHHHHHHHhhc------CChHHHHHHHHcCChH
Q 014864 264 CWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PS---PSVLIPALRTVGNIVT------GDDMQTQCVIEYQALP 330 (417)
Q Consensus 264 ~~~l-~~l~~~~~~~~~~~~~~~~~~~L~~~l~~---~~---~~v~~~a~~~L~~l~~------~~~~~~~~~~~~~~l~ 330 (417)
+..+ +..+..-......+.+ .+.....+++.. .+ ..-...|..+|..+.+ ..+...+ -++..++|
T Consensus 568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 4433 3332211111111111 244555666653 12 2223344444433321 2222222 33456778
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864 331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 331 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 403 (417)
.+-.+|++. -.++-++++-.+.+++...++--..++ ++++.+.+++.+...+.-....-+|.|++..|.+
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence 888888887 778888999888888765433222233 3566777777766677777777777777776643
No 125
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.006 Score=55.31 Aligned_cols=243 Identities=13% Similarity=0.117 Sum_probs=171.8
Q ss_pred ccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCC----CCC----cHHHHHHhCCHHHHHHhhcCCC-----CHHHHHHHH
Q 014864 72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEAA 138 (417)
Q Consensus 72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~i~~Lv~lL~~~~-----~~~~~~~a~ 138 (417)
+.+++.++++|..++.++-...+..+..+...+ ..+ .++.+++.++++.|++-+..=+ ...-...++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 467888999999999888888888888775432 112 3667889999999999887543 122345567
Q ss_pred HHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc----C
Q 014864 139 WALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----G 212 (417)
Q Consensus 139 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~ 212 (417)
.++-|+....+.....+++.|.+.-|+.-+.. +-..-...|..++.-+..++.+.+...-..+++..+++-+. +
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 78889999889999999999888877774432 45566778999999888888878888888889999888773 1
Q ss_pred C----CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh--HHHHHHHHcCC
Q 014864 213 Q----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGV 286 (417)
Q Consensus 213 ~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~ 286 (417)
+ ...++.++...+|+.+.....+........++....-+++. ....+..++..|-+...+++ .....+++..+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 1 13567778888888777776565666666677666655554 44556778888888887776 55666777767
Q ss_pred hHHHHhhcC-CCC---------hhhHHHHHHHHHHhhcC
Q 014864 287 FPRLAEFLM-HPS---------PSVLIPALRTVGNIVTG 315 (417)
Q Consensus 287 ~~~L~~~l~-~~~---------~~v~~~a~~~L~~l~~~ 315 (417)
+..+....- .+. ...-...+..|+.+...
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 766666543 221 23445566666666543
No 126
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.87 E-value=0.0083 Score=59.22 Aligned_cols=318 Identities=11% Similarity=0.055 Sum_probs=186.2
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhH
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI 163 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 163 (417)
++.|.+...+...+.++.+.. .....+. .-++...+..+.-+..+.++..|+.+++..+. ++-..... .+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~-p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQ-PMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccc-hHHHHH
Confidence 456777777888888775542 1111111 11245555555555547888899988888774 22222222 267788
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCCCCChhhhh
Q 014864 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (417)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 242 (417)
|.++....+.++....+.+|+..+..+|++... .+..+.|..+.++. .+.|+.+...+-.++-.++... ........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 888888888999999999999999888876443 34445666665553 4567877777777777777632 22233446
Q ss_pred chHHHHHHhhcCCC----hHHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCC
Q 014864 243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 243 ~~l~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~ 316 (417)
..+|.+++.+..++ .....-++..|.-+.++.+ ...+.++.. ++|.+.++.- +++..+...+-.||..+...+
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 78999999998765 4444555555554544432 223334444 6777777754 456778888999998888877
Q ss_pred hHHHHHHHHcCChH--HHHHhhcCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHCCCHHHHH-HHhccCCHHHHHH
Q 014864 317 DMQTQCVIEYQALP--CLLNLLSGNYKKSIKKEACWTVSNIT----AGNREQIQAVIEANIIGPLV-ALLENAEFDIKKE 389 (417)
Q Consensus 317 ~~~~~~~~~~~~l~--~L~~ll~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L~-~~l~~~~~~v~~~ 389 (417)
.++...--..++.. .++..+..=-+++.-..++..+|.+. ..-+..+...++ .++..++ ++-......+-..
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae~lsviQs 770 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAETLSVIQS 770 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhhhHHHHHH
Confidence 76655444443333 33332211003333344444444443 222222221111 1222222 2333456788888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHh
Q 014864 390 AAWAISNATSGGTHEQIKYEHT 411 (417)
Q Consensus 390 a~~~L~nl~~~~~~~~~~~l~~ 411 (417)
.+.+++.++.......+..|..
T Consensus 771 Li~VfahL~~t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 771 LIMVFAHLVHTDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHHhhCCHHHHHHHHHh
Confidence 8888888887644334444443
No 127
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0086 Score=59.13 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=123.7
Q ss_pred hcCCChHHHHHHHHHHH-HhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCC
Q 014864 82 VWSNDSGVQYECTTQFR-KLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (417)
Q Consensus 82 l~s~~~~~~~~a~~~l~-~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~ 160 (417)
+.+.+...+..|++.+. .+..++ + ... ..|-+++.+.+.+ .+++.-.-.-|.+.+...|+.. +. +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-d--mss-----Lf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~--lL---a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-D--MSS-----LFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELA--LL---A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-C--hHH-----HHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHH--HH---H
Confidence 56666777788876554 444443 2 222 3777788888666 8999999989999998766332 22 4
Q ss_pred hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (417)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (417)
++.+.+=++++|+.+|..|+++++.+= . ..+. ..+++++.+++ .++++.+++.|+.++..+-+-++. ...
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~--~----~el~-~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~ 163 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR--V----KELL-GNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYH 163 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC--h----HHHH-HHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhh
Confidence 778888899999999999999999872 1 1222 22678888888 889999999999999999976432 222
Q ss_pred hhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 241 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 272 (417)
..|.+..+..++.+.||.+..+|+.++..+..
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 24567778888889999999999999988753
No 128
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.82 E-value=0.012 Score=58.18 Aligned_cols=237 Identities=15% Similarity=0.134 Sum_probs=162.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHH
Q 014864 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL 248 (417)
Q Consensus 169 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L 248 (417)
.+..+.+.-.+.|+++..+...+.....+ .-++...+..+..+..+.++..|+.+++..|. +........+++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 34667777789999997775433222221 11455666777667778888899999888883 333344446777788
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (417)
Q Consensus 249 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 326 (417)
.++......++....+.+|+..+..+++.. ...++.+.|.++.++. +++|.+...+-.++-.++.... ...-+..
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~--~~g~m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA--NYGPMQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH--hhcchHH
Confidence 888877888999999999999998877654 3455668888777754 4567666666666666554211 1112345
Q ss_pred CChHHHHHhhcCCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCC
Q 014864 327 QALPCLLNLLSGNYK----KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-ENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 327 ~~l~~L~~ll~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
..+|.++..++.+ . .....-|.-.|.-+.++.|.-....+-.-++|.+.++. +++|..+-..+..||..+...
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~- 690 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV- 690 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc-
Confidence 6799999999887 4 56677788888878875444444444446788888874 667889999999999999887
Q ss_pred CHHHHHHHHhcCc
Q 014864 402 THEQIKYEHTFCT 414 (417)
Q Consensus 402 ~~~~~~~l~~~g~ 414 (417)
+.+|+-.--..+|
T Consensus 691 ~~eq~~t~~~e~g 703 (1005)
T KOG2274|consen 691 TLEQLLTWHDEPG 703 (1005)
T ss_pred CHHHHHhhccCCC
Confidence 4565554444443
No 129
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.78 E-value=8.3e-05 Score=44.43 Aligned_cols=38 Identities=47% Similarity=0.667 Sum_probs=35.0
Q ss_pred HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 361 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
+....+++.|+++.|+.++.++++++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46677889999999999999999999999999999986
No 130
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.006 Score=61.94 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=152.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC--CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hHHHHHH
Q 014864 122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVL 198 (417)
Q Consensus 122 v~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~ 198 (417)
.....+.+...+|..+..+|..++.. +.......+. .+...|..-+++.....+...+.+|..|....+ +..+.+.
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33334443389999999999999986 2222111110 233455555555666777778888888775544 3333322
Q ss_pred hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh--cC---C-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC--RG---K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~--~~---~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 272 (417)
. .|+.++=.+ ++.+...++++..+|..++ .. . ..+....+...++.+...+-.+...+....+-++..+..
T Consensus 738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 2 233333334 6678888898888888888 21 1 222345556666666665544433333332445554443
Q ss_pred CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
...+......-.++++.+..+|.+.+++++..|+..+..++...++..-......+++.++.++++. ...+|..+-..|
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 2221111111224667777788999999999999999999998887655555556899999999888 889999999999
Q ss_pred HHHhc-CCHHHHHHHHH
Q 014864 353 SNITA-GNREQIQAVIE 368 (417)
Q Consensus 353 ~nl~~-~~~~~~~~l~~ 368 (417)
-.++. ...+.++.+..
T Consensus 894 ekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHhCHHHHHhhCH
Confidence 88886 34555555554
No 131
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.75 E-value=0.00021 Score=51.68 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHh
Q 014864 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (417)
Q Consensus 133 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~ 199 (417)
++...+.+++|++..++.....+.+.|++|.++.... ..+|-+++.|++++.|++.++++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999998664 478999999999999999999998887654
No 132
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.75 E-value=9e-05 Score=44.29 Aligned_cols=39 Identities=38% Similarity=0.758 Sum_probs=35.8
Q ss_pred chhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhh
Q 014864 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (417)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~ 187 (417)
++.+..+++.|+++.|+.++.+++++++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 447788889999999999999999999999999999996
No 133
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0017 Score=63.85 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC
Q 014864 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (417)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~ 297 (417)
-....=.+++.+..+++ ....+|.+++.+.+.|.+++.-.-.-+-..+...++..- + .+..+.+=++++
T Consensus 36 kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--L---avNti~kDl~d~ 104 (757)
T COG5096 36 KIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--L---AVNTIQKDLQDP 104 (757)
T ss_pred HHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--H---HHHHHHhhccCC
Confidence 33444456677777644 456677888888888999988777777777777764322 2 467788888999
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Q 014864 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377 (417)
Q Consensus 298 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 377 (417)
++.+|..|+++++.+-. ++ +-..+++++.+++.++ ++.||+.|+.++.++-.-+++ .+.+.|.+..+..
T Consensus 105 N~~iR~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~ 173 (757)
T COG5096 105 NEEIRGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKE 173 (757)
T ss_pred CHHHHHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHH
Confidence 99999999999988742 21 2225688999999999 999999999999999875554 3346678889999
Q ss_pred HhccCCHHHHHHHHHHHHHhhCC
Q 014864 378 LLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 378 ~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
++.+.+|.|..+|+.+|..+-..
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999888553
No 134
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=0.0049 Score=61.31 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=89.0
Q ss_pred CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014864 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281 (417)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (417)
+++.+-.+. .+.+..++...+..+..+.--.| ....+....|.+...+++.++.|+.+..+.+..+-...+..-...
T Consensus 399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 399 ILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 344444444 55566666666665555544322 333446778888888888899999999987766543333222223
Q ss_pred HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
+....++.+..+-....+.++...+..+-.++.... ..+++...-+.+..++.+. ...+++.|+..+..++.
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE 547 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence 334466777777666677788777777766664332 1233333445555555555 55666666666666654
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.70 E-value=0.00051 Score=67.47 Aligned_cols=189 Identities=17% Similarity=0.137 Sum_probs=131.0
Q ss_pred hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH-------------HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (417)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~ 227 (417)
...|+.+|++ +++-..+..++.-+..|++.+ |+.+. ..++|.+++.+ ...+...+.....+|+
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHH
Confidence 3455666654 445556666666666665433 22222 23677888888 4556667778888888
Q ss_pred hhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC---hhhHH
Q 014864 228 NFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLI 303 (417)
Q Consensus 228 ~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~---~~v~~ 303 (417)
+....-|... .......+|.|++.|.-+|..++..++.++.-+....+.....-++. ++|.++.+=.+++ ..+|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHH
Confidence 8877654422 23346778889999999999999999999988776554433333333 6777777766655 57899
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (417)
Q Consensus 304 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (417)
.|+.+|+.+...-+...-......++..|.+.|.++ ..-||++|..+=.+-
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 999999999986554444455567888999999998 899999998764443
No 136
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.69 E-value=0.0004 Score=50.27 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc
Q 014864 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381 (417)
Q Consensus 302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~ 381 (417)
|..++.+|+.++.+-.......+ ..++++++..+.++ +++||..||.+|.|++....+.+-..+ ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 45677777777766655544333 36889999999999 999999999999999874333332222 3589999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 014864 382 AEFDIKKEAAWAISNA 397 (417)
Q Consensus 382 ~~~~v~~~a~~~L~nl 397 (417)
.++.||..| +.|-++
T Consensus 80 ~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRL 94 (97)
T ss_pred CchhHHHHH-HHHHHH
Confidence 999988777 555444
No 137
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.65 E-value=0.012 Score=55.88 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=151.8
Q ss_pred cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIASGTSEHTKVVID 157 (417)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 157 (417)
.+.++.+...|+++|+|++-.. ....+.+.+.|..+.+++.|+.. + .++.+...++|.-++...+..+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 3467899999999999998764 44556688999999999999986 4 789999999999999877777766665
Q ss_pred C-CChhHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC-------
Q 014864 158 H-GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG------- 212 (417)
Q Consensus 158 ~-g~i~~L~~ll~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~------- 212 (417)
. +++..+...|.. .+......++.++-|+..+.+.... -...+.++.++.++..
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 4 677777665521 1345567788889999865543222 0122334444444321
Q ss_pred -CCchhHHHHHHHHHhhhhcCCCC------------CChhhhhchHHHHHHhhc----CC----ChHHHHHHHHHHHHhc
Q 014864 213 -QPKLSMLRNATWTLSNFCRGKPQ------------PPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLS 271 (417)
Q Consensus 213 -~~~~~~~~~a~~~l~~l~~~~~~------------~~~~~~~~~l~~L~~ll~----~~----~~~v~~~a~~~l~~l~ 271 (417)
.+.......++.+|.|+-..... .........+..|+.+|. .. -.+.....+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 12345677788888877321100 001111234445555543 11 1356778888888888
Q ss_pred cCChHHHHHHHHc----------------CChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 272 DGTNDKIQAVIEA----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 272 ~~~~~~~~~~~~~----------------~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
..+....+.+... .+-..|+.++.+..+.++..+...+-.+|..+.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 8765544433332 345678888888888888888888888875544
No 138
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.011 Score=60.16 Aligned_cols=237 Identities=13% Similarity=0.121 Sum_probs=152.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchHHHHHHh--cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 014864 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (417)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 247 (417)
+.+..+|..+..+|..++...+ +.....+ ..+.+.|.+-+ ++.....+...+.+|..|....+......+...+|-
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q~i~~I~n~L~ds~-qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPS-GEGLVEQRIDDIFNSLLDSF-QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3578899999999999987622 2221111 01223344444 556677888888898888887663333444455554
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhcc--C----ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 248 LAHLIHSNDDEVLTDACWALSYLSD--G----TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 248 L~~ll~~~~~~v~~~a~~~l~~l~~--~----~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
++-.+...|...+..+..+|..++. . .++.....++. +++.+...+-.+...+....+-+++.+.........
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444466688888888888888872 1 00111112221 333333333333444444445666666654433333
Q ss_pred HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
...-.+++..+..+|.++ ++++++.|...+.-++...|+.+-.-....++|.++.+.++....++..+-..|-.++...
T Consensus 822 ~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 333346677788888888 9999999999999999876664433334468999999888888999999999999998887
Q ss_pred CHHHHHHHH
Q 014864 402 THEQIKYEH 410 (417)
Q Consensus 402 ~~~~~~~l~ 410 (417)
..+.++.+.
T Consensus 901 g~~eLe~~~ 909 (1176)
T KOG1248|consen 901 GAEELESFL 909 (1176)
T ss_pred CHHHHHhhC
Confidence 766665554
No 139
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0086 Score=50.73 Aligned_cols=227 Identities=19% Similarity=0.254 Sum_probs=144.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
+..+.+...++........+.++.++ -....+|.|+..|...+ .|.+|.+|+.+|+++.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~------------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM------------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh------------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence 44445444444444455555555544 23446899998887544 47899999999999873 2
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH--------H----HHHhcCCHHHHHHHhcCCCchhH-HH
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--------D----LVLSQGGLVPLLAQLNGQPKLSM-LR 220 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--------~----~~~~~g~i~~L~~ll~~~~~~~~-~~ 220 (417)
..++.+-++.+++-..+++.|..++..+--.+.... . .-...+-+..+-..+.+.+.+.+ +.
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 456777778877888888888777776631110000 0 00111224444444434333333 33
Q ss_pred HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--C
Q 014864 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--S 298 (417)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~ 298 (417)
.+.+.|.|+-. ...+..|..-+..+..-++..++.+++.|-. + -.++.|.+.|.+. +
T Consensus 175 ~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~ 233 (289)
T KOG0567|consen 175 RAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEH 233 (289)
T ss_pred hhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcc
Confidence 45555555543 2456677777777778889999999988742 1 1467777777643 5
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 299 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
+-+|..|+.+||.++.. ..++.|.+.+.+. .+-|++.+..+|.-+-.
T Consensus 234 pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 234 PMVRHEAAEALGAIADE-----------DCVEVLKEYLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred hHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence 78999999999999732 2356788888888 88888888888876654
No 140
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.61 E-value=0.00063 Score=49.21 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIE 368 (417)
Q Consensus 301 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (417)
.+...++.|+|++..++.....+.+.|++|.++....-. .+|.+|+.|.|++.|++.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 466789999999999999999899999999999886432 38999999999999999999987766553
No 141
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.59 E-value=0.0036 Score=49.23 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=102.6
Q ss_pred HHHHHcCChHHHHhhcCCCC------hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHH
Q 014864 279 QAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT 351 (417)
Q Consensus 279 ~~~~~~~~~~~L~~~l~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~ 351 (417)
..+++.+++..|+.++.++. ..+...++.++..+........ ..+...++..+..+..... +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 46788889999999998765 3566667777777765543222 2455566777888887653 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q 014864 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHT 411 (417)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 411 (417)
|-+++..++...+.+-+.=-++.|+..|...+++++.+|...+.-+...++....+.+.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999878766666665669999999999999999999999999999988777666553
No 142
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.57 E-value=0.0023 Score=57.66 Aligned_cols=203 Identities=13% Similarity=0.121 Sum_probs=141.9
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH-----HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
.+...+.+..|+..|..-+-+.+..+..+++++....... .+.+... .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3445588899999999888999999999999998654333 2333322 133333344344567777777777777
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcCCCChhhHHHH
Q 014864 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA 305 (417)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~~~~~~v~~~a 305 (417)
.++...-.......+.+-.+...+..++-++..+|..++..+...+.......+.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77764323333335566667788888899999999999999776666655555554 356778888999999999999
Q ss_pred HHHHHHhhcCChHH---HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 306 ~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
+..||.+....... ..++-+..-+..++.+|++. +..++.+|..++--++++
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhC
Confidence 99999998665532 23334557788899999998 999999999999988873
No 143
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0068 Score=58.87 Aligned_cols=69 Identities=26% Similarity=0.339 Sum_probs=53.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (417)
.+.+-.++.+.. ..+..+|+.++.++...++.... .++..|-.++.++...+|-.|..+|..+|.-.|.
T Consensus 247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 455556666667 78999999999998775444332 2777888888999999999999999999976653
No 144
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0054 Score=59.25 Aligned_cols=247 Identities=17% Similarity=0.101 Sum_probs=150.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHH
Q 014864 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204 (417)
Q Consensus 125 L~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 204 (417)
|++++ +-+|-.+++.|+.+=. ++. ++ ..+|.+...|.+.+.-++.+|+.++..|-..... +--.+-+
T Consensus 108 LQHPN-EyiRG~TLRFLckLkE--~EL----le-pl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pDape 174 (948)
T KOG1058|consen 108 LQHPN-EYIRGSTLRFLCKLKE--PEL----LE-PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPDAPE 174 (948)
T ss_pred ccCch-HhhcchhhhhhhhcCc--HHH----hh-hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCChHH
Confidence 44555 5677777766666543 332 22 5678888899999999999999998888543211 1112333
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh---cCCChHHHHHHHHHHHHhccCChHHHHHH
Q 014864 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALSYLSDGTNDKIQAV 281 (417)
Q Consensus 205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (417)
.+-..|....|+...++|.-.|...-.. .++..+...+ .+-++..+.-.+..+...+...+...
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~--- 241 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK--- 241 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh---
Confidence 4445555677888888877655433221 2222232222 22345555555556665555444322
Q ss_pred HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 014864 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361 (417)
Q Consensus 282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 361 (417)
...+..+..+|.+.++.++-.|..+|-.++........ ....++.++....+-.++--..--|..+.+.+..
T Consensus 242 --~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~ 313 (948)
T KOG1058|consen 242 --ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK 313 (948)
T ss_pred --hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH
Confidence 23677888888888888888888888777654432221 1334555554443555665555555555543332
Q ss_pred HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH 410 (417)
Q Consensus 362 ~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~ 410 (417)
.. .|++-.++++|+.+|.+++..++.....++..-+.+++..+.
T Consensus 314 il-----~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~L 357 (948)
T KOG1058|consen 314 IL-----QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFL 357 (948)
T ss_pred HH-----HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 22 245666778889999999999999998888877766665444
No 145
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.54 E-value=0.0057 Score=50.28 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=76.1
Q ss_pred chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l 294 (417)
++.++.+++-+++.|+...| ..+.+.+|.+...|.++++.|+..++.+|.+|...+.-.. +..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 46788999999999998754 3457789999999999999999999999999986543221 122447788889
Q ss_pred CCCChhhHHHHHHHHHHhhcC
Q 014864 295 MHPSPSVLIPALRTVGNIVTG 315 (417)
Q Consensus 295 ~~~~~~v~~~a~~~L~~l~~~ 315 (417)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 146
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.015 Score=56.33 Aligned_cols=226 Identities=15% Similarity=0.181 Sum_probs=133.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
...+-+.|..++ .-.-..|...++-+-.++.. . .++.-+..+-.. .+.++.....-.+.-+.....+
T Consensus 451 Ye~lKevLy~D~-AvsGEAAgi~MGl~mlGt~~-~------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe---- 518 (929)
T KOG2062|consen 451 YEKLKEVLYNDS-AVSGEAAGIAMGLLMLGTAN-Q------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE---- 518 (929)
T ss_pred HHHHHHHHhccc-hhhhhHHHHhhhhHhhCcCc-H------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh----
Confidence 455555666554 33334444445544444221 1 233444444443 4555655444444433332221
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHh-hcCCChHHHHHHHHHHHHhccCCh
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
...+++.-+..+.|+-++.....++.---.+.. ..+++..|++. +++.|.+|+..|.-+|+.++..++
T Consensus 519 -----~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 519 -----DADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred -----hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 344555555477788888776665543222211 13455556655 456689999999999999987776
Q ss_pred HHHHHHHHcCChHHHHhhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (417)
+. ++..+.+|.. -++.||.-+..+||-.|.++..... +..|-.+..++ ..-||+.|+.+++-
T Consensus 588 ~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA-------i~lLepl~~D~-~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 588 EQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA-------INLLEPLTSDP-VDFVRQGALIALAM 650 (929)
T ss_pred hh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH-------HHHHhhhhcCh-HHHHHHHHHHHHHH
Confidence 53 4666777764 5899999999999999988864432 44455556666 88999999999998
Q ss_pred HhcC-CHHHHHHHHHCCCHHHHHHHhccCCHH
Q 014864 355 ITAG-NREQIQAVIEANIIGPLVALLENAEFD 385 (417)
Q Consensus 355 l~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~ 385 (417)
|... ++..... + .++...+.+.+.+.+.+
T Consensus 651 Im~Q~t~~~~pk-v-~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 651 IMIQQTEQLCPK-V-NGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHhcccccCch-H-HHHHHHHHHHhhhhhhH
Confidence 8752 2221111 1 24566666777655433
No 147
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.51 E-value=0.0093 Score=53.56 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=124.7
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC--Cc
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS 149 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~--~~ 149 (417)
.+...+..+.......+..|+..+.+++... ...+.+. ...++..+...++.+. .+-+..|+.+++-++-. ..
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 3667788888777899999999999998753 2222221 3346788888888887 56677777777666553 23
Q ss_pred hhHHHHHhCCChhHHHHhhCCC--CHHHHHHHHHHHHHhh---CCCchHHHHHHhcCCHHHHHH--HhcC---------C
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLLA--QLNG---------Q 213 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~---~~~~~~~~~~~~~g~i~~L~~--ll~~---------~ 213 (417)
.....+.+ ...|.|...+.+. +..++..|+.+|+-++ ...+......++ .+..+.. .... .
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 44445554 5778888888763 4566677777777665 333222111111 2221111 1111 1
Q ss_pred CchhHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864 214 PKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (417)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 271 (417)
+++.+...|+.+++-|...-|.... ......+|.|..+|.++|.+|+..|-.+|+-|.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2356888888888888766543222 334778999999999999999999988887664
No 148
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.49 E-value=0.0076 Score=47.44 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHhcCCCc-----hhHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhcCC--ChHHHHHHH
Q 014864 193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSN--DDEVLTDAC 264 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~--~~~v~~~a~ 264 (417)
+...++..|++..|++++.+... .++...++.++..|.... ...+... ..++..++..+... |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 45677888999999999965553 578888999999988874 3334333 56677777777654 688999999
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (417)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 319 (417)
..|-+++.+++...+.+-+.--++.|+.+|+.+++.++..|+..+-.+..+.++.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999988887777777767999999999999999999999988887655543
No 149
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.00025 Score=64.62 Aligned_cols=182 Identities=20% Similarity=0.192 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC----CCCChhhhhchHH
Q 014864 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP 246 (417)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~l~ 246 (417)
.+.-++..|+.+++-+.-+..--.+......+...++..+ .+..-..+..+.|+++|++..- |.+......-.-.
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 4445667777777776655543344444444556666666 5556678899999999998642 4433222211111
Q ss_pred HHHHhhc------CCChHHHHHHHHHHHHhccCChHHHHHHHHc-------CChHHHHhh-cCCCChhhHHHHHHHHHHh
Q 014864 247 ALAHLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-------GVFPRLAEF-LMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 247 ~L~~ll~------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-------~~~~~L~~~-l~~~~~~v~~~a~~~L~~l 312 (417)
.|..++. -++..|..++..+|+++..-- +.+.+. +-+..+... .....-+++-+||+++||+
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl----q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL----QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH----HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 1222221 235778999999999886321 111111 112222222 2234568999999999999
Q ss_pred hcCChH-HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 313 VTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 313 ~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
..+..- ....-....+++.|..++.+..+..||..|+.+|.--..
T Consensus 558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 977653 222223445677888888777689999999999987764
No 150
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0029 Score=57.93 Aligned_cols=263 Identities=16% Similarity=0.104 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchHHHHHHhcCCHHH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-----GDSPRCRDLVLSQGGLVP 205 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~~ 205 (417)
..++.++..+|.-++.+-.-.+..++ .....+...+....+.++..+..++-.+- .+.|+.-+.-...|.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 36778888888887764222222222 23344445556678889888888877664 222221111111221111
Q ss_pred ------HHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCChhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHH
Q 014864 206 ------LLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDK 277 (417)
Q Consensus 206 ------L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~ 277 (417)
.-....++.....+...|-+++++..... .-+.. -....+.+..-. .+.+.-++..|.+++.-+.-++.-.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr 425 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND-RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR 425 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence 11222244456677788888888876531 11110 011222222222 2223446677777777666665544
Q ss_pred HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc----CCh---HHHHHHHHcCChHHHHHhh--cCCCchhHHHHH
Q 014864 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDD---MQTQCVIEYQALPCLLNLL--SGNYKKSIKKEA 348 (417)
Q Consensus 278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~----~~~---~~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a 348 (417)
.....-......+...+.+..-..+..+.+++|||.. +.+ .+...+.. -.+..++..- .+..+..|+.++
T Consensus 426 ~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 426 QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHH
Confidence 4443434456667777777777889999999999974 222 12222221 1122222221 122267899999
Q ss_pred HHHHHHHhcCCHHHHHHHHH-------CCCHHHHHH-HhccCCHHHHHHHHHHHHHhhCCC
Q 014864 349 CWTVSNITAGNREQIQAVIE-------ANIIGPLVA-LLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~-------~~~i~~L~~-~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
..+|+|+.. ..+.+.+ .+-+..+.. ....+..+|+-+||++++|+..+.
T Consensus 505 vraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 505 VRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 999999864 1222222 122222222 223457899999999999999874
No 151
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.03 Score=56.54 Aligned_cols=262 Identities=14% Similarity=0.097 Sum_probs=156.6
Q ss_pred hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchH
Q 014864 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRC 193 (417)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~ 193 (417)
.+++..|.+.+++.+ ..++-.|++.++.++...|.. +.+ .+|...+.++.. .++..-..++-+|+.++..+--.
T Consensus 340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 356888888999988 799999999999999976622 222 456666665654 33555568889999998544221
Q ss_pred HHHHHhcCCHHHHHHHhcC-------CCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHH-HHhhcCCChHHHHHHH
Q 014864 194 RDLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPAL-AHLIHSNDDEVLTDAC 264 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~~-------~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L-~~ll~~~~~~v~~~a~ 264 (417)
-..+. .+++.+++-+.. +....++..|+++++.+++.. |...........+.| ...+-+.+...+..|.
T Consensus 415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 11111 145555555521 234678999999999999976 322222333343332 2334455666777777
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-hcCCCchh
Q 014864 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKS 343 (417)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~ 343 (417)
.++........+ .. .+++ |+.....-....+.++...+..-....+.....+++ .++.. +.+= +..
T Consensus 493 AAlqE~VGR~~n-~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~ 559 (1133)
T KOG1943|consen 493 AALQENVGRQGN-FP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVK 559 (1133)
T ss_pred HHHHHHhccCCC-CC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHH
Confidence 777665422111 00 0111 222222222344555555555555555544443332 22222 3444 889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
+|..++|+|.++....|+. ...+.++.|++.....+...+.-+..+.+.++..
T Consensus 560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 9999999999987655542 3347788888888888888777766666666554
No 152
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=0.0041 Score=60.59 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=148.6
Q ss_pred chHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCC-hHHHHHHHHHHHH
Q 014864 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSY 269 (417)
Q Consensus 191 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~ 269 (417)
..-+...+..|+...|+.+. ....+........+|. . .-..........++.+.+.++.+. ..-...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~--~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--G--KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--h--hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 33455677889999999998 5555566666666666 1 111122223445556665554332 2223567889999
Q ss_pred hccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHH
Q 014864 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEA 348 (417)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a 348 (417)
|+..++...+.+++...++.+-.++...++..+..++..+.|+..++.-....+.+ ...++.....+... ......++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~ 647 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAG 647 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhc
Confidence 99887777777888878888888888899999999999999999988876666666 35666666666665 77888888
Q ss_pred HHHHHHHhcCCHHHHH-HHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864 349 CWTVSNITAGNREQIQ-AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH 410 (417)
Q Consensus 349 ~~~L~nl~~~~~~~~~-~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~ 410 (417)
+.++..|+.....++. ..--......++.++.+.++.++.--+..+.|+ ..+..+-.+.+.
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~-~~~~~ei~~~~~ 709 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL-FEALFEIAEKIF 709 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH-HHHHHHHHHHhc
Confidence 8888877765444444 222345778888999999999999999999884 444444444443
No 153
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.0018 Score=65.47 Aligned_cols=164 Identities=17% Similarity=0.155 Sum_probs=124.9
Q ss_pred HHHHhhhhcCC-CCCChhhhhchHHHHHHhhc----CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-C
Q 014864 223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-H 296 (417)
Q Consensus 223 ~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~ 296 (417)
..++..+|... -......+..+.|.+++..+ .+||+++..|.-+|+.+..-+.+.. +. -+|.|+..|. +
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----es-~l~llftimeks 972 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----ES-HLPLLFTIMEKS 972 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----HH-HHHHHHHHHhcC
Confidence 34455555443 11123444667888888884 3579999999999999886654422 22 5788999998 7
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Q 014864 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV 376 (417)
Q Consensus 297 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 376 (417)
+++.+|.+++-++|.++...+...+ -+-+.|..-|.+. ++.||+.|..+|+++...+.- --.|.++.+.
T Consensus 973 p~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmi-----KVKGql~eMA 1041 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMI-----KVKGQLSEMA 1041 (1251)
T ss_pred CCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhh-----HhcccHHHHH
Confidence 8899999999999999977765444 3456788889999 999999999999999875332 2359999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 377 ALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 377 ~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.++.+++.+++.-|-..+..+...++
T Consensus 1042 ~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhccc
Confidence 99999999999999988887777763
No 154
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.39 E-value=0.00057 Score=49.46 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC
Q 014864 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298 (417)
Q Consensus 219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 298 (417)
+..++++|...+..-+.........++|.++..+.++|..|+..+|.+|.+++....+..-..+ ..+++.|..++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc
Confidence 4456677777776655555566688999999999999999999999999999876544332222 247888899999999
Q ss_pred hhhHHHHHHHHHHh
Q 014864 299 PSVLIPALRTVGNI 312 (417)
Q Consensus 299 ~~v~~~a~~~L~~l 312 (417)
+.|+..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9888766 444443
No 155
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0047 Score=57.79 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=93.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHH--hccCChHHHHHHHHcCChHHHHhh-cCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014864 247 ALAHLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (417)
Q Consensus 247 ~L~~ll~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 323 (417)
.+.+++.+.|+-++...+.+++. ...++ .|++..++.. .++.+.+++..|+-+||-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 45667777777777776655443 22222 2466777777 667788999999999999987665
Q ss_pred HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 403 (417)
..++..+++|..++++.||...+.+|+-.|+++..+. .+..|-.++.+.+.-||+.|+.+++-+...+++
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 3455667777666689999999999999998765532 234444556677778888898888887776644
No 156
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0071 Score=59.35 Aligned_cols=223 Identities=12% Similarity=0.147 Sum_probs=143.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhc
Q 014864 164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP 243 (417)
Q Consensus 164 L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 243 (417)
-+..+.++-+.++..++..|..+..... -...+...+++...+..+ .+.|+-+.-+|...+..||.-.| ..
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------ED 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hh
Confidence 3344555667889999999999997553 345667788889999999 88899999999999999998644 45
Q ss_pred hHHHHHHhh-cCCC---hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864 244 ALPALAHLI-HSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (417)
Q Consensus 244 ~l~~L~~ll-~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 319 (417)
++|-+...- +..+ ++.+-.+-.++.++...-.+......+ -++...+...++++...|..++.++|++|......
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 566666532 2221 122222224444444333332222222 35666777778888888999999999999765533
Q ss_pred HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH---HCCCHHHHHHHhcc-CCHHHHHHHHHHHH
Q 014864 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI---EANIIGPLVALLEN-AEFDIKKEAAWAIS 395 (417)
Q Consensus 320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~i~~L~~~l~~-~~~~v~~~a~~~L~ 395 (417)
....+ ..++..++.+.+.+..+-+|+.|+..+..+..+.....-.+. ..+....+...... ++..++..|+.++-
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 33222 234556666666665889999999999999876554333322 22334444444443 45567777777775
Q ss_pred Hh
Q 014864 396 NA 397 (417)
Q Consensus 396 nl 397 (417)
.+
T Consensus 961 ei 962 (982)
T KOG4653|consen 961 EI 962 (982)
T ss_pred HH
Confidence 54
No 157
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.35 E-value=0.011 Score=53.51 Aligned_cols=202 Identities=12% Similarity=0.113 Sum_probs=144.4
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh----hhhh----chHHHHHHhhcCCChHHHHHHHHH
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF----DQVS----PALPALAHLIHSNDDEVLTDACWA 266 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~----~~l~~L~~ll~~~~~~v~~~a~~~ 266 (417)
..+...+.+..|+..+ ..-+-+.++.++.++.++.+....... ..+. .++..|+..-. ++++...+-..
T Consensus 70 ~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence 3445667788888888 777889999999999999998633321 1222 23333443333 45554555555
Q ss_pred HHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchh
Q 014864 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKS 343 (417)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~ 343 (417)
|..++. .+...+.++....+..+...+..++-++...|..++..+...+.......+.. .++.....+|.++ +.-
T Consensus 147 lRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYv 224 (335)
T PF08569_consen 147 LRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYV 224 (335)
T ss_dssp HHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHH
T ss_pred HHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeE
Confidence 555554 45566778888899999999999999999999999999998888776666654 4556788888888 999
Q ss_pred HHHHHHHHHHHHhcC--CHHHH-HHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 344 IKKEACWTVSNITAG--NREQI-QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 344 v~~~a~~~L~nl~~~--~~~~~-~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
+|+.+...|+.+... +...+ +++-+..-+..++.+|.+....++.+|..++.-++..+
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 999999999999863 33333 33335566888999999999999999999999998886
No 158
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.35 E-value=0.01 Score=48.73 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC-HHHHHHH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQ 209 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~L~~l 209 (417)
+.+|..++.+++-++...+...+ ..++.+...|.++++.+|.+|+.+|..|...+. +.-.|. +..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999885454332 568899999999999999999999999985543 112233 3677888
Q ss_pred hcCCCchhHHHHHHHHHhhhhcC
Q 014864 210 LNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
+ .+++++++..|..++..+...
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHh
Confidence 8 888999999999999999987
No 159
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.017 Score=56.05 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~ 147 (417)
..+-+.|+.+++-++-..++.++++=. .+.. ...+|.+...|.+.+ +-+|..|.-++..|-..
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE---~ELl-----epl~p~IracleHrh-sYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKE---PELL-----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCc---HHHh-----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhh
Confidence 455667788888889888888887721 2222 235888999999988 89999998888887764
No 160
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.33 E-value=0.013 Score=52.64 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=115.1
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh--hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC--ChHHHHH
Q 014864 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQA 280 (417)
Q Consensus 205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~~ 280 (417)
..+..+ .+.....+..++..+.++........+. ....++..+.+.++....+-+..++.+++-++-. .......
T Consensus 47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 334444 4445778888888888888765433322 2245677788888777655555666666665443 2233344
Q ss_pred HHHcCChHHHHhhcCCCC--hhhHHHHHHHHHHhhc---CChHHHHHHHHcCChH--HHHHhhcCC---------CchhH
Q 014864 281 VIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVT---GDDMQTQCVIEYQALP--CLLNLLSGN---------YKKSI 344 (417)
Q Consensus 281 ~~~~~~~~~L~~~l~~~~--~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~--~L~~ll~~~---------~~~~v 344 (417)
+++. +.|.|...+.+.. +.+|..++.+|+-++. .........++ .+. +.....+.. .++.+
T Consensus 126 i~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 5554 6788888887664 4566777778877654 22222221111 233 112222221 13467
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 345 KKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 345 ~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
...|+.+-+-+... .+..+....+ ..+|.|..+|.+.+.+||..|..+|.-+...
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77777665666553 2323443333 4689999999999999999999998877554
No 161
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.24 E-value=0.0051 Score=60.74 Aligned_cols=190 Identities=18% Similarity=0.141 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-------------ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHH
Q 014864 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-------------PFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269 (417)
Q Consensus 203 i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-------------~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 269 (417)
...++.++. ++++-..+..+++-+..+.+.. .......++|.+++.+.+.+...+..-+.+|++
T Consensus 817 a~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 345666662 2344445555555555443211 112236789999999987777788888888888
Q ss_pred hccCChHHHHHHHH--cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCc--hhHH
Q 014864 270 LSDGTNDKIQAVIE--AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIK 345 (417)
Q Consensus 270 l~~~~~~~~~~~~~--~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~~v~ 345 (417)
+..+-+.. .+.. ..++|.|++.|+-+|..++..++.++..+....+.....- -.-++|.++.+-.++.+ ..||
T Consensus 894 Vl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~-~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH-LSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH-HhHHHHHHHhcCCCCCcchhHHH
Confidence 87665542 2222 2468888999999999999999999998887666443322 23578888888776622 6799
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
..|..+|..++..-|...-......++..|...|+++-.-+|++|..+=.+-.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 99999999999854543333445578889999999988899999988755543
No 162
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.23 E-value=0.02 Score=54.13 Aligned_cols=207 Identities=19% Similarity=0.186 Sum_probs=127.6
Q ss_pred ChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC----CCchhHHHHHHHHHhhhhcCCC
Q 014864 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----QPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 160 ~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
.+..++.+.. ..++..+..++.+++.++..-+.. + .. ...+..+...+.. ...........|+..-+.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~-~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D-DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h-hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 3444555443 345667777777777776442111 0 00 0122333332211 1234455666676666655421
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH--------HHHHHHHcC----ChHHHHhhcCCCChhhH
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND--------KIQAVIEAG----VFPRLAEFLMHPSPSVL 302 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~--------~~~~~~~~~----~~~~L~~~l~~~~~~v~ 302 (417)
......+..|+.++.+ +++...++.++..+....++ .++.+.+.. ++|.|+......+...+
T Consensus 267 ----~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 267 ----PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred ----chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 1223456677777765 66777888888888765232 233444443 45666666666666688
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Q 014864 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377 (417)
Q Consensus 303 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 377 (417)
...+.+|+.+..+-+...-.---..++|.+++-|..+ +..++..+..+|..+....++.+..-++ .+++.|++
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 8999999999998886554333347899999999988 8999999999999999877765544333 45665554
No 163
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.041 Score=51.91 Aligned_cols=211 Identities=14% Similarity=0.159 Sum_probs=119.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 197 (417)
.|.|-.+|++.. +.+..+++++++.++..+ .....++ ..+..|-.+|.++....+-.|+++|..|+...|.. ..
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~ 339 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VS 339 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--ee
Confidence 667777888777 799999999999988743 1222222 46777888899999999999999999999877642 11
Q ss_pred HhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (417)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 277 (417)
. +-+.+-.++ .+.+..+-. +++..|............-..+|.++.=+.++-.-+..++++.|+.+- +..
T Consensus 340 v---cN~evEsLI-sd~Nr~Ist---yAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k 409 (898)
T COG5240 340 V---CNKEVESLI-SDENRTIST---YAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF---PSK 409 (898)
T ss_pred e---cChhHHHHh-hcccccchH---HHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---cHH
Confidence 1 112223333 444444433 344444443222222222333333333333333445566666666553 222
Q ss_pred HHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 278 IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 278 ~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
... .+..|...|. .+..+.+..++.+|+.+....++... .++..|..++.+. +.-+-+...|+-+.
T Consensus 410 ~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL~iLG 476 (898)
T COG5240 410 KLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRILGILG 476 (898)
T ss_pred HHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHHHHhc
Confidence 111 2333443333 34566778888888888776664443 2355667777654 33334445555554
Q ss_pred c
Q 014864 357 A 357 (417)
Q Consensus 357 ~ 357 (417)
.
T Consensus 477 ~ 477 (898)
T COG5240 477 R 477 (898)
T ss_pred c
Confidence 3
No 164
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.17 E-value=0.013 Score=56.01 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=132.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH
Q 014864 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (417)
Q Consensus 119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 198 (417)
..++...+ ++ +..+..|+..+......-|+... .++..++.++.+.+..|+.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 33444444 34 78899999999998888777655 56788999999999999999999999999988765554
Q ss_pred hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc---CCChHHHHHHHHHHHH-hccCC
Q 014864 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGT 274 (417)
Q Consensus 199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~l~~-l~~~~ 274 (417)
+...|+++| +..++.-...+-++|..+...+| .+.+..+...+. +.|+.+++.++..|.. +-.-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 466889999 67776666777777777776543 344555555554 4677889888876643 22111
Q ss_pred hHHHH--HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc----CChHHHHHHHHcCChHHHHHhh------cCCCch
Q 014864 275 NDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDDMQTQCVIEYQALPCLLNLL------SGNYKK 342 (417)
Q Consensus 275 ~~~~~--~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~ 342 (417)
.+... .-.+.-++..+..+|.+-...--...+.+|..+-. .+....+.+ ++.+.... ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence 11000 00111244556667765444334445555555544 122222322 33333222 222 33
Q ss_pred hHHHHHHHHHHH----Hhc--CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864 343 SIKKEACWTVSN----ITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 343 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 403 (417)
+.......++.. +.. .+.....++.+ .++|.+-.+ +.+.+...+.++..++..+..
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~ 301 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGA 301 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCc
Confidence 333222222222 222 23334444444 466644333 446677778888777777643
No 165
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.15 E-value=0.12 Score=52.17 Aligned_cols=216 Identities=15% Similarity=0.163 Sum_probs=128.4
Q ss_pred hCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---CCCc----hhHHHHHHH
Q 014864 157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW 224 (417)
Q Consensus 157 ~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~----~~~~~~a~~ 224 (417)
+.|++..++.++.+ ....+....+..|...+ .-+.+|..+++.|+++.|+..+. +... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 35888888888865 23445555555555544 44668999999999999998874 2322 556666665
Q ss_pred HHhhhhcCCCCCCh---------h----hhhchHHHHHHhhcCC----ChHHHHHHHHHHHHhccCChHHHHHHHHcCCh
Q 014864 225 TLSNFCRGKPQPPF---------D----QVSPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287 (417)
Q Consensus 225 ~l~~l~~~~~~~~~---------~----~~~~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 287 (417)
++-.+......... . .....+..+++.+.++ ++.+....++.|-+|+.+..+..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F- 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F- 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H-
Confidence 55555443211100 0 1233466666666554 68899999999999999999888777665 2
Q ss_pred HHHHhhcCCC--ChhhHHHHHHHHHHhhcCC------hHHHHHHHHcCChHHHHHhhcCCCchh--------HH------
Q 014864 288 PRLAEFLMHP--SPSVLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNYKKS--------IK------ 345 (417)
Q Consensus 288 ~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~~~--------v~------ 345 (417)
...+++=.-+ ...--...+.++..++.+- ....+.+++.|++...+..|... .|. .+
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-CcccccCCCHHHHHHhcCC
Confidence 2222321111 0010122345555555433 35667788999999888887654 222 11
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Q 014864 346 --KEACWTVSNITAGNREQIQAVIEANIIGPLVA 377 (417)
Q Consensus 346 --~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 377 (417)
..+...|.-++.+... .+.++..++++.+-.
T Consensus 351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~ 383 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHR 383 (802)
T ss_pred cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHH
Confidence 3456666666666443 344455666654433
No 166
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.01 Score=57.96 Aligned_cols=215 Identities=13% Similarity=0.068 Sum_probs=144.0
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
++...++.+..-..+..++.+..+|..-.+.. .+. ...+++.+...+.+...-.-.++++.+++|+++.+...+
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER-----SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 45666777666666777777777776222221 111 123466666666654423345789999999999888888
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
+.+...-.++.+-.++...++.++..++..+.||..+.--+...+.+...=.++........++.+...++.++..++..
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv 657 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV 657 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence 88888777888888888899999999999999998776655556666333333333332445666666777666655544
Q ss_pred CCCC-C-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhh
Q 014864 233 KPQP-P-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (417)
Q Consensus 233 ~~~~-~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~ 293 (417)
..+. . ..........+..++.+.+.+++...+..+.++.....+....+.....++.+..+
T Consensus 658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 3221 2 33446677788889999999999999999988776666666666666555544433
No 167
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.017 Score=56.80 Aligned_cols=226 Identities=11% Similarity=0.076 Sum_probs=148.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH
Q 014864 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (417)
Q Consensus 119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 198 (417)
...+..+.++. +.++-.++..|..+.... +....+...+++...+..|.+.++-+--.|+..+..+|.--++
T Consensus 730 qeai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e------ 801 (982)
T KOG4653|consen 730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE------ 801 (982)
T ss_pred HHHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch------
Confidence 33444455555 789999999999999853 4555666668999999999999999999999988888754332
Q ss_pred hcCCHHHHHHHhcCCC---chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 199 SQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 199 ~~g~i~~L~~ll~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
.+++.+........ .++.+-....++.++...-...........+..+++.++++|...+..++..+++++....
T Consensus 802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 35666666432221 2455555667788777765444444456677788888888888889999999999986443
Q ss_pred HHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchhHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWT 351 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~ 351 (417)
......+.. ++..++.+.. ++++.+|..|+..+..+..+.....-.+... .....+........+..++..|+.+
T Consensus 880 ~~vsd~~~e-v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 880 FQVSDFFHE-VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred hhhhHHHHH-HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 222222222 4455555554 4568899999999999988776443333322 3333444444444355666667666
Q ss_pred HHHH
Q 014864 352 VSNI 355 (417)
Q Consensus 352 L~nl 355 (417)
+-.+
T Consensus 959 leei 962 (982)
T KOG4653|consen 959 LEEI 962 (982)
T ss_pred HHHH
Confidence 5544
No 168
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.04 E-value=0.061 Score=48.36 Aligned_cols=170 Identities=16% Similarity=0.053 Sum_probs=114.7
Q ss_pred CChhHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCC
Q 014864 159 GAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (417)
Q Consensus 159 g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~ 237 (417)
+.++.|+ ..+.+.++.+++.++.+||-.|--+...... .+..+...+ +..+..++..++.++..+....+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3444444 5778899999999999999998655533222 466677777 55689999999999998876542221
Q ss_pred h---------hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC----CChhhHHH
Q 014864 238 F---------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH----PSPSVLIP 304 (417)
Q Consensus 238 ~---------~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~----~~~~v~~~ 304 (417)
. ......+..+...+.+.+++++..++..++.|.-...-.. ...++..|+-..-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1 1224677888899998999999999999999754322111 01234444333322 34566766
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC
Q 014864 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339 (417)
Q Consensus 305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 339 (417)
--..+-..+..+... +..+...++|.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666777777777655 3466778888888888765
No 169
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.03 E-value=0.11 Score=46.72 Aligned_cols=171 Identities=15% Similarity=0.115 Sum_probs=108.4
Q ss_pred CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchH
Q 014864 116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRC 193 (417)
Q Consensus 116 g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~-~~~~~ 193 (417)
+++..|+ ..+.+.+ +.+|..|+.||+-.+--+.+... ..++.+...+..++..++..|+.++..+.. ++...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455555 6778888 89999999999999886553332 346667777777799999999999999873 22211
Q ss_pred HHHHH-------hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC----CChHHHHH
Q 014864 194 RDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD 262 (417)
Q Consensus 194 ~~~~~-------~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~ 262 (417)
-+... ....+..+.+.+ .+.+++++..++..++.|........ ...++..|+-+.-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11111 223455666777 56688999999999999887753333 12233333322222 24555555
Q ss_pred HHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC
Q 014864 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297 (417)
Q Consensus 263 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~ 297 (417)
....+-..+..+.... ..+...+++.+-.+....
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence 5555555565555543 444455777777766544
No 170
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.17 Score=49.49 Aligned_cols=280 Identities=16% Similarity=0.116 Sum_probs=162.5
Q ss_pred hCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhC--CCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHH
Q 014864 115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185 (417)
Q Consensus 115 ~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~n 185 (417)
.|+++.+...|... +++.-.+.|++.+.++.+ ..+.-...+.+.-+++.++..++++.--++..++..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 57899999988421 123344566677777665 334444555665677888888888888899999999999
Q ss_pred hhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh--hhhhchHHHHHHhhcCCChHHHHHH
Q 014864 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSPALPALAHLIHSNDDEVLTDA 263 (417)
Q Consensus 186 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~L~~ll~~~~~~v~~~a 263 (417)
+..+ +++..+-..+.+...+++ ++.+..++..|+-++.-+..+...... ..+.+.++.|+.+-+.-+.++...+
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 9543 334444444666777788 557888888888888888877521111 1123334444444444455655555
Q ss_pred HHHHH-HhccCC----hHHHHHHHHcCChHHHHhhcCCCC------hhhHHHHHHHHHHhhc-----CChHHHHHHHHcC
Q 014864 264 CWALS-YLSDGT----NDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT-----GDDMQTQCVIEYQ 327 (417)
Q Consensus 264 ~~~l~-~l~~~~----~~~~~~~~~~~~~~~L~~~l~~~~------~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~ 327 (417)
+..+. +.++.- .+....+++. ++.....++.+++ .+-+..|...|..+.+ .+....-.-+...
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~q-Flkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s 641 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQ-FLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS 641 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHH-HHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 54332 232211 1111111111 2223333333321 1233444444443321 1111112223446
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCH-HHHHHHHHHHHHhhCCCC
Q 014864 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF-DIKKEAAWAISNATSGGT 402 (417)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~a~~~L~nl~~~~~ 402 (417)
..|.+--++++. -.++-.+|+-.+-+.+.-..+--. +.-|+.+.+.+++.+... ..-.++.-++.|+...|.
T Consensus 642 lypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 642 LYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 677777777777 778888999888888754333221 123567777777776653 677899999999988873
No 171
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.01 E-value=0.058 Score=51.76 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC----CC-----chhHHHHHHHHHHHHhcCCHHH
Q 014864 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NY-----KKSIKKEACWTVSNITAGNREQ 362 (417)
Q Consensus 298 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~-----~~~v~~~a~~~L~nl~~~~~~~ 362 (417)
.+..+...+++++.++....... ....++.+..+|.. .. +....+...+++.+++...|+.
T Consensus 281 ~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~ 350 (556)
T PF05918_consen 281 PEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNS 350 (556)
T ss_dssp ---HHHHHHHHHHHHHTT----T----HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THH
T ss_pred ChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcch
Confidence 55678888999988886654211 11234555555421 10 2244556677888888766653
No 172
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.028 Score=54.83 Aligned_cols=260 Identities=17% Similarity=0.166 Sum_probs=136.1
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
.+.+=..+.+.+..+...|++++..+... ....+.. .+..|--+++++. +.+|+.|.++|..++...|.....
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~----~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNT----NSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhcccc----CHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence 34444566678889999999998877432 2333322 5778888899988 899999999999999865543211
Q ss_pred -------HH-hC---CChhHHHHhhCCCCH----HHHHHHHHHHHHhhCCCch-----HHHH-----HHhcCCHHHHHHH
Q 014864 155 -------VI-DH---GAVPIFVKLLYSPSD----DVREQAVWALGNIAGDSPR-----CRDL-----VLSQGGLVPLLAQ 209 (417)
Q Consensus 155 -------i~-~~---g~i~~L~~ll~~~~~----~i~~~a~~~L~nl~~~~~~-----~~~~-----~~~~g~i~~L~~l 209 (417)
++ +. =+..++..+|+.... .+..+.....++++.+... .+.. ....+.+..|-++
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 11 10 012233333433222 2222333333333221100 0000 0112223344444
Q ss_pred hcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 014864 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (417)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 289 (417)
|.++..-+..+.+..++..+....|... ..++..|..++.+. +....+...|..|....+. .......+..
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsK----e~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~---a~~Pskyir~ 470 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSK----ERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPK---APNPSKYIRF 470 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchh----hHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCC---CCCcchhhHH
Confidence 4444444555555555555554432211 23334444444322 1222223333333211110 0000123334
Q ss_pred HHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 290 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
+.+.+--.+..++..|+.++.++..+++.... .+.-.+...+.+. +.++|..|...|.++-
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 44444445667899999999999966653322 3455677778888 9999999999999997
No 173
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.00 E-value=0.064 Score=49.39 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=103.9
Q ss_pred CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHH-HHHHHhccCChHHHHH
Q 014864 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC-WALSYLSDGTNDKIQA 280 (417)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~-~~l~~l~~~~~~~~~~ 280 (417)
++..++..+.++.+...+..|+..|..+|...|..-+....-++..+++.-.+.++++...|. .|+.-++.+.+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 466778888666889999999999999999877666655555666666655555555544444 3444455454432
Q ss_pred HHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 281 ~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
.+..+..++...+......++..+..++..-....-..+-..+.|.+++..++. +..||+.|+++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 233445555557777778888888888866554333344457899999999999 99999999999999875
No 174
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.34 Score=48.95 Aligned_cols=323 Identities=13% Similarity=0.069 Sum_probs=176.1
Q ss_pred hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC--
Q 014864 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH-- 158 (417)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-- 158 (417)
.++|+--.++-.|++.+..+.+.+ ..+...-..++......|.+++.-.++.+|+-+|..+.++.+.....+...
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~d---f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp 546 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSID---FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVP 546 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh
Confidence 345566678888999999886443 111112233466666777744437899999999999998766544434332
Q ss_pred CChhHHHHhhCCCCHHHHHHHHH-HHHHhhCCCchHHHHHHhcCCHHHHHHHhcC----C-CchhHHHHHHHHHhhhhc-
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVW-ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q-PKLSMLRNATWTLSNFCR- 231 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~-~~~~~~~~a~~~l~~l~~- 231 (417)
+.+..|+++.+.-+.+....++. .++..+..-..+...+ .+......++++.. + .+.+-.-.|..+|..+..
T Consensus 547 ~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti 625 (1010)
T KOG1991|consen 547 PIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI 625 (1010)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence 45666777776533333333333 3344443322222222 22245566677742 1 122233334444433332
Q ss_pred --CC---CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHH
Q 014864 232 --GK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (417)
Q Consensus 232 --~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~ 306 (417)
.- |.........++|.+-..|.++-.++-+.++..+.+++....+....+ -|+++.+.+.+......-.....
T Consensus 626 l~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~ 703 (1010)
T KOG1991|consen 626 LLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMM 703 (1010)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHH
Confidence 11 211222234566777777777777787888887777765543322222 25677788888877767777788
Q ss_pred HHHHHhhcCChHHHHHHHHc-----CChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc
Q 014864 307 RTVGNIVTGDDMQTQCVIEY-----QALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380 (417)
Q Consensus 307 ~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~ 380 (417)
-+|.|+.+..... +... -++..+..++.+.. ...=...||..+.-+.-.....++..+. -++...+..+.
T Consensus 704 ~~l~N~vt~g~~~---~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ip-lf~~~a~~~l~ 779 (1010)
T KOG1991|consen 704 PALHNYVTYGTPS---LLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIP-LFLELALSRLT 779 (1010)
T ss_pred HHHhhheeeCchh---hhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhH-HHHHHHHHHHh
Confidence 8888876543321 2221 12334444555431 2333455777766665422222222111 12222223333
Q ss_pred c--CCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcC
Q 014864 381 N--AEFDIKKEAAWAISNATSGGTHEQIKYEHTFC 413 (417)
Q Consensus 381 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g 413 (417)
. .....+..++.++.|.........+..|-+.|
T Consensus 780 ~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~ 814 (1010)
T KOG1991|consen 780 REVETSELRVMLLEVVINALYYNPKLTLGILENQG 814 (1010)
T ss_pred ccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcC
Confidence 3 45678888888888887776666666665554
No 175
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.89 E-value=0.11 Score=44.85 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh
Q 014864 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (417)
Q Consensus 132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 210 (417)
.....|+.+|--++--.|..+..+.....+..|+.+|. ...+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34556778888888877999999999999999999995 46789999999999999999999999999999999999999
Q ss_pred cCC-CchhHHHHHHHHHhhhhcCC
Q 014864 211 NGQ-PKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 211 ~~~-~~~~~~~~a~~~l~~l~~~~ 233 (417)
+.. .+.+++-.++.+|+-.....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 644 37888888888887766554
No 176
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.86 E-value=0.039 Score=47.20 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=101.1
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHH-------hhcCCCC--h---hhHHHHHHHHHHhhcCChHHHHH
Q 014864 256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLA-------EFLMHPS--P---SVLIPALRTVGNIVTGDDMQTQC 322 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~-------~~l~~~~--~---~v~~~a~~~L~~l~~~~~~~~~~ 322 (417)
+++.++.|+.-|+.--+..++....+-.+ |.+..|+ +.+..+. . .-...|+..+..++++ ++....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 56667777777766554444444444333 4444443 2333332 1 2234455556666664 445566
Q ss_pred HHHcCChHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 323 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
++++.+.-.|..+|+... .+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.+..-.|.-|.+.+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889888888888886542 35788899999999987 6788899999999999999999999989999999999998
Q ss_pred hCCCCHHHHHHHH
Q 014864 398 TSGGTHEQIKYEH 410 (417)
Q Consensus 398 ~~~~~~~~~~~l~ 410 (417)
.. +...+.|++
T Consensus 167 L~--dd~GL~yiC 177 (262)
T PF04078_consen 167 LL--DDVGLNYIC 177 (262)
T ss_dssp HH--SHHHHHHHT
T ss_pred Hc--chhHHHHHh
Confidence 87 456566554
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.85 E-value=0.17 Score=50.75 Aligned_cols=197 Identities=21% Similarity=0.216 Sum_probs=124.2
Q ss_pred HHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchH--HHHHHhhcCCCh-H
Q 014864 182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL--PALAHLIHSNDD-E 258 (417)
Q Consensus 182 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~~~-~ 258 (417)
+|+++..+.+.....+++.|++..+...+..-.+.++...++..+.+++...+..........+ ..+..++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 4667888888888899999999999999976778899999999999999876433332222222 233334444443 7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HHHhhc
Q 014864 259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC-LLNLLS 337 (417)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~ll~ 337 (417)
....++..++.+....++....... +.+...-..++........ . +.....+.+ +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~-~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---R-VINDRSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---e-ehhhhhcchhHHHHhc
Confidence 7777777777776554431111111 1122222222222222111 1 111222333 556666
Q ss_pred CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 014864 338 GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNA 397 (417)
Q Consensus 338 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl 397 (417)
....+....-|.|++.+++..+++..+.+.+.++++.+.+.-.. ...+++.++...+.++
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 55577889999999999999888888888889999888776432 2566777776666544
No 178
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.84 E-value=0.0019 Score=48.03 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=60.2
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
.++..|+.+|..+.++.+..-||.=|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3577899999555488888999999999998777777766678999999999999999999999999988764
No 179
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.83 E-value=0.11 Score=47.79 Aligned_cols=184 Identities=10% Similarity=0.082 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh
Q 014864 215 KLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 292 (417)
..+-+..|+.-|..+........+ .....++..+++.|.+ .++..+.-+++.|..++.+......--.+ -.+..++.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence 344455555534433333222233 3346677778888877 57788889999999998876543211111 13445555
Q ss_pred hcCCCChhhHHHHHHH-HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCC
Q 014864 293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN 370 (417)
Q Consensus 293 ~l~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~ 370 (417)
.-.+.++.+...|... +.-+++..+.+. +..+..++... +...-..+...+..++.. +.+..-.++. .
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d 448 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D 448 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence 5555555555444444 344444444332 23344445445 565566666788888763 4444444443 7
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-HHHHHHH
Q 014864 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGT-HEQIKYE 409 (417)
Q Consensus 371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~l 409 (417)
+.|.+++...+....||+.|+++|.-+..... .+.-++|
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 99999999999999999999999998877655 3333444
No 180
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.79 E-value=0.039 Score=47.17 Aligned_cols=187 Identities=14% Similarity=0.129 Sum_probs=121.6
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCcHH-HH-HHhCCHHHHHHhh-------cCCC-C---HHHHHHHHHHHHHHhCCCchhH
Q 014864 86 DSGVQYECTTQFRKLLSIERSPPIE-EV-IRSGVVPRFVEFL-------LRED-Y---PQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~-~~-~~~g~i~~Lv~lL-------~~~~-~---~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+++.+..|+..|.+--.. .+... .+ -.-|.+..|++-+ +.+. . +.-...|+..|-.++++ ++.+
T Consensus 8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHH
Confidence 677899999998876433 23322 22 2556666665532 2221 0 12334556666677775 8899
Q ss_pred HHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhh-CCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864 153 KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l 226 (417)
..++++.+.-.|..+|+. +.+.++-..+.++|.+. .++++....+...++++..++.+ ...++-.+..|...+
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence 999998888777778764 23668888999999998 46677888899999999999999 555666666777777
Q ss_pred hhhhcCCC--------CCChhhhhchHHHHH-HhhcCCChHHHHHHHHHHHHhccCChH
Q 014864 227 SNFCRGKP--------QPPFDQVSPALPALA-HLIHSNDDEVLTDACWALSYLSDGTND 276 (417)
Q Consensus 227 ~~l~~~~~--------~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~l~~l~~~~~~ 276 (417)
..+..++. ...+..+..++..++ .+...+++.+...+++|...|++++..
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 66665431 112233344444433 344567889999999999999988754
No 181
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.02 Score=58.33 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=111.5
Q ss_pred ChhHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC
Q 014864 160 AVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (417)
Q Consensus 160 ~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~ 235 (417)
..|.++...+. .+++++..|.-+|+.+..-+..+... .++.|+..+..++++-++.+++-+++.|+-..|+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 45666666643 67999999999999998766554433 6889999998899999999999999999877553
Q ss_pred CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcC
Q 014864 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315 (417)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 315 (417)
.+...-+.|...|++.++.|+..|+..+++|.-++. +--.|.++.+..++.+++..++.-|=...-.++..
T Consensus 995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 335566788899999999999999999999975542 33348899999999999988887776555445433
No 182
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.68 E-value=0.0027 Score=35.06 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=26.2
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 371 IIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
++|.+++++.+++++||..|+++|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 183
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.66 E-value=0.0031 Score=46.96 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=59.3
Q ss_pred ChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 286 VFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 286 ~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
++..|+.+|. +.++.+..-||.=||.++...+.....+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 5788899994 44778888899999999999998888777789999999999999 99999999999987754
No 184
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.62 E-value=0.21 Score=42.12 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhCCC-chhHHHHHhCCCh
Q 014864 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAV 161 (417)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i 161 (417)
..-...|+..+.-++|. ++....+.+..+=-.|-.+|...+ .+-+|..++.+++.+...+ .+....+...++|
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 34455566666666654 566777888876556666665432 3679999999999999854 4556667788999
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH------HHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL------VLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~------~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
|..++.+..+++.-+..|..++..|..++.+..-. +.. .-.+..++..+.+.+++.+...++.+..+|+..
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998776543211 111 113444555554677888889999999888876
No 185
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.60 E-value=0.056 Score=49.83 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=85.7
Q ss_pred HHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh-hc--CCCChhhHHHHHHHHHHhhcCChH--
Q 014864 245 LPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FL--MHPSPSVLIPALRTVGNIVTGDDM-- 318 (417)
Q Consensus 245 l~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-~l--~~~~~~v~~~a~~~L~~l~~~~~~-- 318 (417)
.+.+-+-+...| ..-+..|+..+..|+.........++.. .+..++. .- .+.++.-+..|++.++.++.....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~ 290 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK 290 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence 344444444333 4456778888888876544333222221 2222222 11 134678888999999999875532
Q ss_pred ----------HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHH
Q 014864 319 ----------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (417)
Q Consensus 319 ----------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 388 (417)
....++...++|-|. - .....+-++..|++.+..+-..-+.. .+. +++|.++..|.+++.-|..
T Consensus 291 ~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~~--~l~--~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 291 SGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPKE--QLL--QIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp TB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HH--HHH--HHHHHHHHHTTSS-HHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCHH--HHH--HHHHHHHHHhCCCCcchhh
Confidence 234455566666665 1 22237889999999999998743321 222 4899999999999999999
Q ss_pred HHHHHH
Q 014864 389 EAAWAI 394 (417)
Q Consensus 389 ~a~~~L 394 (417)
.|+.++
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 998875
No 186
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.55 E-value=0.026 Score=38.18 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcC
Q 014864 345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKYEHTFC 413 (417)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g 413 (417)
.+.|.|+++++++. +.-+..+.+.++++.++++.. ++...+|-.|.++|+-++. +.+-.+.|-+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999874 556677777899999999987 4568999999999999887 556666666554
No 187
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.53 E-value=0.82 Score=43.97 Aligned_cols=286 Identities=13% Similarity=0.105 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (417)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (417)
..+..|+..++..+...+-..+..+ ...--.++.....++.|..+...|..+..+......... ..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHH
Confidence 4567777788777665433222222 223334555555578888888888888886543211111 122333
Q ss_pred hC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC--------------------------CchhHHH
Q 014864 168 LY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ--------------------------PKLSMLR 220 (417)
Q Consensus 168 l~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~--------------------------~~~~~~~ 220 (417)
+. ...++-...-+.+|..|+.++... ...+.+..+.|..-+... .+.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 33 334444556667777777666544 224566666666555110 0222334
Q ss_pred HHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHhhcC
Q 014864 221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLM 295 (417)
Q Consensus 221 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~~l~ 295 (417)
.....+.|+.... .......+.+.+..++.+.. +.++.....++..+-.+.. -+.+.... ++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~-----~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSP-----CIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHH-----HHHHHhhHh-
Confidence 4444445555443 22233344445555444432 2223333333333222221 11111111 122222221
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHH-HHHHHHC
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQ-IQAVIEA 369 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~ 369 (417)
...+....+-.++.||+...-... .+..|..+|.++ .+..+.+-|...+..+..+..++ ...+--.
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 222566778888888886544322 356677788322 14566778889999888765322 2222222
Q ss_pred C--CHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 370 N--IIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 370 ~--~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
- +++.+...++.+++.+-.+.+..+.++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 2 78888899998888888888888888773
No 188
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.52 E-value=0.03 Score=46.52 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=79.0
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHh
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA 145 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--------~~~~~~~~a~~~L~~l~ 145 (417)
....+++.+.+..... ..+..|+..+......-++.+++.|++..|+.+|..- .......+++.||..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4567788887765433 5566666666553223356788999999999988631 23688999999999998
Q ss_pred CCCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhh
Q 014864 146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (417)
Q Consensus 146 ~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~ 187 (417)
.. ......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus 145 n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 86 444555554 689999999999999999999999999886
No 189
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.77 Score=42.91 Aligned_cols=255 Identities=12% Similarity=0.030 Sum_probs=132.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC
Q 014864 124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (417)
Q Consensus 124 lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~ 202 (417)
-..+++ ..++..|+.+|++.+++-|........ -.+..++.-| +..+.+|+-.++.+|..+...-.. .-+..+.
T Consensus 266 ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~~~ 340 (533)
T KOG2032|consen 266 KATDPS-AKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLESYL 340 (533)
T ss_pred hccCch-hHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhhhc
Confidence 334555 689999999999999986655544443 3344555544 446688988899888887643221 1112223
Q ss_pred HH---HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh----hhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 203 LV---PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ----VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 203 i~---~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
++ .+-.+. ++.+.+++.++...+..|+.......... +.+....++-.|.++++.+ ..||......+.-.-
T Consensus 341 l~ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l 418 (533)
T KOG2032|consen 341 LNIALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNL 418 (533)
T ss_pred hhHHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchh
Confidence 33 344444 77788899888888887776542222211 2222233333445566655 456666666553221
Q ss_pred HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH--HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT--VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~--L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
. .+.. .++++... +.+.. +..+... .-.+....++...... .....++++. -+.+|..+...-.
T Consensus 419 ~-rke~--~~~~q~~l----d~~~~-~~q~Fyn~~c~~L~~i~~d~l~~~~-----t~~~~~f~ss-we~vr~aavl~t~ 484 (533)
T KOG2032|consen 419 V-RKEL--YHLFQESL----DTDMA-RFQAFYNQWCIQLNHIHPDILMLLL-----TEDQHIFSSS-WEQVREAAVLKTT 484 (533)
T ss_pred H-HHHH--HHHHhhhh----HHhHH-HHHHHHHHHHHHHhhhCHHHHHHHH-----Hhchhheecc-hHHHHHHHHHHHH
Confidence 1 1111 11222221 11100 1111100 0011112222222111 1223334444 4567777766666
Q ss_pred HHhcCC-HHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 354 NITAGN-REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 354 nl~~~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
+..... +......--.-+...|-.+..++-++++..|..|+..+..
T Consensus 485 ~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 485 RSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 665432 2222222222345566666778889999999999887654
No 190
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.42 E-value=0.0042 Score=34.27 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.6
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
++|.+.++++++ +++||..|+++|+.++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 378899999999 99999999999999975
No 191
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=1.9 Score=45.97 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHhhcCCh-----------HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864 300 SVLIPALRTVGNIVTGDD-----------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~-----------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (417)
......+.++|-++++.+ .+....+..+++..|..+.+.. +..+|..|...|+.+|...|. ++.+
T Consensus 1187 p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~ 1262 (1692)
T KOG1020|consen 1187 PKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTS 1262 (1692)
T ss_pred HHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhh
Confidence 455678888999987321 1112244567777788888888 899999999999999986554 3444
Q ss_pred CCCHHHHHHHhccCCH
Q 014864 369 ANIIGPLVALLENAEF 384 (417)
Q Consensus 369 ~~~i~~L~~~l~~~~~ 384 (417)
..+...+...|.+.+.
T Consensus 1263 ~~v~nly~~ila~~n~ 1278 (1692)
T KOG1020|consen 1263 REVLNLYDEILADDNS 1278 (1692)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 4555566666665543
No 192
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.30 E-value=0.45 Score=40.20 Aligned_cols=138 Identities=16% Similarity=0.218 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-----ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHH
Q 014864 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-----SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLL 333 (417)
Q Consensus 260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~ 333 (417)
..+++..+..++.+++ ....++++.+--.+..+|... .+..|..++..||.+...++ +....++..+++|..+
T Consensus 96 VcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3456666666666654 455678887777777877643 46789999999999997665 5566677889999999
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------CCCHHHHHH-HhccCCHHHHHHHHHHHHHhhCC
Q 014864 334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------ANIIGPLVA-LLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 334 ~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~L~~-~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
+.+..+ ++.-+..|.+++..|...+. ...++.. ..++..++. +.+.+++.+-+.++.+..++...
T Consensus 175 rime~G-SelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMESG-SELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhcc-cHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999 89999999999999876421 2222221 123333333 34567889999999999998774
No 193
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.15 Score=48.27 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=105.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhh
Q 014864 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242 (417)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 242 (417)
.+-.++.+.++-++...+.+++.--.+.. ..|++..++...-++.+.++++.|+-+|..+|..++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 34456777788888888777764332222 234677777774477889999999999999998764
Q ss_pred chHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 243 PALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 243 ~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
..++..+++|. +.+..|+...+.+|+-.|.+...+. .+..|-.++.++..-+|..|+-+++.|...+.+...
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 34555566664 4588899999999998888776543 345566677788888999999999999765432211
Q ss_pred HHHHcCChHHHHHhhcCC
Q 014864 322 CVIEYQALPCLLNLLSGN 339 (417)
Q Consensus 322 ~~~~~~~l~~L~~ll~~~ 339 (417)
. --.++...+..++.+.
T Consensus 658 p-~v~~I~k~f~~vI~~K 674 (926)
T COG5116 658 P-NVKRIIKKFNRVIVDK 674 (926)
T ss_pred h-hHHHHHHHHHHHHhhh
Confidence 0 1124455566666544
No 194
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.15 E-value=0.71 Score=40.58 Aligned_cols=202 Identities=12% Similarity=0.102 Sum_probs=141.6
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC---Chhhh---hchHHHHHHhhcCCC-hHHHHHHHHHH
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP---PFDQV---SPALPALAHLIHSND-DEVLTDACWAL 267 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~---~~~l~~L~~ll~~~~-~~v~~~a~~~l 267 (417)
..+...|.+..+++.+ ..-+-+.+..++.+..++-+..-.. ..... ...+..|+.- ..+ +++.-.+-..+
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHH
Confidence 3456778888889888 7777888899999999988765211 12222 2333333333 122 33333332233
Q ss_pred HHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCC----hHHHHHhhcCCCchh
Q 014864 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA----LPCLLNLLSGNYKKS 343 (417)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~ 343 (417)
..+. ..+...+.+..+.-+.....+++.+.-++...|..+...+.+........++..+. .+..-.++.++ +.-
T Consensus 150 rEci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyv 227 (342)
T KOG1566|consen 150 RECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYV 227 (342)
T ss_pred HHHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-cee
Confidence 3322 34445566777778888888888888889999999999998888777766665544 34466678888 999
Q ss_pred HHHHHHHHHHHHhcC--CH-HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 344 IKKEACWTVSNITAG--NR-EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 344 v~~~a~~~L~nl~~~--~~-~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
.++.+...++.+.-+ +. ...+++-+..-+..++.+|.++...++.+|-.+..-++...
T Consensus 228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999999999863 22 33444445567889999999999999999999999888875
No 195
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.07 E-value=0.42 Score=41.92 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=135.3
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH----HHHhcCCHHHHHHHhcCCC-chhHHHHHHHHHhh
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD----LVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSN 228 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~----~~~~~g~i~~L~~ll~~~~-~~~~~~~a~~~l~~ 228 (417)
.+.++|.+..|+..+...+-+-+..++.+..|+-...-+.+. .+.. -.+.+-.++.... .+++.-.+...+..
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 455679999999999888888888888888887643322222 2211 1223333332223 25555555555555
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCC----hHHHHhhcCCCChhhHHH
Q 014864 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIP 304 (417)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~~l~~~~~~v~~~ 304 (417)
..+...-.........+......++.+.-++..+|..+...+.......+..++..+. .+.--.++.+.+.-++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 5554332333333555666667777777788899999988887666555555555433 333566788888889999
Q ss_pred HHHHHHHhhcCCh---HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 305 ALRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 305 a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
++..+|.+..+.+ ..++++-...-+..+..+|+++ +..++-+|..+..-+.++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcC
Confidence 9999999986654 3445454557788999999999 999999999998888873
No 196
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.03 E-value=0.15 Score=43.88 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh
Q 014864 89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168 (417)
Q Consensus 89 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll 168 (417)
....|+..|.-++--+ ++....+.+...+..|+.+|.....+.++..++.+|..+.-+++.+.+.+-+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 4555778888776664 566666778889999999996554489999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHHhhCC
Q 014864 169 YS--PSDDVREQAVWALGNIAGD 189 (417)
Q Consensus 169 ~~--~~~~i~~~a~~~L~nl~~~ 189 (417)
++ .+.+++-.++..|.-+...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 86 5677877787777666543
No 197
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.02 E-value=0.42 Score=48.47 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=129.7
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHH
Q 014864 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156 (417)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 156 (417)
.+-..+.+.++..+..|+..+...++... ....-...|.+-.++.....+.+..+...|+.+|..++...........
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 34445668899999999999999886542 1111223445555666555444488999999999999987555443333
Q ss_pred hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC--
Q 014864 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-- 234 (417)
Q Consensus 157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-- 234 (417)
. +..|.|+..+......+++.+..++-.++...+. ....+.++..+ .+.++.+...+...+........
T Consensus 335 ~-~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 335 K-NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred H-hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence 3 7889999999988888888888777766653221 11355666666 88888888876666665555432
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 272 (417)
..........+|.++....+.+.+|+..+..+++-+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23345568889999999999999999999988887654
No 198
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.98 E-value=0.095 Score=55.05 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=108.2
Q ss_pred HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCCh
Q 014864 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299 (417)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 299 (417)
.++.|+...++...+ -.....+++..++..+..+-..++..|+.||+.+...++.. +....+-..+..-+.+...
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 445555555554422 12223577888888889888999999999999998877642 1222233444555667778
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l 379 (417)
.||..|+..+|......++.... ....+.+-+.++ ...||+.+...+..+|...|+.-. +. .+...++.-.
T Consensus 870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~--~~cakmlrRv 940 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IV--DMCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HH--HHHHHHHHHh
Confidence 99999999999988777755443 355677777777 889999999999999986664211 11 1122222333
Q ss_pred ccCCHHHHHHHHHHHHHh
Q 014864 380 ENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 380 ~~~~~~v~~~a~~~L~nl 397 (417)
++.+..+++-++.++.++
T Consensus 941 ~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 344444777777777665
No 199
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.98 E-value=0.028 Score=45.05 Aligned_cols=148 Identities=18% Similarity=0.133 Sum_probs=96.7
Q ss_pred CHHHHHHHhcC-CCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHH
Q 014864 202 GLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280 (417)
Q Consensus 202 ~i~~L~~ll~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 280 (417)
.+..++..+.. ...++++..+.-++..+... ........+-..+..++...+.+-...++.++..+-...++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34556666644 55677888888888777411 111112233344445555544455667778888887777765555
Q ss_pred H-HHcCChHHHHhhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchh-HHHHHHHHHHH
Q 014864 281 V-IEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKKEACWTVSN 354 (417)
Q Consensus 281 ~-~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~n 354 (417)
+ ...|+++.++.++. ..+..++..++.+|..-|.. +.....+...+++.|-.+++.+.+.. +|..|+-+|+.
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4 46689999999998 77888889999998766633 33334556678999999996553566 88888887764
No 200
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.98 E-value=0.065 Score=43.00 Aligned_cols=147 Identities=11% Similarity=0.057 Sum_probs=88.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
..++.|+.+|+++....+|.+++++|+.+..-+|...+.+... .+.-. -...+........... ++... .+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~----~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPS----SE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCc----hH
Confidence 3578899999988768999999999999988766554433221 11000 0111111222111111 11111 12
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 271 (417)
......++..|++.+.+..-..-...++.++.++..............++|.++..+++.++..++...+-|+.|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2233346788888885544445555677777777755444446667889999999998777777777776666653
No 201
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.12 Score=45.15 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=107.5
Q ss_pred hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
...+...+..|.++|.+...+++..+..|+....+.....+.. ++-.+++-+++....+-..||.+++.+.+.-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778888899999999999999988777665555554 677788888888888999999999999876554444
Q ss_pred HHHHcCChHHHHHhh-cCC--CchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 322 CVIEYQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 322 ~~~~~~~l~~L~~ll-~~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
.. ++.++..| ... .+.-|+..|-.+|..++.. .|. .+++.|+..+.+.++.++..++.++.++
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 32 22233332 221 1567899999999998864 332 3567777888888999999999999888
Q ss_pred hCCC
Q 014864 398 TSGG 401 (417)
Q Consensus 398 ~~~~ 401 (417)
....
T Consensus 233 v~rl 236 (334)
T KOG2933|consen 233 VIRL 236 (334)
T ss_pred ceec
Confidence 7765
No 202
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.86 E-value=1.1 Score=39.18 Aligned_cols=226 Identities=12% Similarity=0.090 Sum_probs=137.8
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (417)
..|-..|.++++.+|..|+..|+.+...-+.. .+...-+..|+..+.+. .|......++.++..|...+ ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 34556788899999999999999988665521 12222345555555321 35556666677777777543 222222
Q ss_pred hhchHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-CChhhHHHHHHHHHHhhcCCh
Q 014864 241 VSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 241 ~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~ 317 (417)
...++..+.+-... -....|..+...+..+.....+....+ ..+++..++..+.. .||.....+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 34444444443322 235677788888888876654433222 23467777777764 478877778777777765544
Q ss_pred HHHHHHHHcCChHHHHHhhc--------CCC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864 318 MQTQCVIEYQALPCLLNLLS--------GNY-KK--SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (417)
Q Consensus 318 ~~~~~~~~~~~l~~L~~ll~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 386 (417)
. ....+-+.+.+. .+. ++ -.+..-...|.++...++... .-.+|.|++-|.++.+.+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence 1 122333333331 111 22 244455556666666555432 347899999999999999
Q ss_pred HHHHHHHHHHhhCCCCHH
Q 014864 387 KKEAAWAISNATSGGTHE 404 (417)
Q Consensus 387 ~~~a~~~L~nl~~~~~~~ 404 (417)
|..++.+|..++..-+..
T Consensus 225 K~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGAD 242 (262)
T ss_pred HHHHHHHHHHHHHHCCHH
Confidence 999999999988764443
No 203
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.77 E-value=0.52 Score=43.59 Aligned_cols=265 Identities=18% Similarity=0.128 Sum_probs=139.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHH-HHHhhCCCchHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWA-LGNIAGDSPRCRD 195 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~-L~nl~~~~~~~~~ 195 (417)
+..+++=+.+.....+|..++--|+.-+.+ ++.+..+..+|.+..+++.+.+ ++..+...++.+ +.-++.+.. ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 455555556444468888888888888874 9999999999999999999954 444344444444 444444543 344
Q ss_pred HHHhcCCHHHHHHHhc--CC----Cchh-----HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc---------CC
Q 014864 196 LVLSQGGLVPLLAQLN--GQ----PKLS-----MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---------SN 255 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~--~~----~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~---------~~ 255 (417)
.+...+....+++++. .. .+.. ........+.. .+...+. ..
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 162 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRS------------------LCKELLSSGSSWKSPKPP 162 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHH------------------HHHHHHhccccccccCCc
Confidence 4445555666677774 11 0000 00011111111 1111110 00
Q ss_pred ChHHHHHHHHHHHHhc--------------cCChHHHHHHHHcCChHHHHhhcCC----C-------C-----hhhHHHH
Q 014864 256 DDEVLTDACWALSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLMH----P-------S-----PSVLIPA 305 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~--------------~~~~~~~~~~~~~~~~~~L~~~l~~----~-------~-----~~v~~~a 305 (417)
...-+.-++.++-.++ ...+...+.+...|++..++..+.. . + ......+
T Consensus 163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c 242 (361)
T PF07814_consen 163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC 242 (361)
T ss_pred ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence 0111112222222221 1111123345556777777777641 1 1 1234568
Q ss_pred HHHHHHhhcCChHHHHHHHHc--CChHHHHHh-hcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH---
Q 014864 306 LRTVGNIVTGDDMQTQCVIEY--QALPCLLNL-LSGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA--- 377 (417)
Q Consensus 306 ~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~l-l~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~--- 377 (417)
+++|-+.+..+.....+.+.. +.++.+... +... ....+...++.++.|++-.+|.....+...++...+..
T Consensus 243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~ 322 (361)
T PF07814_consen 243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVT 322 (361)
T ss_pred HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHH
Confidence 888888877666555545433 333333222 2221 03344578889999999888766655554333222111
Q ss_pred ---Hh-c-------cCCHHHHHHHHHHHHHhhCCCC
Q 014864 378 ---LL-E-------NAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 378 ---~l-~-------~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.+ . ....+...-++.++.|++.+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 323 SFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred hhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence 11 1 1235788889999999988753
No 204
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.72 E-value=0.075 Score=42.57 Aligned_cols=146 Identities=17% Similarity=0.132 Sum_probs=98.4
Q ss_pred HHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 75 l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
++.++..|.. ..++++..++-++.++.... ..-...-+-+.+-..+...+ .+-...++.++..+-.+.++..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-----~~~~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAA-----REEFKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHH
Confidence 4566666653 66788888888888885221 11112222344444555544 4577888999999999888877
Q ss_pred HHHHh-CCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchh-HHHHHHHHHhh
Q 014864 153 KVVID-HGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSN 228 (417)
Q Consensus 153 ~~i~~-~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~a~~~l~~ 228 (417)
..++. .|.++.+..++. ..+..++..++.+|..-|.+. .+|..+.+. +++.|-..+..+++.. ++..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 77764 588899999998 678888888888887766554 477776665 6788888885566555 66666655543
No 205
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.67 E-value=1.1 Score=38.65 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=115.9
Q ss_pred hHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864 162 PIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (417)
Q Consensus 162 ~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (417)
+.|+. +-+..+++.+...+.+|..++.+...+... ++..+..+. ...+......+...+..+....+ ..+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 44444 445588999999999999999776212222 244455555 44555554555556666655432 111
Q ss_pred hhchHHHHHHh-----h---cC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHH
Q 014864 241 VSPALPALAHL-----I---HS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV 309 (417)
Q Consensus 241 ~~~~l~~L~~l-----l---~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L 309 (417)
+.+..++.. . .. ...+.......++..+|...++.. ..+++.+..++ .+.++.++..++.+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 223322222 0 11 123444555667888887766522 23577788888 788888999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHhccCCH
Q 014864 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEF 384 (417)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~ 384 (417)
..++...--... .....+.+-+..+..+.+.+..|..+..+..+ +.+.... ....++..+.++..+.+.
T Consensus 147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhcccccc
Confidence 999933221111 22344455555554677777666666655543 2222222 344677778877776654
No 206
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.63 E-value=0.12 Score=34.92 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 014864 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370 (417)
Q Consensus 302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 370 (417)
.+.|++++|++++.+. -...+.+.++++.++++..+.+...+|-.|.++|+-++.. .+-.+.+-+.|
T Consensus 4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 5689999999987544 4444556799999999998776789999999999999764 44444444443
No 207
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.63 E-value=2.3 Score=40.99 Aligned_cols=255 Identities=15% Similarity=0.127 Sum_probs=138.6
Q ss_pred hhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCH---HHHHHHHHHHHHHhCCCchhHHHH
Q 014864 80 AGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP---QLQFEAAWALTNIASGTSEHTKVV 155 (417)
Q Consensus 80 ~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~---~~~~~a~~~L~~l~~~~~~~~~~i 155 (417)
.++.. ...+.+..++..+..++........ ... ..+...+.....+ ..+.+|+.+|+ .+..+. ..
T Consensus 35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT---~~Grdi--~~ 103 (464)
T PF11864_consen 35 DLIDPNQPSEARRAALELLIACIKRQDSSSG--LMR----AEFFRDISDPSNDDDFDLRLEALIALT---DNGRDI--DF 103 (464)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHccccccH--HHH----HHHHHHHhcCCCchhHHHHHHHHHHHH---cCCcCc--hh
Confidence 34444 3456788888888888765422111 111 1122233332223 45555555554 443333 22
Q ss_pred HhCCChhHHHHhhCC---------------------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHH
Q 014864 156 IDHGAVPIFVKLLYS---------------------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA 208 (417)
Q Consensus 156 ~~~g~i~~L~~ll~~---------------------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 208 (417)
.+.++.+.|...+.. .+.......+..+.|+...+...-+.-.-.+.+..++.
T Consensus 104 ~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~ 183 (464)
T PF11864_consen 104 FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICT 183 (464)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 455677777766631 12233445555666666443322222222335566666
Q ss_pred HhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (417)
Q Consensus 209 ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 288 (417)
+..+..++.....++.++-.+.... ..+......++..|....... +....+-.++.||+....... .+.
T Consensus 184 iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~-------~i~ 253 (464)
T PF11864_consen 184 ICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHS-------AIR 253 (464)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHH-------HHH
Confidence 6555556666677777777666653 222334445555555553333 555666778888876553321 356
Q ss_pred HHHhhcCCC------ChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 289 RLAEFLMHP------SPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 289 ~L~~~l~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
.|..+|.++ +..+..-|+..++.+..+.......-+.. -+++.+...++.+ ++.+-.+....+.++.
T Consensus 254 ~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 254 TLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 677777322 34566789999999887773222211211 2677788888877 6767767777776666
No 208
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.61 E-value=0.37 Score=48.85 Aligned_cols=187 Identities=14% Similarity=0.059 Sum_probs=130.3
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhh
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 241 (417)
+.+..-+.+++..-+..|+..+.-+..... .....-..|.+..++.....+.+..+...++.+|..++..-........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 334444455777778888888888776554 1112223344556666666777889999999999999987655555566
Q ss_pred hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChH-HH
Q 014864 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QT 320 (417)
Q Consensus 242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~ 320 (417)
...+|.++..+......++..+..++-..+..... ....+.+...+.+.++.++..+...+.......+. ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 78889999888877777766665555444432111 12567888999999999999988888887765552 11
Q ss_pred HHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 321 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
..-.-.+++|.++....+. +..||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 1122346788899999888 99999999999888865
No 209
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=2 Score=40.26 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=130.3
Q ss_pred hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC-
Q 014864 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG- 159 (417)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g- 159 (417)
...+++...+..|++.|.+.+++- +...... ..-.+..++.-|-++.+.+++.++..+|..+... .... -+..+
T Consensus 266 ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-~~~~--~l~~~~ 340 (533)
T KOG2032|consen 266 KATDPSAKSRGMACRGLGNTASGA-PDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-ASND--DLESYL 340 (533)
T ss_pred hccCchhHHHHHHHHHHHHHhccC-cHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hhhc--chhhhc
Confidence 344567788999999999998873 2222111 2223555665555555589999999999988763 1111 11112
Q ss_pred --ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHh--cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 160 --AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 160 --~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
+.-.+..+..+.+++++..+..+++.++.- +..+++.+.+ .+...+++-.+ +++++.+.. ||......|. |
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~d~~p~va~-ACr~~~~~c~--p 416 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-QDPNPYVAR-ACRSELRTCY--P 416 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-CCCChHHHH-HHHHHHHhcC--c
Confidence 334455677888999999999988888721 1123444332 12233344444 455554443 3333333332 2
Q ss_pred CCChhhhhchHHHHHHhhcCCCh-HHH-HHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 235 QPPFDQVSPALPALAHLIHSNDD-EVL-TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~-~v~-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
+-......+.++- .+ ..+. ..+ -+.-|++ .+....++....... ...-++++.-+.++..+...-++.
T Consensus 417 ~l~rke~~~~~q~---~l-d~~~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~ 486 (533)
T KOG2032|consen 417 NLVRKELYHLFQE---SL-DTDMARFQAFYNQWCI-QLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRS 486 (533)
T ss_pred hhHHHHHHHHHhh---hh-HHhHHHHHHHHHHHHH-HHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHH
Confidence 2111222222221 11 1111 000 1112221 122222222222111 122233444456777777766666
Q ss_pred hcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 313 VTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 313 ~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
.-........... ..+...+-.+.+++ .++++..|..++..+.
T Consensus 487 vd~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 487 VDSLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS 530 (533)
T ss_pred HHHhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence 6444333332222 22334455555666 8999999988887664
No 210
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.58 E-value=0.45 Score=46.37 Aligned_cols=189 Identities=11% Similarity=0.060 Sum_probs=127.9
Q ss_pred HhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (417)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 277 (417)
.+.++++.+++++ ...|..++-..+.-+-.+... -........++|.+...+.+.++.+++.++.++..|+..-..+
T Consensus 327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4566899999999 788888887766655555543 2233455788999999999999999999999888876432222
Q ss_pred HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
.+....+..+..+-.+.+..+|....-|||.++....... .+.-..-.+..-+.++ -..-|..+.+++.....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdp-f~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDP-FVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCC-CCCchhhhhHHHhhccc
Confidence 2223345555555556678899999999999987644332 2222333455567777 66778888888876665
Q ss_pred CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
..+. .=+...++|.++-+.-+++..+|-.|-.++..+..
T Consensus 477 ~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccch---hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 3221 11334678888777777888888777777765544
No 211
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.42 E-value=0.69 Score=45.09 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=107.2
Q ss_pred hCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCC
Q 014864 115 SGVVPRFVEFLLR----EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGD 189 (417)
Q Consensus 115 ~g~i~~Lv~lL~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~ 189 (417)
+.+-|...+..++ ++ +.++..|.-+|..+-.-+.+... .-+|.|+..+. +++|.++.+|+-.|+.++..
T Consensus 891 s~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vc 964 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC 964 (1128)
T ss_pred hhhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeecccccee
Confidence 3445666666665 44 89999999999887765444433 46888999887 79999999999999988744
Q ss_pred CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHH
Q 014864 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269 (417)
Q Consensus 190 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 269 (417)
-....+. .-..|.+.+ .+.+..+++.+..++.+|..... ..+.|-++.+..+|.++|..+..-|-..+..
T Consensus 965 fN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098 965 FNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred hhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence 3222222 345677777 78889999999999999987532 3346888999999999998887777677777
Q ss_pred hccCCh
Q 014864 270 LSDGTN 275 (417)
Q Consensus 270 l~~~~~ 275 (417)
++..+.
T Consensus 1035 ~a~KdN 1040 (1128)
T COG5098 1035 IAKKDN 1040 (1128)
T ss_pred HHhccc
Confidence 765544
No 212
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.41 E-value=0.51 Score=44.44 Aligned_cols=234 Identities=16% Similarity=0.104 Sum_probs=133.3
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
-+..|+..+.|+|+..|......+.++... -......+...+...|.+++.......--.+.+.+++.+..|-..-..
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 467888888999999999888888887654 344455566667788888887665456677888889988886421111
Q ss_pred HHHhCCChhHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 154 VVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
.....-....|+.+.+.+. .....+-..++..++..++..... ++..+++.- ...+..-....+.-+..+...
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence 1111011223333444432 223455556666666555544333 344455555 444544444455555555554
Q ss_pred CCCCCh-hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcC-----CCChhhHH
Q 014864 233 KPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLM-----HPSPSVLI 303 (417)
Q Consensus 233 ~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~-----~~~~~v~~ 303 (417)
-+...+ .....+...+..++.+++..|.+.|+....+ +.... ++.. .++|.+...|. |-+..++.
T Consensus 286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 322222 2235667778888899999998888754432 21121 2222 24555555553 33678999
Q ss_pred HHHHHHHHhhcCChHHHH
Q 014864 304 PALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 304 ~a~~~L~~l~~~~~~~~~ 321 (417)
.|..++..+..-++...+
T Consensus 360 ~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhCHHHHH
Confidence 999999888877665433
No 213
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.38 E-value=0.079 Score=51.20 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=105.8
Q ss_pred chHHHHHHhhcC----CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCCh
Q 014864 243 PALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 243 ~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
.+-|.+.....+ +|+.++..|.-+|..+..-+.+... .-+|.++..+. +++|.+|.+|+-.+|.++....
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 345555565554 5889999988888887655443221 25788999987 8899999999999999875544
Q ss_pred HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
...+. .-..|..-|.+. +..||+.+..++.++.-...- --.|-.+.+..+|.++|.++...|-..+..+
T Consensus 967 ~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 33332 234677778888 999999999999998753221 1247788899999999999999998888888
Q ss_pred hCCC
Q 014864 398 TSGG 401 (417)
Q Consensus 398 ~~~~ 401 (417)
+...
T Consensus 1036 a~Kd 1039 (1128)
T COG5098 1036 AKKD 1039 (1128)
T ss_pred Hhcc
Confidence 7764
No 214
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.30 E-value=2.4 Score=40.03 Aligned_cols=236 Identities=13% Similarity=0.066 Sum_probs=141.0
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
.++...+..|+.++.++|+.-|+....+|.++-+.-...|..+... +...+.+.+.......-...++..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 4444677889999999999999999999999887666666665443 566777777666677778888888998888754
Q ss_pred CCChhh-hhchHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 235 QPPFDQ-VSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 235 ~~~~~~-~~~~l~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.+.... ..-....++.+...+. .........++......++..... ++..++..=-..+..-...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 333332 2334455666666553 333444445555444444332222 233344444445555556666777777
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CCHHHHHHHhcc----C-CH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA---NIIGPLVALLEN----A-EF 384 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~i~~L~~~l~~----~-~~ 384 (417)
...-+...-.-+...+...+...+++. +..|-+.|+....|= .+-.++.. .++|.++..+.. . +.
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~------~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE------YFLSLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH------HHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH------HHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 765443322233345677788888888 888888887654332 12222222 256666666543 2 56
Q ss_pred HHHHHHHHHHHHhhCCCCHH
Q 014864 385 DIKKEAAWAISNATSGGTHE 404 (417)
Q Consensus 385 ~v~~~a~~~L~nl~~~~~~~ 404 (417)
.++..|..++.-+..- +++
T Consensus 356 ~Vr~~a~~vl~~l~~~-d~~ 374 (409)
T PF01603_consen 356 TVRNLAQNVLKILMEM-DPK 374 (409)
T ss_dssp THHHHHHHHHHHHHTT-SHH
T ss_pred HHHHHHHHHHHHHHHh-CHH
Confidence 8999999998888775 444
No 215
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.30 E-value=0.97 Score=44.18 Aligned_cols=256 Identities=13% Similarity=0.132 Sum_probs=158.8
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV 155 (417)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i 155 (417)
.+++.+.-.+.+.+..-..-|.+.+ +..-+.++..-++|.|+..+.-++ ..++..- +.-++..... .+
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l----~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltp-l~k~~k~ld~-~e----- 326 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRL----DNFPEEIIASKVLPILLAALEFGDAASDFLTP-LFKLGKDLDE-EE----- 326 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhccccchhhhhH-HHHhhhhccc-cc-----
Confidence 3444445555555555555555433 222334556667777777766554 1222222 2222332222 22
Q ss_pred HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC
Q 014864 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (417)
Q Consensus 156 ~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~ 235 (417)
...+++|.|++++..+|..+|-..+.-+-+.... ..+.+++..+++.+..-+ .++++.+++..+.++.-|+..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 4557899999999999999987766666555543 334556666888888888 888999999999988888764321
Q ss_pred CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCC-hHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-FPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
. ......+..+.++-.+++..++.+..-|++.++....... ..++ ...+..-+.++-..-|..++..+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 2224456666666555577888888888887765532211 2222 2334444666666677777777766554
Q ss_pred CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
..+.. -+...++|.+..+.-+. +..+|..|..++..+-.
T Consensus 477 ~~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccchh---hhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 44322 34557888888888888 88888888777766544
No 216
>PRK14707 hypothetical protein; Provisional
Probab=95.23 E-value=5.9 Score=44.18 Aligned_cols=285 Identities=17% Similarity=0.114 Sum_probs=145.7
Q ss_pred CHHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
.+..+++.+.. ++...+.. +..|...+..+ +...+.+-..|+...|-.+-+-++++..+..+...-..++. .+..
T Consensus 164 ~~~lllNafSKw~~~~~c~~a-a~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQAV-APRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHHH-HHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 34566665553 45555554 44444444443 34444455555555555555666645555544444444444 3444
Q ss_pred HHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh-hh
Q 014864 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NF 229 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~-~l 229 (417)
+..+-. ..+-..+..|.. ++.....+++.++..=..+.+..++.+-..+ +...++-|.+-++..+-..++..+. .|
T Consensus 241 ~~~~~~-q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 241 RNELKP-QELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HHhCCh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 443333 444445555544 5555555555555443334454555544333 3444555556677666665555554 44
Q ss_pred hcCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHH
Q 014864 230 CRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALR 307 (417)
Q Consensus 230 ~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~ 307 (417)
.. ++....... .++-..|..+-+-+|..+...++.+|..=...+++..+.+-..| +...++-++ =++..+...|..
T Consensus 319 ~~-d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~ 396 (2710)
T PRK14707 319 AD-DPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAAS 396 (2710)
T ss_pred hc-cHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHH
Confidence 44 333222222 23333344444556777777777666654444544444333333 344444444 345555556666
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (417)
Q Consensus 308 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (417)
.|..=..++.+..+. ++...+...++-|..=.+..+...++..|.--...+.+-.+.+
T Consensus 397 ~LA~~l~~d~~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~ 454 (2710)
T PRK14707 397 ALAEHVVDDLELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKAL 454 (2710)
T ss_pred HHHHHhccChhhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhc
Confidence 666655566666553 4444555555555432266667777766666656556554443
No 217
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.19 E-value=2.7 Score=39.13 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHhc---CCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 014864 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (417)
Q Consensus 172 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~---g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 247 (417)
+..+..+|+.+|+.+..+..-. ..+-.. -++...+..+. .+.+..+....+|+|+.=-..............+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6789999999999987654322 111111 12344455552 334667888888888753333221122222333333
Q ss_pred HHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHcC-ChHHHHhhcCCCChhhHHHHHHHHHHhh--cCChHH-HH-
Q 014864 248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFLMHPSPSVLIPALRTVGNIV--TGDDMQ-TQ- 321 (417)
Q Consensus 248 L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~v~~~a~~~L~~l~--~~~~~~-~~- 321 (417)
+..+-+ -+...+..+.+.++.++....+.. +....+ .++.++..+-+....++..|...+..+. .+.... ..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 333332 345678888899999988766543 222222 6788888887777777777655554443 222211 11
Q ss_pred --HHHHc----C-----ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHhccCCHHHHHH
Q 014864 322 --CVIEY----Q-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKE 389 (417)
Q Consensus 322 --~~~~~----~-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 389 (417)
..++. + +.+.|..++.+. +...-.--.|...-..-+++. .....+ ...+...-.+++++++.+|..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence 11121 2 233466677664 333333334444333333221 111111 134555555778899999999
Q ss_pred HHHHHHHhhCC
Q 014864 390 AAWAISNATSG 400 (417)
Q Consensus 390 a~~~L~nl~~~ 400 (417)
|..+-..++..
T Consensus 294 A~~aW~~liy~ 304 (372)
T PF12231_consen 294 AFKAWRRLIYA 304 (372)
T ss_pred HHHHHHHHHHH
Confidence 99988887764
No 218
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.05 E-value=3.1 Score=39.01 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=113.3
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCC--cHHHHHHhCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHhCC
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSP--PIEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIASG 147 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~g~i~~Lv~lL~~~~----~~--~~~~~a~~~L~~l~~~ 147 (417)
..+..+++..+.+.++.|+-...++....+-. +.+.+.+.-+.+.+-.++.+.+ .| -.+..++.+|..+|+.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 44566666777788999999999988764222 2334667777888888887643 12 3445566777777775
Q ss_pred Cchh--HHHHHhCCChhHHHHhhCC-CC------HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhH
Q 014864 148 TSEH--TKVVIDHGAVPIFVKLLYS-PS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218 (417)
Q Consensus 148 ~~~~--~~~i~~~g~i~~L~~ll~~-~~------~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 218 (417)
++. ...++ +.||.|..++.. .+ -.+.+.+-.+|..+++..+ ....++..|+++.+.+...-..-..-
T Consensus 94 -pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 94 -PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred -hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCchh
Confidence 432 23344 478999998864 22 2378889999999998866 45667889999999987732221111
Q ss_pred HHHHHHHHhhhhcC-C-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864 219 LRNATWTLSNFCRG-K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (417)
Q Consensus 219 ~~~a~~~l~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 270 (417)
..-++.++.-+... . -..........+..+..-+...+.......|..|..+
T Consensus 170 ~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 170 MALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 12222222211111 1 0111111222344444444445666677777777743
No 219
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.02 E-value=1.4 Score=40.85 Aligned_cols=197 Identities=17% Similarity=0.225 Sum_probs=118.8
Q ss_pred HHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh
Q 014864 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257 (417)
Q Consensus 178 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 257 (417)
.|+.+|-.+....+..-..+.+.+++..+++.+...-+..... .-...-....+....... +. ...+...-.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~---~~~~~~~~~~~~~~~~~~---~~--~~~i~~~r~ 74 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE---NKNEEAGSGIPPEYKESS---VD--GYSISYQRQ 74 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---ccccCCCCCCCCCccccc---cc--ccccCHHHH
Confidence 4566666666666556677788999999999983211111000 000000111111000000 00 000000011
Q ss_pred HHHHHHHHHHHHhcc---CChHHHHHHHH-cCChHHHHhhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 014864 258 EVLTDACWALSYLSD---GTNDKIQAVIE-AGVFPRLAEFLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330 (417)
Q Consensus 258 ~v~~~a~~~l~~l~~---~~~~~~~~~~~-~~~~~~L~~~l~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 330 (417)
.+....+..+..+.. +.....+.+++ ..+...|..++.+.. +.+-..|+..+..+....+.....+.+.|+.+
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 223344444444444 33444555666 556777778887764 68889999999999999998888888999999
Q ss_pred HHHHhhc-CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864 331 CLLNLLS-GN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE 383 (417)
Q Consensus 331 ~L~~ll~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~ 383 (417)
.+++.+. .. .+.++-...-.+++.||-+ ..-.+.+.+.+.++.+++++.+++
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999988 33 1445555566677777764 567788888899999999887653
No 220
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.01 E-value=1.2 Score=44.88 Aligned_cols=197 Identities=17% Similarity=0.112 Sum_probs=110.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPR 192 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~~~~~ 192 (417)
.+..+.+++.+.. ---.+|++.|..+......-.. ..+..+..++.+ .++.++..|+-+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4566677777654 1123344445554443212222 234555566654 5677888888888888632111
Q ss_pred ---------HHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC---Ch
Q 014864 193 ---------CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD 257 (417)
Q Consensus 193 ---------~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---~~ 257 (417)
..........++.+...+. ...+..-+..++.+|+|+... ..++.+...+... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 1111223335666766664 345667888899999999752 5678888888766 67
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 014864 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL 335 (417)
Q Consensus 258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 335 (417)
.++..|++++..++...++.+ .+.+++++.+. +.++|..|+..|-. ..+... .+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~~-------~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSPS-------VLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---HH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCHH-------HHHHHHHH
Confidence 899999999998877666543 35677776654 46788888766644 222221 24556777
Q ss_pred hcCCCchhHHHHH
Q 014864 336 LSGNYKKSIKKEA 348 (417)
Q Consensus 336 l~~~~~~~v~~~a 348 (417)
+..+.+..|....
T Consensus 601 l~~E~~~QV~sfv 613 (618)
T PF01347_consen 601 LWNEPSNQVASFV 613 (618)
T ss_dssp HTT-S-HHHHHHH
T ss_pred HhhCchHHHHHHH
Confidence 7665455555443
No 221
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.98 E-value=2.1 Score=36.86 Aligned_cols=202 Identities=21% Similarity=0.173 Sum_probs=119.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 197 (417)
++.|+.-+....++..+...+.+|..++.+...... -++..|..+...+.......+...+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455555444444489999999999999996411111 234556666676777777777788888776554221
Q ss_pred HhcCCHHHHHHHh---------cCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-cCCChHHHHHHHHHH
Q 014864 198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL 267 (417)
Q Consensus 198 ~~~g~i~~L~~ll---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l 267 (417)
+.+..++... ..+...+.......++..+|...|. .....++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3344444441 1122345556667889999988766 4456778888888 777888999999999
Q ss_pred HHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhhcCC
Q 014864 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGN 339 (417)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~ 339 (417)
..++...- +. +. .....+.+-++.+ .+.+....+..++.+..+.-+. ........++..+-++..+.
T Consensus 147 ~~Lc~~~v--vd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEV--VD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhh--cc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 99984322 11 11 1234444444433 3555554444444443332211 11234445666666666655
No 222
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.96 E-value=0.85 Score=37.32 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=80.1
Q ss_pred hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC-------------------CHHHHHHHhcCCCchhHHHH
Q 014864 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-------------------GLVPLLAQLNGQPKLSMLRN 221 (417)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g-------------------~i~~L~~ll~~~~~~~~~~~ 221 (417)
.+.+.-++.++++++|..|+.++..+-.+...+-...-+.. .-..|+..+..+.+..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34445566789999999999999998866543322221111 23345566656678889999
Q ss_pred HHHHHhhhhcCCCCC--ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864 222 ATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 222 a~~~l~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 273 (417)
++.++..|....|.. +......++..+..++.+.|++++..++.+++-+...
T Consensus 122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999999999876543 3344566777777888889999999998888877643
No 223
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.89 E-value=0.2 Score=48.69 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (417)
Q Consensus 217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (417)
.+.+.++.++..+-..++. ...+.+.+..+++...+++..|+..+|..|..+.....+ +...+-.++...+..-+.+
T Consensus 61 RIl~fla~fv~sl~q~d~e--~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKE--EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHhhhccCch--hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhc
Confidence 3444455555555443322 235678888888888999999999999999998863322 2222333467778888888
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 297 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
..+.||..|+.+|+.+-..+.+. +..++..+..+++..++++||+.|...+.
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 89999999999999987322211 12456677888887768899998765544
No 224
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.83 E-value=0.85 Score=42.34 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=97.7
Q ss_pred HHHHHH-hCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC-C---CCHHHHHHHHH
Q 014864 109 IEEVIR-SGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-S---PSDDVREQAVW 181 (417)
Q Consensus 109 ~~~~~~-~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~---~~~~i~~~a~~ 181 (417)
..-+++ ..+...|...+++.. -+.+-..|+.++..+....|.....+.+.|.++.+++.+. . ++.++....-.
T Consensus 98 lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~ 177 (379)
T PF06025_consen 98 LRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPN 177 (379)
T ss_pred cccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHH
Confidence 444556 556777777887754 3688899999999999999999999999999999999887 4 67888888888
Q ss_pred HHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCch------hHHHHHHHHHhhhhcCCCCCChhhhh
Q 014864 182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL------SMLRNATWTLSNFCRGKPQPPFDQVS 242 (417)
Q Consensus 182 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~ 242 (417)
+|+.||-+.. ..+.+.+.+.++.+++++.+.... +........+-.|.++.|.-....+.
T Consensus 178 ~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 178 VLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999998776 557778889999999998432211 33444455555666665544433333
No 225
>PRK14707 hypothetical protein; Provisional
Probab=94.77 E-value=8.8 Score=42.97 Aligned_cols=283 Identities=15% Similarity=0.085 Sum_probs=144.3
Q ss_pred CHHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
++..+++.+.. +++..+. |+..|...+..+ ......+-..|+-..|-.+-+-++.+.....+.++-..++. .+..
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~-aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l 282 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGN-AVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGL 282 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHH-HHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHH
Confidence 45566666654 4444444 455555444443 34444455555555555555666633444444444445554 3555
Q ss_pred HHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh-hh
Q 014864 152 TKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NF 229 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~-~l 229 (417)
++.+-..+ +...+.-|+ -++..+...+...|..=..+++..++.+-.. .+...++-|.+-++..+-+.++.+|. .+
T Consensus 283 ~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 283 RKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred HHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 44444333 333334343 4777777767666666555666655543333 34555666656666555555555554 44
Q ss_pred hcCCCCCChhhh-hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864 230 CRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (417)
Q Consensus 230 ~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~ 308 (417)
+.+. ....... .++-..|..+-+-++..+...++..|..=..++.+..+.+-..|+-..|-.+-+=++..+...+...
T Consensus 361 ~~d~-~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~ 439 (2710)
T PRK14707 361 VADP-ELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSA 439 (2710)
T ss_pred ccCH-hhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHH
Confidence 4443 2222222 3333344444455777777777777766555555555545445555544444444565666666666
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHH
Q 014864 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQ 364 (417)
Q Consensus 309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (417)
|.--...+.+..+. ++..-+...++.++ =+ +..+..+|+..|..=....++..+
T Consensus 440 lA~~la~d~~l~~~-~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~ 494 (2710)
T PRK14707 440 LAGRLAHDTELCKA-LDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRK 494 (2710)
T ss_pred HHHHHhccHHHHhh-cChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHh
Confidence 66555555544432 22222333333333 33 555555555555444444444433
No 226
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.70 E-value=5.8 Score=40.56 Aligned_cols=219 Identities=18% Similarity=0.203 Sum_probs=130.0
Q ss_pred HHhCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC----CCC----HHHHHHHH
Q 014864 113 IRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY----SPS----DDVREQAV 180 (417)
Q Consensus 113 ~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~----~~~----~~i~~~a~ 180 (417)
.+.|++..++.++.+-. ........+..|...+.. +.+++.+++.|+++.|+..+. ... ..+.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 35678888888887632 134555566666666664 899999999999999998774 333 67888888
Q ss_pred HHHHHhhCCCchHHH----HHHhcC--------CHHHHHHHhcCC---CchhHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 014864 181 WALGNIAGDSPRCRD----LVLSQG--------GLVPLLAQLNGQ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (417)
Q Consensus 181 ~~L~nl~~~~~~~~~----~~~~~g--------~i~~L~~ll~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 245 (417)
.++-.+..+...... ...... .+..+++.+... .++.+....+.+|-+|+.+.+......+..+-
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 777777643221000 001111 266667766432 36889999999999999986433333322222
Q ss_pred HHHHHhhc-----CCChHHHHHHHHHHHHhccC----C--hHHHHHHHHcCChHHHHhhcCCCCh---------------
Q 014864 246 PALAHLIH-----SNDDEVLTDACWALSYLSDG----T--NDKIQAVIEAGVFPRLAEFLMHPSP--------------- 299 (417)
Q Consensus 246 ~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~----~--~~~~~~~~~~~~~~~L~~~l~~~~~--------------- 299 (417)
|.+ ++=. .++..+ .+.+++.++.+ . ....+.+++.|++...+.+|...-|
T Consensus 273 p~l-~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 273 PYL-DFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred Hhc-ChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 222 2111 112222 24444544432 2 2345678889999988888753322
Q ss_pred -hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc
Q 014864 300 -SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (417)
Q Consensus 300 -~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 337 (417)
.-...+++.|.-++.++.. ++..+..++++.+..+=+
T Consensus 349 ~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEq 386 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQ 386 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhc
Confidence 1234567777777777653 344566677755544433
No 227
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.67 E-value=0.94 Score=44.42 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=94.0
Q ss_pred hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHHHHhhcCC
Q 014864 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~ 316 (417)
......++|.|...+++.+..+++.++..+..+++.-+. ..++.-++|.+..+. .+.+..++..++-|++.+...-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 345578889888888989999999999999988766552 244555888887774 3557889999999999998322
Q ss_pred hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE 383 (417)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~ 383 (417)
+.. .++ ..+.++....+.. ++.+......+..++....+.. ..++...++|.++.+...+.
T Consensus 461 D~~--~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKA--AVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHH--HhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 211 111 2344555556666 8888887777777776532221 34455678888888776554
No 228
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.62 E-value=0.72 Score=43.69 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=113.8
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhCCCch
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~~L~~l~~~~~~ 150 (417)
....+.+.+.+++...+..|++.+..+ +.+ .....+++....+..|.+++.++. ..++....+.++..+-.+.--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 457888899999999999999998877 332 566788999999999999999876 235556666666665554221
Q ss_pred hHHHHHhCCChhHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 151 HTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
....+...+|.....+.+ ..+..+-..|+..|-++...++..+..+.+.--+..|+..+ +..+..++..|...+..
T Consensus 162 -sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 162 -SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred -eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 111122233333344443 24566778889999999888887888888888899999999 77788888888888887
Q ss_pred hhcCCCCC
Q 014864 229 FCRGKPQP 236 (417)
Q Consensus 229 l~~~~~~~ 236 (417)
+....|..
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 77765443
No 229
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.58 E-value=3.9 Score=38.05 Aligned_cols=309 Identities=14% Similarity=0.133 Sum_probs=158.9
Q ss_pred cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
.+.+...+..|-..|.+.+....+.+....+... ++.++++++. +.+..+-.+|+++|+.+..+ ++..
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k-~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDK-MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence 3455666777766676666554322222222111 4555554431 11367889999999999875 5444
Q ss_pred HHHHhCC---ChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---C-CCchhHHHHHH
Q 014864 153 KVVIDHG---AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT 223 (417)
Q Consensus 153 ~~i~~~g---~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~-~~~~~~~~~a~ 223 (417)
..+-+.. .+...+..+.+ .+..+....+|+|..=-.. ..++....+..++..+. + -++..+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 4433322 34455555543 4556777777777653211 12333334444444442 2 34667888888
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc--CChHHH----HHHHHc----C-----ChH
Q 014864 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GTNDKI----QAVIEA----G-----VFP 288 (417)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~--~~~~~~----~~~~~~----~-----~~~ 288 (417)
.++.+|....|..-......-+|.++..+-+....++..|..++..+.. +++... ....+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888876554444445567777777766777777665554444321 211111 111111 1 333
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHHHHH
Q 014864 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQA 365 (417)
Q Consensus 289 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~ 365 (417)
.|..++.+.+......-+|..--+.-+......--.-...+...-..++++ ++.+|..|..+=..+.. .++.....
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k 314 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK 314 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 456666664433333333333222223221111111123455555567777 88898887755444432 22222222
Q ss_pred HHHCCCHHHHHHHhccC-CH----HHHHHHHHHHHHhhCC
Q 014864 366 VIEANIIGPLVALLENA-EF----DIKKEAAWAISNATSG 400 (417)
Q Consensus 366 l~~~~~i~~L~~~l~~~-~~----~v~~~a~~~L~nl~~~ 400 (417)
.+.- +..++...++.. .. +++..+...++|+...
T Consensus 315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 2221 223334444432 33 6788888888887654
No 230
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.55 E-value=0.19 Score=41.50 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchHHHHHH---------------hcCCHHHHHHHhcC-----CCchhHHHHHHHHHhh
Q 014864 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVL---------------SQGGLVPLLAQLNG-----QPKLSMLRNATWTLSN 228 (417)
Q Consensus 169 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~L~~ll~~-----~~~~~~~~~a~~~l~~ 228 (417)
.++.......++.+|+|++.....++..+- +...+..|+..+.+ .....-....+.++.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 345556778888999999887765553322 22246777777755 2345667889999999
Q ss_pred hhcCCCCCChhhh--hc--hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864 229 FCRGKPQPPFDQV--SP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (417)
Q Consensus 229 l~~~~~~~~~~~~--~~--~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 277 (417)
+++.+....+... .. .+..|+.++.+.+..-+.-++.+|.|+|-..+..
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 9988644333322 22 3677888888886666777899999999766543
No 231
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.51 E-value=2.4 Score=42.19 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=80.5
Q ss_pred chHHHHHHhhcCC----ChHHHHHHHHHHHHhcc----CChHHHHHHHHcCChHHHHhhcC----CCChhhHHHHHHHHH
Q 014864 243 PALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVG 310 (417)
Q Consensus 243 ~~l~~L~~ll~~~----~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~~~~L~~~l~----~~~~~v~~~a~~~L~ 310 (417)
..+..+..++.++ .+.+...++-+++.+.. ..+.....++ ..+++.+...|. ..+...+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3455666666543 45566666666666542 2211001111 124455555443 445566788999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhc-C-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHH
Q 014864 311 NIVTGDDMQTQCVIEYQALPCLLNLLS-G-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDI 386 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~-~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v 386 (417)
|+..... ++.+..++. + ..+..+|..|+|+|.+++...+.. +-+.|+.++.+ .++++
T Consensus 472 N~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 9874332 333444443 1 125689999999999998755553 33455566543 47899
Q ss_pred HHHHHHHHHHh
Q 014864 387 KKEAAWAISNA 397 (417)
Q Consensus 387 ~~~a~~~L~nl 397 (417)
|..|+.+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 99999888655
No 232
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.49 E-value=1.4 Score=41.88 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=112.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCCh----hhHHHHHHHHHHhhcCChHHH
Q 014864 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVTGDDMQT 320 (417)
Q Consensus 245 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~----~v~~~a~~~L~~l~~~~~~~~ 320 (417)
...+...+.+++..-+..++..+..++... .....++....+..|..++.++.. .+....++++..+....-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 445667777777777777888888887544 456778888889999999987753 455556666655543222111
Q ss_pred HHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 321 ~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
. .+...++.....+.+-. .+..+-..|...|-++..+++...+.+.+.--+..|+..+...+..++..|...+..+..
T Consensus 164 ~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 E-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred e-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1 11112222333333221 155677888888989988888777777787889999999999999999999999988988
Q ss_pred CCCHHHHHHHHh
Q 014864 400 GGTHEQIKYEHT 411 (417)
Q Consensus 400 ~~~~~~~~~l~~ 411 (417)
.+..+....+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 887666555543
No 233
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=2.3 Score=41.41 Aligned_cols=295 Identities=14% Similarity=0.156 Sum_probs=157.0
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
++..+=+.+.+++...+.-|+-.+.-.-++-.++. .-++-.|...+.+++ ..++..|+.-|+-.-.++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 56666667777776666655544332222211111 012455667777777 678888877777655543 222
Q ss_pred HHHhCCChhHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 154 VVIDHGAVPIFVKLLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~--~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
.+. ..|..++.+.+ .++...|..+|+.+..++.. ..+ ..-++..++..-.........+...-.|.-+..
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 222 14556666543 45777777888887754431 111 111333333332112233444444445554444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC---hhhHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT 308 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~---~~v~~~a~~~ 308 (417)
+... .+...+.-+..-+..+...+-..+..++.....+.-.+-+ ..+..+-...+ ..-+..|+-.
T Consensus 559 gkqe--------~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQE--------SVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred cccc--------hHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 4321 1112222222222222222222222221111111100000 22222222221 2233467777
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHH
Q 014864 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388 (417)
Q Consensus 309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 388 (417)
++-++.+.+-..++. +..+-.++..+ .+.+|+..-.+++-++..+|.. +++..|-++.++.|.++..
T Consensus 627 iAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 777777777554433 55677778888 9999999999999999887752 5788888899999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHH
Q 014864 389 EAAWAISNATSGGTHEQIKYEH 410 (417)
Q Consensus 389 ~a~~~L~nl~~~~~~~~~~~l~ 410 (417)
+|+.+++-+-.+.+.-.+..++
T Consensus 694 naIfamGLiGAGTnNARla~mL 715 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNARLAQML 715 (878)
T ss_pred HHHHHhccccCCcchHHHHHHH
Confidence 9999999887765544444443
No 234
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.40 E-value=0.2 Score=35.87 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=64.1
Q ss_pred hHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (417)
Q Consensus 287 ~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (417)
+...+..+.++.+.+|..++..|..+..... ....-..+++..+...++++ ++.|--+|..+|+.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~----- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD----- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence 4556777888889999999999999998776 11122346788889999999 999999999999999986665
Q ss_pred HHCCCHHHHHHHhcc
Q 014864 367 IEANIIGPLVALLEN 381 (417)
Q Consensus 367 ~~~~~i~~L~~~l~~ 381 (417)
.+++.|++...+
T Consensus 77 ---~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 ---EVLPILLDEYAD 88 (92)
T ss_pred ---HHHHHHHHHHhC
Confidence 245555555443
No 235
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.81 Score=40.16 Aligned_cols=147 Identities=17% Similarity=0.133 Sum_probs=97.8
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
..+.+.+..|.++|+.....++..++.+...+ .+....+... ++..+++-+++.. ..+-..|+.++..+.+.-....
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~-vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHE-VIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHH-HHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999986654 3333333322 4666777778887 7899999999998887422222
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
....+ +.+..|+.--..++.-+++.|-.+|..+....... -+++.|...+ ++.++.++..++.++.+...
T Consensus 165 ~~~ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 165 DQELD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPIL-QHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHH-hhhchhhhhhhhccccccce
Confidence 22111 22222222222356778999999998887654422 1455666666 77788888888877666554
No 236
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.30 E-value=0.28 Score=40.61 Aligned_cols=82 Identities=11% Similarity=0.210 Sum_probs=63.9
Q ss_pred CchhHHHHHhCCChhHHHHhhCC---------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhH
Q 014864 148 TSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218 (417)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~ll~~---------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 218 (417)
+..+.+.+++.|++..|+.+|.. .+..+...++.+|..|.....+....+...+++..++..+ .+++..+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~ 174 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT 174 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence 35677888888999999988843 4567888999999999877776555555677888888888 7888999
Q ss_pred HHHHHHHHhhhh
Q 014864 219 LRNATWTLSNFC 230 (417)
Q Consensus 219 ~~~a~~~l~~l~ 230 (417)
+..++..|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 237
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.19 E-value=3.3 Score=36.34 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=122.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLV 197 (417)
Q Consensus 120 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~ 197 (417)
.|=..|.+++ +.+|..|+.+|..+...-+... ....-+..|+.++.+ .|......++.++..+.....-....
T Consensus 3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 3445677877 8999999999998887544321 222234555554433 45555555577777776332211111
Q ss_pred HhcCCHHHHHHHhc-CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCh
Q 014864 198 LSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 198 ~~~g~i~~L~~ll~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~ 275 (417)
....+..+.+... +......+..+...+..+...........-...+..+++.+..+ ||.-.-.+...+..+...-+
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1112223332221 11234566777777777776542222222345677777777654 77766666666655543322
Q ss_pred HHHHHHHHcCChHHHHhhcC--------C-C-Ch-h-hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchh
Q 014864 276 DKIQAVIEAGVFPRLAEFLM--------H-P-SP-S-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~--------~-~-~~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 343 (417)
- ....+.+.+.+. . + ++ . .+..--..|.+....++... .-.+|.|++-|.++ .+.
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~ 223 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPS 223 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcH
Confidence 1 122333333332 1 1 22 1 23344445555555555333 34689999999999 899
Q ss_pred HHHHHHHHHHHHhc
Q 014864 344 IKKEACWTVSNITA 357 (417)
Q Consensus 344 v~~~a~~~L~nl~~ 357 (417)
+|..+..+|..++.
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999886
No 238
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.03 E-value=0.69 Score=38.28 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=80.9
Q ss_pred CCChHHHHHHHHHHHHhccCChHHHHHHHH----------------cCChHHHHhhcCC------CChhhHHHHHHHHHH
Q 014864 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVFPRLAEFLMH------PSPSVLIPALRTVGN 311 (417)
Q Consensus 254 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~L~~~l~~------~~~~v~~~a~~~L~~ 311 (417)
.++......+|..|+|++..+..... +++ ...+..|+..+.. +...-......+++|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 34445566778888888876554322 222 1246667777655 223445677888889
Q ss_pred hhcCChHHHHHHHHc--CC--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHhcc
Q 014864 312 IVTGDDMQTQCVIEY--QA--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN 381 (417)
Q Consensus 312 l~~~~~~~~~~~~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l~~ 381 (417)
++.... .++.+++. +. +..|+.++.+. +..-|.-++.+|.|+|.....+ ..+.. .+++|.|+--|..
T Consensus 85 lS~~~~-gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 85 LSQLPE-GRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred hcCCHH-HHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence 886554 44545543 33 77888888888 7777888999999999875555 34443 4778877776653
No 239
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.00 E-value=1.6 Score=41.78 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=78.7
Q ss_pred hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
...+.+.+..+++.+.+.|..|+..+|..|+.++..-.+ +...+-.|.+..|..-+-+..+.+|..|+.+|..+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 455688888999999999999999999999988765433 3344555678888888888889999999999988863332
Q ss_pred HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (417)
Q Consensus 318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 351 (417)
.... .....+..+++..++.+||+.|..-
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1111 1234566777766578888877543
No 240
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.99 E-value=0.54 Score=46.01 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=95.9
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 238 (417)
.++|.|..-+++.+..+++.++..+..++..-+ -..+..-+++.+-.+...+++..++.+++-|+..+.. ..+.
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD~ 462 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLDK 462 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHHH
Confidence 567777778888899999999999999885433 1234444678888887788899999999999999983 2233
Q ss_pred hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC
Q 014864 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298 (417)
Q Consensus 239 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 298 (417)
..+...++.+.+.....|+.+....+.+...+.....+. ..+....++|.++.+...+.
T Consensus 463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 334455666667777889998887777777766444332 34555668898888877665
No 241
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.95 E-value=1.5 Score=44.13 Aligned_cols=309 Identities=16% Similarity=0.117 Sum_probs=157.6
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH------HHhC
Q 014864 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV------VIDH 158 (417)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~------i~~~ 158 (417)
+|.-+...+++.++.++.. ......+++.|++..|+..=.- ...-.-...||..+.+... ..+. ++-.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~~q~-~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGSLQG-IMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhhhhh-HHHHHhhccHHHHH
Confidence 4555666777778777654 5666778888888877665322 2334445566776665321 1111 1122
Q ss_pred CChhHHHHhhCCCC------HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC-------CC-----------
Q 014864 159 GAVPIFVKLLYSPS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------QP----------- 214 (417)
Q Consensus 159 g~i~~L~~ll~~~~------~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-------~~----------- 214 (417)
.++..-+.+|.... ..+.-.+++.+..+ -+.+-.+..+..|+.++.. +.
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frai-------l~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~s 511 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVFRAI-------LDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISS 511 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhh
Confidence 34444555665322 22233333333222 2333345566666666621 11
Q ss_pred chhHHHHHHHHHhhhhcCCC-----C-CChhhhhchHHHHHHhhcCCC------hHHHHHHHHHHHHhccCC-------h
Q 014864 215 KLSMLRNATWTLSNFCRGKP-----Q-PPFDQVSPALPALAHLIHSND------DEVLTDACWALSYLSDGT-------N 275 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~-----~-~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~l~~l~~~~-------~ 275 (417)
+.......|.+|....+..- . .+.....+..+..++-+...+ .+..+..+|-+-.+.... -
T Consensus 512 s~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w 591 (1516)
T KOG1832|consen 512 SKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQW 591 (1516)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcc
Confidence 12334455666655444321 1 011111222333333222111 223344444444332221 1
Q ss_pred HHHHHHHHcCChHHHHhhcCCC-C-------hhhHHHHHHHHHHhhcCChHHHHHHHH-------cCChHHHHHhhcCC-
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHP-S-------PSVLIPALRTVGNIVTGDDMQTQCVIE-------YQALPCLLNLLSGN- 339 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~-~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~~l~~L~~ll~~~- 339 (417)
...+.+.+.+.+..++.+..-+ + .+....|+.+|..+..-.+-+.+..-. ..++..++..-.-.
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 2344566667777777776532 2 244556666666665555544432211 11222222222111
Q ss_pred --CchhHHHHHHHHHHHHhcCCHHH-------------------------------HHHH----HHCCCHHHHHHHhccC
Q 014864 340 --YKKSIKKEACWTVSNITAGNREQ-------------------------------IQAV----IEANIIGPLVALLENA 382 (417)
Q Consensus 340 --~~~~v~~~a~~~L~nl~~~~~~~-------------------------------~~~l----~~~~~i~~L~~~l~~~ 382 (417)
.++++++.|..++.|+....|+. ...+ ...+.|..|+.+|+..
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k 751 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYK 751 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Confidence 17899999999999987543211 1122 2367899999999865
Q ss_pred C-----HHHHHHHHHHHHHhhCCCCHHHH
Q 014864 383 E-----FDIKKEAAWAISNATSGGTHEQI 406 (417)
Q Consensus 383 ~-----~~v~~~a~~~L~nl~~~~~~~~~ 406 (417)
. ..+|.-||.+|..|+......|+
T Consensus 752 ~P~t~aD~IRalAc~~L~GLaR~~tVrQI 780 (1516)
T KOG1832|consen 752 NPPTTADCIRALACRVLLGLARDDTVRQI 780 (1516)
T ss_pred CCCCcHHHHHHHHHHHHhccccCcHHHHH
Confidence 4 36899999999999987554443
No 242
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.87 E-value=0.53 Score=38.04 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=80.7
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHH
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQ 362 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~ 362 (417)
...++..+|+++++.-+-.++..+.-.+..++...-.---...+..++.+|+.+..+.+++.++.++..+.. +.++-
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 567789999999988899999999888877642221111235678899999887677889999999999975 55554
Q ss_pred HHHHHH---CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 363 IQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 363 ~~~l~~---~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
.+.+.. .++++.++.++++ ......++.+|..+...
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 444443 2345566666554 56778888888887764
No 243
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.69 E-value=2.5 Score=35.03 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=92.0
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
-++.+++...+++..++..|+..+.-++...=-.|.. .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 4678888888999999999999999887654222222 4999999999988 99999999999999886554443
Q ss_pred HHHhCCChhHHHHhh---CCC-CHHH---HHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC-------chhHH
Q 014864 154 VVIDHGAVPIFVKLL---YSP-SDDV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-------KLSML 219 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll---~~~-~~~i---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~ 219 (417)
.-...| +..-..+- ..+ .... ....+..+..+...+...|..+ +..+++.+..+. .+.-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 333323 32222222 111 1111 4445555666666555566654 556666663322 33445
Q ss_pred HHHHHHHhhhhcC
Q 014864 220 RNATWTLSNFCRG 232 (417)
Q Consensus 220 ~~a~~~l~~l~~~ 232 (417)
....++..||+.-
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 5566666666654
No 244
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=8.4 Score=38.38 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=91.3
Q ss_pred HHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--------CCHHHHHHHHHHHHHhhC---CCchHHHHHHhcCCHH
Q 014864 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG---DSPRCRDLVLSQGGLV 204 (417)
Q Consensus 136 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--------~~~~i~~~a~~~L~nl~~---~~~~~~~~~~~~g~i~ 204 (417)
.|+.++.-+.+..++.+ . .|+++.+...|.. .++.-.+.|++.++++.. .....+ -+++.=+++
T Consensus 389 aal~fl~~~~sKrke~T---f-qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~a-n~me~fiv~ 463 (970)
T COG5656 389 AALFFLIISKSKRKEET---F-QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAA-NVMEYFIVN 463 (970)
T ss_pred HHHHHHHHHhcccchhh---h-hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHH-HHHHHHHHH
Confidence 34555555444323221 1 3888999998842 235556778888888764 222232 233333455
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc
Q 014864 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (417)
Q Consensus 205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (417)
.++..+ +++..-++..+|..++.+..+ -++......+......++.+++-.|+..|+-++.-+..+. .....+.+
T Consensus 464 hv~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sa 538 (970)
T COG5656 464 HVIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSA 538 (970)
T ss_pred HhhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHh
Confidence 555555 677777889999999999554 3333444566677777787788888888888888877554 33444555
Q ss_pred CChHHHHhhcC
Q 014864 285 GVFPRLAEFLM 295 (417)
Q Consensus 285 ~~~~~L~~~l~ 295 (417)
.+.+.+-++|.
T Consensus 539 hVp~tmekLLs 549 (970)
T COG5656 539 HVPETMEKLLS 549 (970)
T ss_pred hhhHHHHHHHH
Confidence 44444444443
No 245
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.54 E-value=0.52 Score=47.36 Aligned_cols=170 Identities=19% Similarity=0.192 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC----CChHHHHHHHHHHHHhcc---CCh
Q 014864 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSD---GTN 275 (417)
Q Consensus 203 i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~l~~l~~---~~~ 275 (417)
+..+.+++.. ....-. .+.+.+..+......+.. ..+..+..++.+ .++.+...++-+++.+.. ...
T Consensus 397 v~~i~~~I~~-~~~~~~-ea~~~l~~l~~~~~~Pt~----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 397 VKFIKDLIKS-KKLTDD-EAAQLLASLPFHVRRPTE----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHT-T-S-HH-HHHHHHHHHHHT-----H----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHc-CCCCHH-HHHHHHHHHHhhcCCCCH----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 4455666633 222222 233444444444323333 334445555543 345677777777776642 110
Q ss_pred ------HHHHHHHHcCChHHHHhhcC----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC--Cchh
Q 014864 276 ------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKS 343 (417)
Q Consensus 276 ------~~~~~~~~~~~~~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~ 343 (417)
......+...+++.+...+. ..+...+..++++|||+.. + ..++.+..++... ....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchH
Confidence 00011122235666666655 4566788899999999963 2 2355666666544 2678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHh
Q 014864 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNA 397 (417)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl 397 (417)
+|..|+|+|..++...++.+ .+.|+.++.+ .++++|..|..+|...
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 99999999999987767543 4456666654 4688999998888664
No 246
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.43 E-value=0.79 Score=37.50 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=75.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcC-----C--------------hHHHHhhcCCC-ChhhHHHHH
Q 014864 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-----V--------------FPRLAEFLMHP-SPSVLIPAL 306 (417)
Q Consensus 247 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-----~--------------~~~L~~~l~~~-~~~v~~~a~ 306 (417)
.+.-++.++++.++..++.++..|.++........-+.+ + =..|+..|..+ +..+....+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344556778999999999999999887654433222211 1 12344445544 677888999
Q ss_pred HHHHHhhcCChHHHHH-HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 307 RTVGNIVTGDDMQTQC-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 307 ~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
++++.++...+...-. -+-..++..+..++.+. |..++..+..+++-+.+.
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 9999999988854321 11223455566677787 999999999999988763
No 247
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=4.3 Score=40.00 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=95.3
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhh-CCCch----HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CC
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIA-GDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQ 235 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~-~~~~~----~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~ 235 (417)
|.|.+-|+.+|..++..|+..+.++- ..+|. -.+.+++. -...+..+| .++-+.++..|..-++...... ..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHH
Confidence 45556667789999999999999986 22222 23444433 355677788 7787888877776666555432 22
Q ss_pred CChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 236 PPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 236 ~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
.+...+...+..+..-+. +...+|+......|-++..++.. ..+++. ++|.+-..|.++...+|.++...|..|-.
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 222333334444443333 33568888889999988876543 234444 45677777778889999999988877743
No 248
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=0.7 Score=45.17 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=81.2
Q ss_pred HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH
Q 014864 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193 (417)
Q Consensus 114 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (417)
-.|++..++....+.+ ..+|+.++.+|..+.....+.-+.+. .+....+..-+.+..+.++.+|+.+|+.+-++...
T Consensus 83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 3556778888888888 89999999999999875444434344 36777777777788899999999999999744321
Q ss_pred HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
-+..++..+..++..++++++++.++..+.+
T Consensus 160 ----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 ----EECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 1234677888899888999999998765543
No 249
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.32 E-value=14 Score=39.92 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=73.4
Q ss_pred CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 014864 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364 (417)
Q Consensus 285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (417)
+++|.|..-|.+.+..+|..|...+|.+......+.. --........+.-+.+. +..||.+++....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 6889999999999999999999999999876654322 00112334445555566 778888888777777654443211
Q ss_pred HH------------------------------HHCC----CHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 365 AV------------------------------IEAN----IIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 365 ~l------------------------------~~~~----~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
.. +... ++..+-+.+.+....||+.|...|.-+-.
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 10 0111 23333344456778999999988877654
No 250
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.16 E-value=8.5 Score=38.30 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=93.1
Q ss_pred ChhHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhh
Q 014864 160 AVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSN 228 (417)
Q Consensus 160 ~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~ 228 (417)
.+..+..++.+ +++.++..|+-+++++.. +.+.+... +....++.+...+. +..+..-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 45566666664 456788888888888763 22211111 11225556665553 23455556777888888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhc-C--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHH
Q 014864 229 FCRGKPQPPFDQVSPALPALAHLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLI 303 (417)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~-~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~ 303 (417)
+... ..++.+...+. . .+..++..|+|+|..++...+... -+.+++++.+. ++++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 7764 33455555554 2 246799999999998876555433 35566666554 577888
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (417)
Q Consensus 304 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 347 (417)
.|+..|-.. .+.. ..+..+...+..+.+..|+..
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence 887766332 1222 124556666665545555443
No 251
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=93.02 E-value=2.8 Score=42.24 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=109.0
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
..+..++..|.|.|......+-..+...+..++.+ + ++..|+.+.-+... ..|+.+|..+-. |..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-W-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-H-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence 35789999999999999888888888887654222 2 26667765433331 455666665422 3222
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
..+..|-.++.. +.-+-.++..|+.+....+..--.+.+...+..|+++|..+.+..+...|+.+|..|.-.
T Consensus 70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 233445555554 456778999999999887777788899999999999998888999999999999888765
Q ss_pred CCCCChhhhhchHHHHHHhh
Q 014864 233 KPQPPFDQVSPALPALAHLI 252 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll 252 (417)
-|.........++.++..++
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 55444334444444444444
No 252
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.94 E-value=5.2 Score=37.07 Aligned_cols=232 Identities=18% Similarity=0.174 Sum_probs=121.6
Q ss_pred hhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh-hhcCCCCCCh
Q 014864 161 VPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPPF 238 (417)
Q Consensus 161 i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~-l~~~~~~~~~ 238 (417)
+..++.-+. +....++..++--|+.-+.+. .++..+...|....+++.+.+.++......++.++.. ++.+.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 555555555 345678888888888877755 5899999999999999999555554355444444444 4444333333
Q ss_pred hhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC---------CCChhhHHHHHHH
Q 014864 239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---------HPSPSVLIPALRT 308 (417)
Q Consensus 239 ~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~---------~~~~~v~~~a~~~ 308 (417)
......+..+..++..+ ..++..... .... ....... ......+...+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 23355566667777611 000000000 0000 0000000 011111222221 2233456667777
Q ss_pred HHHhhc-----CC---------hHHHHHHHHcCChHHHHHhhcC----CC-----------chhHHHHHHHHHHHHhcCC
Q 014864 309 VGNIVT-----GD---------DMQTQCVIEYQALPCLLNLLSG----NY-----------KKSIKKEACWTVSNITAGN 359 (417)
Q Consensus 309 L~~l~~-----~~---------~~~~~~~~~~~~l~~L~~ll~~----~~-----------~~~v~~~a~~~L~nl~~~~ 359 (417)
+-.++. ++ +...+.+...|++..++.++.. .. +...-..+.++|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 766641 11 1223445566889998888752 10 1123345777888887655
Q ss_pred HHHHHHHHH--CCCHHHHHHH----hccCCHHHHHHHHHHHHHhhCCC
Q 014864 360 REQIQAVIE--ANIIGPLVAL----LENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 360 ~~~~~~l~~--~~~i~~L~~~----l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
.++..+++. .+.++.+... ......++...++..+.|++-..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 555455543 2333333322 22333455678888999988763
No 253
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.88 E-value=8.5 Score=36.25 Aligned_cols=191 Identities=13% Similarity=0.124 Sum_probs=117.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhCCC---chhHHHHHhCCChhHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 014864 121 FVEFLLREDYPQLQFEAAWALTNIASGT---SEHTKVVIDHGAVPIFVKLLYS-------PSDDVREQAVWALGNIAGDS 190 (417)
Q Consensus 121 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~~-------~~~~i~~~a~~~L~nl~~~~ 190 (417)
+..+++..+ ++-++.|+...+.++.+. ...++.+.+.-+.+.+-+++.+ ++.-.+..++..|..+|++.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 555666666 688899999999998864 3456668888778888888864 33455777888888888765
Q ss_pred chH-HHHHHhcCCHHHHHHHhcCCCchh------HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh----HH
Q 014864 191 PRC-RDLVLSQGGLVPLLAQLNGQPKLS------MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD----EV 259 (417)
Q Consensus 191 ~~~-~~~~~~~g~i~~L~~ll~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~----~v 259 (417)
+-. ...++. .||.|+..+.+..|++ +...+..+|..++...+........|+++.+.++-.-++- .+
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 421 122222 5888888886555554 8889999999999987666666778999999877644332 22
Q ss_pred HHHHHHH-HHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 260 LTDACWA-LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 260 ~~~a~~~-l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
...+... ...+-..++. ...+.. ++..+..=+...+...+-..|+.|+.+.....
T Consensus 173 al~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~ 228 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEY 228 (698)
T ss_pred HHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCh
Confidence 1111111 1111112211 111111 13333333334455567788888886655443
No 254
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.62 E-value=0.53 Score=33.69 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=62.8
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 014864 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKY 408 (417)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 408 (417)
+...+..+.++ .+.+|..+...|..+..... ....--.+++..+...++++|+-|=-.|+.+|..++......-++.
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 34566777888 88999999999999997544 1111124677888899999999999999999999999866667777
Q ss_pred HHhc
Q 014864 409 EHTF 412 (417)
Q Consensus 409 l~~~ 412 (417)
|++.
T Consensus 82 L~~~ 85 (92)
T PF10363_consen 82 LLDE 85 (92)
T ss_pred HHHH
Confidence 7754
No 255
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.49 E-value=1.2 Score=35.86 Aligned_cols=146 Identities=10% Similarity=0.101 Sum_probs=85.8
Q ss_pred hchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHHHHhhcCChHH
Q 014864 242 SPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQ 319 (417)
Q Consensus 242 ~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~ 319 (417)
...++.|..+++++ +..++.+++.+++.|..-++...+.+... .+ ..- ...+.......+...+ .....++
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~~~~-~~~~~ee- 81 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLPMMG-ISPSSEE- 81 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHhhcc-CCCchHH-
Confidence 45678888888766 68999999999999987777654422211 01 000 1111112222221111 1111222
Q ss_pred HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
..-..++..|+.+|+++.-..-...++.++.++... ......++- .++|.+++.+...+...++...+-|+.++
T Consensus 82 ---~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 ---YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred ---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222345677888888774444555677777777642 122233332 48999999999777788888888888775
Q ss_pred C
Q 014864 399 S 399 (417)
Q Consensus 399 ~ 399 (417)
.
T Consensus 157 ~ 157 (160)
T PF11865_consen 157 S 157 (160)
T ss_pred H
Confidence 3
No 256
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.32 E-value=3.1 Score=42.09 Aligned_cols=195 Identities=21% Similarity=0.202 Sum_probs=117.1
Q ss_pred HHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHH--HHHHHhcCCCch
Q 014864 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV--PLLAQLNGQPKL 216 (417)
Q Consensus 140 ~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~ll~~~~~~ 216 (417)
+|.++...+++....+++.|++..+...++. .+.+++..++..++|++...+ .+........+. .+-.++....+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6778888889999999999999999999985 678899999999999986543 222222111222 333344344455
Q ss_pred hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-
Q 014864 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM- 295 (417)
Q Consensus 217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~- 295 (417)
+.-..++..++.+....+.... .+. -+.+......++.+..... .......-+.+.+..++.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~---~~~-----------r~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTE---CVF-----------RNSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL 635 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCcc---ccc-----------hHHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence 6777777777777765432110 000 1112222222222222111 111122212222444444
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
+..+..+..|++++.+++...++....+.+.++++.+.+.-.......++..+...+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 345678899999999999998888888888899888877765542334444444333
No 257
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.16 E-value=2.5 Score=39.11 Aligned_cols=131 Identities=17% Similarity=0.121 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hh--CCCCHHHHHHHHHHHHHhhCCCchH------------HH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LL--YSPSDDVREQAVWALGNIAGDSPRC------------RD 195 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll--~~~~~~i~~~a~~~L~nl~~~~~~~------------~~ 195 (417)
..-+..|+..+..++....+....++. +.+..++. +- .+.+..-++.|+..++.++...... -.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 456777888888888643332222221 22332222 11 1356788999999999998654211 12
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHH
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL 267 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 267 (417)
.+....+++.|. -..+..+-++..|++.+..+-.. .+......++|.++.+|.+++.-|..+|+.++
T Consensus 304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~---l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ---LPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG---S-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 233333444443 12345677888899998888765 33567788999999999999999999988765
No 258
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=14 Score=37.12 Aligned_cols=320 Identities=13% Similarity=0.124 Sum_probs=178.4
Q ss_pred HHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 75 LPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 75 l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
...++++++.. |..++..+++.++-++..- +-.-+.+. -.+....+..++.....-+.+...+..|+-+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 45667777774 7888999999998776542 11112111 13334455556654433466777777777776543333
Q ss_pred HHHHHhCCChhHHHHhhC---CCCHHHHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHhcCCC---chhHHHH
Q 014864 152 TKVVIDHGAVPIFVKLLY---SPSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRN 221 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~---~~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~ 221 (417)
..... +.+-.++..|- ...+-++.+.+.+|.|+.. .++.+.. ++-+.+.+-.+.+ +..+.+.
T Consensus 607 I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 607 IAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred hhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhh
Confidence 32111 11222222221 2556678888888888862 2222222 2334444442222 3345556
Q ss_pred HHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH-HhccCChHHHHHHHHcCChHHHHhhcCCCChh
Q 014864 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300 (417)
Q Consensus 222 a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 300 (417)
+...........+... ...-..+|.+...+....+.++. ++..+. |..-.+.. .-.....|+++.+..++.+-..+
T Consensus 679 gmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~e 755 (978)
T KOG1993|consen 679 GMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNE 755 (978)
T ss_pred HHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHH
Confidence 5555555554433222 23356778888877655433322 222222 22222222 22234457888888888876666
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHH---
Q 014864 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPL--- 375 (417)
Q Consensus 301 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L--- 375 (417)
-....+.++-.+...++ ........++++.++.-+-. ...|.+...-..+++.+.-.+++..-.++. .+-...+
T Consensus 756 gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~ 834 (978)
T KOG1993|consen 756 GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAM 834 (978)
T ss_pred HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHH
Confidence 67777777777776555 33445566788876665532 226778888888888888777776555542 2222222
Q ss_pred -----HHHhcc-CCHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864 376 -----VALLEN-AEFDIKKEAAWAISNATSGGTHEQIK 407 (417)
Q Consensus 376 -----~~~l~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 407 (417)
+.+..+ .+++-|+--+-++..+...+.+.-..
T Consensus 835 li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila 872 (978)
T KOG1993|consen 835 LIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILA 872 (978)
T ss_pred HHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHH
Confidence 233332 47888999999999998876554433
No 259
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.04 E-value=12 Score=42.19 Aligned_cols=263 Identities=13% Similarity=0.053 Sum_probs=140.9
Q ss_pred CChHHHHHHHHHHHHhhhCC--CCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChh
Q 014864 85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162 (417)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 162 (417)
.+..+...|+..|++++... ..+....-.+..++.+|..++.+....+++..++.|+.++..... ..+. . +-+
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIk-S-GWk 1223 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVK-S-GWK 1223 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhh-c-CcH
Confidence 35677888888888875432 112122223456788888878766668999999999999876422 2222 2 444
Q ss_pred HHHHhhC----CCCHHHHHHHHHHHHHhhCCCchH-----HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh----
Q 014864 163 IFVKLLY----SPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF---- 229 (417)
Q Consensus 163 ~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l---- 229 (417)
.++.++. +.++.+...|..++..|+.+.-.. .+.+. ..+..+..+..+..+.++--.++..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 4555544 467889999999888876542110 01111 13444444443333444444444444433
Q ss_pred hcCC-----C------------------C------CChhhhhchHHH---HHHhhcCCChHHHHHHHHHHHHhccCCh--
Q 014864 230 CRGK-----P------------------Q------PPFDQVSPALPA---LAHLIHSNDDEVLTDACWALSYLSDGTN-- 275 (417)
Q Consensus 230 ~~~~-----~------------------~------~~~~~~~~~l~~---L~~ll~~~~~~v~~~a~~~l~~l~~~~~-- 275 (417)
+... . . ........-+|. |..+..+++.+|+..|+.+|..+.....
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1110 0 0 000001223344 4444566789999999998887754322
Q ss_pred ---HHHHHHHHcCChHHHHhhcCCC------------------C------h--hhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864 276 ---DKIQAVIEAGVFPRLAEFLMHP------------------S------P--SVLIPALRTVGNIVTGDDMQTQCVIEY 326 (417)
Q Consensus 276 ---~~~~~~~~~~~~~~L~~~l~~~------------------~------~--~v~~~a~~~L~~l~~~~~~~~~~~~~~ 326 (417)
+.=..++. +++-.++..+++. + | +....|++.+..+....-+.... +-.
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~ 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LLK 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 11122222 3444444444310 0 1 22333444444444322222222 122
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
+++..|...+..+ +..+-+.++.+|.++..
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 5556666666777 88888888888888875
No 260
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=3.5 Score=40.56 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=109.8
Q ss_pred CCCchhHHHHHHHHHhhhhcCC-CCCChh----hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 014864 212 GQPKLSMLRNATWTLSNFCRGK-PQPPFD----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286 (417)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~-~~~~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 286 (417)
+-.+..++.+|+..+.++.--. |....+ .+..-...+..+|.++-+.|+..+...++.....--+.+..-+-..+
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~l 263 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDL 263 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6678899999999999887543 333222 23455667888999999999999888777765322221111111123
Q ss_pred hHHHHhhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 014864 287 FPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (417)
Q Consensus 287 ~~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (417)
+..+.+-+.. ...++|......|..++....... +++ .++|.+-..|.++ ...||..+...|..|-....-+...
T Consensus 264 l~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~--~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik~vra~~f~~ 339 (1005)
T KOG1949|consen 264 LKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP--LLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIKAVRAAKFWK 339 (1005)
T ss_pred HHHHHHHhhhccchheehhHhcCcHHHHcCccchh--HHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHHhhhhhhhhc
Confidence 3344444433 346899999999988887665332 222 4567788888888 8999999999988885532222222
Q ss_pred HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
++ -...++..|..++..+.+..+..|.|..
T Consensus 340 I~---~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 340 IC---PMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred cc---cHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 21 1334444455555555444444444443
No 261
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.01 E-value=25 Score=39.69 Aligned_cols=276 Identities=13% Similarity=0.132 Sum_probs=147.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCchhHH---HHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC
Q 014864 127 REDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (417)
Q Consensus 127 ~~~~~~~~~~a~~~L~~l~~~~~~~~~---~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~ 202 (417)
+.+ ..+...|+..|..++..--+..+ .-.+...+..|..++. +.+.++++..+.++.++...... -+.. +
T Consensus 1148 ~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS-G 1221 (1780)
T PLN03076 1148 SEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS-G 1221 (1780)
T ss_pred Ccc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc-C
Confidence 344 67888888888887763221111 1122245666666665 46789999999999998743221 1233 4
Q ss_pred HHHHHHHhc---CCCchhHHHHHHHHHhhhhcCC-C---CCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHh----
Q 014864 203 LVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-P---QPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYL---- 270 (417)
Q Consensus 203 i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~~~-~---~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l---- 270 (417)
-..++.++. .+.++.+...+..++..++.+. + .........++.++..+.... +.++--.++..|.++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 444444442 4556778888888887776653 2 111244456666666666443 344544555444433
Q ss_pred ccCCh-----------------------HHHH-----HHHHcCChHHHH---hhcCCCChhhHHHHHHHHHHhhcCC---
Q 014864 271 SDGTN-----------------------DKIQ-----AVIEAGVFPRLA---EFLMHPSPSVLIPALRTVGNIVTGD--- 316 (417)
Q Consensus 271 ~~~~~-----------------------~~~~-----~~~~~~~~~~L~---~~l~~~~~~v~~~a~~~L~~l~~~~--- 316 (417)
+.+.. +... .......++.|. .+..+..++||..|+.+|-.+....
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 11100 0000 000112344433 3355677899999999987776322
Q ss_pred --hHHHHHHHHcCChHHHHHhhcCCC----------------------chhHHHHHHHHHHHHhc---CCHHHHHHHHHC
Q 014864 317 --DMQTQCVIEYQALPCLLNLLSGNY----------------------KKSIKKEACWTVSNITA---GNREQIQAVIEA 369 (417)
Q Consensus 317 --~~~~~~~~~~~~l~~L~~ll~~~~----------------------~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~ 369 (417)
++....++. +++-+++..+++.. +..+...+..+|.+++. ..-+.+..+.+
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 223333333 44555555553210 00122333334444433 22233333333
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC----CHHHHHHHH
Q 014864 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGG----THEQIKYEH 410 (417)
Q Consensus 370 ~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~l~ 410 (417)
+++..|..++...+..+....+.+|.+++... +.++...++
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~ 1504 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVV 1504 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 56666666667788888899999999888764 344444443
No 262
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.99 E-value=8.9 Score=36.46 Aligned_cols=229 Identities=10% Similarity=0.097 Sum_probs=106.0
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhCC----CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCC
Q 014864 164 FVKLLYS-PSDDVREQAVWALGNIAGD----SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPP 237 (417)
Q Consensus 164 L~~ll~~-~~~~i~~~a~~~L~nl~~~----~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~ 237 (417)
+....++ .++..-+....+++.+... ++... .-++...++.+..+| +..-.+..-++...++.|.+..+ ...
T Consensus 76 l~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~ 153 (435)
T PF03378_consen 76 LKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPL 153 (435)
T ss_dssp HHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S-
T ss_pred HHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3333344 4566666666666666532 22111 123444677777777 55555677777777777776654 222
Q ss_pred hhhhhchHHHHHHh-hcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH----hhcCCCChhhHHHHHHHHHHh
Q 014864 238 FDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA----EFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 238 ~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~----~~l~~~~~~v~~~a~~~L~~l 312 (417)
.......+|.|+.- +-.....+ -...+.|......... .+...+-+..++ +++.+... -..+...|..+
T Consensus 154 p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~---~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~i 227 (435)
T PF03378_consen 154 PDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPS---FIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESI 227 (435)
T ss_dssp -TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGG---G----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCch---hhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHH
Confidence 33445555554432 21111112 1222233222211111 112222333333 34444432 24566777777
Q ss_pred hcCChHH-HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH---CCCHHHHHHHh-----cc-
Q 014864 313 VTGDDMQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIE---ANIIGPLVALL-----EN- 381 (417)
Q Consensus 313 ~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~~l-----~~- 381 (417)
...-+.. .+..+ ..++..++.-|++...+...+.-+..++.++. .+++..-..++ .|++..++.-+ ..
T Consensus 228 v~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~ 306 (435)
T PF03378_consen 228 VENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKV 306 (435)
T ss_dssp HHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG-
T ss_pred HHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhc
Confidence 6555432 12111 13444555556655466777777777776664 34554444443 56666666532 11
Q ss_pred CCHHHHHHHHHHHHHhhCCC
Q 014864 382 AEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 382 ~~~~v~~~a~~~L~nl~~~~ 401 (417)
..+.=|+-++-.++++...+
T Consensus 307 ~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 307 SGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp -SHHHHHHHHHHHHHHHHSS
T ss_pred CCcchhhHHHHHHHHHHhcc
Confidence 23444777778888876543
No 263
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.63 E-value=3.2 Score=36.64 Aligned_cols=146 Identities=19% Similarity=0.172 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhCC--ChhHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CH
Q 014864 132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GL 203 (417)
Q Consensus 132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i 203 (417)
+.++-++..++-++.+ +.....+...+ ....+..++. +..+..+-.++++++|+..... .+..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence 4466777777666664 43333343322 2334444332 2567888899999999988766 455555432 34
Q ss_pred HHHHHHhcCCC---chhHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhh-cC-CChHHHHHHHHHHHHhccCChH
Q 014864 204 VPLLAQLNGQP---KLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HS-NDDEVLTDACWALSYLSDGTND 276 (417)
Q Consensus 204 ~~L~~ll~~~~---~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll-~~-~~~~v~~~a~~~l~~l~~~~~~ 276 (417)
...+..+..+. +..++..++..+.|++... ...........+..+...+ .. .|+++...++-+++++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 44444442333 7888999999999998643 1112222234566666633 33 5899999999999999976655
Q ss_pred HHH
Q 014864 277 KIQ 279 (417)
Q Consensus 277 ~~~ 279 (417)
..+
T Consensus 236 ~~~ 238 (268)
T PF08324_consen 236 AKQ 238 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 264
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=91.49 E-value=11 Score=34.66 Aligned_cols=157 Identities=12% Similarity=0.084 Sum_probs=88.3
Q ss_pred HHHHHhhhcCCC-hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc---CC------CCHHHHHHHHHHHHHH
Q 014864 75 LPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---RE------DYPQLQFEAAWALTNI 144 (417)
Q Consensus 75 l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~---~~------~~~~~~~~a~~~L~~l 144 (417)
...+.+.|..+- +..+...+..++-+ +.+ ....+-+.....++.|..+-. .. .+..+..++..||+|+
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrIL-SRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRIL-SRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHH-hcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 345566666554 45566667777644 443 111111111112333433322 11 1257899999999999
Q ss_pred hCCCchhHHHHHhCCChhHHHHhhCCC-----CHHHHHHHHHHHHHhhCCCchHHH-HHHhcCCHHHHHHHhcCC-----
Q 014864 145 ASGTSEHTKVVIDHGAVPIFVKLLYSP-----SDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQ----- 213 (417)
Q Consensus 145 ~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~i~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~~~----- 213 (417)
..+++..++...+......+++.+... ...+...-+..|.-+..-.+..|. .+.+.++++.+.+.+.+.
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids 204 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS 204 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence 999999999999888887777766331 112223333334333333333444 456778888888888421
Q ss_pred ---------CchhHHHHHHHHHhhhhcCC
Q 014864 214 ---------PKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 214 ---------~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+......++.++.|++.++
T Consensus 205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 205 EINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 11234455666777777665
No 265
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=4.4 Score=41.87 Aligned_cols=290 Identities=18% Similarity=0.135 Sum_probs=159.6
Q ss_pred hccCHHHHHh-hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC--
Q 014864 71 KLENLPVMVA-GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-- 147 (417)
Q Consensus 71 ~~~~l~~l~~-~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-- 147 (417)
+++++..+-. +|++++.+.+...+..+.++.+.+ .++-...-+.--+|.|+.-+..-. ..+|...+.+|-.-...
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn 541 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN 541 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence 3444444443 456788889999999888887654 444444445566888887777655 56666665554332220
Q ss_pred -CchhHHHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC---chhHHHHH
Q 014864 148 -TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNA 222 (417)
Q Consensus 148 -~~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~a 222 (417)
-|++ -+-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|...+.++. .++- .
T Consensus 542 cvPeq--------ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-y-- 610 (2799)
T KOG1788|consen 542 CVPEQ--------ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-Y-- 610 (2799)
T ss_pred cCcHH--------HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-h--
Confidence 0111 122356667654 3445555666666777777778999999999999888774421 0100 0
Q ss_pred HHHHhhhhcCCCCC-Chhhh---hchHHHHHHhhcCC---ChH--H---HHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 014864 223 TWTLSNFCRGKPQP-PFDQV---SPALPALAHLIHSN---DDE--V---LTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (417)
Q Consensus 223 ~~~l~~l~~~~~~~-~~~~~---~~~l~~L~~ll~~~---~~~--v---~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 290 (417)
...+.....+|.. .+... ...+-.--.+..+. ++- + ..-.-.+|..+..++.++...+.+..++..+
T Consensus 611 -sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvkli 689 (2799)
T KOG1788|consen 611 -SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLI 689 (2799)
T ss_pred -hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEE
Confidence 0111111111111 11000 00000001111111 110 0 1111335666667777777778888888888
Q ss_pred HhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-----------chhHHHHHHHHHHHHhcCC
Q 014864 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----------KKSIKKEACWTVSNITAGN 359 (417)
Q Consensus 291 ~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~~v~~~a~~~L~nl~~~~ 359 (417)
++++- +...|...++++..+....+.+.. +.-+-.++..|+++- ..........++..+...+
T Consensus 690 lpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvn 763 (2799)
T KOG1788|consen 690 LPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVN 763 (2799)
T ss_pred EEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccC
Confidence 88884 345688889999998877775432 122344555665521 2234445556666666544
Q ss_pred HHHHHHHHHCCCHHHHHHHhc
Q 014864 360 REQIQAVIEANIIGPLVALLE 380 (417)
Q Consensus 360 ~~~~~~l~~~~~i~~L~~~l~ 380 (417)
......+-+++.+..|...|.
T Consensus 764 gsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 764 GSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred chheeehhccccHHHHHHHHH
Confidence 444445557788888777663
No 266
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=91.19 E-value=9.3 Score=33.08 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchHHHHHHhcCCH
Q 014864 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD--------VREQAVWALGNIAGDSPRCRDLVLSQGGL 203 (417)
Q Consensus 132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~--------i~~~a~~~L~nl~~~~~~~~~~~~~~g~i 203 (417)
.....|+..|+.+-. ..+.+.++++++.++.. +.+....++.. +..|-+
T Consensus 57 ~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilas------------v~~G~~ 113 (249)
T PF06685_consen 57 NLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILAS------------VGDGDI 113 (249)
T ss_pred HHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHH------------HhCCCH
Confidence 345566666665533 36889999999765532 12222222222 234557
Q ss_pred HHHHHHhcCCC-chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHH
Q 014864 204 VPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAV 281 (417)
Q Consensus 204 ~~L~~ll~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~ 281 (417)
..|..++.+.. +.-++..++.++..+....+......+.-.-..+-..+..++..+....+..++.|... -...++.+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~ 193 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKA 193 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHH
Confidence 77777774443 67788899999999999876655555444444444445544444444444344433211 11233444
Q ss_pred HHcCChH
Q 014864 282 IEAGVFP 288 (417)
Q Consensus 282 ~~~~~~~ 288 (417)
.+.|.++
T Consensus 194 f~~~lVd 200 (249)
T PF06685_consen 194 FEDGLVD 200 (249)
T ss_pred HHcCCCC
Confidence 5555544
No 267
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=91.07 E-value=12 Score=34.18 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=84.3
Q ss_pred HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHHc-C-ChHHHHHhhcCCC----c--------hhH
Q 014864 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY-Q-ALPCLLNLLSGNY----K--------KSI 344 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~ll~~~~----~--------~~v 344 (417)
.+++.. ++.+...|.+..+.+..++++.|..++. ........++.. . -.+.+..++.... . +.+
T Consensus 52 ~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~si 130 (330)
T PF11707_consen 52 SILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSI 130 (330)
T ss_pred HHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCH
Confidence 344443 7888889999988899999999999998 565666666643 2 2234555553221 1 288
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 345 KKEACWTVSNIT-AGNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 345 ~~~a~~~L~nl~-~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
|......+..+. .+++.....++ +.+.+..+++-|..+++++....+.+|..-+.
T Consensus 131 R~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl 187 (330)
T PF11707_consen 131 RTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVL 187 (330)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhc
Confidence 888886555554 57777666666 56789999999999899999999999986444
No 268
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.71 E-value=1.9 Score=35.96 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhCCCc-hhHHHHHhCCChh
Q 014864 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTS-EHTKVVIDHGAVP 162 (417)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~ 162 (417)
.-...|+..+.-+++. ++....+++..+--.+-.+|...+ .+-++..++.+++.+...++ .....+....++|
T Consensus 115 nRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 115 NRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 3344566666656553 344444666664333444554322 35688899999999998654 4556666778999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH-------hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~-------~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
..++++..+++.-+..++.+++.+..++....-... -...+..++..+-+.....+.+.++.+...||..
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 999999998888888999999999887764322111 1112233333332334455566666666555554
No 269
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.67 E-value=1.6 Score=35.27 Aligned_cols=110 Identities=24% Similarity=0.177 Sum_probs=72.1
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC---C
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---P 234 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~---~ 234 (417)
.+..+..+|.++++.-+..++..+.-++..++. +.+.+.+ .+..++..+.+.....+.+.++.++..+...- |
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677889988888888888888888876532 3333333 36788899977778888999999999888643 3
Q ss_pred CCChhhh----hchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864 235 QPPFDQV----SPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 235 ~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 273 (417)
.-..+.. ..+++.++.+++. ......++.+|..+...
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 3222333 3344444555443 45556666666666543
No 270
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.44 E-value=1.1 Score=35.06 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=60.2
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 146 (417)
+++..+.+.|+++++.++..|+..|..++.....+...++.+.+++..|+.+++...++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56788888999999999999999999887764455666788889999999999864447899888888877665
No 271
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=90.26 E-value=2.7 Score=47.84 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=111.6
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhhhhc
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~ 231 (417)
....+.+..+...+.++.-.+++.+...+++++..+|.+.-..+.. ..+..+. .+.-.-+...+..-+..+..
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMARTKEESAKLLCELII 636 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence 3334555666667777888899999999999998777432221111 1122221 11111111111111111111
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-CChhhHHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVG 310 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~ 310 (417)
..+.-........+..++..+..++..+...+..+++.|+...........+ ..++.+.+.+.. .+..-+..++++++
T Consensus 637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 1111111222445566677777777788888888999888655533333344 455556555553 34566788999999
Q ss_pred HhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 311 NIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
++.+........... .-++..+...+.......++.++...++++...
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 998765432221111 245566666666665677888888888877654
No 272
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=23 Score=35.81 Aligned_cols=272 Identities=12% Similarity=0.098 Sum_probs=135.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh--CCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
..++.++.+.++..++..++.++.-...+-.-..+.+.. ......+.+++.. ...+.+...+.+|+.+.....+...
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 345556665543556666666666555532111121111 1233344444443 3445556667777766543222111
Q ss_pred HHHhcCCHHHHHHHhcCC-CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCCh---HHHHHHH--H--HH
Q 014864 196 LVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD---EVLTDAC--W--AL 267 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~---~v~~~a~--~--~l 267 (417)
. ....++..+-.+-..+ ..+-++...+.++.|+...-.........-.+|.+-....-+.| -..++++ | +|
T Consensus 609 P-~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L 687 (978)
T KOG1993|consen 609 P-YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTL 687 (978)
T ss_pred H-HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHH
Confidence 1 0111122222222233 34556667778888888765444444444444544433322222 2334433 3 23
Q ss_pred HHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (417)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 347 (417)
.|...-.++. . +.+|.+...+......+ ..++.++....--+......-...|+...+..++.+- ..+-...
T Consensus 688 ~n~~~l~p~l----l--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~a 759 (978)
T KOG1993|consen 688 MNSQKLTPEL----L--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQA 759 (978)
T ss_pred hcccccCHHH----H--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 3332222222 1 35677777776554333 3344444333322221111123347777888888766 5555666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc--cCCHHHHHHHHHHHHHhhCC
Q 014864 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLE--NAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~--~~~~~v~~~a~~~L~nl~~~ 400 (417)
.+.++.++...++ ........+++|.+...+- .+.|-+-..-+.+++.+...
T Consensus 760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~ 813 (978)
T KOG1993|consen 760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR 813 (978)
T ss_pred HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence 6777777766555 4555566788888777653 34566666667777766655
No 273
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=89.99 E-value=21 Score=35.10 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=64.7
Q ss_pred hHHHHhhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHH
Q 014864 287 FPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNRE 361 (417)
Q Consensus 287 ~~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~ 361 (417)
+..+...+.... +.-....||++|.++..-.+....-.--+++..|+.+..-. +-+..-+.+-+|+.. ..|.
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemK---rgKdnKAVvASnIMyvvGQYpR 559 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMK---RGKDNKAVVASNIMYVVGQYPR 559 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHh---hcCCcchhhecceeeeeccchH
Confidence 455656665554 55567899999999854433322222223455555554322 112222223344432 2232
Q ss_pred HHHHHH--HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 362 QIQAVI--EANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 362 ~~~~l~--~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
....-+ -..++..|.++++..+..++..||.....++..+.
T Consensus 560 FLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~ 602 (1053)
T COG5101 560 FLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCP 602 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCc
Confidence 211111 12578889999999999999999999998887754
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.92 E-value=1.3 Score=34.73 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=61.4
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 146 (417)
+.+..+.+.|.+.++.++..|+..+..++.........++....++..|+.+++...++.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999888766555666788889999999999984448999999888888765
No 275
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=24 Score=35.76 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=31.0
Q ss_pred hhhccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCC
Q 014864 69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERS 106 (417)
Q Consensus 69 ~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~ 106 (417)
++-+..+|.++..|.++...+.--|+.++.+++....+
T Consensus 494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 34455689999999999999999999999999876533
No 276
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.89 E-value=4.7 Score=31.21 Aligned_cols=76 Identities=12% Similarity=-0.009 Sum_probs=61.1
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-HHHHHHhcCCHHHHHHHhcC--CCchhHHHHHHHHHhhhhcCCC
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~ll~~--~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
.++..|-+-|.++++.++..|+.+|-.+..+... +...+....++..|++++.. ..++.++..++..+.......+
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3567777888889999999999999999866544 77888887888889999955 4578899999988888776543
No 277
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.88 E-value=1.9 Score=35.97 Aligned_cols=106 Identities=9% Similarity=0.103 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHH
Q 014864 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLV 376 (417)
Q Consensus 302 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~ 376 (417)
...|+..|..+++.. +....++++.+--.+...|... ..+.+|-.+..+++.+.. +++..+..+....++|.++
T Consensus 117 vcnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345666666666544 4444455655544455555322 256788899999999987 6777888888899999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 014864 377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKYEH 410 (417)
Q Consensus 377 ~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~ 410 (417)
++++.+..--+.-|+..+..+... ..-++|++
T Consensus 196 rIme~gSElSktvaifI~qkil~d--DvGLqYiC 227 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGD--DVGLQYIC 227 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHH
Confidence 999988877777788888777663 34444443
No 278
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=89.52 E-value=16 Score=33.31 Aligned_cols=155 Identities=18% Similarity=0.103 Sum_probs=102.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhC-CCchhHHHHHhC--CChhHHHHhhCC-----CC--------HHHHHHHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDH--GAVPIFVKLLYS-----PS--------DDVREQAVW 181 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~--g~i~~L~~ll~~-----~~--------~~i~~~a~~ 181 (417)
+..+...|++.. ..+...++..|..++. ........+... --.+.|.+++.. .. +.+|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 777888889888 7888899999999999 665666666654 223466666632 11 278888877
Q ss_pred HHHHhh-CCCchHHHHHHhc-CCHHHHHHHhcCCCchhHHHHHHHHHhh-hhcCCC--CCCh--hhhhchHHHHHHhhcC
Q 014864 182 ALGNIA-GDSPRCRDLVLSQ-GGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKP--QPPF--DQVSPALPALAHLIHS 254 (417)
Q Consensus 182 ~L~nl~-~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~a~~~l~~-l~~~~~--~~~~--~~~~~~l~~L~~ll~~ 254 (417)
.+..+. ..++..+..+++. +.+..+++-+ ..++.++...++.++.. +..+.. .... ......+..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 666655 4455566655554 4567778887 55677888888888874 444431 1111 2225678888887776
Q ss_pred CCh----HHHHHHHHHHHHhccCC
Q 014864 255 NDD----EVLTDACWALSYLSDGT 274 (417)
Q Consensus 255 ~~~----~v~~~a~~~l~~l~~~~ 274 (417)
+++ .+...+-..|..+|..+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCC
Confidence 666 66666666666666544
No 279
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=39 Score=37.79 Aligned_cols=271 Identities=17% Similarity=0.117 Sum_probs=134.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
+..++..|...+ +..+..++.++..++..-+.. .++. +....+++-+.+ .++-.|..-..+++.+-.+....-..
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 334444555555 677777777777776631111 1111 233444454544 44444544455555554222111111
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChH
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 276 (417)
-.....+..++.+..++.++.++..++.++..+...............+..+..++-+..+ ...+.-.++...-.+++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence 1122246667777766677899999999999988876433455556666666666654321 111111222222111110
Q ss_pred -------------------HHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc
Q 014864 277 -------------------KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (417)
Q Consensus 277 -------------------~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 337 (417)
....+. .-.+-...-++.++++.++..+..++-++-...+.... -.-+++.+..++.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~r-ts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLR-TSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHH-HHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 111111 11223333445667888899999999888765553322 1234666666666
Q ss_pred CCCchhHHHHHHHHHHHHhcCCH-H---HHH-------------H-HH-HCCCHHHHHHHhc-cCCHHHHHHHHHHHHHh
Q 014864 338 GNYKKSIKKEACWTVSNITAGNR-E---QIQ-------------A-VI-EANIIGPLVALLE-NAEFDIKKEAAWAISNA 397 (417)
Q Consensus 338 ~~~~~~v~~~a~~~L~nl~~~~~-~---~~~-------------~-l~-~~~~i~~L~~~l~-~~~~~v~~~a~~~L~nl 397 (417)
+. ..-.|.....++..+..... + ..+ . .. +.|+=-.+..+++ ..|.+..+.....+.++
T Consensus 1109 s~-~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRM 1187 (2067)
T ss_pred ch-hhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 65 33444444444444432110 0 000 0 01 2333334444444 33567777777787774
Q ss_pred h
Q 014864 398 T 398 (417)
Q Consensus 398 ~ 398 (417)
.
T Consensus 1188 ~ 1188 (2067)
T KOG1822|consen 1188 L 1188 (2067)
T ss_pred H
Confidence 3
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.48 E-value=6.2 Score=30.93 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=61.7
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.++..|.+-|.++++.++..|+.+|-.+..+ +..+...+...+++..|.+++....++.++..++..+..-+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4567777888889999999999999888866 45588888899999999999966678889988888887777653
No 281
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.07 E-value=1.2 Score=37.83 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCcHHHHHHh-------CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH-HHhC
Q 014864 87 SGVQYECTTQFRKLLSIERSPPIEEVIRS-------GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV-VIDH 158 (417)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-------g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-i~~~ 158 (417)
-.-|..|+.+++|+.-.+ .+++.+... .++..|+++|....++..++-|+-.|.+++.++...... ..+.
T Consensus 138 lSPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 356888999999996553 333333322 246677788887766889999999999999987666544 4456
Q ss_pred CChhHHHHhhCCC
Q 014864 159 GAVPIFVKLLYSP 171 (417)
Q Consensus 159 g~i~~L~~ll~~~ 171 (417)
++|..|+.++.+.
T Consensus 216 ~~i~~Li~FiE~a 228 (257)
T PF12031_consen 216 PCISHLIAFIEDA 228 (257)
T ss_pred chHHHHHHHHHHH
Confidence 8999999999753
No 282
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.99 E-value=12 Score=30.96 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=58.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
.++.++++..+++ ..++..|+.++..+....--+ -...+|.|+.+..++++.++..|...+..+....+..-..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3667777777788 899999999988877632111 0136899999999999999999999999998766654443
Q ss_pred HHhcC
Q 014864 197 VLSQG 201 (417)
Q Consensus 197 ~~~~g 201 (417)
-...|
T Consensus 83 ~~~~g 87 (187)
T PF12830_consen 83 RYSEG 87 (187)
T ss_pred HHHHH
Confidence 33333
No 283
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.94 E-value=1.7 Score=33.65 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=57.9
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~-~~~~a~~~L~~l~~ 146 (417)
+++..+.+.|+++++.++..|+..+-.++.....+...++...+++..|+.+++...... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999998887654555666778889999999988765333 78887777776654
No 284
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=88.25 E-value=5.8 Score=35.30 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=48.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH-HHHHhCCChhHH----HHhhC--------CCCHHHHHHHHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPIF----VKLLY--------SPSDDVREQAVWAL 183 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L----~~ll~--------~~~~~i~~~a~~~L 183 (417)
++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+ ..++. .....+...+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 5999999999988 9999999999999998544333 235555654433 33333 24456677777777
Q ss_pred HHhh
Q 014864 184 GNIA 187 (417)
Q Consensus 184 ~nl~ 187 (417)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 285
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=87.82 E-value=0.59 Score=27.19 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=24.4
Q ss_pred HhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhh
Q 014864 11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR 49 (417)
Q Consensus 11 ~~~~~~k~~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r 49 (417)
+|...||+..+..+.-+|| +...+.-|.+|-+.++..|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence 5778899854444444444 4556777888877777665
No 286
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.62 E-value=3.4 Score=32.00 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=58.2
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~ 146 (417)
+.+..+.+.|+++++.++..|+..+..++.....+...++....++..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999887765344555566668888899999863 347899998888887765
No 287
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=87.50 E-value=14 Score=35.97 Aligned_cols=218 Identities=10% Similarity=0.056 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc--C--------CCchhHHHHHHHHHhhhhcCCCCCChh
Q 014864 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--G--------QPKLSMLRNATWTLSNFCRGKPQPPFD 239 (417)
Q Consensus 170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~ 239 (417)
+++.+|...|-..|-.+..+-+ +...+..|..+.. . .-++.++..++..|+ +.. ....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~--~Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSV--IAAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhH--HHHh
Confidence 4677888888888888875521 2224566666664 1 124555555554444 321 0011
Q ss_pred hhhchHHHHHHhhcCC--ChHHHHHHHHHH---HHhccCCh-HHH---HHHHHcCChHHHHh----hcCCCChhhHHHHH
Q 014864 240 QVSPALPALAHLIHSN--DDEVLTDACWAL---SYLSDGTN-DKI---QAVIEAGVFPRLAE----FLMHPSPSVLIPAL 306 (417)
Q Consensus 240 ~~~~~l~~L~~ll~~~--~~~v~~~a~~~l---~~l~~~~~-~~~---~~~~~~~~~~~L~~----~l~~~~~~v~~~a~ 306 (417)
....++..+...+.++ +..++..++..+ .....+.. ... ..++..++.+.+-. --...+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1234455555566655 556666665555 33333322 222 22333344443310 01123568899999
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH--HHHHCCCHHHHH-HHhccCC
Q 014864 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ--AVIEANIIGPLV-ALLENAE 383 (417)
Q Consensus 307 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~i~~L~-~~l~~~~ 383 (417)
.+||.|+...+.... -+.+++..|+.-|..+ .++++...-.+|+.++......-. ..........+. ....+..
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEV 472 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence 999999998875431 2346788899999777 899999888888888752111000 000001111111 1222345
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 014864 384 FDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 384 ~~v~~~a~~~L~nl~~~~~ 402 (417)
..+|..|+.-...+....+
T Consensus 473 ~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 473 RSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 6677777777777666544
No 288
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=87.01 E-value=36 Score=34.28 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=61.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 197 (417)
|+.|..+-..+- +.++..++..+..+..+.|++-. ..+..++.-|.+++..+...|.+.|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 333333333333 67788888888888777676644 344567777777888888888888888887777554432
Q ss_pred HhcCCHHHHHHHhcC-CCchhHHHHHHHHHhhhhc
Q 014864 198 LSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 198 ~~~g~i~~L~~ll~~-~~~~~~~~~a~~~l~~l~~ 231 (417)
+..+.+++.. +.+.....+++.+|..+..
T Consensus 380 -----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 -----IDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred -----HHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 3344444422 2233344445555554443
No 289
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.93 E-value=19 Score=33.05 Aligned_cols=217 Identities=18% Similarity=0.112 Sum_probs=107.4
Q ss_pred HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (417)
Q Consensus 113 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (417)
+...++..|..++....++......+.+|..-...- ..-+...++..+.+-+.+..+.+|..-+..++......+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 344457777777776555666666666666544321 0011124556667777776666898888888887751111
Q ss_pred HHHHHHhcCCHHHHHHHhcC---CCchhHH---HHHHHHHhhhhcCC-CCCCh------hhh---hchHHHHHHhhcC-C
Q 014864 193 CRDLVLSQGGLVPLLAQLNG---QPKLSML---RNATWTLSNFCRGK-PQPPF------DQV---SPALPALAHLIHS-N 255 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~~---~~~~~~~---~~a~~~l~~l~~~~-~~~~~------~~~---~~~l~~L~~ll~~-~ 255 (417)
....-.-..+++.|++.+.. ++-+..+ ..++.++..++... +.... ... .+.+-.--+++.. .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 11111222366777777731 2211111 11111111111111 00000 000 0000000012222 3
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 014864 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL 333 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 333 (417)
+++-....+.++..+..+.......-....+-..++.++.++ .+.+|..|+..+..+....+.. +...++..+-
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 344444555566555544332211111223567788888888 7999999999999999888764 2233455555
Q ss_pred Hhhc
Q 014864 334 NLLS 337 (417)
Q Consensus 334 ~ll~ 337 (417)
.++.
T Consensus 251 ~~l~ 254 (339)
T PF12074_consen 251 KWLS 254 (339)
T ss_pred HHHH
Confidence 5554
No 290
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.88 E-value=9 Score=29.63 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=57.7
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchh-HHHHHHHHHhhhhcC
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRG 232 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~a~~~l~~l~~~ 232 (417)
++..|-+-|.++++.++..|+.+|-.+..+ ++.+...+...+++..|..++....+.. ++..++..+..-...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 566677778889999999999999998866 4568888888889999999996555444 888888777766654
No 291
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.66 E-value=14 Score=35.75 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=75.6
Q ss_pred hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (417)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (417)
.|++..++..+.+.+ ..++..++.+|.-+...-.+ ....+-+|.+..|..-+-+..+.++..|+.+|+.+-.....-.
T Consensus 90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 566888888888888 89999999999988775333 3344445788888887777889999999999999874433211
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~ 224 (417)
.. ....|+.++..+++.++++.++.
T Consensus 168 n~-----~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 168 NR-----IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HH-----HHHHHHHHHhcCcHHHHHHHHHH
Confidence 11 34467777777788888887654
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.37 E-value=3.2 Score=32.33 Aligned_cols=74 Identities=7% Similarity=-0.013 Sum_probs=58.0
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~~l~~ 146 (417)
+++..+.+.|++.++.++..|+..|..++.....+...++...+++..|+.+++. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999888776545566678888899999999963 1237888888877776654
No 293
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.30 E-value=3.7 Score=34.90 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhhhhcCCCC-------CChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHH-HHHcCC
Q 014864 216 LSMLRNATWTLSNFCRGKPQ-------PPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQA-VIEAGV 286 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~-------~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~ 286 (417)
.+-++.++.+|+.||-.+.+ +++..+...+..|++++... ++-.++-++..|.+|+.++...... ..+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 45689999999999987643 44556677888888888655 7778899999999999988776544 355578
Q ss_pred hHHHHhhcCCCC
Q 014864 287 FPRLAEFLMHPS 298 (417)
Q Consensus 287 ~~~L~~~l~~~~ 298 (417)
+..|+.++...+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 888888886543
No 294
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.77 E-value=23 Score=30.75 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=56.4
Q ss_pred cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHH
Q 014864 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQ 362 (417)
Q Consensus 284 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~ 362 (417)
...++.++.+++.++. ..-..+|......-..+-+.+-.|-++.|..++.++. +.-+|..|+.+|..++...+..
T Consensus 72 ~~A~~~li~l~~~~~~----~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDD----FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred hhhHHHHHHHHcCCcc----hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3467888998876653 2222333333222222223334466777778887663 5688999999999999866665
Q ss_pred HHHHHHCCCHHHHHHH-hccCCHH
Q 014864 363 IQAVIEANIIGPLVAL-LENAEFD 385 (417)
Q Consensus 363 ~~~l~~~~~i~~L~~~-l~~~~~~ 385 (417)
+..+++ .+..++.. +...+..
T Consensus 148 Re~vi~--~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 148 REEVIQ--YFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHHH--HHHHHHHHHhccCchH
Confidence 665554 34444444 4433333
No 295
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.68 E-value=16 Score=28.77 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHH
Q 014864 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIG 373 (417)
Q Consensus 295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~ 373 (417)
..+++......|..+..= +.... .++..|.+-+.+. ++.++..|...|-.++.++.. ....+.+.+++.
T Consensus 14 ~~~dw~~il~icD~I~~~----~~~~k-----~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 14 TSENWGLILDVCDKVKSD----ENGAK-----DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCcCHHHHHHHHHHHhcC----CccHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 345666666666665432 11111 2456678888888 999999999999999885544 445666788999
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHhhCC
Q 014864 374 PLVALLEN-AEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 374 ~L~~~l~~-~~~~v~~~a~~~L~nl~~~ 400 (417)
.|..++.. .++.|+..++..+...+..
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 99999987 7899999999988887543
No 296
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=85.45 E-value=19 Score=29.50 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=58.1
Q ss_pred hhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014864 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319 (417)
Q Consensus 241 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 319 (417)
....+|.++.-|...+...+--|...+..|... ..+.+-.++.. ++..|...|.+.++++...++.+|..++..++..
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 367889999888877766666666677666655 44444444433 6677778888999999999999999997666544
Q ss_pred HH
Q 014864 320 TQ 321 (417)
Q Consensus 320 ~~ 321 (417)
-.
T Consensus 115 G~ 116 (183)
T PF10274_consen 115 GE 116 (183)
T ss_pred hH
Confidence 33
No 297
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.22 E-value=4.1 Score=41.65 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh
Q 014864 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI 252 (417)
Q Consensus 173 ~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll 252 (417)
+.++.+++-+|+++|-...... ...+|.|++-|..++...++.+.+-+++.+|... -......+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 5788899999999985544332 2368899999988888888888888888888752 134467889999999
Q ss_pred cCCChHHHHHHHHHHHHhccCChHHHHHHHHc-C-ChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-G-VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 253 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~-~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
.++++-|+..++-.|.+|.... +++- | ++-+++--+-+.+++++.-|=.+++.+.....
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999986432 1221 1 22333333445677899999999998875443
No 298
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=73 Score=35.89 Aligned_cols=231 Identities=13% Similarity=0.108 Sum_probs=129.1
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCCh
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF 238 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~ 238 (417)
.+..++..+..+++..+-.+..+++.++...+.. . .-.+....++.-+.+..|+-.+..-.-++..+-++. .....
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 3445555666688888888888888888543321 1 112245566666756667777766667777777765 33444
Q ss_pred hhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc---
Q 014864 239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--- 314 (417)
Q Consensus 239 ~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~--- 314 (417)
......+..+..+-.++ ++.|+..++.++..+.+.........+.. .+..+..+|-+..+ .......+++....
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCc-chhhhhhhhccccccch
Confidence 55566677777777665 56999999999999886554433333332 33444444443221 22222222222222
Q ss_pred --------------CChH--HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH
Q 014864 315 --------------GDDM--QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL 378 (417)
Q Consensus 315 --------------~~~~--~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~ 378 (417)
++.. .+. .+..-.+-...-++.++ ++.++.++..++-++---.|.+.. -.-+++.|..+
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSL 1106 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHH
Confidence 2211 111 11111122222334444 888999999999888653332211 11356677777
Q ss_pred hccCCHHHHHHHHHHHHHhhCC
Q 014864 379 LENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 379 l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
+.+...-.|.....++.-++.+
T Consensus 1107 l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred hcchhhhhhhhHHhhhhHHhHH
Confidence 7766655656666666555544
No 299
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=84.69 E-value=44 Score=33.11 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHH---hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVI---DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 207 (417)
.++++-|+.+|+-+..+.+..-..+. .+..+..++..+. .++..+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 68888899999888876543332222 2234455555554 5577788899999999888 5566665543 33333
Q ss_pred HHhc---CCCchhHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHH
Q 014864 208 AQLN---GQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 281 (417)
Q Consensus 208 ~ll~---~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (417)
..+. ..++..++....-...|++-.- ...+.....-+...+..++.. +|-+.....+.+|++|+..+....+..
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A 713 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLA 713 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3321 2233444444333333433221 111111112222223333322 244456667888889887776554433
Q ss_pred HHcCChHHHHhhcC
Q 014864 282 IEAGVFPRLAEFLM 295 (417)
Q Consensus 282 ~~~~~~~~L~~~l~ 295 (417)
... -+..++.-++
T Consensus 714 ~~~-~v~sia~~~~ 726 (745)
T KOG0301|consen 714 KNR-SVDSIAKKLK 726 (745)
T ss_pred Hhc-CHHHHHHHHH
Confidence 322 3455555544
No 300
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=83.70 E-value=11 Score=43.26 Aligned_cols=269 Identities=13% Similarity=0.147 Sum_probs=135.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH----H--hCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchH
Q 014864 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV----I--DHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRC 193 (417)
Q Consensus 121 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i----~--~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (417)
+..++...+ ++++..+....+.+...... .... + ....+..+..+- .++++.++......+. ..+
T Consensus 486 ~~~~~~~~~-~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~ 557 (2341)
T KOG0891|consen 486 VDSYLEADD-SEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERF 557 (2341)
T ss_pred HHHHHhccc-HHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cch
Confidence 444555566 78888887766666554222 0000 0 112233333322 2355555544444333 111
Q ss_pred HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhc-hHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 272 (417)
-......+.+..++..+ .+..-.++..+.-.+.+++..+|......... .+..+..+-.+.-.-+......-+..+..
T Consensus 558 ~~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~ 636 (2341)
T KOG0891|consen 558 DAQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELII 636 (2341)
T ss_pred hhhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence 11122222333344444 55566778888888888888765221111111 11112222222222222222222222222
Q ss_pred CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
.....+...+ ...+..++..+.+++..+...++.+++.++...........+ ..++.+.+.+.+..+..-+..+.+++
T Consensus 637 ~~~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l 714 (2341)
T KOG0891|consen 637 SSPVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKAL 714 (2341)
T ss_pred HHHHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHh
Confidence 2222222112 235567777788888888899999999998766533333334 45566666665553566778888999
Q ss_pred HHHhcCCHHHHHHHH-HCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCC
Q 014864 353 SNITAGNREQIQAVI-EANIIGPLVALLENA-EFDIKKEAAWAISNATSG 400 (417)
Q Consensus 353 ~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~ 400 (417)
+++.+...-...... ...++..|++.+... ...++.++...++++...
T Consensus 715 ~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 715 GQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 999874221111111 123445555555443 456778888888766543
No 301
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=83.31 E-value=20 Score=34.12 Aligned_cols=228 Identities=11% Similarity=0.053 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC----CCCChhhhhchHH
Q 014864 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP 246 (417)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~l~ 246 (417)
+|+-+....++++.-+-..-......++.. .+..+....+...++..-.....+++.+.+.. +..........+|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 456666666666665554444344443332 33333333334446776666666666555432 2222345577889
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHhhcCCC-Chh---hHHHHHHHHHHhhcCChHHHH
Q 014864 247 ALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP-SPS---VLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 247 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~~l~~~-~~~---v~~~a~~~L~~l~~~~~~~~~ 321 (417)
.+...|+.+-.+...++...++.|.+... .... . ....|...|-++ -|+ -.-...+.|..+....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~-~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----D-AYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------T-TTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----H-HHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh-
Confidence 99999998878888888888888876544 1111 1 122222222222 121 12344455666554444332
Q ss_pred HHHHc----CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHhc-cCCHHHHHHHHHHHH
Q 014864 322 CVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLE-NAEFDIKKEAAWAIS 395 (417)
Q Consensus 322 ~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~~~L~ 395 (417)
... +++..+-+++.+. . --..+...|..+...-+ +..+..+. .++..++.-|. +...+..+.-+..++
T Consensus 195 --~~~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~ 268 (435)
T PF03378_consen 195 --VANNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLS 268 (435)
T ss_dssp -----S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred --cchhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 222 3344444566655 2 22456777777776433 33333332 35555555555 445666767677777
Q ss_pred HhhCCCCHHHHHHHHh
Q 014864 396 NATSGGTHEQIKYEHT 411 (417)
Q Consensus 396 nl~~~~~~~~~~~l~~ 411 (417)
.++..-+++..-..++
T Consensus 269 ~~~~~~g~~~li~~id 284 (435)
T PF03378_consen 269 LFAIKYGPDFLIQTID 284 (435)
T ss_dssp HHHHHH-HHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHH
Confidence 6666556665555554
No 302
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.29 E-value=75 Score=34.70 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=57.3
Q ss_pred cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 326 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
.+++|.|..-|.+. +..+|..|...+|.+......+.. =-........+.-+.+..++||.+++....++...
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 48899999999999 999999999999999886444332 01224555666677788999999999999998776
No 303
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=82.87 E-value=36 Score=31.58 Aligned_cols=153 Identities=18% Similarity=0.085 Sum_probs=90.0
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc----------CCChHHHHHHHHHHHHhccCC
Q 014864 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------SNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------~~~~~v~~~a~~~l~~l~~~~ 274 (417)
.++..+.+......+..++.++.-|+++............+..|+.+-. .+|..+...++.||+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4455553333455556667777777776533333333444444443321 134578899999999999988
Q ss_pred hHHHHHHHHcCChHHHHhhcCC----CC-hhhHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhcCCC--------
Q 014864 275 NDKIQAVIEAGVFPRLAEFLMH----PS-PSVLIPALRTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGNY-------- 340 (417)
Q Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~----~~-~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~-------- 340 (417)
....+..........+.+.+.. +- ..+...-++.|--+..-. +...+.+.+.++++.+.+++.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 8777777777666666555431 11 123333334443333322 344455667799999999997542
Q ss_pred ------chhHHHHHHHHHHHHhc
Q 014864 341 ------KKSIKKEACWTVSNITA 357 (417)
Q Consensus 341 ------~~~v~~~a~~~L~nl~~ 357 (417)
....-.++..++.|++.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheee
Confidence 11344577788888875
No 304
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.44 E-value=43 Score=32.34 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=91.0
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhC
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIAS 146 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~~l~~ 146 (417)
-+.++.+.+-++|+..+..|+..|+. ++.+.++ +|.|+.++..+- +-.........+..|..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~L-----lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQL-----LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHHH-----HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 35677777778888888888888752 4455554 888888887532 25566677777777777
Q ss_pred CCchhHHHHHhCCChhHHHHhhCC----------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC-Cc
Q 014864 147 GTSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PK 215 (417)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~ll~~----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~ 215 (417)
+..-.....+. ..+|.++.++-+ .+..++..|+..+..++.+-....+. +...++..+.+.+.+. ..
T Consensus 277 Np~i~lepYlh-~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 277 NPNIFLEPYLH-QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP 354 (576)
T ss_pred CCccchhhHHH-HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 53333333332 567777766532 34678999999999888554433233 3444666677766444 24
Q ss_pred hhHHHHHHHHHhhhhc
Q 014864 216 LSMLRNATWTLSNFCR 231 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~ 231 (417)
.....-++..|..|..
T Consensus 355 ~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 355 LSTHYGAIAGLSELGH 370 (576)
T ss_pred chhhhhHHHHHHHhhh
Confidence 4455555555555544
No 305
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.33 E-value=16 Score=26.40 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=52.2
Q ss_pred HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHH
Q 014864 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWAL 183 (417)
Q Consensus 114 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L 183 (417)
....+..|+++.+.+. ...+..++..+..+... +.....+.+-|+...|.++=..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567888999999888 66889999999998885 77888888889999877766656666655444333
No 306
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=82.24 E-value=11 Score=29.37 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=57.2
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chHHHHHHhcCCHHHHHHHhcCCCchh---HHHHHHHHHhhhhcCC
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLS---MLRNATWTLSNFCRGK 233 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~---~~~~a~~~l~~l~~~~ 233 (417)
.++..|-+-|.++++.++..|+.+|-.+..+. +.++..+....++..|.+++....... ++..++..+.......
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 35666777888899999999999999888665 567788878888899999886544433 7888887776666543
No 307
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.97 E-value=35 Score=29.96 Aligned_cols=213 Identities=17% Similarity=0.128 Sum_probs=113.1
Q ss_pred HhhhcCCChHHHHHHHHHHHHhhhCCC--CCcHHH-HH-----------HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 014864 79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEE-VI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI 144 (417)
Q Consensus 79 ~~~l~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~-~~-----------~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l 144 (417)
+.+|.+..+..-..|+..+.+++..-+ ++.... +. -.|+.+.+++=+.++. ....+...|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 456666666666777777776655421 111111 11 1233333333334433 234455555555
Q ss_pred hCCC-------chhHHHHHhCCChhHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCC
Q 014864 145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ 213 (417)
Q Consensus 145 ~~~~-------~~~~~~i~~~g~i~~L~~ll~~~~----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~ 213 (417)
+... ++.+-.+.=.+.+|.++.-+.+++ ......++..|+.+|.... ...+..++..+.+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 5421 112222222245677777777665 2344566688888874322 12344444444333
Q ss_pred C---chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 014864 214 P---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (417)
Q Consensus 214 ~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 290 (417)
. ..+....++..++.-.. |. .....+-.+..+|.+.-+.++..++..|..+....+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2 23444444444443221 21 2245667788899888889999999999988765443322 444578888
Q ss_pred HhhcCCCChhhHHHHHHHHHHhh
Q 014864 291 AEFLMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 291 ~~~l~~~~~~v~~~a~~~L~~l~ 313 (417)
..+++.+.. ..|+.+|-++.
T Consensus 234 lrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 234 LRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHHhCCccH---HHHHHHHHHHH
Confidence 888877653 45555555544
No 308
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=52 Score=31.89 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l 379 (417)
.+...|+..++-++.+.+-..+++ +..+-..+..+ ++.+|+..-.+++-+...+|.. +++..|-+..
T Consensus 619 ~ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~s 685 (881)
T COG5110 619 LIESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSS 685 (881)
T ss_pred HHHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhc
Confidence 444555555666677776555543 34455556666 8899998888888887777742 4677888888
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864 380 ENAEFDIKKEAAWAISNATSGGTHEQIKYE 409 (417)
Q Consensus 380 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l 409 (417)
++++.++..+++.+++-+-.+.....+..+
T Consensus 686 hd~dl~v~~ntIfamGLiGAGT~NaRlaql 715 (881)
T COG5110 686 HDGDLNVIINTIFAMGLIGAGTLNARLAQL 715 (881)
T ss_pred cccchhHHHHHHHHhhccccCcchHHHHHH
Confidence 889999999999999887766544333333
No 309
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=81.77 E-value=19 Score=38.38 Aligned_cols=236 Identities=17% Similarity=0.176 Sum_probs=127.3
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHH--------HhhcCCCCHHHHHHHHHHHHHHh
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV--------EFLLREDYPQLQFEAAWALTNIA 145 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv--------~lL~~~~~~~~~~~a~~~L~~l~ 145 (417)
.++.|++.+-++.++.|.-++..++.++..+....-...++.-++..+. .+....-...++...+|+|..+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 4677888888999999999999999998765333222222222222221 22221112468889999999887
Q ss_pred CCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH--hcCCHHHHHHHhcCCCchhHHHHHH
Q 014864 146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL--SQGGLVPLLAQLNGQPKLSMLRNAT 223 (417)
Q Consensus 146 ~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~a~ 223 (417)
.+..+. .+. ..+..+.+++..++.+++...+..+..... ..++.+. -..+++..+.-+ .+.+.+++..++
T Consensus 158 ~~~~~s--~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 158 KHMDES--LIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA 229 (1549)
T ss_pred HhhhhH--hhH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence 743221 111 346677777777766666555544433221 0111111 001233334444 566778888888
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChH--HHHHHHHHHHHhccCChH--H-HHHHHHcCChHHHHhhcCCCC
Q 014864 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE--VLTDACWALSYLSDGTND--K-IQAVIEAGVFPRLAEFLMHPS 298 (417)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~--~-~~~~~~~~~~~~L~~~l~~~~ 298 (417)
.++.......+......+..++..+...+..-|.- -.......+..++...+. . .+.-...|++|.+...+.+.-
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 87776665543323233333344443333222110 011112223333333211 0 111122488999999999887
Q ss_pred hhhHHHHHHHHHHhhcCCh
Q 014864 299 PSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 299 ~~v~~~a~~~L~~l~~~~~ 317 (417)
..++..++..+..+....+
T Consensus 310 ~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 8888889999888876543
No 310
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.74 E-value=27 Score=28.58 Aligned_cols=118 Identities=8% Similarity=0.028 Sum_probs=72.5
Q ss_pred CChHHHHhhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (417)
Q Consensus 285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (417)
..++.+++-|...+...+--|...+..+... ..+..- .+-..++.++...|++. ++++...++.+|..++..++..-
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil-PvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL-PVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence 3677788888877766777777777777665 333332 33347888899999999 99999999999999965433322
Q ss_pred HHHHH--CCCHHHHHHHhc-----------cCCHHHHHHHHHHHHHhhCCCCHH
Q 014864 364 QAVIE--ANIIGPLVALLE-----------NAEFDIKKEAAWAISNATSGGTHE 404 (417)
Q Consensus 364 ~~l~~--~~~i~~L~~~l~-----------~~~~~v~~~a~~~L~nl~~~~~~~ 404 (417)
..++- ..++|.+--+.+ .....+..-...+|..+-..|.++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 33321 112332221111 122455566666666666655443
No 311
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=81.65 E-value=28 Score=35.81 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=91.6
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
-+..+...+.++++..-...+.++..+..-+.-++.. ...-++.-..-.+..- ..+......+|..++.-+++...
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 3566777777788777777777777775543222221 1111111111112222 45667788899999998887777
Q ss_pred HHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 154 VVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 154 ~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
.+.. .++...++.++-+++.++.+.|...|....... .|.. ++..|++ ..-........+.+..+...
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~e-----~i~~ll~----~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRLE-----AIQALLQ----SNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHHH-----HHHHHHH----HhHHHHHHHHHHHHHHHHhh
Confidence 6665 588899999999999999999999999987532 2222 2333332 22345566777777777765
Q ss_pred C
Q 014864 233 K 233 (417)
Q Consensus 233 ~ 233 (417)
.
T Consensus 587 ~ 587 (727)
T PF12726_consen 587 K 587 (727)
T ss_pred h
Confidence 4
No 312
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.34 E-value=27 Score=37.64 Aligned_cols=276 Identities=16% Similarity=0.110 Sum_probs=136.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH-Hh-CCChhHHHH--hhCCCCHHHHHHHHHHHHHhhCCCchH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV-ID-HGAVPIFVK--LLYSPSDDVREQAVWALGNIAGDSPRC 193 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~-~g~i~~L~~--ll~~~~~~i~~~a~~~L~nl~~~~~~~ 193 (417)
.+.|.......- ..++..++.++.+.+..+......+ .+ .|.+-.... ....+..+++...+.++.++.....+.
T Consensus 798 a~~l~t~~n~vl-~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ 876 (1610)
T KOG1848|consen 798 APELRTRANNVL-ASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEH 876 (1610)
T ss_pred HHHHHHHHHHHH-HHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchh
Confidence 333433333333 3455555555655555432222221 11 133322222 223456677777778887776443221
Q ss_pred HHHHHhcCCHHHHHHHhc---CC---CchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcC-CChHHHHHHHH
Q 014864 194 RDLVLSQGGLVPLLAQLN---GQ---PKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACW 265 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~---~~---~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~ 265 (417)
.-.| -+.+.+++. .. ....+.+.+..++.-++.+. +..+...+.+++..+..+... .|-.+--.|+.
T Consensus 877 ----ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~ 951 (1610)
T KOG1848|consen 877 ----LLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIG 951 (1610)
T ss_pred ----hccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence 1111 222222221 11 24567777777777777766 666667777777777776643 35444444443
Q ss_pred HHHHhc---cC------ChHHHH-------------HHHHcCC----hHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-H
Q 014864 266 ALSYLS---DG------TNDKIQ-------------AVIEAGV----FPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-M 318 (417)
Q Consensus 266 ~l~~l~---~~------~~~~~~-------------~~~~~~~----~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~ 318 (417)
.++.++ .. .+.... .+...++ +..|.++-.+.-++||..|+.++-.+...+. .
T Consensus 952 lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~ 1031 (1610)
T KOG1848|consen 952 LFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSK 1031 (1610)
T ss_pred HHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhccc
Confidence 333332 11 111100 0111111 1222233334446788888888777654322 1
Q ss_pred HHHHHHHcCChHHHHHhhcCCC--------chhH----HHHHHHHHHHHhcCCHHHHHHHHHCC-C---HHHHHH----H
Q 014864 319 QTQCVIEYQALPCLLNLLSGNY--------KKSI----KKEACWTVSNITAGNREQIQAVIEAN-I---IGPLVA----L 378 (417)
Q Consensus 319 ~~~~~~~~~~l~~L~~ll~~~~--------~~~v----~~~a~~~L~nl~~~~~~~~~~l~~~~-~---i~~L~~----~ 378 (417)
......+.-+...++.+|.... ..++ -+..+.+|+-|+.-.+++...+.+.+ + -+.++. +
T Consensus 1032 l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl 1111 (1610)
T KOG1848|consen 1032 LGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRL 1111 (1610)
T ss_pred CChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1112233334556666665211 1223 23567788888876677777666532 2 233333 3
Q ss_pred hccCCHHHHHHHHHHHHHhhC
Q 014864 379 LENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 379 l~~~~~~v~~~a~~~L~nl~~ 399 (417)
..+..+++...|..++..+..
T Consensus 1112 ~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1112 HSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HhcCChHhHHHHHHHHHHHHH
Confidence 346678888888877766544
No 313
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.51 E-value=18 Score=32.21 Aligned_cols=114 Identities=7% Similarity=0.088 Sum_probs=70.7
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhh----c--------CCCchhHHHHHHHHH
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLL----S--------GNYKKSIKKEACWTV 352 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll----~--------~~~~~~v~~~a~~~L 352 (417)
++|.++.++.+.++.++..++.++..+....+... ..+...|..+.+.+.+ . .. ...+-..|.-++
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHHHHHHH
Confidence 68999999999999999999999999997665433 2345566665544443 2 22 456777777777
Q ss_pred HHHhc-----C---CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 353 SNITA-----G---NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 353 ~nl~~-----~---~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
..++. + .......++..|++..+...-+...++++...+..+..++..
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 77743 1 122333344444444433333333466776666666665554
No 314
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=80.12 E-value=16 Score=33.51 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=62.0
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHhCCC
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGT 148 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~~l~~~~ 148 (417)
+..+.+.+.+++...+..|+..|+. ++.... ++|.|+.++...- +-......+..+..|....
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRT------DPGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc------CCCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 4455556666666666666666542 333433 3888888876531 1455555666666676654
Q ss_pred chhHHHHHhCCChhHHHHhhCC----------CCHHHHHHHHHHHHHhhC
Q 014864 149 SEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAG 188 (417)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~ll~~----------~~~~i~~~a~~~L~nl~~ 188 (417)
.-.....+. ..+|.++.++-. .+..+|+.|+.+|+.++.
T Consensus 249 ~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 249 NLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 333333333 367777766622 346889999999999873
No 315
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=79.75 E-value=20 Score=36.29 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=93.4
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014864 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (417)
Q Consensus 244 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 323 (417)
.+.-|+.+|.+.|..+.+++-..+..+.....+. . ++..|+++.-+... ..|+.+|..+ .+...+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--~-----l~~~l~~y~~~t~s---~~~~~il~~~---~~P~~K-- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP--W-----LVNGLVDYYLSTNS---QRALEILVGV---QEPHDK-- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--H-----HHHHHHHHHhhcCc---HHHHHHHHhc---CCccHH--
Confidence 3556788888888888888777666655443221 1 23445554332221 1333344332 111111
Q ss_pred HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCC
Q 014864 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.++..|-..+.. +..|..+...|+.++...|.....+.+..+++.|+.+|.. .+.-+...|+.+|.-|.-...
T Consensus 70 ---~~~~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 70 ---HLFDKLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred ---HHHHHHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 234556666664 4778899999999999888888888999999999999974 467778888888888776654
Q ss_pred HHHHHHHH
Q 014864 403 HEQIKYEH 410 (417)
Q Consensus 403 ~~~~~~l~ 410 (417)
..--.+|-
T Consensus 144 ~~l~~~L~ 151 (668)
T PF04388_consen 144 SSLGPHLP 151 (668)
T ss_pred chhhHHHH
Confidence 33333333
No 316
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=78.69 E-value=37 Score=36.35 Aligned_cols=177 Identities=12% Similarity=0.085 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (417)
..+++.++|+|..+...- ........+..+..++..+..+++.-.+..+.|......+....+.. -+++..+..|.
T Consensus 143 apVre~caq~L~~~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~-~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLN-LVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Confidence 468889999999888763 22334566777888887777777766666665544322222221221 25677788888
Q ss_pred CCChhhHHHHHHHHHHhhcCChH---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-----
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI----- 367 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~----- 367 (417)
+.+..++..|...+.-++..... +....+.+-+...+..+..-. +. .......+..++... +...+.
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~--~s-~~si~~ll~~l~~~~--evl~l~~~~n~ 293 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLS--SS-TASIMHLLDELCIEN--EVLDLFEQQNL 293 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcc--hh-hHHHHHHHHHHhhhH--HHHHHHHHhhh
Confidence 88888988888887666544321 111111222223333332211 00 111112223333221 122222
Q ss_pred HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 368 ~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
+.|++|.+...+.+.-..++..++..+..+....
T Consensus 294 ~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 294 EVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3588899999988877788888888887776653
No 317
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.43 E-value=49 Score=32.33 Aligned_cols=173 Identities=15% Similarity=0.053 Sum_probs=98.8
Q ss_pred CCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc--C---------CChHHHHHHHHHHHHhccCChHHHHHH
Q 014864 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAV 281 (417)
Q Consensus 213 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~--~---------~~~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (417)
+++.++...+-..|..+... -. ...++..|..+.. . .++.++...+..|+.=.. ..-
T Consensus 248 d~~~~V~~~ae~~LKr~~~~--~e----d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS--LE----DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC--CC----CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHh
Confidence 34455666666666555544 11 1334444444443 1 245566665555543110 000
Q ss_pred HHcCChHHHHhhcCCC--ChhhHHHHHHHH---HHhhcCChHHH----HHHHHcCChHHHHH----hhcCCCchhHHHHH
Q 014864 282 IEAGVFPRLAEFLMHP--SPSVLIPALRTV---GNIVTGDDMQT----QCVIEYQALPCLLN----LLSGNYKKSIKKEA 348 (417)
Q Consensus 282 ~~~~~~~~L~~~l~~~--~~~v~~~a~~~L---~~l~~~~~~~~----~~~~~~~~l~~L~~----ll~~~~~~~v~~~a 348 (417)
.-..++..+..-+.+. +..++..++..+ ........... ..++..++.|.+-. --.+. +...|..+
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~-~~~lR~~a 394 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSE-DIELRSLA 394 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcc-cHHHHHHH
Confidence 1112344444455555 567777887777 66665544332 22334455554410 01122 67899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
..+||.++...|.... -+-+++..|++.|..++++++..+-.||+.++..
T Consensus 395 Ye~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9999999987665321 1346788889999888899998888888887664
No 318
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=78.34 E-value=27 Score=26.48 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH-HCCCHHHHHHHhc
Q 014864 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVI-EANIIGPLVALLE 380 (417)
Q Consensus 303 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~-~~~~i~~L~~~l~ 380 (417)
-..+.-|++++..+..... .++..|.+-|++. ++.|+..++.+|-.++. |++.....+. +..+|..+.++-.
T Consensus 19 gy~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred hHHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 3445556666666554443 3467889999988 89999999999999997 6666555555 3445555555443
Q ss_pred cC--------CHHHHHHHHHHHHHhhC
Q 014864 381 NA--------EFDIKKEAAWAISNATS 399 (417)
Q Consensus 381 ~~--------~~~v~~~a~~~L~nl~~ 399 (417)
.. ...||.+|-.++.-+..
T Consensus 93 ~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 93 PPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 22 24688888888776654
No 319
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=78.25 E-value=27 Score=27.26 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=57.2
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcC-----CCchhHHHHHHHHHhhhhcC
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~a~~~l~~l~~~ 232 (417)
.++..+.+-|.++++.++..|+.+|-.+..+ ++.+...+...+++..|++++.. ..+..++..++..+..-+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566777888899999999999999888853 45588888889999999999942 24677888877777666554
No 320
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=77.92 E-value=34 Score=27.62 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHhhhCC-----CCC---cHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC
Q 014864 87 SGVQYECTTQFRKLLSIE-----RSP---PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH 158 (417)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~-----~~~---~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 158 (417)
...+..++..+..++... ..+ ....++...+.+.+.+.+.+.+ +.+-..+++++..+...-....+.-.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele- 113 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELE- 113 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345555666666555432 122 4455677888999999988887 899999999999988632221111111
Q ss_pred CChhHHHH-hhCCCC--HHHHHHHHHHHHHhhCCCchHHHHHHh
Q 014864 159 GAVPIFVK-LLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLS 199 (417)
Q Consensus 159 g~i~~L~~-ll~~~~--~~i~~~a~~~L~nl~~~~~~~~~~~~~ 199 (417)
-.++.++. ++.+++ ..-++.++.++..++.+..-..+....
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 23344444 666533 467888999999999877655554443
No 321
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=90 Score=32.10 Aligned_cols=251 Identities=14% Similarity=0.117 Sum_probs=146.7
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV 155 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 155 (417)
-.+=+.++++....|-.+...+-++.... +.+ .++++ .+-.|......++ ..+|...+++...--. ....+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchhh
Confidence 34445677777778888888888776543 222 23322 3445666666777 6888888887774222 22222
Q ss_pred Hh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC
Q 014864 156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 156 ~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
.. ...+..+.....+.|+.-+..++.+++.+..--| +.+....++..-.++.+.--.+.++.+...++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 21 1334444445566889999999999998764433 334555666655455555556677777777765431
Q ss_pred CCChhhhhchHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-CChhhHHHHHHHHHH
Q 014864 235 QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGN 311 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~v~~~a~~~L~~ 311 (417)
....++.-.+..++...+ +...-..+.+++.|....... ..+......++.. +..+-...-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A------~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA------SRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh------HHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 111233333444554443 344556677777776443221 1234555566543 334444556667777
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
++...-.. -.+-++.+..+++.+....++..+.|.+.+++.
T Consensus 241 Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 76433322 224567788888855467788888888888864
No 322
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=77.21 E-value=18 Score=33.18 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=66.0
Q ss_pred hchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC----------CCChhhHHH
Q 014864 242 SPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----------HPSPSVLIP 304 (417)
Q Consensus 242 ~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~----------~~~~~v~~~ 304 (417)
...+|.++.++... +.......+..+..|..+..-.....+.. ++|.++.++- .+.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~-Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ-LIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH-HHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45667776666432 56667777777777777665444433433 6777776662 234789999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchh-HHHHHHHHHHHH
Q 014864 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKKEACWTVSNI 355 (417)
Q Consensus 305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~nl 355 (417)
|...++.++........ -+...+...+.+.+.++..+. ...-|...|+.+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999854432221 123344545666665542332 355555555554
No 323
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.51 E-value=1e+02 Score=32.08 Aligned_cols=213 Identities=16% Similarity=0.137 Sum_probs=101.2
Q ss_pred HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-----CCCChh--hhhchHHHHHHhhcCC--ChHHHHHH
Q 014864 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-----PQPPFD--QVSPALPALAHLIHSN--DDEVLTDA 263 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-----~~~~~~--~~~~~l~~L~~ll~~~--~~~v~~~a 263 (417)
..+.+.+...++.++.++..+.++.++.++..+|+.+.+.. |.+-.. .....+..|+..+-.+ ........
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~ 261 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSG 261 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHH
Confidence 44556677789999999977778999999999888888773 222111 1244555544433322 12222232
Q ss_pred HHHHHHhccCChHHHHHHHHcC-ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCC
Q 014864 264 CWALSYLSDGTNDKIQAVIEAG-VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGN 339 (417)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~ 339 (417)
+..+..+....-.... .. ....+.+-....++.+....+.++..-.. ...+.+.+. +.++.=...+..+
T Consensus 262 i~vlI~ll~~~r~~~~----~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~---dF~~lL~~~~~~~~l~tt~g~l~pP 334 (838)
T KOG2073|consen 262 IIVLISLLNPRRDTVE----TNSTTTILSQPPSERDPIVLNELLGAMEPRLG---DFVQLLLEPEKLDLLETTYGELEPP 334 (838)
T ss_pred HHHHHHhcCccccccc----ccceeeeecCCccccCccchHHHHHHHHHHHH---HHHHHhcCCccchhhhhhhhccCCC
Confidence 2222222211111000 00 00111111122234444444444432221 111111111 1222222222222
Q ss_pred CchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHH--HHHHHHHHHHHhhC---------CCCHHHHH
Q 014864 340 YKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFD--IKKEAAWAISNATS---------GGTHEQIK 407 (417)
Q Consensus 340 ~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~--v~~~a~~~L~nl~~---------~~~~~~~~ 407 (417)
=...|...|..+.-+.. ++....+.+...+++..+++.+...... +...+-.+|..... ..+.....
T Consensus 335 -LG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~~~~~~~~~s~~~~~v~ 413 (838)
T KOG2073|consen 335 -LGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSDETNNDSNISADNEIVD 413 (838)
T ss_pred -cchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhccccccccCCCchHHHH
Confidence 33566677777777765 4566666677778887777777654322 44444444443333 33444445
Q ss_pred HHHhcC
Q 014864 408 YEHTFC 413 (417)
Q Consensus 408 ~l~~~g 413 (417)
++...+
T Consensus 414 ~~l~~c 419 (838)
T KOG2073|consen 414 HLLQDC 419 (838)
T ss_pred HHHHHh
Confidence 555443
No 324
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.50 E-value=3.3 Score=32.41 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=52.4
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHH---HHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ---LQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~---~~~~a~~~L~~l~~ 146 (417)
+.+..+.+.|.++++.++..|+..+-.++.....+...++....++..|..++.+..... ++..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 456777778888888999999888888876543444555667778888888877554333 77777766665554
No 325
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.28 E-value=7.7 Score=34.19 Aligned_cols=135 Identities=11% Similarity=0.014 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHhccCChHHHHHHHHcC--ChHHHHhhcCCC---ChhhHHHHHHHHHHhhcCChHHH-HHHHHcCC
Q 014864 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAG--VFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQT-QCVIEYQA 328 (417)
Q Consensus 255 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~ 328 (417)
..+..+--++++++|+..+.......+-..+ ++..+.....+. +..++..+...+-|++....... ..-....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3456666788999999877655433222222 223333333332 67788888888888863221111 00011123
Q ss_pred hHHHHH-hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhc-cCCHHHHHH
Q 014864 329 LPCLLN-LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKE 389 (417)
Q Consensus 329 l~~L~~-ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~ 389 (417)
+..+.+ +.....+++....++.++|++....+.........|+-..+-..-. ..+++++.-
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v 264 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEV 264 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHH
Confidence 555666 3333238899999999999999766654443333444444433332 334555443
No 326
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.61 E-value=56 Score=28.71 Aligned_cols=177 Identities=19% Similarity=0.186 Sum_probs=101.9
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhhCC-------CchHHHHHHhcCCHHHHHHHhcCCCc----hhHHHHHHHHHhhhh
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQPK----LSMLRNATWTLSNFC 230 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~~a~~~l~~l~ 230 (417)
+.+.+-+.+ +...+.++..|..++.. +.+.|-.+.-.+.+|.++..+ ++++ ......++..|+.+|
T Consensus 67 ~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 67 PLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHHHHH
Confidence 333444443 33455667777776632 121233444444567777777 3333 245667778888888
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~ 310 (417)
...+.. .+..++....+--..+..+....++..|+.-.. ++. +...+..|+.+|.++.+.++..++.+|.
T Consensus 144 ~~~~~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 144 EAQGLP---NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH------EFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred HhCCCc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh------HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 653322 112222222222222345556666666654221 111 1235677899999988899999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
.+...-+-... ...+++.++.++++++ ...+|..+|-++..
T Consensus 214 ~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 214 VLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 99876553322 5556888999999876 34466666666553
No 327
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.47 E-value=59 Score=30.12 Aligned_cols=133 Identities=12% Similarity=0.149 Sum_probs=89.6
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014864 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (417)
Q Consensus 244 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 323 (417)
.+.-|+..+.+.+..++.+++..+..+....+.....-. ..+++.+..+..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~-~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHL-YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHH-HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 455677788889999999999888877665444333212 2367778888888888899998888877654443332333
Q ss_pred HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHhc
Q 014864 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQAVIEANIIGPLVALLE 380 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~~l~ 380 (417)
.-.=+.+.+...+.+. .+.++.-+...|.-+.... |........ +++.+.+.++
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 3334566777777888 9999999999999998744 433333333 4444444443
No 328
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.83 E-value=1.2e+02 Score=31.98 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHH
Q 014864 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165 (417)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 165 (417)
.+.++..+...+.++.-.+ ....+ ..+|.|++-|.-.+...++...+-+++.+|..- + .+++ -.+|.+.
T Consensus 944 ~~~vra~~vvTlakmcLah-~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y---T-am~d-~YiP~I~ 1012 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAH-DRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY---T-AMTD-RYIPMIA 1012 (1529)
T ss_pred chHHHHHHHHHHHHHHhhh-hHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH---H-HHHH-HhhHHHH
Confidence 3456777788888886543 23222 248999998886665677777777888887641 1 1222 5799999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC--HHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG--LVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 166 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~--i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
..|.++++-++.+++-.|.+|.... .+.-.|. +..++.++ +.+++++..+=..++.+....
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999996432 2223333 33444444 567888999988888888764
No 329
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.72 E-value=28 Score=26.36 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 351 ~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
=|.+++..++.... .++..|.+-|++.++.|+..++.+|..++..|+.++...+.++
T Consensus 24 Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 24 EIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 34455545444433 3566788888888899999999999999999987766665544
No 330
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=74.14 E-value=68 Score=29.02 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCC-----------ChhHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHG-----------AVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRC 193 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-----------~i~~L~~ll~------~~~~~i~~~a~~~L~nl~~~~~~~ 193 (417)
-++|..|+.|+.....++++.+..+++.- ....|+..|- +.|+--..-|+.+|..+..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 68999999999999998888887776431 1112333332 123323334555555555555554
Q ss_pred HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-----CCChHHHHHHHHHHH
Q 014864 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALS 268 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~l~ 268 (417)
++.... + .......... ....++.+..+|. ..|+.++.--+..|+
T Consensus 132 Ke~al~-------------------------V-~~~~~~~ge~----~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALR-------------------------V-TEGDESSGEE----PVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHc-------------------------c-cCCCCCCCCC----cccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 443322 1 0000000111 1223444444432 336666666666666
Q ss_pred HhccCChHHHHHHHHcC-ChHHHHhhcCC---CChhhHHHHHHHHHHhhc
Q 014864 269 YLSDGTNDKIQAVIEAG-VFPRLAEFLMH---PSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 269 ~l~~~~~~~~~~~~~~~-~~~~L~~~l~~---~~~~v~~~a~~~L~~l~~ 314 (417)
.-..+++..+..+++.+ .++.|+..... .+.-++--++..||-+..
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 66667777777777764 68888887543 245556566666776654
No 331
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.68 E-value=53 Score=27.55 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=83.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHH-HHHHHHhhcCChHHHHH
Q 014864 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPA-LRTVGNIVTGDDMQTQC 322 (417)
Q Consensus 245 l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a-~~~L~~l~~~~~~~~~~ 322 (417)
...+..+..++..+.+.-++..+.......+.. .++.+-.++..- ++.+.... ..+++.+....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 344555666666676666666665433221111 234455555543 45555554 34445543221
Q ss_pred HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
....+.+..++.++ ++-+|+.++.++........ .. .++..+...+.++++-+++...|+|..+... +
T Consensus 119 ---~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~ 186 (213)
T PF08713_consen 119 ---PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKK-D 186 (213)
T ss_dssp ---GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--
T ss_pred ---HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-C
Confidence 34567788999998 88888888877766655411 11 2334444556788899999999999999887 5
Q ss_pred HHHHHHHHh
Q 014864 403 HEQIKYEHT 411 (417)
Q Consensus 403 ~~~~~~l~~ 411 (417)
++....+++
T Consensus 187 ~~~v~~~l~ 195 (213)
T PF08713_consen 187 PDEVLEFLQ 195 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 332
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=71.65 E-value=23 Score=26.15 Aligned_cols=81 Identities=14% Similarity=0.060 Sum_probs=56.9
Q ss_pred CChHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCC
Q 014864 327 QALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 327 ~~l~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~~~ 401 (417)
|++..+-..+.+.. +..-|+.+..+++.+..-....+. .+.|.+..+|.. ..++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666666552 335688899999888763233322 345666666654 36789999999999999988
Q ss_pred CHHHHHHHHhc
Q 014864 402 THEQIKYEHTF 412 (417)
Q Consensus 402 ~~~~~~~l~~~ 412 (417)
+.+++..+++.
T Consensus 86 ~~~~l~~ll~~ 96 (107)
T smart00802 86 KEEELGPLLDQ 96 (107)
T ss_pred CHHHHHHHHHH
Confidence 88888887764
No 333
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=71.57 E-value=22 Score=27.92 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=52.8
Q ss_pred chHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014864 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC 322 (417)
Q Consensus 243 ~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 322 (417)
.-...|+.+|..+...-....+..|.+=..-..+. ..-++++++..++.-=.....--...|+..||.+..|..
T Consensus 22 ~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN----- 95 (154)
T PF11791_consen 22 EQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN----- 95 (154)
T ss_dssp HHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-----
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-----
Confidence 33455666776654333334444454433211111 123445455554443222222235678888887776554
Q ss_pred HHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 323 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
+..|+.+|.+. +..+...|+.+|.+..-
T Consensus 96 ------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ------VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ------HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ------HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67799999888 89999999999998765
No 334
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.43 E-value=51 Score=30.51 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=83.4
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHH
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQ 364 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~ 364 (417)
-+.-|+..+.+.+..++..|+..|-.+....+.... ..-..+++.+..+..+. +..+|.....++-++.. ..++...
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 366788889999999999999999888876554333 22345677788888887 88999998888888665 2333322
Q ss_pred HHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHH
Q 014864 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 405 (417)
Q Consensus 365 ~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 405 (417)
.++. =+++.+...|.+-.+.++..++..|.-++....+..
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 2221 245556666777788999999999988887764433
No 335
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=71.42 E-value=20 Score=27.95 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC---------hHHHHHHH----H
Q 014864 218 MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVI----E 283 (417)
Q Consensus 218 ~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~---------~~~~~~~~----~ 283 (417)
++...+.+++.++... |..- ...++.++.++.++ +......+..|..+.+.- ..+...+. +
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4556666777776654 3221 24556666666553 444444444444443210 11111111 1
Q ss_pred --cCChHHHHhhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 284 --AGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 284 --~~~~~~L~~~l~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
..+++.+...+.... ..+...++.+++.....-+ ...+.+.++++.+..++.++ .++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 123444444444332 7788899999999887433 44567778999999999644 6688887765
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.86 E-value=38 Score=34.81 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=94.6
Q ss_pred CcHHHHHHhCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHhCCCchhHHHHHhC--------CChhHHHHhhCC-
Q 014864 107 PPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIASGTSEHTKVVIDH--------GAVPIFVKLLYS- 170 (417)
Q Consensus 107 ~~~~~~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--------g~i~~L~~ll~~- 170 (417)
+....+...+.+..++++...+. ..++...|+.+|+-+..- |.....+..+ .+|..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 34555677777888888776542 135667788888777765 4443333321 244444443322
Q ss_pred ---CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCH--HHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 014864 171 ---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (417)
Q Consensus 171 ---~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 245 (417)
-+++++..|+.+|-|.....|.++...+..=+- ..=-..+...+......+.+.-.++-.+. ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 379999999999999988887776543211000 00000111222233444444444444444 4678
Q ss_pred HHHHHhhcCCC-----hHHHHHHHHHHHHhccCCh
Q 014864 246 PALAHLIHSND-----DEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 246 ~~L~~ll~~~~-----~~v~~~a~~~l~~l~~~~~ 275 (417)
..|+++|+... ..++.-||.+|.-|+..+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 88888887543 4688889999999987764
No 337
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=69.76 E-value=40 Score=24.45 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=50.3
Q ss_pred HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (417)
Q Consensus 325 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L 394 (417)
...++..|+.+++.+ +.....++...+..++.. +...+.+.+-|....|-++-..-++..+..+-..+
T Consensus 28 ~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 346788899999998 777889999999998775 55566777888888766665556666665554444
No 338
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=69.04 E-value=11 Score=26.57 Aligned_cols=66 Identities=9% Similarity=0.190 Sum_probs=44.2
Q ss_pred HhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----cCCChHHHHHHHHHH
Q 014864 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----HSNDDEVLTDACWAL 267 (417)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll----~~~~~~v~~~a~~~l 267 (417)
.+...+.|+..++....+.+++...+.++.++..... ..+..+.+.+...+ .++++.+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3445788899988677899999999999999988643 23344455554444 344566666555544
No 339
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.27 E-value=11 Score=29.45 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q 014864 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-HEQIKYEH 410 (417)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~l~ 410 (417)
-+..|+..|+.+..|. =+..|+++|.+++..+...|+.+|.+....-+ .+.+..+.
T Consensus 79 s~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDaf~dv~~~a 135 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLLVYDAFNDVAELA 135 (154)
T ss_dssp -HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--TTCCHHHHHHHHH
T ss_pred CHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Confidence 3456666666665541 27789999999999999999999999766543 23334433
No 340
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=67.25 E-value=1.4e+02 Score=29.83 Aligned_cols=177 Identities=12% Similarity=-0.003 Sum_probs=83.6
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH---hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhh--
Q 014864 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVL---SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-- 241 (417)
Q Consensus 167 ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-- 241 (417)
.+..-..+++-.|+-+|.-+..+...+-..+. -+..+..++..+. .++..+-.++.+|.|+..+. .......
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~-~g~~~~~s~ 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNP-AGRELFMSR 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCH-HHHHHHHHH
Confidence 33344566777777777777665554333222 1123344444442 45677788889999998873 2221111
Q ss_pred -hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC---CC--ChhhHHHHHHHHHHhhcC
Q 014864 242 -SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---HP--SPSVLIPALRTVGNIVTG 315 (417)
Q Consensus 242 -~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~---~~--~~~v~~~a~~~L~~l~~~ 315 (417)
...+..+...-..++..++........|++.. ..+.-.+.+..+.+...+. .+ +.+..-.++.+||+++..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 11222222222223344444433333332210 0000001223333333322 22 223455677889999988
Q ss_pred ChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHH
Q 014864 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350 (417)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 350 (417)
.+...+ +.+.--+..+..-+++.......+..+.
T Consensus 706 ~~~~~~-~A~~~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 706 DASVIQ-LAKNRSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred cHHHHH-HHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence 876655 3344455666666654423333344333
No 341
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.11 E-value=9.4 Score=34.42 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCchhHHHHHhCCChhHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchHHHHHH
Q 014864 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (417)
Q Consensus 137 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 198 (417)
..+.+++++...++..+.+.+.|+++.++.-. ++.+|-+++..+.++.++..++.++++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 56789999999899999999999999887644 457899999999999999998887777654
No 342
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=66.30 E-value=1e+02 Score=27.98 Aligned_cols=149 Identities=12% Similarity=0.109 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHh-hc----C----CChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864 218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL-IH----S----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (417)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~l-l~----~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 288 (417)
+++.++..+.......+.. .......+|.++.. |. + .++++..-....+..+-..-.+....+.+. ++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HHH
Confidence 4444455444444432211 22335566665552 21 1 256666655555655554333344555554 667
Q ss_pred HHHhhcCCC---ChhhHHHHHHHHHHhhcCChHHHHHHH---HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc----C
Q 014864 289 RLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYKKSIKKEACWTVSNITA----G 358 (417)
Q Consensus 289 ~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~----~ 358 (417)
..+.++..+ -|+.+..-...|..+...+....-.+- -..++..+.-.++|. +.++...++.++..+.. .
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHhc
Confidence 777777654 378888877777777654332211110 013456777788888 99999999999888875 2
Q ss_pred CHHHHHHHHHC
Q 014864 359 NREQIQAVIEA 369 (417)
Q Consensus 359 ~~~~~~~l~~~ 369 (417)
+++....+...
T Consensus 200 ~~~~~~~F~~~ 210 (319)
T PF08767_consen 200 NPEFANQFYQQ 210 (319)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45555555543
No 343
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=65.88 E-value=7.2 Score=28.65 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHH
Q 014864 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177 (417)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~ 177 (417)
....+..|..++.. |+.-..+++.|+++.|+.+|.++|.+|..
T Consensus 63 Ld~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34566677777775 78888899999999999999998877653
No 344
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=64.85 E-value=48 Score=26.12 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=82.0
Q ss_pred CchhHHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCC--CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864 148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD--SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (417)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~ 224 (417)
+++.-+.+.+...+..+++++.. ....++.+.+..++-+... ++..--.+...+.+..++..-.+-.++++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 46677778888999999999986 6677888888887776632 22233456677788888876656668889888888
Q ss_pred HHhhhhcCCCCCC--hhhh--hchHHH---HHHhhcCCChHHHHHHHHHHHHh
Q 014864 225 TLSNFCRGKPQPP--FDQV--SPALPA---LAHLIHSNDDEVLTDACWALSYL 270 (417)
Q Consensus 225 ~l~~l~~~~~~~~--~~~~--~~~l~~---L~~ll~~~~~~v~~~a~~~l~~l 270 (417)
.|..++..-.... +... .+..|. -+++..++|.-++..+-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888876432211 1111 233444 45566778887777665555443
No 345
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.38 E-value=1.2e+02 Score=27.87 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=97.2
Q ss_pred CCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc--CChHHH
Q 014864 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GTNDKI 278 (417)
Q Consensus 201 g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~--~~~~~~ 278 (417)
.++..+..++.++.++......+.++..=+..- .......++..+.+-+.+..+.++..-+.+++.... .+...
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~- 97 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS- 97 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH-
Confidence 356778888877788887777777666444332 112225667777788877777777776666666654 11111
Q ss_pred HHHHHcCChHHHHhhcC----CCChhh----HHHHHHHHHHhhcCChHHHHH--H----HHcCChHHHH---HhhcC-CC
Q 014864 279 QAVIEAGVFPRLAEFLM----HPSPSV----LIPALRTVGNIVTGDDMQTQC--V----IEYQALPCLL---NLLSG-NY 340 (417)
Q Consensus 279 ~~~~~~~~~~~L~~~l~----~~~~~v----~~~a~~~L~~l~~~~~~~~~~--~----~~~~~l~~L~---~ll~~-~~ 340 (417)
..+. ..+++.|+..++ ++-+.. ...|.-.+. +.......... . +..+-=|.++ ++++. .
T Consensus 98 ~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~- 174 (339)
T PF12074_consen 98 LKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA- 174 (339)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC-
Confidence 1122 236666776663 332221 122222222 21111111110 0 0000000000 11211 1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCC
Q 014864 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~ 402 (417)
+++-..-.+.++..+..+.+.....-........++.++-+. .+++|+.|..++..+.....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 333333444445444443222111111123566778888777 89999999999999888643
No 346
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=64.11 E-value=40 Score=24.83 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=56.9
Q ss_pred CChHHHHHhhcC---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCC
Q 014864 327 QALPCLLNLLSG---NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 327 ~~l~~L~~ll~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~~~ 401 (417)
|++..+-..+.+ ..+...|+.+...++.+..-....+. .+.|.+..+|.. ..++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455556666665 33667889999999999873333332 345666666654 34589999999999999988
Q ss_pred CHHHHHHHHhc
Q 014864 402 THEQIKYEHTF 412 (417)
Q Consensus 402 ~~~~~~~l~~~ 412 (417)
+.+.+..+++.
T Consensus 86 ~~~~l~~ll~~ 96 (107)
T PF08064_consen 86 DEEDLGPLLDQ 96 (107)
T ss_pred CHHHHHHHHHH
Confidence 88888777653
No 347
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=64.11 E-value=1.2e+02 Score=29.38 Aligned_cols=256 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC----------chhHHHHHhCCChhHHHHhhCC-----CCHHHHHHH
Q 014864 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT----------SEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQA 179 (417)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~----------~~~~~~i~~~g~i~~L~~ll~~-----~~~~i~~~a 179 (417)
+.+|..+.+.++.+....+|..++|.|+.+--.+ |.....+-+...|...+.++-. ++.---...
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Q ss_pred HHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHH
Q 014864 180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259 (417)
Q Consensus 180 ~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 259 (417)
--++.-|+..++.++ .---+--..|-.++.-+..++++..++.....=+..........-.-+.|.++.-+...-...
T Consensus 176 kvvl~~ia~vgeS~q--yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~tk~~ 253 (589)
T PF11229_consen 176 KVVLKPIATVGESYQ--YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVNTKKY 253 (589)
T ss_pred HHHHHHhhhcCCCCC--CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHHHHHH
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhh-
Q 014864 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLL- 336 (417)
Q Consensus 260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll- 336 (417)
....+.....-. ++++++.+++.-.+..+-..-...++++...++..|.. +...+...+.... +.....++.+|
T Consensus 254 L~~Sl~~wmkhV--sedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsq-AMKlP~P~~h~Ws~Lc~ttekIF~lLP 330 (589)
T PF11229_consen 254 LFESLSLWMKHV--SEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQ-AMKLPSPAQHCWSLLCETTEKIFDLLP 330 (589)
T ss_pred HHHHHHHHHhhC--CHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHHHHhCc
Q ss_pred ---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Q 014864 337 ---SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV 376 (417)
Q Consensus 337 ---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 376 (417)
+.. +-+.-...+.+|+.++...-+.+..+-+.++-....
T Consensus 331 n~i~~~-eveLYi~vAkCLSEMtd~eidrItqitK~nieKa~F 372 (589)
T PF11229_consen 331 NKIQRN-EVELYIGVAKCLSEMTDTEIDRITQITKDNIEKAIF 372 (589)
T ss_pred ccccHH-HHHHHHHHHHHHhhcCHHHHHHHHHhhhccchhhhh
No 348
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.40 E-value=13 Score=29.03 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (417)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 309 (417)
.++...++.++......-+ ...+...++++.+..++.+++ .+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 6777788888888766433 345666778888888885443 577777664
No 349
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=63.12 E-value=1.2e+02 Score=28.06 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=81.0
Q ss_pred HHHHHcCChHHHHhhcCCC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-hcCCC----chhHHHHHHHHH
Q 014864 279 QAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNY----KKSIKKEACWTV 352 (417)
Q Consensus 279 ~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~----~~~v~~~a~~~L 352 (417)
+.+.+..++..|..+-..+ .+.++..+++.+.++....+.. .+....+..++.++ +.... ...+.++-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 3456667778887776654 4678888888888887655433 12233455556666 43221 234566666666
Q ss_pred HHHhc---CCHHHHHHHHHC--------------------------CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC--
Q 014864 353 SNITA---GNREQIQAVIEA--------------------------NIIGPLVALLENAEFDIKKEAAWAISNATSGG-- 401 (417)
Q Consensus 353 ~nl~~---~~~~~~~~l~~~--------------------------~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~-- 401 (417)
..+|. .+|.....+++. .++..|+.+++++ -++-..|..+|--++...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66664 566655555532 2467777777765 567777777777777666
Q ss_pred CHHHHHHHHhc
Q 014864 402 THEQIKYEHTF 412 (417)
Q Consensus 402 ~~~~~~~l~~~ 412 (417)
++.-..++++.
T Consensus 160 ~~~~~~~i~~~ 170 (353)
T PF10257_consen 160 DPALAQYIVEH 170 (353)
T ss_pred CcHHHHHHHHc
Confidence 55556666663
No 350
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.05 E-value=11 Score=27.71 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHH
Q 014864 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389 (417)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 389 (417)
.+....++.++. .|+....+++.|+++.|+.+|.+.+.++...
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 355566666665 4788888999999999999999998877543
No 351
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=62.83 E-value=65 Score=31.17 Aligned_cols=84 Identities=23% Similarity=0.163 Sum_probs=57.0
Q ss_pred hhHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-------------chHHHHHHhcCCHHHHHHHhcCCCc
Q 014864 150 EHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS-------------PRCRDLVLSQGGLVPLLAQLNGQPK 215 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~-------------~~~~~~~~~~g~i~~L~~ll~~~~~ 215 (417)
...+.+.+.+.|+.|+.+|. +.++.++..|+.+|..|..-+ ...-..+.....+..|+..+.....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 34455566799999999997 467888999998887775321 2233445566677788887754344
Q ss_pred hhHHHHHHHHHhhhhcCC
Q 014864 216 LSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~ 233 (417)
.....+++.++..|.+..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 666777777777776543
No 352
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.78 E-value=1.9e+02 Score=29.81 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=44.7
Q ss_pred HHcCChHHHHHhhcCCCchhHH-HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH-hc--cCCHHHHHHHHHHHHHhhC
Q 014864 324 IEYQALPCLLNLLSGNYKKSIK-KEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LE--NAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~-~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~-l~--~~~~~v~~~a~~~L~nl~~ 399 (417)
.+...+..+..-+.-. |.+.| +.||-.+.-++.....++..++.. .+..+++- .+ +.+++-+..|.+....++.
T Consensus 358 FED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 358 FEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred hccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 3445667777777666 55554 566678888887655555444432 23333332 22 3356667777777777776
Q ss_pred CC
Q 014864 400 GG 401 (417)
Q Consensus 400 ~~ 401 (417)
.+
T Consensus 436 k~ 437 (960)
T KOG1992|consen 436 KG 437 (960)
T ss_pred hc
Confidence 64
No 353
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.68 E-value=41 Score=26.29 Aligned_cols=74 Identities=7% Similarity=-0.025 Sum_probs=51.8
Q ss_pred cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHH-HHHhhcCCC--CHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR-FVEFLLRED--YPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~-Lv~lL~~~~--~~~~~~~a~~~L~~l~~ 146 (417)
+.+..+.+.|.+ .++.++..|+..+..++.........++...+++.. |+.++.... +..++..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 456677777764 578888888888887776654555666777788886 888886321 24777777777766654
No 354
>PLN03205 ATR interacting protein; Provisional
Probab=62.46 E-value=1.2e+02 Score=28.14 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=89.8
Q ss_pred hhchHHHHHHhhcCCChHHHHHHHHHHHHhcc---CChHHHHHHHHcCChHH---HHhh-cCCCChhhHHHHHHHHHHhh
Q 014864 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPR---LAEF-LMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 241 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~---L~~~-l~~~~~~v~~~a~~~L~~l~ 313 (417)
+...+..|+.+..-++..+...+++.|..+.. ++..+.+.-.+.+++.. +.+. ..+....++..|+.++.-|.
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 34556666666666666666666665554432 22222222223333322 2222 12456778889998887777
Q ss_pred cCChHH--HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH------------H-----------
Q 014864 314 TGDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI------------E----------- 368 (417)
Q Consensus 314 ~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~------------~----------- 368 (417)
..++.. +..+...-+++.+..+|+.+.-..|+++|...|--+.. +|.....+. +
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~ 479 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEA 479 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHH
Confidence 655533 33344446677788888766566888888765543321 111111111 0
Q ss_pred -CCCHHHHHHHhcc-----CCHHHHHHHHHHHHHhhCCCC
Q 014864 369 -ANIIGPLVALLEN-----AEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 369 -~~~i~~L~~~l~~-----~~~~v~~~a~~~L~nl~~~~~ 402 (417)
..++.-|.+++.. .+-++++.|+..|.-++..|.
T Consensus 480 fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 480 FGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 0134455555543 256888999999988888763
No 355
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=62.13 E-value=16 Score=19.40 Aligned_cols=13 Identities=15% Similarity=0.532 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHH
Q 014864 343 SIKKEACWTVSNI 355 (417)
Q Consensus 343 ~v~~~a~~~L~nl 355 (417)
.+|.+|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5899999999998
No 356
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=61.91 E-value=53 Score=24.43 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=47.6
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc-----CCCCHHHHHHHHHHHHHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-----REDYPQLQFEAAWALTNI 144 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~~~~~~a~~~L~~l 144 (417)
.+..+.+.|.+.++..+..|+..+..++...+.+...++....++..++.+.. ......++..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45677777888899999999999998887654555666666666666655311 111367777777666543
No 357
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.89 E-value=88 Score=34.51 Aligned_cols=206 Identities=15% Similarity=0.080 Sum_probs=119.7
Q ss_pred hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHH-
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWT- 225 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~- 225 (417)
+.+...++.|....++.-+++.++.++..+.|++.-.-.+-........+.-.+..++.+.. +++++.+.....-.
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 33446778899999999999999999999988876665443321122222223444444442 22333333222222
Q ss_pred --HhhhhcCCCCCCh-----------hhhhchHHHHHHhhcCCChHH---HHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 014864 226 --LSNFCRGKPQPPF-----------DQVSPALPALAHLIHSNDDEV---LTDACWALSYLSDGTNDKIQAVIEAGVFPR 289 (417)
Q Consensus 226 --l~~l~~~~~~~~~-----------~~~~~~l~~L~~ll~~~~~~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 289 (417)
...++..+..... ...-..+|.+-.++.+..++- +......+....... ...+.....+.+..
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~-~D~ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSC-PDYQLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCc-hhhhHHhhcCcceE
Confidence 2233333211100 111345666777776654443 333333333333333 34456677778888
Q ss_pred HHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHH-HHHHHHHHh
Q 014864 290 LAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKE-ACWTVSNIT 356 (417)
Q Consensus 290 L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~-a~~~L~nl~ 356 (417)
++....++ +...+...+.+|++-+.-+......+-..|+...+..++.++. ++..++. ...++.++-
T Consensus 1589 ~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1589 LLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLW 1659 (1758)
T ss_pred eehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHH
Confidence 88888775 4455567788888888777777777778899999999998874 3444444 344455543
No 358
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=61.81 E-value=28 Score=23.36 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=44.8
Q ss_pred HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (417)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 288 (417)
+.+|+.+.|-.. |.........+...+..-+..-++....+++|.++.+-.-+.+.++.+.+..++.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 455666666644 3333334455666676666666788999999999999877777776666554443
No 359
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=61.58 E-value=5.8 Score=33.43 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=36.3
Q ss_pred chHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcc
Q 014864 9 ADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL 53 (417)
Q Consensus 9 ~~~~~~~~k~~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~ 53 (417)
...|...||+-.+..|.|.||++...++.|.+|-+...+.|+...
T Consensus 23 ~hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~ 67 (325)
T KOG3132|consen 23 SHPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAV 67 (325)
T ss_pred cCchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcc
Confidence 457899999955556777777777999999999999999997654
No 360
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=61.56 E-value=1.1e+02 Score=29.63 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=67.0
Q ss_pred CChHHHHhhcCCCChhhHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--
Q 014864 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-- 359 (417)
Q Consensus 285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-- 359 (417)
++++.+++.+..+ .+..-.++.++ +. ......+.+.+.++++.|+.+|....++.++..|+.+|+.|..-+
T Consensus 21 ~~v~~llkHI~~~--~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHIDTP--AIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcCCc--HHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 5566666666433 23334444444 11 122344445578999999999986668889999999988886421
Q ss_pred -----------HHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCC
Q 014864 360 -----------REQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 360 -----------~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~ 400 (417)
..-...+.....+..|++.+-. ........++.++..+...
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 2234455566677777776642 2234445555555555543
No 361
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=61.19 E-value=68 Score=33.08 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-HHHHHHHHh
Q 014864 341 KKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-HEQIKYEHT 411 (417)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~l~~ 411 (417)
-..+....+.+|..++...+++...++ +.+....++.++-+++.++...|...|.......+ .+.+..+.+
T Consensus 494 ~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 494 LGQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 345667788899999988899888888 47889999999999999999999999999886532 345555554
No 362
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=60.76 E-value=27 Score=24.54 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=44.4
Q ss_pred HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC---HHHHHHHhccCCHHHHHHHHHHHH
Q 014864 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI---IGPLVALLENAEFDIKKEAAWAIS 395 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~---i~~L~~~l~~~~~~v~~~a~~~L~ 395 (417)
.+..++.++..++.+..+.++|.....++.++.....+.+ ..|. +..+-....+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----HhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3445677888887666588999999999999987655443 3342 333333334556677777666553
No 363
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=60.65 E-value=4.7 Score=21.12 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhc
Q 014864 344 IKKEACWTVSNITA 357 (417)
Q Consensus 344 v~~~a~~~L~nl~~ 357 (417)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999999854
No 364
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=60.21 E-value=1e+02 Score=25.80 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQA-VWALGNIAGDSPRCRD 195 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a-~~~L~nl~~~~~~~~~ 195 (417)
...+..++.++. .+.+..|+.++......... ..++.+-.++.. ++..+.+.. ..+++.+....+
T Consensus 53 ~~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~---- 119 (213)
T PF08713_consen 53 YELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP---- 119 (213)
T ss_dssp HHHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG----
T ss_pred HHHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH----
Confidence 344555677777 78888888887654321111 134455555554 567676665 455555532211
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
...+.+..-+ .++++-.++.++-++...... ......+..+...+.+++.-|+..+.|+|..++..++
T Consensus 120 -----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 120 -----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp -----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred -----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 1233444555 777888888887666555544 2234556667777788889999999999999998888
Q ss_pred HHHHHHHHc
Q 014864 276 DKIQAVIEA 284 (417)
Q Consensus 276 ~~~~~~~~~ 284 (417)
+.....+..
T Consensus 188 ~~v~~~l~~ 196 (213)
T PF08713_consen 188 DEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655554
No 365
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.20 E-value=1.7e+02 Score=28.48 Aligned_cols=132 Identities=16% Similarity=0.113 Sum_probs=80.2
Q ss_pred CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC--------CChHHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014864 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (417)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~--------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (417)
.++..+..|+..|.. + ..+...+|.++.++.. .|-....+.+..+..|.++..-..+..+..
T Consensus 219 ~~~~~r~eAL~sL~T---D------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~- 288 (576)
T KOG2549|consen 219 SDEPLRQEALQSLET---D------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQ- 288 (576)
T ss_pred CCHHHHHHHHHhhcc---C------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHH-
Confidence 455555555544432 1 1234556666666532 355677777777777777665433333333
Q ss_pred ChHHHHhhcC----------CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHH
Q 014864 286 VFPRLAEFLM----------HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSN 354 (417)
Q Consensus 286 ~~~~L~~~l~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~n 354 (417)
++|.++.++- ++.+.+|.-|...++.++......... +...+...+.+.+.+.. ......-+...|..
T Consensus 289 L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 289 LVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 6777776653 234779999999999999776655553 55567777777776652 34455555555555
Q ss_pred Hh
Q 014864 355 IT 356 (417)
Q Consensus 355 l~ 356 (417)
+.
T Consensus 368 lg 369 (576)
T KOG2549|consen 368 LG 369 (576)
T ss_pred hh
Confidence 53
No 366
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=59.98 E-value=1.2e+02 Score=27.35 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=63.0
Q ss_pred cCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChH-HHH-HHHHcCChHHHHHhhcCCC--chhHHHHHHHHHHHHhc
Q 014864 284 AGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDM-QTQ-CVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITA 357 (417)
Q Consensus 284 ~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~-~~~-~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~L~nl~~ 357 (417)
.|.+..++..+... +...+-.-++++-.+.++.+. ..+ .+.+.|+++.++.-+-++. +..+...+.-.||-+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 47788888887654 456788888999999988876 333 5667899999988876552 23688899999999999
Q ss_pred CCHHHHHHH
Q 014864 358 GNREQIQAV 366 (417)
Q Consensus 358 ~~~~~~~~l 366 (417)
++....+.+
T Consensus 174 ~n~~~f~~l 182 (303)
T PF12463_consen 174 FNRDAFQRL 182 (303)
T ss_pred CCHHHHHHH
Confidence 887765544
No 367
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=58.93 E-value=1.6e+02 Score=27.61 Aligned_cols=84 Identities=18% Similarity=0.065 Sum_probs=53.7
Q ss_pred chhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
+...+..++...+-.|+.+.++.|+.-++..-.+|.++.+.-..+|..+. .+.-..+++.+.....-.-....+..++.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHHH
Confidence 45566677788899999999999999999999999888765554554432 22334445555333222333444555555
Q ss_pred hhcCC
Q 014864 229 FCRGK 233 (417)
Q Consensus 229 l~~~~ 233 (417)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 55443
No 368
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=57.30 E-value=1.5e+02 Score=26.92 Aligned_cols=176 Identities=10% Similarity=0.075 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC--------CCchhHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 014864 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245 (417)
Q Consensus 174 ~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 245 (417)
.++...+..+.......+... . +....+++|+..+.. ..++++.......+..+-..-..........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~-~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPE-E-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HH-H-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHH-H-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 455666666666665444322 2 344477887774421 124566665555566655543333344456777
Q ss_pred HHHHHhhcCC---ChHHHHHHHHHHHHhccCC--------hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 246 PALAHLIHSN---DDEVLTDACWALSYLSDGT--------NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 246 ~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~--------~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
...+.++..+ -|+.+..-...|..+.... ++... .++..++..++|++.++...++.++..+..
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 7788888654 3777777666666665432 22222 256778888999999999999999888764
Q ss_pred C----ChHHHHHHHHcC---ChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 315 G----DDMQTQCVIEYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 315 ~----~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
. +++....+.+.- ++..++..+.++.+...-+.-+.+|.++.
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 3 333344444432 34444555555434444455556666654
No 369
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=57.09 E-value=1.9e+02 Score=27.83 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH
Q 014864 87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166 (417)
Q Consensus 87 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 166 (417)
...+..|+++|..+++.-..+....+. -+.|+..|++.. ..-|..|+-++...+.........-.-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 456788899999887764344443332 226889999887 677778888888887753322111101123456666
Q ss_pred hhCC
Q 014864 167 LLYS 170 (417)
Q Consensus 167 ll~~ 170 (417)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 6663
No 370
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=54.89 E-value=91 Score=28.85 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH-HHHHHcCChHHH
Q 014864 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCL 332 (417)
Q Consensus 254 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L 332 (417)
.++..+.-++|--+.+=..+.. .++..+.+-|.+.++.|...|+..++.++.++.... ..+-...+..-|
T Consensus 23 ~enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred cccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 3456666666655554322211 367889999999999999999999999998776543 334455777788
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 333 LNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 333 ~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
..++.+...+.|++....++.+.+.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHH
Confidence 8888844388888888888877765
No 371
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=53.78 E-value=1.6e+02 Score=26.00 Aligned_cols=189 Identities=16% Similarity=0.196 Sum_probs=96.2
Q ss_pred hccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
.++.+..|...|..+|+..+ ...+.+... .++..+.+|.|+..=. + +.+-..++..|.+++- |-
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~--P~ 74 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW--PI 74 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC--CH
Confidence 45677888888888777665 333333322 1445566776666533 3 7889999999999986 22
Q ss_pred hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc----------CCCchhHHH
Q 014864 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----------GQPKLSMLR 220 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----------~~~~~~~~~ 220 (417)
..- . +-.| .+..-+.........+. .++..+...+++..++..+. ...+..+.+
T Consensus 75 ~~~--~--~~~~--------~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~ 138 (266)
T PF04821_consen 75 ELL--V--ESQP--------KDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIE 138 (266)
T ss_pred HHh--c--cCCC--------CChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHH
Confidence 110 0 0000 11111111111111111 24445555555555555441 112456777
Q ss_pred HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC-h
Q 014864 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-P 299 (417)
Q Consensus 221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~ 299 (417)
.++..+.|+..-++......... .+...+.. .+..+.+.|+...|+.+.++.+ .
T Consensus 139 lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d~--------------li~~l~~~~v~~lLL~l~s~~~~~ 193 (266)
T PF04821_consen 139 LVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHDQ--------------LIWALFESGVLDLLLTLASSPQES 193 (266)
T ss_pred HHHHHHHHHhcCCCCcccccccc-----------hhHHHHHH--------------HHHHHHHcCHHHHHHHHHhCcccc
Confidence 78888888877642222111000 12222222 2334455677888888877662 2
Q ss_pred hhHHHHHHHHHHhhcCC
Q 014864 300 SVLIPALRTVGNIVTGD 316 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~ 316 (417)
......+.++..+..+.
T Consensus 194 ~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 194 DFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred chhhHHHHHHHHHHcCC
Confidence 33335555555555444
No 372
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.74 E-value=65 Score=33.53 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=69.0
Q ss_pred hchHHHHHHhhcCCChHHHHHHHHHHHHh----ccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 242 SPALPALAHLIHSNDDEVLTDACWALSYL----SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l----~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
..++.....+|.+.+..++..++.++... +.+++... .++.. .-+.++..+..+++-+...|+.+|-+++....
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~Ll-Plvhq-~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLL-PLVHQ-TWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHh-HHHHh-hhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 45566667788888999999998888763 34444333 33433 56889999999999999999999999998777
Q ss_pred HHHHHHHHcCChHHHHHhhcC
Q 014864 318 MQTQCVIEYQALPCLLNLLSG 338 (417)
Q Consensus 318 ~~~~~~~~~~~l~~L~~ll~~ 338 (417)
+....-+-..++|.+-.++++
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 655544445677777766653
No 373
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=52.73 E-value=2.2e+02 Score=27.35 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhCCCch-HHHHHHhcCCHH-HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHH
Q 014864 174 DVREQAVWALGNIAGDSPR-CRDLVLSQGGLV-PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ-VSPALPALAH 250 (417)
Q Consensus 174 ~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~-~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~l~~L~~ 250 (417)
..|..|+.+||.++..-+. .... ... .|+..| .+....-+..++-++...+.......... .....+.|..
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4567788899988755321 1111 223 466677 66666666666667777766542111111 3344556666
Q ss_pred hhcCC
Q 014864 251 LIHSN 255 (417)
Q Consensus 251 ll~~~ 255 (417)
+|..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 66633
No 374
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=52.47 E-value=55 Score=27.04 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=52.7
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864 330 PCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407 (417)
Q Consensus 330 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 407 (417)
+.+..+..++ +.-+|+.++.++...... ..+ .+++.+-.++.++++-|++.+.|+|..+... .++.+.
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKKETDFD--------LLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVI 177 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 6788899998 898998888777776543 222 2344444555667899999999999999988 566665
Q ss_pred HHHhc
Q 014864 408 YEHTF 412 (417)
Q Consensus 408 ~l~~~ 412 (417)
.+++.
T Consensus 178 ~~l~~ 182 (197)
T cd06561 178 AFLEK 182 (197)
T ss_pred HHHHH
Confidence 55543
No 375
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=51.70 E-value=78 Score=29.24 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHH
Q 014864 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIG 373 (417)
Q Consensus 295 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~ 373 (417)
...+|.+...+|.-+++=..+.. .++..+.+-|.+. ++.|.-.|+..+..+..++.. .+..+....+..
T Consensus 22 T~enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred ccccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 44567777777666654332222 3466788889998 999999999999999986554 344555778889
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhhCC
Q 014864 374 PLVALLE-NAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 374 ~L~~~l~-~~~~~v~~~a~~~L~nl~~~ 400 (417)
.|..++. ..+++|++.....+.+.+..
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 9999998 67889998888888877653
No 376
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.50 E-value=89 Score=30.03 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=69.0
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHcCCh
Q 014864 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ-CVIEYQAL 329 (417)
Q Consensus 251 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l 329 (417)
.|..+|..+....|..|..--.+.. .++..|.+.+.+.++.++..|+..|-.++.++..... .+.+.+++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455676666666665543322222 2466788888888889999999988888877776655 56677899
Q ss_pred HHHHHhhcCC-CchhHHHHHHHHHHHHh
Q 014864 330 PCLLNLLSGN-YKKSIKKEACWTVSNIT 356 (417)
Q Consensus 330 ~~L~~ll~~~-~~~~v~~~a~~~L~nl~ 356 (417)
+-++.+.+.. .+..||..++..|-.-.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 9888888776 57788888877765543
No 377
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=51.37 E-value=1.9e+02 Score=26.23 Aligned_cols=159 Identities=11% Similarity=0.104 Sum_probs=98.0
Q ss_pred hchHHHHHHhh-cCC---ChHHHHHHHHHHHHhccCChHHHHHHHHc--------C---ChHHHHhhcC------CCChh
Q 014864 242 SPALPALAHLI-HSN---DDEVLTDACWALSYLSDGTNDKIQAVIEA--------G---VFPRLAEFLM------HPSPS 300 (417)
Q Consensus 242 ~~~l~~L~~ll-~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--------~---~~~~L~~~l~------~~~~~ 300 (417)
.+++..|+.++ ... .-+++..|+.++.....++++....+++. . ....|+..|- +.++.
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY 112 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence 34455555444 222 45788889999988888777766556654 0 1112444433 22443
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHH------------cCChHHHHHhhcC----CCchhHHHHHHHHHHHHhcCCHHHHH
Q 014864 301 VLIPALRTVGNIVTGDDMQTQCVIE------------YQALPCLLNLLSG----NYKKSIKKEACWTVSNITAGNREQIQ 364 (417)
Q Consensus 301 v~~~a~~~L~~l~~~~~~~~~~~~~------------~~~l~~L~~ll~~----~~~~~v~~~a~~~L~nl~~~~~~~~~ 364 (417)
-.-.|+.++..+..+++.....++. ...++.+..+|.. ..+++++..-...|+-...+++....
T Consensus 113 ~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~ 192 (312)
T PF04869_consen 113 RCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 3446888899999888877665542 1234455555544 33677887777888888889999999
Q ss_pred HHHHC-CCHHHHHHHhc---cCCHHHHHHHHHHHHHhhCC
Q 014864 365 AVIEA-NIIGPLVALLE---NAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 365 ~l~~~-~~i~~L~~~l~---~~~~~v~~~a~~~L~nl~~~ 400 (417)
.+.+. ..++.|+.... +.+.-|+--++..|+-+...
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 88865 47999999753 23567777777777776654
No 378
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.31 E-value=72 Score=33.22 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=66.3
Q ss_pred CHHHHHHHhcCCCchhHHHHHHHHHhhhh---cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014864 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFC---RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278 (417)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 278 (417)
++..-..++ .+.+..++..++.+++.-. ...++.-...+....|.++..+..+|+-+...|+.++.+++....+..
T Consensus 804 Il~r~~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 804 ILGRGIHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 344445555 7778888888888776432 233444555668889999999999999999999999999998877654
Q ss_pred HHHHHcCChHHHHhhcC
Q 014864 279 QAVIEAGVFPRLAEFLM 295 (417)
Q Consensus 279 ~~~~~~~~~~~L~~~l~ 295 (417)
..-+-..++|.+-.++.
T Consensus 883 ~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 43333457777765554
No 379
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.06 E-value=4.5e+02 Score=29.29 Aligned_cols=255 Identities=12% Similarity=0.130 Sum_probs=124.2
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHH----HHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF----VEFLLREDYPQLQFEAAWALTNIASGTS 149 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L----v~lL~~~~~~~~~~~a~~~L~~l~~~~~ 149 (417)
.+..+++.|..-|+..+..|+..+..+....+.+ .. .|++|.+ .++..+++ ..+|...-.++..+...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e---~~--~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTE---EL--KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccch---HH--hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999999997543221 11 2234333 34555666 8999999999988876422
Q ss_pred hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CHHHHHHHhc-CC-------------
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN-GQ------------- 213 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~-~~------------- 213 (417)
........ ..++.....-.+.+..+...|...+....... ..+......+ +...+.+.+. .+
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~e-k~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEE-KDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcChh-hhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 22122222 23333333333445555555555555543321 1222211111 1112222210 00
Q ss_pred ----CchhHHHHHHHHHhhhhcCC-CCCChh----hhhch--HHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014864 214 ----PKLSMLRNATWTLSNFCRGK-PQPPFD----QVSPA--LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (417)
Q Consensus 214 ----~~~~~~~~a~~~l~~l~~~~-~~~~~~----~~~~~--l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (417)
....+...++-++..+.... +..... ..... -..+-+++.+..+.+......++..++..-....-.-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~ 273 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESE 273 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhh
Confidence 01234445555555554322 111111 11111 23355667778888888888888888765443311111
Q ss_pred HcCChHHHHhhcCCCChhhHHHHHHHHHHh-hcCChHHHHHH--HHcCChHHHHHhhc
Q 014864 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNI-VTGDDMQTQCV--IEYQALPCLLNLLS 337 (417)
Q Consensus 283 ~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l-~~~~~~~~~~~--~~~~~l~~L~~ll~ 337 (417)
..-+-+.+.....+.+ .+-.....++... ....+.....- ...+++|.+-++++
T Consensus 274 ~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 274 KNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 1112233334444444 3333333333322 22222222111 34577787777777
No 380
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.17 E-value=6.1e+02 Score=31.47 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=76.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC------ch--hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhh
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------SE--HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~------~~--~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~ 187 (417)
-.++.|++.++..+ +.+......++..+.... ++ .+..+. .+.++.++++..++..--+...+..|..+.
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~-~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMF-EYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchH-HHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 35778888888776 666666555555543311 10 111111 133444555555444444444444454454
Q ss_pred CCCchHHHHHHhcCCHHHHHHHhcCCC------chhHHHHHHHHHhhhhcCC---CCCChhhhhchHHHHHHhhcCCChH
Q 014864 188 GDSPRCRDLVLSQGGLVPLLAQLNGQP------KLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDDE 258 (417)
Q Consensus 188 ~~~~~~~~~~~~~g~i~~L~~ll~~~~------~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~ 258 (417)
.+.+..--.-....++.++...+.+.. ........+.-+...+... +........+.+..++.-|.+++..
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 444311011112234555555553221 1112222222222112112 2222233466777788888888889
Q ss_pred HHHHHHHHHHHhccCC
Q 014864 259 VLTDACWALSYLSDGT 274 (417)
Q Consensus 259 v~~~a~~~l~~l~~~~ 274 (417)
|+..+..+|.+++...
T Consensus 1142 VR~~~~~~L~~i~~~s 1157 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELS 1157 (3550)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999988888887544
No 381
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.85 E-value=1.2e+02 Score=27.69 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhCC--ChhHHHHhhCCC---CHHHHHHHHHHHHHhhCCCchHHHHHH
Q 014864 132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYSP---SDDVREQAVWALGNIAGDSPRCRDLVL 198 (417)
Q Consensus 132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~~~---~~~i~~~a~~~L~nl~~~~~~~~~~~~ 198 (417)
.+|..|+.++..+.. .+.....++..+ .+..|++++..+ ...++..|+.+|..++.+...+.+.+.
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 456666666666554 356666677666 889999999753 467999999999999987776655443
No 382
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.49 E-value=31 Score=31.32 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--cCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 014864 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL--SGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (417)
Q Consensus 305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (417)
..+.|+++|...++..+.+-+.|+++.++.-. .+. +|-+++....++.++..++.++.+.+-
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 67799999999988888888889999887764 344 889999999999999987776655443
No 383
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=44.45 E-value=1.2e+02 Score=25.00 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=51.8
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 014864 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (417)
Q Consensus 288 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (417)
+.+...+.+++.-++..++.++........ ... .+++.+-.++.+. +..|++...|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 678888888988888888777766554411 111 2344455555656 889999999999999988777655554
Q ss_pred H
Q 014864 368 E 368 (417)
Q Consensus 368 ~ 368 (417)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 3
No 384
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=44.26 E-value=1.3e+02 Score=22.47 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=42.2
Q ss_pred ChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-hcCCCchhH-HHHHHHHHHHHhc
Q 014864 286 VFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKSI-KKEACWTVSNITA 357 (417)
Q Consensus 286 ~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~v-~~~a~~~L~nl~~ 357 (417)
++|.+...|. +..++.+..+..+++.++...+-... ++..+++- +++. ...- .+.+..+|..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~------~l~~l~~~i~~~~-~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE------VLNALMESILKNW-TQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH------HHHHHHHHHHhcc-ccchhHHHHHHHHHHHHH
Confidence 5677888888 66789999999999999876552222 22333332 3333 2222 4788888888875
No 385
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.34 E-value=57 Score=31.32 Aligned_cols=71 Identities=11% Similarity=-0.020 Sum_probs=54.6
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-CCHHHHHHHHHHHHH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTN 143 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~~ 143 (417)
+.+..|.+.+++.++.+++.|+..|.-++.......-..+.+.++++.+|...+.. .+..+|..++..|-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 46778888888888899999999888776654344445788999999999999876 446788877766544
No 386
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=42.11 E-value=1.6e+02 Score=23.63 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=50.4
Q ss_pred cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 200 ~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 273 (417)
.|.+...+..+....|..+...++.++.+..... .-........+|.+..+|.+..+.-...++..+..+...
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3445555555545577778877777777555432 234445577899999999999888888888888776643
No 387
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=41.71 E-value=1.4e+02 Score=23.52 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=72.0
Q ss_pred CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh---hhhhchHHHHHHh-hcCCChHHHHHHHH
Q 014864 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHL-IHSNDDEVLTDACW 265 (417)
Q Consensus 190 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~~l~~L~~l-l~~~~~~v~~~a~~ 265 (417)
++.+=+.+.+...+..+++++.+.....++...+.+++-|...-..+.. ....+.+..++.. +.-.|+++...=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 3446677888899999999997766778888888888877765432222 2224445444433 23346777776666
Q ss_pred HHHHhccC-ChHHHHHHHHc--C---ChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 266 ALSYLSDG-TNDKIQAVIEA--G---VFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 266 ~l~~l~~~-~~~~~~~~~~~--~---~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.|..++-. +.+.++.+.+. + ....-+++..+++.-+|.++-.++-|+
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 66655432 22333333332 2 333445666777776666555444443
No 388
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.13 E-value=1.2e+02 Score=33.59 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=102.1
Q ss_pred hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC----ChhhHHH-HHH--HHHHh
Q 014864 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIP-ALR--TVGNI 312 (417)
Q Consensus 240 ~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~----~~~v~~~-a~~--~L~~l 312 (417)
...+.+-.+...+.+.|+.++..++|++...-++-++..+.....-.+-.+..+.++. ++.+... ++. -..++
T Consensus 1436 vs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~~i 1515 (1758)
T KOG1791|consen 1436 VSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFSDI 1515 (1758)
T ss_pred hhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHHHH
Confidence 3356677777788889999999999998877655444212222221233344444332 2222211 111 12344
Q ss_pred hcCChHH----H------HHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCCHHHHHHHhc
Q 014864 313 VTGDDMQ----T------QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLE 380 (417)
Q Consensus 313 ~~~~~~~----~------~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~~l~ 380 (417)
+..+.+. . ...++-..+|.+...+.+. .++.+.+--|.+.-+.. .++..++.+...+.+..++....
T Consensus 1516 ll~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~s 1594 (1758)
T KOG1791|consen 1516 LLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYS 1594 (1758)
T ss_pred HcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhc
Confidence 4333211 1 1223557788888888776 66655566676665543 34556777778888888888887
Q ss_pred cC--CHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCccC
Q 014864 381 NA--EFDIKKEAAWAISNATSGGTHEQIKYEHTFCTIF 416 (417)
Q Consensus 381 ~~--~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i~ 416 (417)
++ +...+.-...+|++-+.. +.....+++..|+|
T Consensus 1595 S~l~~~~S~~LIL~~L~~~Vk~--p~~a~~mle~~Gl~ 1630 (1758)
T KOG1791|consen 1595 SPLASEESKRLILATLQKGVKF--PFYAYEMLEVPGLF 1630 (1758)
T ss_pred chhHHHHHHHHHHHHHHhcCCC--cHHHHHHHhcccHH
Confidence 64 445555666667666653 35557777777765
No 389
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.00 E-value=24 Score=20.88 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=19.9
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHH
Q 014864 370 NIIGPLVALLENAEFDIKKEAAWAI 394 (417)
Q Consensus 370 ~~i~~L~~~l~~~~~~v~~~a~~~L 394 (417)
.+...+...+.++.+.||+.|+.+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4666777888899999999988653
No 390
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=40.72 E-value=1.2e+02 Score=27.70 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=35.6
Q ss_pred CcHHHHHHhC--CHHHHHHhhcCCC--CHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 107 PPIEEVIRSG--VVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 107 ~~~~~~~~~g--~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
.....+...+ ++..|++++..++ ...++..|+.+|..++.........
T Consensus 254 ~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 254 QFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 3344466666 8999999998754 4689999999999999965544443
No 391
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.66 E-value=4.1e+02 Score=26.99 Aligned_cols=292 Identities=13% Similarity=0.096 Sum_probs=142.3
Q ss_pred CHHHHHhhhc-CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
.++.+.+.|. +.|+..+..|-..++.+... ++ .+....-++..++.|--+.-|..+|..+.++.. ..
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~l 73 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PL 73 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CC
Confidence 4566777665 58899999999999887422 12 244555566666667788889999999888543 11
Q ss_pred HHHHhCCChhHHHHhhCCCCH----HHHHHHHHHHHHhhCCCc--hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864 153 KVVIDHGAVPIFVKLLYSPSD----DVREQAVWALGNIAGDSP--RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~----~i~~~a~~~L~nl~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l 226 (417)
.......+-..++.++....| -+....+..++.+..-+- ..++...=.+.+..+.+.+ +..+.+--.-++..|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 111112344566677765433 334444455555542111 0111112223466667777 444444444445555
Q ss_pred hhhhcCC----CCCChhhhhchHHHHHHhhcCC-ChHHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHhhcCC----
Q 014864 227 SNFCRGK----PQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH---- 296 (417)
Q Consensus 227 ~~l~~~~----~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~~l~~---- 296 (417)
..|...- +..+...-. .+..-..++ --++..-+|..|.....-+- +..+.-.-.-++..-..++.-
T Consensus 153 sqLvqemN~~~~~~p~tkHR----kias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiG 228 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHR----KIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIG 228 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHH----HHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccc
Confidence 5554431 111100000 011111111 12344445555555442111 111110001112222222210
Q ss_pred --CC------hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc------CCHHH
Q 014864 297 --PS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA------GNREQ 362 (417)
Q Consensus 297 --~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~------~~~~~ 362 (417)
.| -.++.+ ..-+..+.+...++.++++..+- .+..-+.|..+|..+++ ++++.
T Consensus 229 ss~DEssed~ctVQIP------------TsWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~aeR 295 (1082)
T KOG1410|consen 229 SSTDESSEDLCTVQIP------------TSWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAER 295 (1082)
T ss_pred cccccccccccceecC------------cHHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHHH
Confidence 01 011111 12233455667788899999988 88889999999999985 23443
Q ss_pred HHHHHHCCCHHHHHHHhccC----CHHHHHHHHHHHHHh
Q 014864 363 IQAVIEANIIGPLVALLENA----EFDIKKEAAWAISNA 397 (417)
Q Consensus 363 ~~~l~~~~~i~~L~~~l~~~----~~~v~~~a~~~L~nl 397 (417)
..++- .++.-..+++..+ |+.--.+-|..|..+
T Consensus 296 a~yl~--~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRl 332 (1082)
T KOG1410|consen 296 AKYLQ--HLVEGVKRILENPQGLSDPANYHEFCRLLARL 332 (1082)
T ss_pred HHHHH--HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHH
Confidence 33332 2444445555432 343334444444444
No 392
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=40.47 E-value=1.5e+02 Score=21.96 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=28.7
Q ss_pred ChhhHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhc
Q 014864 298 SPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLS 337 (417)
Q Consensus 298 ~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~ 337 (417)
+..+...++.+|..++.| ..+....+.+..+++.+..++.
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 345667778888888888 5556666777788887777775
No 393
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=40.27 E-value=1.9e+02 Score=23.15 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-hhcCCC-chhHHHHHHHHHHHHhc
Q 014864 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN-LLSGNY-KKSIKKEACWTVSNITA 357 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~-~~~v~~~a~~~L~nl~~ 357 (417)
.+++..+.+.+...+.++++.+...+++++..+...-....+.-+ +-+++.++. ++.++. ...-|..+.-++..++.
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el-e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL-EVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 355556788888888888888999999999999854332222111 123444444 666552 24667778889999987
Q ss_pred CC
Q 014864 358 GN 359 (417)
Q Consensus 358 ~~ 359 (417)
..
T Consensus 147 ~p 148 (168)
T PF12783_consen 147 DP 148 (168)
T ss_pred Ch
Confidence 53
No 394
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=40.02 E-value=76 Score=23.75 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=31.0
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHH
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 198 (417)
+|+.|+.-|.+++++|...|+.+|...|.+. .+...++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788999999999999999999999998777 3444433
No 395
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=40.02 E-value=69 Score=23.98 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=30.1
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q 014864 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHT 411 (417)
Q Consensus 371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 411 (417)
+++.|++.|.+++++|...|..+|...+... ....+++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHH
Confidence 4778888898888899999999998888753 45555544
No 396
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=39.79 E-value=1.5e+02 Score=21.78 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=48.2
Q ss_pred CChHHHHhhcCC----CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhc-C
Q 014864 285 GVFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITA-G 358 (417)
Q Consensus 285 ~~~~~L~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~-~ 358 (417)
|++..+-..+.+ .+...+..++++|+.+..-...... .+.|.+...|++. ..++++..|+.+-..+.. -
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 344444444444 4566788899999998864333332 3455666666543 245888888887777765 3
Q ss_pred CHHHHHHHHH
Q 014864 359 NREQIQAVIE 368 (417)
Q Consensus 359 ~~~~~~~l~~ 368 (417)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 4555555554
No 397
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=39.65 E-value=20 Score=34.08 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=47.8
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 331 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
.+-.+.-+. +++++.+|..+++|++.........+-+..+-..+++.+..+.+++-+.+..++.-+..
T Consensus 332 ~lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 332 ALKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 344444455 99999999999999987644333222234455667788888888898888888877653
No 398
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=37.42 E-value=87 Score=26.26 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 210 (417)
..+...+...|..++.++.++...+.+ .++.++..+.......--.+..++..+..+++.....+.+. .+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 457778889999999998888777775 34433333322222122345667777888877766665544 478888888
Q ss_pred cCCCchhHHHHHHHHHhhhhcC
Q 014864 211 NGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
.... -....+..|..+|..
T Consensus 152 ~~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp ----------------------
T ss_pred HHcC---CChHHHHHHhhhccc
Confidence 4423 112344455555544
No 399
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=35.73 E-value=1.8e+02 Score=21.46 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 014864 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334 (417)
Q Consensus 255 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 334 (417)
+-+.+..-..|++.+.. ... .++..+...+....+.-+.++++.+-.++..............+.+.+..
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 44566666777777652 111 24555666777777778889999999998766544444444444666666
Q ss_pred hhcCCCchhHHHHHHHH
Q 014864 335 LLSGNYKKSIKKEACWT 351 (417)
Q Consensus 335 ll~~~~~~~v~~~a~~~ 351 (417)
..... ++.+|.....+
T Consensus 87 ~~~~~-~~~~r~kl~rl 102 (114)
T cd03562 87 AYEKV-DEKTRKKLERL 102 (114)
T ss_pred HHHhC-CHHHHHHHHHH
Confidence 66655 66666544433
No 400
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=35.57 E-value=1.8e+02 Score=24.41 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l 379 (417)
.+...+++.|..++.++......+.+. ++.++..+... ....--.+..++..+..++++-...+.+. .+..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 567889999999999988766655543 33333333322 11111346667777878777766665553 377777777
Q ss_pred cc
Q 014864 380 EN 381 (417)
Q Consensus 380 ~~ 381 (417)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 65
No 401
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.13 E-value=5e+02 Score=26.41 Aligned_cols=281 Identities=11% Similarity=0.102 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHH----HHHHHHhCCC--chhHHHHHh
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAA----WALTNIASGT--SEHTKVVID 157 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~----~~L~~l~~~~--~~~~~~i~~ 157 (417)
++.+-.+..|..++.++++... +.......++-..+++.+.+.. |...-... ..++.+..-. ..++...+=
T Consensus 50 gs~pYs~mlAst~L~Klvs~~t--~lpl~qrldir~Yilnylat~~-Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F 126 (1082)
T KOG1410|consen 50 GSYPYSQMLASTCLMKLVSRKT--PLPLEQRLDIRNYILNYLATGA-PKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF 126 (1082)
T ss_pred CCCchHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHHhccccccccccchh
Confidence 3557788899999999988753 3333334455677888888755 44433333 3444444321 112222222
Q ss_pred CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC
Q 014864 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235 (417)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~ 235 (417)
-+.+..+.+.++.++.+-...++.+|..+..+-. ......- -...+..-+.++.=-++..-++..|.......-+
T Consensus 127 Rd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~~~p~t---kHRkias~FRD~sL~~vf~laln~L~~~~~~nln 203 (1082)
T KOG1410|consen 127 RDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADGMDPST---KHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLN 203 (1082)
T ss_pred hhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCCCCcch---HHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcc
Confidence 2577888888887777766667777776652210 0000000 0001111111111123334444444444321100
Q ss_pred C--ChhhhhchHHHHHHhhc-----CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864 236 P--PFDQVSPALPALAHLIH-----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (417)
Q Consensus 236 ~--~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~ 308 (417)
. .......++..-.+++. +.-++-.++ ++.. ..+..=...+.+...++.+.++..+-.+..-..|+.+
T Consensus 204 d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed----~ctV-QIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsc 278 (1082)
T KOG1410|consen 204 DRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSED----LCTV-QIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSC 278 (1082)
T ss_pred cHhHhhHHHHHHHHHhhhcccccccccccccccc----ccce-ecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHH
Confidence 0 11111222222222221 110000000 0000 0111112234455567788888888888888889999
Q ss_pred HHHhhc------CChHHHHHHHHcCChHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864 309 VGNIVT------GDDMQTQCVIEYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (417)
Q Consensus 309 L~~l~~------~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l 379 (417)
|..+++ ++.+....+. .++.-...++.+++ ++.--.+-|..|+.+-.+ -+...++.-...|..++++
T Consensus 279 lvqlASvRRsLFN~aeRa~yl~--~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktN--YQL~ELv~v~~Y~e~irLi 354 (1082)
T KOG1410|consen 279 LVQLASVRRSLFNGAERAKYLQ--HLVEGVKRILENPQGLSDPANYHEFCRLLARLKTN--YQLGELVKVECYPEVIRLI 354 (1082)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhh--hhhHhhhccCCcHHHHHHH
Confidence 888874 2233333221 34445555665542 555556667777766432 2333444444444444443
No 402
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=34.72 E-value=3.5e+02 Score=24.45 Aligned_cols=127 Identities=13% Similarity=0.180 Sum_probs=84.1
Q ss_pred HHHHhcCCHHHHHHHhcC----------------------CCchhHHHHHHHHHhhhhcCCCCC----------------
Q 014864 195 DLVLSQGGLVPLLAQLNG----------------------QPKLSMLRNATWTLSNFCRGKPQP---------------- 236 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~----------------------~~~~~~~~~a~~~l~~l~~~~~~~---------------- 236 (417)
..+.+.|.++.|-+++.. +++..++...+..+.++|...+..
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456677777777766621 112246677788888888732110
Q ss_pred ------ChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChH--HHHHHHHcCChHHHHhhcCCCC---hhhHH
Q 014864 237 ------PFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTND--KIQAVIEAGVFPRLAEFLMHPS---PSVLI 303 (417)
Q Consensus 237 ------~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~~~~L~~~l~~~~---~~v~~ 303 (417)
......|.+..++..+..+ +...+...+.|+-....+.+. ....+.+.|+++.++..+-++. ..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 0111245666666666433 566777788888888777655 3346788899999998887653 46888
Q ss_pred HHHHHHHHhhcCChHHHH
Q 014864 304 PALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 304 ~a~~~L~~l~~~~~~~~~ 321 (417)
.....||.+..++.....
T Consensus 163 ~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHHCCCHHHHH
Confidence 899999999998875544
No 403
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.86 E-value=3.1e+02 Score=30.30 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC-------CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-------SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-------~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i 203 (417)
.+++.....++.++....-+.. +. | -+.+.+++. ....++...+..+|.-++.|.-..-..-.-.+.+
T Consensus 856 ~evr~~sl~~l~silet~ge~l---l~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHL---LH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhh---cc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 5677777777777766422221 11 1 222333322 1345677777777777776532211111223356
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhhhhc---CC--CCCChhh-----------------h-hc----hHHHHHHhhcCCC
Q 014864 204 VPLLAQLNGQPKLSMLRNATWTLSNFCR---GK--PQPPFDQ-----------------V-SP----ALPALAHLIHSND 256 (417)
Q Consensus 204 ~~L~~ll~~~~~~~~~~~a~~~l~~l~~---~~--~~~~~~~-----------------~-~~----~l~~L~~ll~~~~ 256 (417)
+.++....+..|..+--.|+..+++++. .+ ....... . ++ .+..|.++..++-
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence 6666666666666655555554444432 21 0000000 0 11 1222333334444
Q ss_pred hHHHHHHHHHHHHhccCChHHH-HHHHHcCChHHHHhhcCCC---------Chhh----HHHHHHHHHHhhcCChHHHHH
Q 014864 257 DEVLTDACWALSYLSDGTNDKI-QAVIEAGVFPRLAEFLMHP---------SPSV----LIPALRTVGNIVTGDDMQTQC 322 (417)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~L~~~l~~~---------~~~v----~~~a~~~L~~l~~~~~~~~~~ 322 (417)
.+|+.-|+.++..+........ ...-+.-+...++++|... ..++ -...+.+|+-|+.-..++...
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5666666666666543221111 1111222334455555521 0112 234566666666555555554
Q ss_pred HHHc--------CChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 323 VIEY--------QALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 323 ~~~~--------~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
+.+. .++..+..+..+. ++++.-.|..++..+.
T Consensus 1091 llnln~f~~vwe~ll~flkrl~s~~-s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDI-SPEISLSAIKALQELL 1131 (1610)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHH
Confidence 4432 2344455555566 7777777776665544
No 404
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=32.34 E-value=5.2e+02 Score=25.81 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh--hhhchHHHH
Q 014864 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPAL 248 (417)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~L 248 (417)
-++.++..|...|+--+..-|. .+....++.+.=..| .+.+..++.....++..|+...|..... .....-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4567777777777766655443 344444555665666 7778999999999999999988766622 224445556
Q ss_pred HHhhcCCChHHHHHHHHHHHHhc
Q 014864 249 AHLIHSNDDEVLTDACWALSYLS 271 (417)
Q Consensus 249 ~~ll~~~~~~v~~~a~~~l~~l~ 271 (417)
+.++..+..-|+..+...+.++.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 67776664448888877777764
No 405
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=32.27 E-value=1.3e+02 Score=22.27 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=44.1
Q ss_pred CCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 014864 116 GVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAG 188 (417)
Q Consensus 116 g~i~~Lv~lL~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~i~~~a~~~L~nl~~ 188 (417)
|++..+.+.+.+.+ +..-+..++.++..+..-.. ..+. .+.|.+..+|.+ ..++++..|+.+...+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g---~~i~--~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG---KHIS--SALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 55666666666544 34567888888777765211 1121 456777777765 567799988888877763
No 406
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.99 E-value=1.3e+02 Score=26.89 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=40.5
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-------HHH-------HHHHHHCCCHHHHHHHhc
Q 014864 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-------REQ-------IQAVIEANIIGPLVALLE 380 (417)
Q Consensus 327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-------~~~-------~~~l~~~~~i~~L~~~l~ 380 (417)
..+..++.-|.+. +...|..|+.+|..++.|. .++ ...+.+.|+++.|+.+|.
T Consensus 60 ~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4566788888888 8889999999999998753 233 334557899999999884
No 407
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.09 E-value=94 Score=27.85 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=41.5
Q ss_pred CChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-------H-------HHHHHHHcCChHHHHHhhc
Q 014864 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-------M-------QTQCVIEYQALPCLLNLLS 337 (417)
Q Consensus 285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-------~-------~~~~~~~~~~l~~L~~ll~ 337 (417)
.++..++.-|.+.+...+..|+++|.-++.|.- . ....+.+.|+++.+..+|+
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 467788889999888899999999998887652 2 2333457899999999885
No 408
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=30.90 E-value=71 Score=19.21 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=11.8
Q ss_pred CCCCCchHHhhh-hhhHHHHHH
Q 014864 17 KVAVDADEGRRR-REDNMVEIR 37 (417)
Q Consensus 17 k~~~~~~~~~~~-r~~~~~~lr 37 (417)
-...|++|+++| |++.-..+|
T Consensus 8 ~pk~DPeE~k~kmR~dvissvr 29 (51)
T PF15178_consen 8 GPKMDPEEMKRKMREDVISSVR 29 (51)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 345788888764 333334443
No 409
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.92 E-value=6.8e+02 Score=26.37 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc----CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHH
Q 014864 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL 248 (417)
Q Consensus 173 ~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L 248 (417)
-...+.++..+-.++.+-...-+ ..++.++.... +..++++...+...++.++..-. .....+...+|.|
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~-e~P~~ln~sl~~L 554 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLG-EHPMYLNPSLPLL 554 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHh-cCCcccCchHHHH
Confidence 45567788888777754332211 13666666553 22378888999888888887632 2224557889999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCC
Q 014864 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 249 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~ 316 (417)
++-|+.+ +....+...|..+|....+...... .+++...-..+... .+..+...++++|-+...-
T Consensus 555 ~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~-d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~ 621 (982)
T KOG2022|consen 555 FQGLHNS--KESEQAISTLKTLCETCPESLDPYA-DQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL 621 (982)
T ss_pred HHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHH-HHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc
Confidence 9988644 3334555567777765544332222 23444444444433 3567888999999887543
No 410
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=29.42 E-value=2.4e+02 Score=21.05 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=44.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 190 (417)
++|.+...|.....++.+..+..+++.++...+=... +++ ..+..++......+. ...++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-VLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-HHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4788888998444489999999999999985432222 221 233333333332222 477888888888443
No 411
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.38 E-value=6.1e+02 Score=25.64 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHhhhcCC
Q 014864 30 EDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSN 85 (417)
Q Consensus 30 ~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~ 85 (417)
.....+.|-+||+|.+..-.- ++ + +++|.++..+.+-
T Consensus 335 ~~~iq~aR~ak~qe~~~~l~~---En---------------~-eVLpqlvdalg~v 371 (896)
T KOG4337|consen 335 SQIIQEARLAKRQEWEAALQY---EN---------------D-EVLPQLVDALGGV 371 (896)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---hh---------------h-hHHHHHHHHhccc
Confidence 356667788888777765431 11 1 6789999999873
No 412
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=29.11 E-value=3.7e+02 Score=23.05 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCCh------------------hhHHHHHHHHHHhhcCChH
Q 014864 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP------------------SVLIPALRTVGNIVTGDDM 318 (417)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~------------------~v~~~a~~~L~~l~~~~~~ 318 (417)
......+|..+..|...+++ ...+.+.++++.+...|..-++ ..-..=...||.++.. +.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG-~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEG-IKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PN 155 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHH-HHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hh
Confidence 44555666677777665443 3445566777777766643211 1122234456777544 44
Q ss_pred HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 319 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
..+.+-+.+++..+..+......+.+. ...+.++=.+.+.+... .|-..|..++..+|..|...|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~---klil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLL---KLILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHH---HHHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 455566789999999999876333322 23455553332222222 2345778888999999999988765
Q ss_pred C
Q 014864 399 S 399 (417)
Q Consensus 399 ~ 399 (417)
.
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 413
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=27.84 E-value=5.3e+02 Score=24.40 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=47.8
Q ss_pred HHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhh
Q 014864 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIA 187 (417)
Q Consensus 109 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~ 187 (417)
.+..++..++-.|+.+..+.+ |.-+...-.+|.++-..-...+..+.. ++=..+..++..... .=....+.+||.+.
T Consensus 170 aK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnGIaELLEIlgSiI 247 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNGIAELLEILGSII 247 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCCHHHHHHHHHHhc
Confidence 455778888999999999988 888888777888876643444443332 344455555544211 11223455666665
Q ss_pred C
Q 014864 188 G 188 (417)
Q Consensus 188 ~ 188 (417)
.
T Consensus 248 n 248 (457)
T KOG2085|consen 248 N 248 (457)
T ss_pred C
Confidence 3
No 414
>PLN03205 ATR interacting protein; Provisional
Probab=27.61 E-value=3.2e+02 Score=25.58 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=68.1
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhh---cCChHHHHHHHHcCChHHHHHhh----cCCCchhHHHHHHHHHHHHhcC
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIV---TGDDMQTQCVIEYQALPCLLNLL----SGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~l~~L~~ll----~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
+++.|+++-.-++..+...+++.|-.+. .++......-++.+++..+--+. .+. ...||-+|.....-|...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~T-EE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRT-EEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccc-hhheeeehhhhhHHhhhc
Confidence 3455666666666666666666664443 23333333344555554322222 133 667888888776666543
Q ss_pred -CH-HHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCC
Q 014864 359 -NR-EQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSG 400 (417)
Q Consensus 359 -~~-~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~ 400 (417)
++ ..+..+....+++.+-.+|+.. -..|+++|+..|.-+...
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC 447 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC 447 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC
Confidence 22 3444555567888888888754 578999999888766553
No 415
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=27.52 E-value=3e+02 Score=21.47 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=52.7
Q ss_pred ChhHHHHhhC-CCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHH-HHHHhcCC--CchhHHHHHHHHHhhhhcCC
Q 014864 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVP-LLAQLNGQ--PKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 160 ~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~-L~~ll~~~--~~~~~~~~a~~~l~~l~~~~ 233 (417)
++..|-+-|. +.++.++..|+.+|-.+..+ +..+...+...+++.. |++++... .+..++..++..+...+...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4555555555 46888888888888887744 3457788888889987 89998533 34577888887777766543
No 416
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=27.28 E-value=1.4e+02 Score=17.66 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864 375 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCT 414 (417)
Q Consensus 375 L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~ 414 (417)
+..++.++-+.++..|-.+| ..++++.+..|++.|-
T Consensus 4 v~~l~~~gG~~vr~AA~~AL----~~G~~~~l~~FL~~G~ 39 (43)
T PF03752_consen 4 VVQLLASGGPAVRAAAQAAL----DAGTPEALREFLETGQ 39 (43)
T ss_pred HHHHHHcCCHHHHHHHHHHH----HhCCHHHHHHHHHHhH
Confidence 45677778889999999888 4568888888888763
No 417
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=26.96 E-value=1.5e+02 Score=17.89 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=20.5
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 289 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
.++++|..+++..+...+.+|+.+...+++..+
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 466777777777777788888888877776554
No 418
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=26.95 E-value=23 Score=30.29 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHhhhHHHHhhhh
Q 014864 28 RREDNMVEIRKNKREESLQKKRR 50 (417)
Q Consensus 28 ~r~~~~~~lrk~~r~~~l~~~r~ 50 (417)
-|+.+..++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 35567889999999999999996
No 419
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=26.48 E-value=4.3e+02 Score=29.87 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH
Q 014864 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291 (417)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 291 (417)
.+.++.++..+......+..... ...-..++..|+..+.+.+..-...|+..|..|+....+..... +.++..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 56667777777766666666531 11225567777777755655445678888888886554433221 23455555
Q ss_pred hhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (417)
Q Consensus 292 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 347 (417)
+.+.+=+..-......+++.++........ -+...+.-.+-+.|.+. ++..++-
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~~ 573 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKRI 573 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHHH
Confidence 666554444445567777777643322111 22223344456666666 6666653
No 420
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=26.38 E-value=3.7e+02 Score=24.11 Aligned_cols=145 Identities=17% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC------CCHHHHHHHHHHHHHhhCCCc
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS------PSDDVREQAVWALGNIAGDSP 191 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~------~~~~i~~~a~~~L~nl~~~~~ 191 (417)
+...++.|-+..+.+.+..|+.+|.+=+.- ...+|.+++++.. .+-......+...+.+..+..
T Consensus 199 F~kvisal~dEs~~~~r~aAl~sLr~dsGl----------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~ 268 (450)
T COG5095 199 FDKVISALLDESDEQTRDAALESLRNDSGL----------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKY 268 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccH----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCc
Q ss_pred hHHHHHHhcCCHHHHHHHh---------cCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh--cCCChHHH
Q 014864 192 RCRDLVLSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI--HSNDDEVL 260 (417)
Q Consensus 192 ~~~~~~~~~g~i~~L~~ll---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~v~ 260 (417)
.+-+..+.+ .+|.++.++ .++..-.++..|+..+...+...+..-......+...+.+.. ........
T Consensus 269 iFvdPY~hq-lmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~ 347 (450)
T COG5095 269 IFVDPYLHQ-LMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQ 347 (450)
T ss_pred eeecHHHHH-HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchh
Q ss_pred HHHHHHHHHhccC
Q 014864 261 TDACWALSYLSDG 273 (417)
Q Consensus 261 ~~a~~~l~~l~~~ 273 (417)
.-++.++..+...
T Consensus 348 YGalkgls~l~ke 360 (450)
T COG5095 348 YGALKGLSILSKE 360 (450)
T ss_pred hhhhhhhhhhchh
No 421
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=25.82 E-value=4.5e+02 Score=26.17 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHH-HHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864 213 QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 213 ~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~-L~~ll~~~~~~v~~~a~~~l~~l~~~~ 274 (417)
++...++-.++..++.+.... |........+.+.. ...+|.+.+.-+...|+.+.++.+...
T Consensus 491 ~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 491 EPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred CCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 333345566666666666544 22222222223333 333456667778888888888877543
No 422
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.07 E-value=4.6e+02 Score=29.65 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=73.3
Q ss_pred CCHHHHHH----hhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 014864 116 GVVPRFVE----FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (417)
Q Consensus 116 g~i~~Lv~----lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 191 (417)
+.++.++. ++.+.+ +.++.-+......+...... .....++..|+..+.+++..-...|+.+|..|+...+
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 44555554 555666 78888887777777665432 1223467778888776666666899999999997654
Q ss_pred hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHH
Q 014864 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259 (417)
Q Consensus 192 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 259 (417)
..-. .-...+..++..+ ++-+..-.+....+++.++..............--.+-+.|.+++...
T Consensus 506 ~~l~--~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~ 570 (1426)
T PF14631_consen 506 SELQ--PFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKY 570 (1426)
T ss_dssp HHHH--HTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHH
T ss_pred HHHH--HHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHH
Confidence 3211 1122344455555 344555566777788887765422111111222223445555555544
No 423
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=7.6e+02 Score=25.18 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=42.0
Q ss_pred hHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 287 ~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
+..+-.+|..+++.+|...=-++|-++..++.. ++++.|-++..+. +.++-.++..+++-+-+|
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~-D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDG-DLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCc-chHHHHHHHHHhccccCC
Confidence 344555566677777777777777776666533 3455666666666 777777777777777665
No 424
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=24.07 E-value=6.1e+02 Score=23.85 Aligned_cols=249 Identities=10% Similarity=0.121 Sum_probs=121.5
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh-
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH- 151 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~- 151 (417)
+..+.+++..+.+.. ....|.+.+-+..... +...+. .+..-+.+..+.+ ..+|.+|..-|-.+|.++.-.
T Consensus 25 ~~y~~il~~~k~~~k-~k~lasq~ip~~fk~f-p~la~~-----a~da~~d~~ed~d-~~ir~qaik~lp~fc~~d~~~r 96 (460)
T KOG2213|consen 25 DDYEGILKAVKGTSK-EKRLASQFIPRFFKHF-PSLADE-----AIDAQLDLCEDDD-VGIRRQAIKGLPLFCKGDALSR 96 (460)
T ss_pred HHHHHHHHHhhcchH-HHHHHHHHHHHHHhhC-chhhhH-----HHHhhhccccccc-hhhHHHHHhccchhccCchhhh
Confidence 445666666665544 4445667777666543 333322 3566677888888 899999999999999873211
Q ss_pred ----HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHH-hhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864 152 ----TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (417)
Q Consensus 152 ----~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~n-l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l 226 (417)
...+...+-+..|+.-....+..+++.++..|.. +..-.+++-..-++..++..+-+.| .+-+.+-.......|
T Consensus 97 v~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal-~dVtgeef~lfm~~L 175 (460)
T KOG2213|consen 97 VNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKAL-EDVTGEEFTLFMDIL 175 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 1111222333333333333567777777766543 2222222222223333444444445 333333444455555
Q ss_pred hhhhcCCCCCChhh---hhchHHHHHHh--hcCCChHHHHHHHHHH----HHhccCChH-HHHHHHHcCChHHHHhhcCC
Q 014864 227 SNFCRGKPQPPFDQ---VSPALPALAHL--IHSNDDEVLTDACWAL----SYLSDGTND-KIQAVIEAGVFPRLAEFLMH 296 (417)
Q Consensus 227 ~~l~~~~~~~~~~~---~~~~l~~L~~l--l~~~~~~v~~~a~~~l----~~l~~~~~~-~~~~~~~~~~~~~L~~~l~~ 296 (417)
.++........... .......+..+ +.-.|++....-+.|+ -..+.+.+. ..-..+...++|. ...-
T Consensus 176 ~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~fdk 252 (460)
T KOG2213|consen 176 ASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HFDK 252 (460)
T ss_pred HhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---cccc
Confidence 55554431111111 12222222222 3334555544444443 334444332 1111222223332 0111
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc
Q 014864 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337 (417)
Q Consensus 297 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 337 (417)
...+.+...+.+|+.++..+..+.. ...+|.++++|.
T Consensus 253 l~e~rkL~lLK~lAEMss~ttaq~a----~q~Lpsi~elLk 289 (460)
T KOG2213|consen 253 LTEERKLDLLKALAEMSSYTTAQAA----RQMLPSIVELLK 289 (460)
T ss_pred chHHHHHHHHHHHHHhCccchHHHH----HHHHHHHHHHHH
Confidence 1256777888888888877643221 234566666553
No 425
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=23.99 E-value=2.7e+02 Score=19.78 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=38.8
Q ss_pred CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCC--hHHHHHHHHHHHHh
Q 014864 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYL 270 (417)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~l~~l 270 (417)
.+..++..|+..+..+++............+...+.+.+.+++ .....-|+.+|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999987544433444566777777776553 44555566677666
No 426
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=23.50 E-value=4.5e+02 Score=22.10 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 014864 288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367 (417)
Q Consensus 288 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 367 (417)
+.+.....+++.-.+..|+-+.-......+...- ...+...+.++ +.-|++...|+|..++..+++....++
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l-------~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEKTDTDLL-------FEIILANLGSK-EFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHccCHHHH-------HHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHHHHHHH
Q ss_pred HCC
Q 014864 368 EAN 370 (417)
Q Consensus 368 ~~~ 370 (417)
+..
T Consensus 190 ~~~ 192 (208)
T cd07064 190 AAH 192 (208)
T ss_pred HHh
No 427
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.67 E-value=6.5e+02 Score=28.13 Aligned_cols=111 Identities=11% Similarity=0.182 Sum_probs=67.9
Q ss_pred hHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (417)
Q Consensus 287 ~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (417)
+..+++-|...|+..+..|+..++++....+......+-......+.++..+. +..||...-.++..+...-...+...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44566667778889999999999999865553322111111223344555666 89999999999999987544443333
Q ss_pred HHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 367 ~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
.+ .+++..+-.-.+.+..+-..|-..+.....
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 32 244444333344556666666666665544
No 428
>PF06436 Pneumovirus_M2: Pneumovirus matrix protein 2 (M2); InterPro: IPR009452 This entry consists of several Pneumovirus matrix glycoprotein M2 sequences. This family functions as a transcription processivity factor that is essential for virus replication [].; GO: 0005198 structural molecule activity, 0046782 regulation of viral transcription, 0019031 viral envelope; PDB: 2L9J_A.
Probab=22.33 E-value=1.4e+02 Score=22.94 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 351 ~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
+|+-+.....+.+..=+.-|.+..+-..+...+.-.+..||.++.++...-....++...+.
T Consensus 27 ~lS~ISGa~~~dRT~e~~LG~~~Vlq~Yi~~~~nITK~~AC~sl~~il~~L~~~dvk~aRd~ 88 (157)
T PF06436_consen 27 GLSLISGAGREDRTQEYALGSIGVLQSYIESNNNITKSSACYSLYNILKQLQEDDVKQARDN 88 (157)
T ss_dssp -------S------SSTT-SHHHHHHHHHH-SS---HHHHHHHHHHHHTTS-HHHHHHHHHT
T ss_pred chhhccCCCcccchhhhhhhhHHHHHHHhccccchhHHHHHHHHHHHHHHHhhHHHHHHhhc
Confidence 45555432222222223347788888888888889999999999999988766666655543
No 429
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=22.13 E-value=1e+02 Score=31.70 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=63.0
Q ss_pred CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
.++.+...+-+. ...+...=+.+....-..-|+.+.-.+...+.++. .++..+++..+..+|.++ .++.+..+|.++
T Consensus 45 snp~KL~KI~~y-L~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~-n~F~ssfL~mv~~LLes~-~~~~~ilg~~sf 121 (819)
T KOG1877|consen 45 SNPSKLPKIGTY-LEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQI-NLFVSSFLRMVQKLLESN-NDEMQILGTNSF 121 (819)
T ss_pred hChhhhhHHHHH-HHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC-CCceeeehhhHH
Confidence 344444443332 34455555555555455556666666666666666 477778999999999998 888777777666
Q ss_pred HHHh---cCCHHHHHHHHH-CCCHHHHHHHhcc
Q 014864 353 SNIT---AGNREQIQAVIE-ANIIGPLVALLEN 381 (417)
Q Consensus 353 ~nl~---~~~~~~~~~l~~-~~~i~~L~~~l~~ 381 (417)
..++ ...|.. ... .++++.+..+.++
T Consensus 122 ~~F~~i~~d~~sy---~~~yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 122 VKFANIEEDGPSY---HRNYDFFISKFSSLCHE 151 (819)
T ss_pred HHHHhhcccCchh---hhhhHHHHHHHHHHhhc
Confidence 6665 333322 122 3566677666654
No 430
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.87 E-value=6.5e+02 Score=27.20 Aligned_cols=131 Identities=8% Similarity=0.059 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHH
Q 014864 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLN 334 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ 334 (417)
+++++..++..|+.-+..-++ .+++...+..+-..|.+.+..||..++.+|-.|..... ...-..+-..+=..+++
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q ss_pred hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (417)
Q Consensus 335 ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~ 395 (417)
+..-..+..|+..+...+.-.... .++...-+..+..++-+.+++++..|...+.
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~------g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSS------GLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcc------cccChhHHHHHHHHHhccCcchHHHHHHHHH
No 431
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=21.30 E-value=3.5e+02 Score=26.87 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=49.2
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHH
Q 014864 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404 (417)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 404 (417)
++-.+..++.++....++-.++..|+.+..- -++..+.-+-..+....-.+|.+.+.-+...|+.+.+.++...+.+
T Consensus 480 v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~e 557 (559)
T PF14868_consen 480 VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSHE 557 (559)
T ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCcc
Confidence 4455666675554556888888888888752 2222221111112233334567889999999999999999886544
No 432
>PF15573 Imm27: Immunity protein 27
Probab=21.17 E-value=1.6e+02 Score=24.99 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=43.3
Q ss_pred hhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChh
Q 014864 161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239 (417)
Q Consensus 161 i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 239 (417)
=+.|++++++ .|..+...|++.++.+|.+.+ .+ +.+-+ +.|...+...+-..+..+...|+
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~THdD-L~----~~nNl----~FLs~asE~~v~TF~s~A~~tlS--------- 109 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVATHDD-LR----DSNNL----RFLSSASEFGVFTFASGAITTLS--------- 109 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcchHh-hh----cccce----ehHhhhhHHHHHHHHHHhhccch---------
Confidence 3667888886 567788899999999997754 22 22222 22212222333334444444443
Q ss_pred hhhchHHHHHHhhc
Q 014864 240 QVSPALPALAHLIH 253 (417)
Q Consensus 240 ~~~~~l~~L~~ll~ 253 (417)
-.++|.|+.++.
T Consensus 110 --yeVIPYLLaLle 121 (259)
T PF15573_consen 110 --YEVIPYLLALLE 121 (259)
T ss_pred --hhHHHHHHHHHH
Confidence 357888888885
No 433
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=21.01 E-value=3.5e+02 Score=19.90 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=44.5
Q ss_pred CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhh
Q 014864 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (417)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~ 293 (417)
+.+.+.....|++.+.... ..++..+.+.+....+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 4556666677777765322 3455555666655555544555555555554433333333333334555555
Q ss_pred cCCCChhhHHHHHHHH
Q 014864 294 LMHPSPSVLIPALRTV 309 (417)
Q Consensus 294 l~~~~~~v~~~a~~~L 309 (417)
....++.++....+.+
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 5555555555444443
No 434
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=20.93 E-value=3.6e+02 Score=20.00 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhc
Q 014864 341 KKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLE 380 (417)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~ 380 (417)
...+-..+..+|.-++.| +.++...+.+..++..+..+|.
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 445666777777777777 7777777778888887777764
No 435
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.85 E-value=1e+03 Score=25.20 Aligned_cols=79 Identities=22% Similarity=0.220 Sum_probs=51.4
Q ss_pred HHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCC-----Cc-hHHHHHHhcCCHHHHHHHhcCC-CchhHHHHHH
Q 014864 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD-----SP-RCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNAT 223 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~-----~~-~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~a~ 223 (417)
.+.+-+...++.++.++.. .++.++..|...|+.|++. .| .....+.....+..|+..+... .........+
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i 262 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGI 262 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHH
Confidence 3445566789999999974 5688999999999998866 33 2555666666777777666432 2344444444
Q ss_pred HHHhhhh
Q 014864 224 WTLSNFC 230 (417)
Q Consensus 224 ~~l~~l~ 230 (417)
.++..++
T Consensus 263 ~vlI~ll 269 (838)
T KOG2073|consen 263 IVLISLL 269 (838)
T ss_pred HHHHHhc
Confidence 4444443
No 436
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=20.39 E-value=4.1e+02 Score=27.76 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred hHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366 (417)
Q Consensus 287 ~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (417)
...|+.+|+++...-....+..|.+=..-.-.... .++++++..+..-=... ..--+..|...|+.+..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pgvd~aa-~vka~fl~~i~~~~~~~-~~i~~~~a~~~l~~m~gg~~------ 98 (844)
T TIGR00117 27 MAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAA-YVKAGFLAAIAKGEAKC-PLISPEKAIELLGTMQGGYN------ 98 (844)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHHcCCCCC-cccCHHHHHHHHhhccCCCC------
Q ss_pred HHCCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014864 367 IEANIIGPLVALLENAEFDIKKEAAWAISN 396 (417)
Q Consensus 367 ~~~~~i~~L~~~l~~~~~~v~~~a~~~L~n 396 (417)
++.|+++|.+.|..+...|+.+|.+
T Consensus 99 -----~~~l~~~~~~~~~~~a~~a~~~l~~ 123 (844)
T TIGR00117 99 -----VHPLIDALDSQDANIAPIAAKALSH 123 (844)
T ss_pred -----HHHHHHHHhCCCHHHHHHHHHHHhc
No 437
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=20.16 E-value=6e+02 Score=22.35 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHHHhcC----------------CHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCH
Q 014864 341 KKSIKKEACWTVSNITAG----------------NREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 341 ~~~v~~~a~~~L~nl~~~----------------~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~ 403 (417)
+..+-+.+...+.|+..- ....+..+.+.|+...|+.+.++. ..+...-.+..+..+..+.++
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 345556666777777642 012344556789999999998875 334445778888888877766
Q ss_pred HHH
Q 014864 404 EQI 406 (417)
Q Consensus 404 ~~~ 406 (417)
+.+
T Consensus 213 ~~L 215 (266)
T PF04821_consen 213 ESL 215 (266)
T ss_pred HHH
Confidence 644
No 438
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.04 E-value=4.8e+02 Score=21.18 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l 294 (417)
..+++..|..+++.+........ ....++..+..-|.+ +.+++.-++..+..++...+.....-++ .+++.+-..|
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 35789999999999877532222 234557777777766 8899999999999998877654432222 3556666665
Q ss_pred C
Q 014864 295 M 295 (417)
Q Consensus 295 ~ 295 (417)
+
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 3
Done!