Query 014864
Match_columns 417
No_of_seqs 358 out of 2121
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 19:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 7.1E-63 2.4E-67 478.6 38.5 414 1-415 1-422 (529)
2 4b8j_A Importin subunit alpha- 100.0 6.1E-57 2.1E-61 438.4 40.0 414 1-415 3-416 (528)
3 1wa5_B Importin alpha subunit; 100.0 8.8E-53 3E-57 409.0 33.5 407 7-415 12-430 (530)
4 3ul1_B Importin subunit alpha- 100.0 4E-51 1.4E-55 393.9 39.0 385 29-415 14-403 (510)
5 2jdq_A Importin alpha-1 subuni 100.0 9.4E-40 3.2E-44 311.3 40.7 340 75-415 22-363 (450)
6 3now_A UNC-45 protein, SD10334 100.0 2.7E-40 9.1E-45 325.2 26.8 334 75-415 379-752 (810)
7 3ul1_B Importin subunit alpha- 100.0 2.5E-39 8.5E-44 311.8 31.5 339 73-415 100-451 (510)
8 3tpo_A Importin subunit alpha- 100.0 1E-38 3.4E-43 309.3 34.7 340 72-415 118-470 (529)
9 3nmz_A APC variant protein; pr 100.0 9.7E-40 3.3E-44 304.9 25.8 336 71-415 30-423 (458)
10 3nmz_A APC variant protein; pr 100.0 2.6E-37 8.7E-42 288.6 26.3 327 71-401 68-452 (458)
11 4b8j_A Importin subunit alpha- 100.0 2.3E-36 7.9E-41 293.6 31.2 324 73-401 117-445 (528)
12 1wa5_B Importin alpha subunit; 100.0 3.6E-36 1.2E-40 292.2 32.3 325 73-401 130-459 (530)
13 2jdq_A Importin alpha-1 subuni 100.0 1.9E-36 6.4E-41 288.5 29.2 324 73-401 64-392 (450)
14 1xm9_A Plakophilin 1; armadill 100.0 2.9E-36 9.9E-41 286.1 28.3 321 74-401 3-451 (457)
15 3l6x_A Catenin delta-1; cateni 100.0 7.5E-35 2.6E-39 277.7 31.3 331 73-411 48-486 (584)
16 3now_A UNC-45 protein, SD10334 100.0 1.4E-35 4.8E-40 291.8 27.1 325 73-401 421-784 (810)
17 1jdh_A Beta-catenin; beta-cate 100.0 6.4E-33 2.2E-37 269.6 30.3 324 73-403 101-432 (529)
18 1xm9_A Plakophilin 1; armadill 100.0 1.9E-33 6.6E-38 266.7 23.4 292 117-414 3-372 (457)
19 2z6h_A Catenin beta-1, beta-ca 100.0 2E-32 6.7E-37 271.7 30.2 326 73-405 98-431 (644)
20 3nmw_A APC variant protein; AR 100.0 2.9E-33 1E-37 253.9 22.1 270 131-403 46-338 (354)
21 3nmw_A APC variant protein; AR 100.0 2.3E-33 8E-38 254.6 20.1 275 86-363 45-340 (354)
22 3l6x_A Catenin delta-1; cateni 100.0 1E-31 3.4E-36 256.2 27.1 296 114-415 46-447 (584)
23 1jdh_A Beta-catenin; beta-cate 100.0 1.8E-31 6.2E-36 259.4 25.1 334 73-414 59-398 (529)
24 2z6g_A B-catenin; FULL-length, 100.0 2.2E-30 7.4E-35 261.0 31.1 317 73-396 234-556 (780)
25 2z6h_A Catenin beta-1, beta-ca 100.0 1.8E-30 6.2E-35 257.6 26.8 334 73-414 56-395 (644)
26 4hxt_A De novo protein OR329; 100.0 2.1E-29 7.4E-34 220.6 28.9 242 116-401 2-243 (252)
27 2z6g_A B-catenin; FULL-length, 100.0 3.5E-30 1.2E-34 259.4 26.2 334 73-414 192-531 (780)
28 4db8_A Armadillo-repeat protei 100.0 1.3E-29 4.5E-34 222.0 20.7 239 116-357 12-251 (252)
29 4hxt_A De novo protein OR329; 100.0 3E-28 1E-32 213.3 26.5 241 73-358 2-242 (252)
30 4db8_A Armadillo-repeat protei 100.0 6.2E-29 2.1E-33 217.7 20.7 239 159-399 12-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 2.6E-25 8.8E-30 214.9 22.2 320 75-399 336-728 (778)
32 4db6_A Armadillo repeat protei 99.9 2.1E-24 7.2E-29 183.4 24.8 201 113-357 9-209 (210)
33 4db6_A Armadillo repeat protei 99.9 1.1E-24 3.7E-29 185.1 22.0 199 199-399 10-209 (210)
34 1xqr_A HSPBP1 protein; armadil 99.9 3.5E-24 1.2E-28 189.2 20.7 226 131-357 54-287 (296)
35 1xqr_A HSPBP1 protein; armadil 99.9 3.2E-23 1.1E-27 183.1 16.2 185 216-401 54-240 (296)
36 3tt9_A Plakophilin-2; cell adh 99.9 5.5E-23 1.9E-27 173.7 15.2 197 117-315 9-230 (233)
37 3opb_A SWI5-dependent HO expre 99.9 6.1E-22 2.1E-26 191.5 20.9 325 75-412 298-695 (778)
38 3tt9_A Plakophilin-2; cell adh 99.9 5.4E-22 1.9E-26 167.6 13.9 197 73-273 8-230 (233)
39 3grl_A General vesicular trans 99.8 1.2E-16 4.3E-21 150.7 28.6 323 73-401 21-396 (651)
40 4fdd_A Transportin-1; heat rep 99.8 3.2E-19 1.1E-23 182.8 10.3 317 74-401 129-473 (852)
41 1oyz_A Hypothetical protein YI 99.8 2.9E-16 1E-20 139.2 23.4 255 73-396 23-279 (280)
42 4fdd_A Transportin-1; heat rep 99.7 2.8E-17 9.4E-22 168.4 18.3 310 75-400 92-430 (852)
43 1oyz_A Hypothetical protein YI 99.7 4.1E-16 1.4E-20 138.2 23.5 242 112-409 19-260 (280)
44 3grl_A General vesicular trans 99.7 4.5E-15 1.5E-19 140.2 29.7 327 73-400 60-450 (651)
45 1b3u_A Protein (protein phosph 99.7 1.3E-15 4.5E-20 149.4 18.3 309 75-404 244-553 (588)
46 1b3u_A Protein (protein phosph 99.7 3E-15 1E-19 146.9 20.9 304 74-398 282-586 (588)
47 2vgl_B AP-2 complex subunit be 99.6 3.7E-15 1.3E-19 145.9 18.0 294 74-400 87-383 (591)
48 1ibr_B P95, importin beta-1 su 99.6 3E-15 1E-19 142.4 14.8 310 76-401 93-439 (462)
49 2vgl_B AP-2 complex subunit be 99.6 2.9E-14 1E-18 139.5 18.5 296 73-399 13-311 (591)
50 1qgr_A Protein (importin beta 99.6 2.3E-14 8E-19 147.3 18.7 317 74-400 129-480 (876)
51 3ltm_A Alpha-REP4; protein eng 99.6 9.1E-14 3.1E-18 117.5 19.0 188 158-401 18-205 (211)
52 3ltj_A Alpharep-4; protein eng 99.6 2.2E-13 7.7E-18 114.2 20.4 185 159-399 14-198 (201)
53 3ltm_A Alpha-REP4; protein eng 99.6 1.4E-13 4.8E-18 116.4 18.7 188 115-359 18-205 (211)
54 3ltj_A Alpharep-4; protein eng 99.6 1.8E-13 6.2E-18 114.8 17.3 184 116-356 14-197 (201)
55 1qgr_A Protein (importin beta 99.6 1.9E-13 6.6E-18 140.5 20.6 313 75-400 323-723 (876)
56 2bpt_A Importin beta-1 subunit 99.6 6.7E-14 2.3E-18 143.6 17.0 315 74-402 325-671 (861)
57 2bpt_A Importin beta-1 subunit 99.6 2.5E-14 8.5E-19 146.8 13.8 316 76-401 372-713 (861)
58 1w63_A Adapter-related protein 99.5 4.8E-13 1.6E-17 131.4 22.0 288 74-400 108-415 (618)
59 1ibr_B P95, importin beta-1 su 99.5 9.8E-14 3.3E-18 131.9 16.3 277 74-358 129-438 (462)
60 1w63_A Adapter-related protein 99.5 1.3E-12 4.5E-17 128.3 22.9 292 73-402 70-382 (618)
61 1u6g_C TIP120 protein, CAND1; 99.4 1.8E-12 6.1E-17 137.9 16.4 273 74-359 7-286 (1230)
62 1u6g_C TIP120 protein, CAND1; 99.4 1.3E-11 4.4E-16 131.4 17.5 318 74-401 87-465 (1230)
63 2vgl_A Adaptor protein complex 99.3 8.5E-10 2.9E-14 108.0 28.8 295 73-400 74-434 (621)
64 2db0_A 253AA long hypothetical 99.3 7E-10 2.4E-14 86.5 19.2 218 157-400 30-247 (253)
65 4gmo_A Putative uncharacterize 99.2 1.4E-10 4.8E-15 115.0 16.3 215 116-356 35-257 (684)
66 4ady_A RPN2, 26S proteasome re 99.2 9.1E-10 3.1E-14 109.3 21.2 273 74-402 393-679 (963)
67 2vgl_A Adaptor protein complex 99.1 8.5E-09 2.9E-13 101.0 20.6 218 116-357 187-433 (621)
68 4gmo_A Putative uncharacterize 99.1 4.9E-10 1.7E-14 111.1 11.6 195 202-398 35-257 (684)
69 2qk2_A LP04448P; mini spindles 99.1 1.4E-09 4.8E-14 93.7 12.3 191 205-406 19-212 (242)
70 2db0_A 253AA long hypothetical 99.1 1.3E-07 4.3E-12 73.9 21.6 215 73-314 32-246 (253)
71 3tjz_B Coatomer subunit gamma; 99.0 1.8E-08 6.3E-13 90.2 18.9 276 74-394 69-348 (355)
72 4ady_A RPN2, 26S proteasome re 99.0 8.2E-08 2.8E-12 95.5 25.0 274 75-401 431-721 (963)
73 2qk2_A LP04448P; mini spindles 98.9 8.7E-08 3E-12 82.4 18.0 185 76-272 18-205 (242)
74 3b2a_A TON_1937, putative unch 98.9 2.8E-07 9.5E-12 75.3 18.5 187 73-273 33-219 (265)
75 2qk1_A Protein STU2; STU2P, XM 98.9 1.3E-08 4.4E-13 87.6 11.7 193 206-401 21-222 (249)
76 3tjz_B Coatomer subunit gamma; 98.9 7.9E-08 2.7E-12 86.1 16.1 243 73-352 104-348 (355)
77 3b2a_A TON_1937, putative unch 98.8 1.4E-07 4.9E-12 76.9 14.5 188 116-316 33-220 (265)
78 1te4_A Conserved protein MTH18 98.8 6.3E-10 2.2E-14 85.9 -0.1 121 242-397 11-131 (131)
79 2qk1_A Protein STU2; STU2P, XM 98.7 8.6E-08 2.9E-12 82.5 11.2 193 163-357 20-220 (249)
80 1te4_A Conserved protein MTH18 98.7 4.1E-09 1.4E-13 81.3 1.0 121 115-270 11-131 (131)
81 2iw3_A Elongation factor 3A; a 98.6 4.1E-06 1.4E-10 84.5 22.4 300 73-397 14-322 (986)
82 1ho8_A Vacuolar ATP synthase s 98.5 4.9E-06 1.7E-10 76.3 16.9 268 83-357 135-476 (480)
83 1ho8_A Vacuolar ATP synthase s 98.5 5.8E-05 2E-09 69.3 23.8 321 74-399 78-476 (480)
84 4hat_C Exportin-1; heat repeat 98.4 5.9E-05 2E-09 77.8 24.8 299 84-402 206-572 (1023)
85 3dad_A FH1/FH2 domain-containi 98.2 4E-05 1.4E-09 66.8 15.3 157 75-234 120-289 (339)
86 1wa5_C Importin alpha RE-expor 98.1 3.9E-05 1.3E-09 79.4 16.0 305 78-404 460-796 (960)
87 1wa5_C Importin alpha RE-expor 98.1 9.1E-05 3.1E-09 76.7 17.9 256 132-398 376-669 (960)
88 3m1i_C Exportin-1; heat repeat 98.1 0.00065 2.2E-08 71.0 23.7 299 85-402 207-572 (1049)
89 2x1g_F Cadmus; transport prote 98.1 0.00013 4.4E-09 75.8 18.2 250 133-399 437-722 (971)
90 3dad_A FH1/FH2 domain-containi 98.1 8.5E-05 2.9E-09 64.8 14.0 181 206-388 123-325 (339)
91 2x1g_F Cadmus; transport prote 98.1 0.00016 5.6E-09 75.0 18.8 303 85-401 256-617 (971)
92 2x19_B Importin-13; nuclear tr 98.0 0.00011 3.8E-09 76.2 15.9 309 75-402 243-602 (963)
93 3ibv_A Exportin-T; karyopherin 98.0 3.4E-05 1.2E-09 79.4 11.5 302 84-401 204-568 (980)
94 2iw3_A Elongation factor 3A; a 97.9 0.0036 1.2E-07 63.5 25.0 265 74-356 55-323 (986)
95 4ffb_C Protein STU2; tubulin f 97.9 0.00045 1.5E-08 60.3 15.7 191 73-273 10-213 (278)
96 4ffb_C Protein STU2; tubulin f 97.7 0.00067 2.3E-08 59.2 13.6 186 206-401 14-214 (278)
97 4hat_C Exportin-1; heat repeat 97.7 0.0066 2.3E-07 62.7 22.8 152 244-402 452-621 (1023)
98 3m1i_C Exportin-1; heat repeat 97.7 0.0072 2.5E-07 63.2 22.9 235 159-402 344-621 (1049)
99 3gjx_A Exportin-1; transport, 97.6 0.011 3.9E-07 61.0 23.4 297 84-402 218-598 (1073)
100 1upk_A MO25 protein; transfera 97.6 0.003 1E-07 55.1 15.9 240 155-397 74-330 (341)
101 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00013 4.4E-09 67.6 6.7 249 69-352 170-431 (800)
102 2of3_A ZYG-9; multifunctional 97.5 0.0026 8.7E-08 54.3 14.3 178 162-357 49-236 (266)
103 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00054 1.8E-08 63.6 10.3 244 117-395 175-432 (800)
104 1upk_A MO25 protein; transfera 97.5 0.013 4.4E-07 51.2 18.0 201 196-401 73-285 (341)
105 2x19_B Importin-13; nuclear tr 97.4 0.0096 3.3E-07 61.6 19.2 220 126-357 459-714 (963)
106 1lrv_A LRV, leucine-rich repea 97.3 0.00024 8.2E-09 60.2 5.5 67 248-352 175-241 (244)
107 1lrv_A LRV, leucine-rich repea 97.3 0.00031 1.1E-08 59.5 6.3 141 162-394 101-241 (244)
108 2of3_A ZYG-9; multifunctional 97.3 0.0055 1.9E-07 52.2 13.6 176 76-271 49-235 (266)
109 3ibv_A Exportin-T; karyopherin 97.1 0.012 4.2E-07 60.5 16.6 266 128-400 205-525 (980)
110 2fv2_A RCD1 required for cell 96.9 0.029 9.8E-07 46.8 13.4 152 256-410 14-183 (268)
111 3l9t_A Putative uncharacterize 96.8 0.032 1.1E-06 46.2 13.3 144 118-283 73-218 (240)
112 3l9t_A Putative uncharacterize 96.8 0.029 1E-06 46.4 12.7 143 242-412 70-219 (240)
113 3u0r_A Apoptosis inhibitor 5; 96.8 0.21 7.1E-06 45.9 19.1 123 171-313 40-162 (507)
114 2fv2_A RCD1 required for cell 96.5 0.03 1E-06 46.7 10.8 195 75-275 5-227 (268)
115 3u0r_A Apoptosis inhibitor 5; 96.2 0.51 1.8E-05 43.3 17.9 245 131-402 42-301 (507)
116 3gjx_A Exportin-1; transport, 96.2 1 3.4E-05 46.7 22.4 156 245-404 479-649 (1073)
117 3ebb_A Phospholipase A2-activa 96.1 0.33 1.1E-05 42.4 16.2 173 118-296 105-287 (304)
118 2f31_A Diaphanous protein homo 96.0 0.28 9.5E-06 41.1 14.7 154 78-233 5-182 (233)
119 3c2g_A SYS-1 protein; beta-cat 96.0 0.76 2.6E-05 40.2 21.1 319 77-398 10-402 (619)
120 3eg5_B Protein diaphanous homo 95.8 0.52 1.8E-05 42.7 16.8 158 75-234 68-249 (383)
121 3a6p_A Exportin-5; exportin-5, 95.7 1.3 4.5E-05 46.8 21.8 300 74-400 12-381 (1204)
122 1lsh_A Lipovitellin (LV-1N, LV 95.5 0.66 2.3E-05 48.2 18.2 166 160-358 392-577 (1056)
123 1lsh_A Lipovitellin (LV-1N, LV 95.4 2.3 8E-05 44.2 21.9 172 203-403 393-580 (1056)
124 3ebb_A Phospholipase A2-activa 95.2 0.5 1.7E-05 41.2 13.9 143 245-388 149-295 (304)
125 3c2g_A SYS-1 protein; beta-cat 95.1 0.39 1.3E-05 42.0 12.2 111 183-295 266-377 (619)
126 2bnx_A Diaphanous protein homo 94.7 2 6.9E-05 38.9 16.9 157 76-234 7-187 (386)
127 3gs3_A Symplekin, LD45768P; he 94.4 2.1 7E-05 36.2 20.2 88 88-186 30-117 (257)
128 3o2t_A Symplekin; heat repeat, 94.1 3.2 0.00011 37.3 16.5 88 88-186 40-127 (386)
129 3a6p_A Exportin-5; exportin-5, 93.7 1.4 4.9E-05 46.6 15.7 259 119-398 15-330 (1204)
130 3fga_B Serine/threonine-protei 93.6 4 0.00014 36.8 17.3 237 150-400 120-367 (403)
131 2f31_A Diaphanous protein homo 93.5 2.8 9.6E-05 34.9 17.1 166 148-345 33-216 (233)
132 3qml_C Protein SLS1, nucleotid 93.5 1 3.4E-05 38.8 11.5 137 256-398 41-188 (315)
133 3eg5_B Protein diaphanous homo 93.3 1.9 6.5E-05 39.0 13.9 123 256-378 133-273 (383)
134 2p8q_B Snurportin-1; heat repe 92.5 0.11 3.7E-06 29.2 2.7 38 11-50 2-40 (40)
135 2bnx_A Diaphanous protein homo 91.5 6.5 0.00022 35.5 15.0 131 256-386 71-219 (386)
136 2npp_B PP2A, B subunit, serine 90.3 11 0.00037 34.7 17.9 241 149-404 152-403 (449)
137 2npp_B PP2A, B subunit, serine 89.2 7.8 0.00027 35.6 13.3 226 75-319 164-404 (449)
138 3fga_B Serine/threonine-protei 88.8 4.8 0.00016 36.3 11.4 224 75-317 131-369 (403)
139 1vsy_5 Proteasome activator BL 84.9 38 0.0013 34.9 17.2 114 286-410 761-885 (997)
140 2jak_A Serine/threonine-protei 83.5 13 0.00046 33.3 11.4 192 152-351 167-361 (392)
141 1x5b_A Signal transducing adap 83.1 1.7 5.7E-05 33.9 4.9 74 73-146 52-125 (163)
142 3qml_C Protein SLS1, nucleotid 82.3 11 0.00037 32.5 9.8 147 75-231 24-189 (315)
143 3ldz_A STAM-1, signal transduc 81.9 1.3 4.6E-05 33.5 3.9 72 73-145 42-113 (140)
144 1mhq_A ADP-ribosylation factor 81.8 2.3 7.7E-05 32.5 5.1 74 73-146 38-116 (148)
145 3g2s_A C-terminal fragment of 80.5 2.8 9.5E-05 32.1 5.2 74 73-146 48-126 (149)
146 3o2t_A Symplekin; heat repeat, 80.2 24 0.00083 31.6 11.9 108 285-398 63-182 (386)
147 1x5b_A Signal transducing adap 76.0 6.1 0.00021 30.7 6.1 73 160-232 53-126 (163)
148 3zyq_A Hepatocyte growth facto 75.8 2 6.7E-05 35.6 3.3 74 73-146 45-118 (226)
149 1juq_A ADP-ribosylation factor 75.3 3.3 0.00011 32.5 4.4 74 73-146 50-128 (171)
150 1vsy_5 Proteasome activator BL 74.1 8.2 0.00028 39.7 8.0 187 160-357 134-365 (997)
151 3zyq_A Hepatocyte growth facto 70.9 8.3 0.00028 31.8 6.0 73 160-232 46-119 (226)
152 2b6c_A Hypothetical protein EF 70.6 40 0.0014 27.5 10.1 134 212-368 65-199 (220)
153 1dvp_A HRS, hepatocyte growth 70.1 3.1 0.00011 34.3 3.2 73 73-145 42-114 (220)
154 3gjx_B Snurportin-1; transport 69.1 1.4 4.9E-05 38.5 1.0 51 2-53 20-72 (365)
155 2b6c_A Hypothetical protein EF 67.6 49 0.0017 26.9 13.5 139 246-411 58-199 (220)
156 3g2s_A C-terminal fragment of 67.5 26 0.0009 26.6 7.7 73 160-232 49-127 (149)
157 3ldz_A STAM-1, signal transduc 67.2 12 0.00042 28.1 5.8 70 328-398 43-113 (140)
158 2jak_A Serine/threonine-protei 67.1 9.3 0.00032 34.3 5.8 72 75-148 176-247 (392)
159 3gae_A Protein DOA1; UFD3, CDC 66.6 24 0.00084 29.5 8.1 133 134-273 71-218 (253)
160 3jxy_A Alkylpurine DNA glycosy 65.0 57 0.0019 26.8 11.1 139 247-412 65-207 (232)
161 3pst_A Protein DOA1; protein d 62.8 70 0.0024 29.1 10.7 131 134-275 243-392 (425)
162 1juq_A ADP-ribosylation factor 61.5 41 0.0014 26.2 8.0 94 296-399 28-128 (171)
163 1dvp_A HRS, hepatocyte growth 60.5 13 0.00044 30.5 5.2 72 160-231 43-115 (220)
164 1mhq_A ADP-ribosylation factor 60.1 18 0.00061 27.5 5.5 73 242-314 37-116 (148)
165 3gs3_A Symplekin, LD45768P; he 58.2 82 0.0028 26.4 14.9 107 202-313 54-172 (257)
166 1elk_A Target of MYB1; superhe 56.9 16 0.00055 28.1 4.9 74 73-146 53-130 (157)
167 3pst_A Protein DOA1; protein d 56.5 22 0.00076 32.2 6.4 102 296-400 273-390 (425)
168 3gae_A Protein DOA1; UFD3, CDC 55.3 13 0.00045 31.2 4.5 102 296-400 101-218 (253)
169 3l3f_X Protein DOA1, DOA1/UFD3 54.9 25 0.00085 31.2 6.3 131 134-275 180-329 (362)
170 1vdy_A Hypothetical protein (R 54.8 27 0.00092 26.2 5.6 42 371-412 50-91 (140)
171 3l3f_X Protein DOA1, DOA1/UFD3 52.5 22 0.00074 31.6 5.5 102 296-400 210-327 (362)
172 4atg_A TAF6; transcription, TF 44.4 71 0.0024 25.5 6.9 112 159-271 40-161 (196)
173 3jxy_A Alkylpurine DNA glycosy 42.2 41 0.0014 27.6 5.5 76 286-369 132-207 (232)
174 1vdy_A Hypothetical protein (R 42.0 48 0.0016 24.8 5.2 95 299-399 25-130 (140)
175 1sz9_A PCF11 protein; RNA poly 36.8 80 0.0027 23.7 5.8 89 257-356 25-113 (144)
176 1elk_A Target of MYB1; superhe 36.6 50 0.0017 25.2 4.8 72 160-231 54-130 (157)
177 1t06_A Hypothetical protein; s 33.7 1.3E+02 0.0043 24.7 7.1 76 329-411 110-191 (235)
178 1vsy_4 Proteasome activator BL 33.5 2.6E+02 0.0087 28.0 10.4 118 151-270 332-453 (799)
179 3vld_A DNA mismatch repair pro 30.8 3.3E+02 0.011 25.2 11.8 149 75-238 75-232 (500)
180 1sz9_A PCF11 protein; RNA poly 29.6 1.8E+02 0.006 21.8 7.3 71 328-399 44-114 (144)
181 4flb_A Regulation of nuclear P 25.4 42 0.0015 24.6 2.6 63 244-316 9-71 (132)
182 1t06_A Hypothetical protein; s 22.9 94 0.0032 25.5 4.5 75 287-367 110-190 (235)
183 2l9j_A M2-1, matrix protein 2- 22.5 1.3E+02 0.0045 20.9 4.2 44 369-412 18-61 (121)
184 1a92_A Delta antigen; leucine 22.4 77 0.0026 18.4 2.5 18 24-41 11-28 (50)
185 3gvo_A Pumilio 2, pumilio homo 21.9 4E+02 0.014 23.2 13.8 36 93-129 37-72 (351)
186 4fu3_A Regulation of nuclear P 21.4 1.6E+02 0.0054 21.5 5.1 59 246-314 10-68 (135)
187 3rru_A TOM1L1 protein; structu 20.8 62 0.0021 24.6 2.7 73 74-146 54-130 (152)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=7.1e-63 Score=478.57 Aligned_cols=414 Identities=48% Similarity=0.749 Sum_probs=334.8
Q ss_pred CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCC-CCccCCCCCchhhhccCHHH
Q 014864 1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV 77 (417)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 77 (417)
||...+. .+++|+++||+ |+|++|+|+||+++.++|||+||++.+.|||++....++ ..|..............++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 6666554 67899999998 999999999999999999999999999999987542222 12222111112222247899
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (417)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 157 (417)
+++.++|+|++.|..|+..++++++.+.+++++.+++.|++|.|+++|+.++++.++.+|+|+|+|++.++++++..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999987666999999999999999999999999999
Q ss_pred CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC----chhHHHHHHHHHhhhhcCC
Q 014864 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~~a~~~l~~l~~~~ 233 (417)
.|++|.|+.+|.+++..++++|+|+|+||+.+++.+++.+.+.|++++|+.++.... ...+++.++|++++++...
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995332 2457899999999999987
Q ss_pred -CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
+........+++|.|+.++.+++++++..++|+|++++.++++..+.+...|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5556667789999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 392 (417)
+.+++.....+++.|+++.|..+|.++ ++.++++|+|+|+|++.+++++...+++.|++|.|+.++.+++++++++|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHhcCcc
Q 014864 393 AISNATSGGTHEQIKYEHTFCTI 415 (417)
Q Consensus 393 ~L~nl~~~~~~~~~~~l~~~g~i 415 (417)
+|+|++.+++.+++.++++.|++
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i 422 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGII 422 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCH
Confidence 99999999999999999999986
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=6.1e-57 Score=438.40 Aligned_cols=414 Identities=80% Similarity=1.216 Sum_probs=332.4
Q ss_pred CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHh
Q 014864 1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA 80 (417)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 80 (417)
||.++++++++|+++||++++++|+|+||+++.++|||+||++++.|||++....+.. +.+..........+.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~ 81 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG 81 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence 7888888899999999999999999999999999999999999999999974322211 011111112233467999999
Q ss_pred hhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCC
Q 014864 81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160 (417)
Q Consensus 81 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~ 160 (417)
.|.++++..+..|++.|+++++...+++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus 82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~ 161 (528)
T 4b8j_A 82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161 (528)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence 99999999999999999999988755889999999999999999998765899999999999999998999999999999
Q ss_pred hhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh
Q 014864 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240 (417)
Q Consensus 161 i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 240 (417)
++.|+.+|.++++.+++.|+|+|+||+.+.+.++..+...|++++|+.++..+.++.++..++|+|++|+...+......
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 99999999999999999999999999999998999999999999999999777899999999999999999887777777
Q ss_pred hhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 014864 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320 (417)
Q Consensus 241 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 320 (417)
..+++|.|+.++.++++.++..++|+|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 321 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
+.+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++++..+++.|+++.|+.+|.+++++++..|+|+|+|++..
T Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 98999999999999999765789999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHhcCcc
Q 014864 401 GTHEQIKYEHTFCTI 415 (417)
Q Consensus 401 ~~~~~~~~l~~~g~i 415 (417)
+++++..++++.|++
T Consensus 402 ~~~~~~~~l~~~~~i 416 (528)
T 4b8j_A 402 GSHDQIKYLVSEGCI 416 (528)
T ss_dssp SCHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHCCCH
Confidence 889999999988764
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=8.8e-53 Score=409.05 Aligned_cols=407 Identities=54% Similarity=0.805 Sum_probs=352.0
Q ss_pred CCchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhccc---CCCCCccC----CCCCchhhhccCHHH
Q 014864 7 SKADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLAND----VNAPGTAKKLENLPV 77 (417)
Q Consensus 7 ~~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~~---~~~~~~~~----~~~~~~~~~~~~l~~ 77 (417)
.+++.|++.||+ + +|++|+|+||+++.++|||+||++.+.|||++... .+...+.+ ..........+.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (530)
T 1wa5_B 12 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 91 (530)
T ss_dssp CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred CchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHH
Confidence 366889999999 8 99999999999999999999999999999997532 11100000 000000012257999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 014864 78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID 157 (417)
Q Consensus 78 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 157 (417)
+++.|.++++..+..|+..|+++++...+++++.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~ 171 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 171 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999887656778889999999999999999733899999999999999988889999999
Q ss_pred CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCC
Q 014864 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236 (417)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~ 236 (417)
.|+++.|+.+|.++++.+++.|+|+|++++.+.+.+++.+...|+++.|+.++ .+.++.++..++|+|++|+... +..
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999888999999999999999999 5588999999999999999987 666
Q ss_pred ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC
Q 014864 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 316 (417)
......+++|.|+.++.++++.++..++|+|++++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.++
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 67777899999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014864 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396 (417)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~n 396 (417)
+...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++++++.+++.|+++.|+.+|.+++++++..|+|+|+|
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 409 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 98888899999999999999998 99999999999999999889999999999999999999999999999999999999
Q ss_pred hhCCCCH--HHHHHHHhcCcc
Q 014864 397 ATSGGTH--EQIKYEHTFCTI 415 (417)
Q Consensus 397 l~~~~~~--~~~~~l~~~g~i 415 (417)
++..+++ ++..++++.|++
T Consensus 410 l~~~~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 410 ASSGGLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp HHHHTTTCTHHHHHHHHTTCH
T ss_pred HHhcCCCcHHHHHHHHHCCCH
Confidence 9998776 888888887754
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4e-51 Score=393.93 Aligned_cols=385 Identities=48% Similarity=0.764 Sum_probs=323.1
Q ss_pred hhhHHHHHHHHhhhHHHHhhhhhcccCCCCCccCCCCCchhhhccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc
Q 014864 29 REDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP 108 (417)
Q Consensus 29 r~~~~~~lrk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~ 108 (417)
|....++.|+++.+....+.++...+.++....+.... ....-..++.+++.++|+|++.|..|+..+|++++.+++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp 92 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSN-QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92 (510)
T ss_dssp ----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhccc-cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence 33445677777776666666655443332111111111 11111468999999999999999999999999999988999
Q ss_pred HHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 014864 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG 188 (417)
Q Consensus 109 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~ 188 (417)
++.+++.|++|.|+++|+.++++.+|.+|+|+|+|+++++++++..+++.|++|.|+.+|.+++..++++|+|+|+||+.
T Consensus 93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999876668999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhcCCHHHHHHHhcCCC----chhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHH
Q 014864 189 DSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDA 263 (417)
Q Consensus 189 ~~~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 263 (417)
+++.+++.+.+.|++++|+.++.... ...+++.++|++++++... +........+++|.|+.++.+++++++..+
T Consensus 173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999995332 2457899999999999987 555666678999999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchh
Q 014864 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343 (417)
Q Consensus 264 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 343 (417)
+|+|++|+.+.++..+.+.+.|+++.|+.+|.++++.++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++.
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~ 331 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN 331 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence 9999999999998888899999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864 344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI 415 (417)
Q Consensus 344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i 415 (417)
+++.|+|+|+|++.+++++++.+++.|+++.|+.++.+++++++++|+|+|+|++.+++.+++.++++.|++
T Consensus 332 v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i 403 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 403 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=9.4e-40 Score=311.32 Aligned_cols=340 Identities=61% Similarity=0.940 Sum_probs=314.2
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHh-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
++.+++.+.++++..+..|+..|+++++...++..+.++.. |++|.|+++|++++++.++..|+++|.+++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999999875446677778888 99999999999983399999999999999998888888
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|++++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999998899999999999999999955678999999999999999876
Q ss_pred -CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 234 -~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
+........+++|.|+.++.++|+.++..++|+|.+++...++....+...|+++.|+.++.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 6656666689999999999999999999999999999998877788888999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 392 (417)
+.+.+...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+|
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 999998888888999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHhcCcc
Q 014864 393 AISNATSGGTHEQIKYEHTFCTI 415 (417)
Q Consensus 393 ~L~nl~~~~~~~~~~~l~~~g~i 415 (417)
+|+|++..++++++.++++.|++
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCH
Confidence 99999988788888888877654
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-40 Score=325.23 Aligned_cols=334 Identities=15% Similarity=0.137 Sum_probs=290.5
Q ss_pred HHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHH-HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch-
Q 014864 75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE- 150 (417)
Q Consensus 75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~- 150 (417)
++.++++|.++ |++.+..|++.|..+... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+|++.++++
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence 57788888887 899999999999999543 34444444 6899999999999988 89999999999999986521
Q ss_pred ----------------------------h---HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh
Q 014864 151 ----------------------------H---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (417)
Q Consensus 151 ----------------------------~---~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~ 199 (417)
. .+.+++.|++|.|+.++.++++.++++|+|+|+||+.+ +.+|..+++
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~ 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQ 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 1 27889999999999999999999999999999999976 459999999
Q ss_pred cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-CCCCh--hhhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCCh
Q 014864 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTN 275 (417)
Q Consensus 200 ~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~ 275 (417)
.|++++|+.++ .+.+...++.|+|+|.+|+... |...+ ....+++|.|+.+|.+++. ..+..++|+|.||+..++
T Consensus 535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 99999999999 6677889999999999999764 22111 1235689999999986633 445789999999999988
Q ss_pred HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (417)
+..+.+++.|+++.|+.++.++++.++.+|+++|+|++.+++.+...+...|.++.|+.++.++ +..++++|+|+|+|+
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanL 692 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAII 692 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999998776555432368999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHH-CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCcc
Q 014864 356 TAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCTI 415 (417)
Q Consensus 356 ~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~i 415 (417)
+.+++.+++.+++ .|+++.|++++.++++++++.|+|+|.|++.+ +.++..++++.|++
T Consensus 693 t~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i 752 (810)
T 3now_A 693 TSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIM 752 (810)
T ss_dssp HHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHH
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCH
Confidence 9988999999998 89999999999999999999999999999985 67899999999876
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.5e-39 Score=311.76 Aligned_cols=339 Identities=26% Similarity=0.395 Sum_probs=300.4
Q ss_pred cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.+|.|+++|++ +++.+|..|+++|.+++++. ++....+++.|++|.|+.+|++++ ++++..|+|+|+|++.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 689999999975 56899999999999998875 677888999999999999999998 999999999999999988999
Q ss_pred HHHHHhCCChhHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864 152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l 226 (417)
+..+.+.|+++.|+.++.+++ ..+...++|++.|++.+...........|+++.|++++ .+.+++++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998644 46788999999999987655555555677899999999 888999999999999
Q ss_pred hhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHH
Q 014864 227 SNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA 305 (417)
Q Consensus 227 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a 305 (417)
++|+...+... .....+++|.|+.++.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 99998753322 23347899999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCH
Q 014864 306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF 384 (417)
Q Consensus 306 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~ 384 (417)
+++|+|++.++..+...+.+.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|++.|+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999997 688899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC----CCHHHHHHHH-hcCcc
Q 014864 385 DIKKEAAWAISNATSG----GTHEQIKYEH-TFCTI 415 (417)
Q Consensus 385 ~v~~~a~~~L~nl~~~----~~~~~~~~l~-~~g~i 415 (417)
+++..++++|.|+... +..+....++ +.||+
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 451 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 451 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence 9999999999999753 2344444444 55553
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-38 Score=309.27 Aligned_cols=340 Identities=26% Similarity=0.392 Sum_probs=301.9
Q ss_pred ccCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
.+.+|.|++.|.. +++.+|..|+++|.+++++. +.....+++.|++|.|+.+|.+++ ++++..|+|+|+|++.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 3689999999975 66899999999999998775 566778999999999999999999 99999999999999998899
Q ss_pred hHHHHHhCCChhHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHH
Q 014864 151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (417)
.+..+++.|+++.|+.+|..++ ..+...++|++++++.+...........|+++.|+.++ .+.++.++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999998643 46788999999999987655555556677899999999 88899999999999
Q ss_pred HhhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHH
Q 014864 226 LSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (417)
Q Consensus 226 l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~ 304 (417)
|++++...+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 999998753322 2334789999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCC
Q 014864 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAE 383 (417)
Q Consensus 305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~ 383 (417)
|+++|+|++.+++.....+++.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 99999999999999997 67889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCC----CCHHHHHHH-HhcCcc
Q 014864 384 FDIKKEAAWAISNATSG----GTHEQIKYE-HTFCTI 415 (417)
Q Consensus 384 ~~v~~~a~~~L~nl~~~----~~~~~~~~l-~~~g~i 415 (417)
++++..++++|.|+... +..+....+ .+.||+
T Consensus 434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 99999999999999753 244544444 456664
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=9.7e-40 Score=304.87 Aligned_cols=336 Identities=18% Similarity=0.173 Sum_probs=267.7
Q ss_pred hccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcH-HHHHHhCCHHHHHHhhcCCCC-----------HHHHHHHH
Q 014864 71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFEAA 138 (417)
Q Consensus 71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~-----------~~~~~~a~ 138 (417)
+++.++.++..+.++|+.. .++++++.+.+++. ..+++.|++|.|+++|+..+. ++++++|+
T Consensus 30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 4567889999998888763 34444443334445 779999999999999997542 79999999
Q ss_pred HHHHHHhCCCchhHHHHHhCCCh----------hHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchHH
Q 014864 139 WALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRCR 194 (417)
Q Consensus 139 ~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~ll~~~~--~~-----i~~-------~a~~~L~nl~~~~~~~~ 194 (417)
|+|+||+.++++.+....+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++|
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 99999999999999998888888 66777777542 12 444 999999999776 7799
Q ss_pred HHHHhcCCHHHHHHHhcC----------CCchhHHHHHHHHHhhhhcCCCCCChhh--hhchHHHHHHhhcCCChHHHHH
Q 014864 195 DLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTD 262 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~v~~~ 262 (417)
+.+.+.|++++|+.++.. +.++.+++.|+|+|.||+.+++...... ..+++|.|+.+|.+++++++..
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 262 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence 999999999999999941 2357789999999999998864333222 3566999999999999999999
Q ss_pred HHHHHHHhccC-ChHHHHHHHHcCChHHHHhhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhhcCC
Q 014864 263 ACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGN 339 (417)
Q Consensus 263 a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~ 339 (417)
++|+|.+|+.. +++....+.+.|+++.|+.+| .+.++.++..|+.+|+||+.+++.....+. ..|+++.|+.+|.++
T Consensus 263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~ 342 (458)
T 3nmz_A 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 342 (458)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 99999999985 566778889999999999975 566889999999999999986654444455 789999999999987
Q ss_pred Cch----hHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 340 YKK----SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 340 ~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
++ .+++.|+|+|.|++. +++++++.+.+.|+++.|+.+|.+++.+++++|+|+|+|++.+ +.++...+++.
T Consensus 343 -~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~ 420 (458)
T 3nmz_A 343 -SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM 420 (458)
T ss_dssp -CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred -CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 43 499999999999996 7899999999999999999999999999999999999999875 78999999999
Q ss_pred Ccc
Q 014864 413 CTI 415 (417)
Q Consensus 413 g~i 415 (417)
|++
T Consensus 421 G~I 423 (458)
T 3nmz_A 421 GAV 423 (458)
T ss_dssp THH
T ss_pred CCH
Confidence 875
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=288.56 Aligned_cols=327 Identities=18% Similarity=0.172 Sum_probs=277.7
Q ss_pred hccCHHHHHhhhcCC------------ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCH----------HHHHHhhcCC
Q 014864 71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE 128 (417)
Q Consensus 71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i----------~~Lv~lL~~~ 128 (417)
+-+.+|.|+++|+.. +++.++.|+++|.+++++. ++..+...+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 348899999999963 3699999999999999987 6667777777777 7778888765
Q ss_pred C-CHH-----HHH-------HHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-----------CCHHHHHHHHHHHH
Q 014864 129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG 184 (417)
Q Consensus 129 ~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~ 184 (417)
. ..+ ++. +|+|+|.|++.+ ++++..+++.|+++.|+.+|.. .++.++..|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 433 999999999775 9999999999999999999941 34678999999999
Q ss_pred HhhCCCchHHHHHHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-C-CCChhhhhchHHHHHHhh-cCCChHHH
Q 014864 185 NIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVL 260 (417)
Q Consensus 185 nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~~~~v~ 260 (417)
||+.+++..+..+.. .|++++|+.+| .+.+++++..++|+|+||+... + ........+++|.|+.+| .+.++.++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 999988777777654 55699999999 6889999999999999999852 2 223333478999999975 55688999
Q ss_pred HHHHHHHHHhccCChHHHHHHH-HcCChHHHHhhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCChHHH
Q 014864 261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL 332 (417)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L 332 (417)
..++.+|++|+.+.++....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. ++++..+.+.+.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999985544444455 78999999999998754 489999999999997 788888989999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 333 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
+.+|.++ +..++++|+|+|+|++.++++++..+++.|+++.|+++|.+++.++++.|+|+|.||+...
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999998 9999999999999999888999999999999999999999999999999999999999874
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.3e-36 Score=293.58 Aligned_cols=324 Identities=26% Similarity=0.371 Sum_probs=293.7
Q ss_pred cCHHHHHhhhcCCC-hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.++.|++.|.+++ +.++..|+++|.+++... ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 68999999999876 999999999999998754 566777889999999999999988 999999999999999988888
Q ss_pred HHHHHhCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
+..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......|+++.|+.++ .+.++.++..++|+|++++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 5789999999999999999876433 3345688999999999 7889999999999999999
Q ss_pred cCCCCC-ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-ChhhHHHHHHH
Q 014864 231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT 308 (417)
Q Consensus 231 ~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~v~~~a~~~ 308 (417)
...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 775322 2223368999999999999999999999999999998888888899999999999999998 89999999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK 387 (417)
Q Consensus 309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 387 (417)
|+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+++++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999999988888899999999999999998 999999999999999974 78999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014864 388 KEAAWAISNATSGG 401 (417)
Q Consensus 388 ~~a~~~L~nl~~~~ 401 (417)
..|+++|.+++..+
T Consensus 432 ~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 432 TVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.6e-36 Score=292.16 Aligned_cols=325 Identities=26% Similarity=0.358 Sum_probs=292.0
Q ss_pred cCHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.++.+++.|.++ ++.++..|+++|.+++... +.....++..|+++.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6899999999987 8999999999999998754 456677889999999999999888 999999999999999988889
Q ss_pred HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
+..+...|+++.|+.++.+.+..++..++|+|++++.+...........++++.|+.++ .+.++.++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999976522334556688999999999 77789999999999999998
Q ss_pred CCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864 232 GKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (417)
Q Consensus 232 ~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~ 310 (417)
..+... .....+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 753222 2223589999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNR--EQIQAVIEANIIGPLVALLENAEFDIK 387 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~~l~~~~~~v~ 387 (417)
+++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++. +.+ +....+++.|+++.|+.++.+++++++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99999988888889999999999999988 99999999999999997 455 788889999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014864 388 KEAAWAISNATSGG 401 (417)
Q Consensus 388 ~~a~~~L~nl~~~~ 401 (417)
..|+++|.+++..+
T Consensus 446 ~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 446 EVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.9e-36 Score=288.55 Aligned_cols=324 Identities=27% Similarity=0.358 Sum_probs=289.6
Q ss_pred cCHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.++.+++.|.++ ++.++..|++.+.+++... .+....+++.|++|.|+++|++++ +.++..|+++|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999998 8999999999999998654 455667888999999999999988 999999999999999988888
Q ss_pred HHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
+..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +.....+ ..++++.|+.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999765 3322222 378999999999 778899999999999999
Q ss_pred hcCCCC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864 230 CRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (417)
Q Consensus 230 ~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~ 308 (417)
+...+. .......+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 986522 2222336889999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHH
Q 014864 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK 387 (417)
Q Consensus 309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 387 (417)
|++++.+++...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999999988888889999999999999998 999999999999999974 78888889999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014864 388 KEAAWAISNATSGG 401 (417)
Q Consensus 388 ~~a~~~L~nl~~~~ 401 (417)
..|+++|.+++..+
T Consensus 379 ~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 379 QVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.9e-36 Score=286.07 Aligned_cols=321 Identities=18% Similarity=0.209 Sum_probs=269.8
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.++.+++.|.++++..|..|+..|++++..+ ++....+++.|++|.|+++|++++ +.++..|+|+|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5799999999999999999999999987542 444558999999999999999988 99999999999999998899999
Q ss_pred HHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc--------CC-------Cchh
Q 014864 154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS 217 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--------~~-------~~~~ 217 (417)
.+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++. .. .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999988 568888888 99999999992 11 3567
Q ss_pred HHHHHHHHHhhhhcCCCCCChhhh-h-chHHHHHHhhcC-----------------------------------------
Q 014864 218 MLRNATWTLSNFCRGKPQPPFDQV-S-PALPALAHLIHS----------------------------------------- 254 (417)
Q Consensus 218 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~----------------------------------------- 254 (417)
+++.++|+|+||+.. +....... . |++|.|+.+|.+
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999986 22211222 2 666666655532
Q ss_pred ----------------------------------------------------------CChHHHHHHHHHHHHhccCChH
Q 014864 255 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND 276 (417)
Q Consensus 255 ----------------------------------------------------------~~~~v~~~a~~~l~~l~~~~~~ 276 (417)
.++.+++.++|+|++++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 1356777789999999976532
Q ss_pred H---H-HHHH-HcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-----chhHHH
Q 014864 277 K---I-QAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----KKSIKK 346 (417)
Q Consensus 277 ~---~-~~~~-~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----~~~v~~ 346 (417)
. . +.++ +.|+++.|+.+|.+++..++..|+++|+|++.+. ....++..|+++.|+.+|.++. +.++..
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 1 2 3344 6899999999999999999999999999999754 3445667789999999999862 236888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCC
Q 014864 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~ 401 (417)
.++++|+|+..+++++...+.+.|+++.|++++.++ +.++++.|+|+|.|+....
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999999999998888899999999999999999999 9999999999999998753
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=7.5e-35 Score=277.67 Aligned_cols=331 Identities=19% Similarity=0.187 Sum_probs=270.8
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC-Cchh
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~ 151 (417)
..++.++++|.++++.+|..|+..|.+++... +++...+++.|+||.|+++|++++ ++++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 57999999999999999999999999997654 677888999999999999999998 99999999999999996 5899
Q ss_pred HHHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc-----------------CC
Q 014864 152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ 213 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----------------~~ 213 (417)
+..+++.|+|+.|+.+|.+ .+.+++++++++|+||+.. +..+..+.+ +++++|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999996 6889999999999999985 457777775 57999999761 12
Q ss_pred CchhHHHHHHHHHhhhhcCCCC-CChhh----------------------------------------------------
Q 014864 214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ---------------------------------------------------- 240 (417)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~~~-~~~~~---------------------------------------------------- 240 (417)
.++.++.+++++|.||+...+. .....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2567777777777777654311 00000
Q ss_pred ----------------------hhchHHHHHHhhc-CCChHHHHHHHHHHHHhccCChH---HHH-HHHHcCChHHHHhh
Q 014864 241 ----------------------VSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTND---KIQ-AVIEAGVFPRLAEF 293 (417)
Q Consensus 241 ----------------------~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~---~~~-~~~~~~~~~~L~~~ 293 (417)
..++++.|+.+|. +.++.+++.++|+|.||+.+... ..+ .+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0123455666774 45788899999999999876521 222 34456889999999
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 014864 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------KKSIKKEACWTVSNITAGNREQIQAV 366 (417)
Q Consensus 294 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l 366 (417)
|.+++..++..|+++|+|++.+.... .++..|++|.|+.+|.++. ...+...|||+|+|++.+++++.+.+
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999877543 3568899999999998762 35788999999999999999999999
Q ss_pred HHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q 014864 367 IEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKYEHT 411 (417)
Q Consensus 367 ~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~l~~ 411 (417)
++.|+++.|+.++.++ .+.+++.|+|+|+|+..+ .+....+-+
T Consensus 442 ~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~--~elr~~~kk 486 (584)
T 3l6x_A 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY--KELRKPLEK 486 (584)
T ss_dssp HHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS--HHHHHHHHT
T ss_pred HHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC--HHHHHHHHH
Confidence 9999999999999876 789999999999999884 454454444
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-35 Score=291.81 Aligned_cols=325 Identities=13% Similarity=0.089 Sum_probs=279.5
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCC----------------------------c---HHHHHHhCCHHHH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP----------------------------P---IEEVIRSGVVPRF 121 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~----------------------------~---~~~~~~~g~i~~L 121 (417)
+.+|.|+++|+++++.+++.|+++|.++..+.+.+ . ++.+++.|++|.|
T Consensus 421 g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L 500 (810)
T 3now_A 421 ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL 500 (810)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence 57899999999999999999999999998753111 1 2678899999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH--HHh
Q 014864 122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL--VLS 199 (417)
Q Consensus 122 v~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~--~~~ 199 (417)
+.+|++++ +.++.+|+|+|+|++. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+....... ...
T Consensus 501 V~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 501 CALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 99999988 9999999999999996 4789999999999999999999999999999999999998643221100 012
Q ss_pred cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH
Q 014864 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278 (417)
Q Consensus 200 ~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 278 (417)
.|++++|+.+|..+.+...+..++|+|+||+..++. .......+++|.|+.++.++++.++..++++|+|++.+++..
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~- 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI- 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence 469999999994333445567899999999998532 223334789999999999999999999999999999876644
Q ss_pred HHHHH-cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 279 QAVIE-AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 279 ~~~~~-~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
..++. .|.++.|+.++.+++..++..|+++|+|++.+++.+.+.+++ .|+++.|+.++.++ +..+++.|+|+|+|++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 44454 689999999999999999999999999999988888888998 89999999999999 9999999999999999
Q ss_pred cCCHHHHHHHHHCCCHHHHHHHhccC---CHHHHHHHHHHHHHhhCCC
Q 014864 357 AGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~~L~nl~~~~ 401 (417)
.+++++...+.+.|+++.|+++++.. +.++.+.|..+|.++...|
T Consensus 737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 98899999999999999999999755 6899999999999998765
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.4e-33 Score=269.61 Aligned_cols=324 Identities=19% Similarity=0.234 Sum_probs=274.9
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.++.+++.|.++++.++..|++.|.++.... +.....+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999999999999998764 456777889999999999999988 8999999999999999889999
Q ss_pred HHHHhCCChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
..+.+.|+++.|+.++.+ .+...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 999999999999999986 45667888999999999754 5788999999999999999 66689999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC--CChhhHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV 309 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L 309 (417)
..+.. ....+++|.|+.++.+++++++..++|+|++++.++++....+.+.|+++.|+.++.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 3456899999999999999999999999999999888888889999999999999975 3478999999999
Q ss_pred HHhhcCChH---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (417)
Q Consensus 310 ~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 386 (417)
+|++.+++. ....+.+.|+++.|..+|.++.++.+++.++|+|+|++.++.. ...+.+.|+++.|++++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999987543 3456788999999999999883469999999999999986444 477889999999999999989999
Q ss_pred HHHHHHHHHH--hhCCCCH
Q 014864 387 KKEAAWAISN--ATSGGTH 403 (417)
Q Consensus 387 ~~~a~~~L~n--l~~~~~~ 403 (417)
|++|+|+++| +..++..
T Consensus 414 ~~~a~~~l~n~~~~~~~~~ 432 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRM 432 (529)
T ss_dssp C-----------CBTTBCH
T ss_pred HHHHhcccCchhhhccccH
Confidence 9999998888 4443333
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.9e-33 Score=266.66 Aligned_cols=292 Identities=19% Similarity=0.206 Sum_probs=244.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 196 (417)
.+|.|+.+|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999887888889999999999999999999999999999999999988889999
Q ss_pred HHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc--------C--------CChHHH
Q 014864 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL 260 (417)
Q Consensus 197 ~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~~~~v~ 260 (417)
+.+.|++++|+++|..+.++++++.++|+|+||+..+. .......+++|.|+.++. + .++++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-hHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999547899999999999999999843 333333499999999993 2 246677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHc-CChHHHHhhcCC------CChhhHHHHHHHHHHhhcCC-----------------
Q 014864 261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGD----------------- 316 (417)
Q Consensus 261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~----------------- 316 (417)
..++|+|.||+.+ ++..+.+.+. |+++.|+.+|.+ .+..+...++.+|.|++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999987 6777888887 999999999985 45678888988899886321
Q ss_pred ---------------------------------hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 014864 317 ---------------------------------DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-- 361 (417)
Q Consensus 317 ---------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-- 361 (417)
+...+.+++.++++.++.+|.++.++.+++.|+|+|+|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112233455677899999998775789999999999999986532
Q ss_pred -HH-HHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864 362 -QI-QAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTFCT 414 (417)
Q Consensus 362 -~~-~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~g~ 414 (417)
.+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.. ++..+++..|+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~ 372 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQV 372 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHT
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhh
Confidence 23 4455 689999999999999999999999999999885 24455555443
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=271.70 Aligned_cols=326 Identities=19% Similarity=0.235 Sum_probs=275.0
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.++.+++.|.++++.++..|+.+|.+++... ++....+.+.|+++.|+.+|++++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 67899999999999999999999999998775 566777889999999999999988 8888889999999999889999
Q ss_pred HHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999874 467889999999999965 45789999999999999999 66789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV 309 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L 309 (417)
..+. .....+++|.|+.++.+++++++..++|+|++|+.+++.....+.+.|+++.|+.++.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 7543 234468999999999999999999999999999998888888899999999999999864 279999999999
Q ss_pred HHhhcCChH--HH-HHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864 310 GNIVTGDDM--QT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (417)
Q Consensus 310 ~~l~~~~~~--~~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 386 (417)
++++...+. .. ..+.+.|+++.|+.+|.++.++.+++.|+|+|+|++.+...+ +.+++.|+++.|+++|.+.++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhh
Confidence 999975442 22 337788999999999998734799999999999999875544 78889999999999999877766
Q ss_pred HHHHHHHHHH--hhCCCCHHH
Q 014864 387 KKEAAWAISN--ATSGGTHEQ 405 (417)
Q Consensus 387 ~~~a~~~L~n--l~~~~~~~~ 405 (417)
|++|+|+++| ++.+++.++
T Consensus 411 r~~a~~al~n~~~~~~~~~~~ 431 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEE 431 (644)
T ss_dssp TTC----------CCSSCHHH
T ss_pred hhHhhhccccchhcccccHHH
Confidence 6666666665 444333333
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.9e-33 Score=253.93 Aligned_cols=270 Identities=20% Similarity=0.180 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchHHHHHHh
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLS 199 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~ 199 (417)
...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|.. .++.++..|+|+|.||+.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566899999999986 8999999999999999999942 34779999999999999888777777754
Q ss_pred -cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-C-CCChhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh
Q 014864 200 -QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 200 -~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
.|++++|+.+| .+++++++..++|+|.||+... + ........+++|.|+.+| .+.+++++..++++|.+|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 55699999999 7889999999999999999852 2 223334478999999975 66789999999999999998665
Q ss_pred HHHHHHH-HcCChHHHHhhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864 276 DKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (417)
Q Consensus 276 ~~~~~~~-~~~~~~~L~~~l~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 347 (417)
+....+. ..|+++.|+.+|.++++ .++..|+++|.|++. ++++.++.+.+.|+++.|+.+|.++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5545555 78999999999997754 489999999999997 7888888899999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCH
Q 014864 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 403 (417)
|+|+|+|++.+++++++.+++.|++|.|+++|.+++.++++.|+|+|.||+.....
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988899999999999999999999999999999999999999998543
No 21
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.3e-33 Score=254.57 Aligned_cols=275 Identities=18% Similarity=0.147 Sum_probs=238.7
Q ss_pred ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHhCCCchhHHHH
Q 014864 86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIASGTSEHTKVV 155 (417)
Q Consensus 86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~i 155 (417)
+...+..|+++|.++... ++..+.+++.|+++.|+.+|..+ .++.++..|+|+|.|++.+++..+..+
T Consensus 45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345556899999999643 67888899999999999999521 136899999999999999877777777
Q ss_pred Hh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 156 ~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.. .|+||.|+.+|.++++++++.|+|+|+||+.. ++.++..+.+.|++++|+++|..+.+..+++.++++|+||+...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 54 46699999999999999999999999999985 66789999999999999998757778899999999999999843
Q ss_pred -CCCChhh-hhchHHHHHHhhcCCCh----HHHHHHHHHHHHhcc---CChHHHHHHHHcCChHHHHhhcCCCChhhHHH
Q 014864 234 -PQPPFDQ-VSPALPALAHLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304 (417)
Q Consensus 234 -~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~ 304 (417)
....... ..+++|.|+.+|.++++ +++..++|+|.+|+. ..++..+.+.+.|+++.|+.+|.+++..++..
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 2222333 47999999999987654 599999999999997 67778888999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (417)
Q Consensus 305 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (417)
|+++|+|++.+++++...+.+.|++|.|+.+++++ ++.+++.|+|+|.|++.+++..+
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999998999999999999999999999998 99999999999999999766543
No 22
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1e-31 Score=256.18 Aligned_cols=296 Identities=20% Similarity=0.205 Sum_probs=243.6
Q ss_pred HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-Cch
Q 014864 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR 192 (417)
Q Consensus 114 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~ 192 (417)
..+.+|.|+.+|.+++ ++++..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+|+|+||+.+ ++.
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4667999999999988 99999999999999998899999999999999999999999999999999999999985 678
Q ss_pred HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc------------------C
Q 014864 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S 254 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~------------------~ 254 (417)
++..+.+.|++++|+.+|....+..+++.++++|++|+..+ .....+..+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999965578899999999999999864 3333444678999999771 2
Q ss_pred CChHHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHhhcC--------------------------------------
Q 014864 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM-------------------------------------- 295 (417)
Q Consensus 255 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l~-------------------------------------- 295 (417)
++++++.+++++|.||+..+++..+.+++. |+++.|+.++.
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999998876655555553 33444444432
Q ss_pred ------------------------------------CCChhhHHHHHHHHHHhhcCChHH----HHHHHHcCChHHHHHh
Q 014864 296 ------------------------------------HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL 335 (417)
Q Consensus 296 ------------------------------------~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~L~~l 335 (417)
+.++.+++.|+++|.|++.+.... ...+.+.+++|.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 223556677888888888765322 1223456889999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--------CHHHHHHHHHHHHHhhCCCCHHHHH
Q 014864 336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--------EFDIKKEAAWAISNATSGGTHEQIK 407 (417)
Q Consensus 336 l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--------~~~v~~~a~~~L~nl~~~~~~~~~~ 407 (417)
|.++ +..+++.|+|+|+|++.+.. .+.++..|++|.|+.+|.++ ..++...|+++|+|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 99999999999999998643 23455779999999999876 367899999999999976 789999
Q ss_pred HHHhcCcc
Q 014864 408 YEHTFCTI 415 (417)
Q Consensus 408 ~l~~~g~i 415 (417)
.+++.|||
T Consensus 440 ~I~~~g~I 447 (584)
T 3l6x_A 440 KLRETQGI 447 (584)
T ss_dssp HHHHTTHH
T ss_pred HHHHCCCh
Confidence 99999886
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.8e-31 Score=259.36 Aligned_cols=334 Identities=16% Similarity=0.158 Sum_probs=287.0
Q ss_pred cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.++.+++.|.+ +++..+..|+..|+++... +++...+.+.|++|.|+++|++++ +.++..|+++|.+++.+++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468999999975 5899999999999998654 457777889999999999999988 999999999999999987778
Q ss_pred HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
+..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++....+...+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888899999999999999999999999999999998888999999999999999999766677788889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~ 311 (417)
.+.........++++.|+.++.++++.++..++|+|.+++....... ...++++.|+.++.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64433334447899999999999999999999999999997654211 123678999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHCCCHHHHHHHhccCC-HHH
Q 014864 312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI 386 (417)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~-~~v 386 (417)
++.+++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++ ....+.+.|+++.|+++|.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888888899999999999999763 1479999999999999986433 4567788999999999999876 699
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864 387 KKEAAWAISNATSGGTHEQIKYEHTFCT 414 (417)
Q Consensus 387 ~~~a~~~L~nl~~~~~~~~~~~l~~~g~ 414 (417)
++.++|+|+|++.+. +....+.+.|+
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~ 398 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGA 398 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCC
Confidence 999999999999853 23356666654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.98 E-value=2.2e-30 Score=260.97 Aligned_cols=317 Identities=19% Similarity=0.242 Sum_probs=269.1
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.++.|++.|.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 67899999999999999999999999998764 556666778999999999999987 8999999999999999888999
Q ss_pred HHHHhCCChhHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
..+.+.|+++.|+.++.+.+ ...++.++.+|.+++... ..+..+++.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998754 567778999999999754 4788899999999999999 67788999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCC-C-hhhHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-S-PSVLIPALRTV 309 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~-~-~~v~~~a~~~L 309 (417)
..+. .....+++|.|+.++.+.++.++..++|+|++|+.++++....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 233478999999999999999999999999999999888888899999999999999863 3 48999999999
Q ss_pred HHhhcCChH---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHH
Q 014864 310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386 (417)
Q Consensus 310 ~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 386 (417)
++|+..+.. ....+...++++.|+.+|.++..+.+++.|+|+|+|++.++ .....+.+.|+++.|+++|.++++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 999876543 23457789999999999998834599999999999999864 44578889999999999998766555
Q ss_pred HHHHHHHHHH
Q 014864 387 KKEAAWAISN 396 (417)
Q Consensus 387 ~~~a~~~L~n 396 (417)
+++|+|+++|
T Consensus 547 ~~~aa~al~n 556 (780)
T 2z6g_A 547 QRRTSMGGTQ 556 (780)
T ss_dssp HHTTC-----
T ss_pred HHHHhhcccc
Confidence 5544444433
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=257.60 Aligned_cols=334 Identities=16% Similarity=0.154 Sum_probs=285.0
Q ss_pred cCHHHHHhhhcCC-ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.++.+++.|.++ ++.++..|+..|+++... ......+.+.|+++.|+++|++++ +.++..|+++|.+++.+.+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4589999999874 899999999999987544 447777889999999999999988 999999999999999987778
Q ss_pred HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
+..+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999988888999999999999999999666667888999999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~ 311 (417)
...........++++.|+.++.+++..++..++|+|.+++...... ....++++.|+.++.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444444789999999999999999999999999998764321 1112679999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCH--HHH-HHHHHCCCHHHHHHHhccCC-HHH
Q 014864 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR--EQI-QAVIEANIIGPLVALLENAE-FDI 386 (417)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~--~~~-~~l~~~~~i~~L~~~l~~~~-~~v 386 (417)
++.+++.....+.+.|+++.|+.++.+.. .+.++..|+++|+|++..++ +.. ..+.+.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 99998888888999999999999998742 37999999999999997433 233 34778999999999999874 799
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864 387 KKEAAWAISNATSGGTHEQIKYEHTFCT 414 (417)
Q Consensus 387 ~~~a~~~L~nl~~~~~~~~~~~l~~~g~ 414 (417)
++.|+|+|+|++.+. +....+++.|+
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~ 395 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGA 395 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCC
Confidence 999999999999853 22366666654
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=2.1e-29 Score=220.58 Aligned_cols=242 Identities=32% Similarity=0.499 Sum_probs=219.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
|.++.|+++|.+++ ++++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999998 99999999999999998888999999999999999999999999999999999999998888888
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
.+.+.|+++.++.++ .+++++++..++++|++++...+
T Consensus 81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~ 118 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD 118 (252)
T ss_dssp HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence 887777776666665 34456667777777777776666
Q ss_pred HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (417)
+....+.+.|+++.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|+
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 6677788899999999999999999999999999999999988888899999999999999988 999999999999999
Q ss_pred hcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 356 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
+.++++..+.+.+.|+++.|++++.+++++++..|+|+|.|++...
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 9988999999999999999999999999999999999999999875
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=3.5e-30 Score=259.45 Aligned_cols=334 Identities=16% Similarity=0.158 Sum_probs=284.0
Q ss_pred cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh
Q 014864 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151 (417)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 151 (417)
+.++.|++.|.+ +++.++..|+.+|+++... ..+...+.+.|+++.|+.+|++++ +.++..|+++|.+++.+++..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 357888999975 4899999999999997543 455777889999999999999998 999999999999999987888
Q ss_pred HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++...........++.++.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888999999999999999999665566777889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~ 311 (417)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6433333444789999999999999999999999999998765321 1123578999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHCCCHHHHHHHhccCC-HHH
Q 014864 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI 386 (417)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~-~~v 386 (417)
++.+++.....+.+.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+...++++.|+++|.+++ +.+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999998888889999999999999986313 48999999999999875433 2346778999999999999876 499
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHhcCc
Q 014864 387 KKEAAWAISNATSGGTHEQIKYEHTFCT 414 (417)
Q Consensus 387 ~~~a~~~L~nl~~~~~~~~~~~l~~~g~ 414 (417)
++.|+|+|+|++.+ .+....+.+.|+
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~ 531 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGA 531 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCC
Confidence 99999999999974 344466666654
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=1.3e-29 Score=222.00 Aligned_cols=239 Identities=36% Similarity=0.551 Sum_probs=220.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
...+.++..|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 35889999999998 89999999999887776678888999999999999999999999999999999999998888999
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 274 (417)
.+.+.|+++.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6688999999999999999886444 34445789999999999999999999999999999988
Q ss_pred hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (417)
Q Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (417)
++....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|..++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999998888899999999999999998 99999999999999
Q ss_pred Hhc
Q 014864 355 ITA 357 (417)
Q Consensus 355 l~~ 357 (417)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=3e-28 Score=213.31 Aligned_cols=241 Identities=31% Similarity=0.457 Sum_probs=217.8
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.++.+++.|.++++.++..|++.|.+++... .+....+++.|+++.|+++|++++ +.++..|+++|++++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 46899999999999999999999999998764 457778999999999999999998 9999999999999999889999
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
..+.+.|+++.|+.++.++++.++..|+++|++++...+..+..+.+.|+++.|++++ .
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~-------------------- 138 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-T-------------------- 138 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-T--------------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-c--------------------
Confidence 9999999999999999999999999999999999988887888777777777777777 2
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
++++.++..++++|++++...++..+.+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus 139 ---------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 139 ---------------------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp ---------------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 25667778888888888877777777888999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
+.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|++..
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcC
Confidence 998888888899999999999999998 999999999999999864
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=6.2e-29 Score=217.75 Aligned_cols=239 Identities=36% Similarity=0.520 Sum_probs=218.3
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCC-CC
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PP 237 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~-~~ 237 (417)
...+.++..|.+++++++..|+++|.++....+..+..+.+.|+++.|+.++ .++++.++..++|+|.+++...+. ..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5688999999999999999999999887766666788899999999999999 667799999999999999986532 23
Q ss_pred hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
.....+++|.|+.++.++++.++..++|+|++++...+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 33347899999999999999999999999999999888776789999999999999999999999999999999999998
Q ss_pred HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
.....+.+.|+++.|+.++.++ ++.++..|+|+|+|++.++++....+.+.|+++.|+.++.+++++++..|+|+|.|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888889999999999999998 999999999999999998899999999999999999999999999999999999999
Q ss_pred hC
Q 014864 398 TS 399 (417)
Q Consensus 398 ~~ 399 (417)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-25 Score=214.94 Aligned_cols=320 Identities=10% Similarity=0.124 Sum_probs=256.2
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHH-HhCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhCCCch--
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGTSE-- 150 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~~~-- 150 (417)
.+.+.+.|.+++.+.+..|++.|..+... .+....+. +.|+++.|++++++ .+ ..+.+.++.+|.|++...+.
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccc
Confidence 46677777777777799999999988432 33444444 55679999999996 55 78999999999999985431
Q ss_pred ------------------------------------hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864 151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (417)
Q Consensus 151 ------------------------------------~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (417)
.+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +.+|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 345678889999999999999999999999999999977 5699
Q ss_pred HHHHhcCCHHHHHHHhcCCCch--hHHHHHHHHHhhhhcCC-CCCChh--hhhchHHHHHHhhcC-CCh-----------
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGK-PQPPFD--QVSPALPALAHLIHS-NDD----------- 257 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~--~~~~~a~~~l~~l~~~~-~~~~~~--~~~~~l~~L~~ll~~-~~~----------- 257 (417)
..++++|++++|+.++...++. ..+..|+++|.+++... |...+. ...+++|.|+.+|.. ++.
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999554433 38899999999999653 211110 114899999999983 221
Q ss_pred --HHHHHHHHHHHHhccCCh----HHHHHHHHc-CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc----
Q 014864 258 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---- 326 (417)
Q Consensus 258 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---- 326 (417)
--...|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 126689999999998873 334567774 899999999999999999999999999998555321223322
Q ss_pred --CChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHhcc--CCHHHHHHHHHHHHHhhC
Q 014864 327 --QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLEN--AEFDIKKEAAWAISNATS 399 (417)
Q Consensus 327 --~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~ 399 (417)
+.++.|+.+++++ +..+|+.|+|+|+|++.+++...+.+++. ++++.+++++.+ ++.+++..++.++.|++.
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2378899999988 99999999999999988778888888876 799999999998 899999999999999996
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=2.1e-24 Score=183.39 Aligned_cols=201 Identities=36% Similarity=0.547 Sum_probs=176.2
Q ss_pred HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 014864 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192 (417)
Q Consensus 113 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 192 (417)
...|..+.|+.+|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 35678999999999998 99999999999999988899999999999999999999999999999999999999988888
Q ss_pred HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864 193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 272 (417)
.+..+.+.|+++.|+.++ ++ +++.++..++|+|++++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~-----------------------------------------~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL-SS-----------------------------------------PNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT-TC-----------------------------------------SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHH-cC-----------------------------------------CcHHHHHHHHHHHHHHHc
Confidence 888888888888877777 33 345556666666666666
Q ss_pred CChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
+.++....+++.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|..++.++ ++.+++.|+++|
T Consensus 126 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL 204 (210)
T 4db6_A 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEAL 204 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 6666667788899999999999999999999999999999999888888899999999999999998 999999999999
Q ss_pred HHHhc
Q 014864 353 SNITA 357 (417)
Q Consensus 353 ~nl~~ 357 (417)
.+++.
T Consensus 205 ~~l~~ 209 (210)
T 4db6_A 205 EKLQS 209 (210)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 99975
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=1.1e-24 Score=185.15 Aligned_cols=199 Identities=38% Similarity=0.543 Sum_probs=181.2
Q ss_pred hcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHH
Q 014864 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK 277 (417)
Q Consensus 199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 277 (417)
..|..+.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.+|.++++.++..++|+|++++.++++.
T Consensus 10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 456788999999 8889999999999999999765332 23344689999999999999999999999999999888888
Q ss_pred HHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 278 ~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
...+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.+++++ ++.++..|+|+|+|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 88899999999999999999999999999999999999998888899999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 358 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
++++....+.+.|+++.|++++.++++++++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 889899999999999999999999999999999999999975
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=3.5e-24 Score=189.23 Aligned_cols=226 Identities=14% Similarity=0.097 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHH
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~l 209 (417)
.+-+..|+..|.+++.. .++...+...|++|.|+. +|.++++.++..|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788999999999985 667788889999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHhhhhcCCCCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864 210 LNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (417)
Q Consensus 210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 288 (417)
+..+++..+++.|+|+|++++++.+... .....+++|.|+.+|.+++..++..++|+|++++.++++..+.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9656688999999999999999764322 333468999999999999999999999999999988888888999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc--CC---hHHHHHhhcCCC-chhHHHHHHHHHHHHhc
Q 014864 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QA---LPCLLNLLSGNY-KKSIKKEACWTVSNITA 357 (417)
Q Consensus 289 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~---l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~ 357 (417)
.|+.+|.++++.++..|+++|++++.+.+......... .+ +..-.+-+++.. ..++.+.+...+-++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998865443322211 11 112233344331 34566666666666654
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=3.2e-23 Score=183.08 Aligned_cols=185 Identities=13% Similarity=0.168 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH-hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc
Q 014864 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l 294 (417)
.+-+..|+..|.+++............|++|.|+. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45677888888888876433333344789999999 99999999999999999999999888888899999999999999
Q ss_pred CC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Q 014864 295 MH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373 (417)
Q Consensus 295 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 373 (417)
.+ ++..++..|+++|+|++.+++...+.+.+.|+++.|+.+|+++ ++.++..|+|+|++++.++++.++.+++.|+++
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 85 4789999999999999999998888899999999999999998 999999999999999998888999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 374 PLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 374 ~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
.|+.+|.+++++++..|+++|+|++...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999873
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=5.5e-23 Score=173.66 Aligned_cols=197 Identities=19% Similarity=0.150 Sum_probs=171.4
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864 117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (417)
.+|.|+++|.+++ + +++..|+++|.+++.+++..+..+.+.|+||.|+.+|.++++++++.|+|+|.||+.+++.++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc----------------CCChH
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE 258 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~~~~ 258 (417)
..+.+.|++++|+++|..+.+.++++.++.+|+||+..+... .....+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999955678999999999999999865333 3344668999988763 13678
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHhhcCC------CChhhHHHHHHHHHHhhcC
Q 014864 259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG 315 (417)
Q Consensus 259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~~l~~------~~~~v~~~a~~~L~~l~~~ 315 (417)
++.++.++|.||+..+++..+.+.+. |+++.|+.+++. .+.+.++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998877777778775 678999999874 2567889999999999865
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.1e-22 Score=191.54 Aligned_cols=325 Identities=14% Similarity=0.112 Sum_probs=246.8
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
++-|.+.+++ ..++..|+-.|+++.+....... .+ ....+.+..+|.+++ .+.+..|++.|..++.+ ++.+..
T Consensus 298 ~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl~-~~VKe~ 370 (778)
T 3opb_A 298 LQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSLK-ASVKIM 370 (778)
T ss_dssp HHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTTS-SHHHHH
T ss_pred HHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCC-HHHHHH
Confidence 3444555544 47788899999998765422211 11 125788999999877 66799999999999986 777777
Q ss_pred HHhC-CChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------HH
Q 014864 155 VIDH-GAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR--------------------------------------CR 194 (417)
Q Consensus 155 i~~~-g~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~--------------------------------------~~ 194 (417)
+++. |+++.|+.+++. .+..+...++.+|.|++...+. .+
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 7765 669999999995 7788999999999999864321 35
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChH---HHHHHHHHHHHhc
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSYLS 271 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---v~~~a~~~l~~l~ 271 (417)
..+.+.|+++.|+.++ .+.++.++..++|+|.+|+............|+++.|+.++.+.... .+..|+.+|.+++
T Consensus 451 ~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 451 KYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 6778999999999999 77889999999999999998755444555589999999999877543 8899999999998
Q ss_pred cCChHHHHHHHH----cCChHHHHhhcCC-CChh------------h-HHHHHHHHHHhhcCCh----HHHHHHHHc-CC
Q 014864 272 DGTNDKIQAVIE----AGVFPRLAEFLMH-PSPS------------V-LIPALRTVGNIVTGDD----MQTQCVIEY-QA 328 (417)
Q Consensus 272 ~~~~~~~~~~~~----~~~~~~L~~~l~~-~~~~------------v-~~~a~~~L~~l~~~~~----~~~~~~~~~-~~ 328 (417)
...+... ++. .|+++.|+.+|.. +... . +..|+.+|+|++..++ +....++.+ |+
T Consensus 530 is~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 530 IFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred hcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 5543322 221 2789999999983 2211 1 6689999999999873 335667775 99
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHCC------CHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEAN------IIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~------~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
++.|..++.++ +..+|+.|+|+++|++.. ++.+ +.+.+.+ -++.|+.+++.++.++|..|+|+|.|++..
T Consensus 608 ~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~- 684 (778)
T 3opb_A 608 WSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT- 684 (778)
T ss_dssp HHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-
Confidence 99999999998 999999999999999974 5443 3444322 378899999999999999999999999754
Q ss_pred CHHHHHHHHhc
Q 014864 402 THEQIKYEHTF 412 (417)
Q Consensus 402 ~~~~~~~l~~~ 412 (417)
++.....+++.
T Consensus 685 ~~~ia~~ll~~ 695 (778)
T 3opb_A 685 IPLIAKELLTK 695 (778)
T ss_dssp CHHHHHHHTTC
T ss_pred ChHHHHHHHHc
Confidence 34444555544
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=167.61 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=166.1
Q ss_pred cCHHHHHhhhcCCCh--HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCch
Q 014864 73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
..++.+++.|.++++ ++|..|+..+.++.... +++...+++.|++|.|+++|++++ +++|..|+|+|.|++.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 478999999999988 89999999999987654 567778999999999999999988 99999999999999998899
Q ss_pred hHHHHHhCCChhHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc---------------CCC
Q 014864 151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP 214 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---------------~~~ 214 (417)
++..+.+.|+||.|+++|. +++.+++++++.+|+||+.... .+..+.+. ++++|+.++. ...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999998 5799999999999999997655 66676664 6999988662 113
Q ss_pred chhHHHHHHHHHhhhhcCCCCCCh-hh-hhchHHHHHHhhcC------CChHHHHHHHHHHHHhccC
Q 014864 215 KLSMLRNATWTLSNFCRGKPQPPF-DQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~~~~~-~~-~~~~l~~L~~ll~~------~~~~v~~~a~~~l~~l~~~ 273 (417)
++.++++++++|.||+...+.... .. ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 679999999999999986532222 22 25678999999864 2667899999999999864
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.79 E-value=1.2e-16 Score=150.73 Aligned_cols=323 Identities=16% Similarity=0.147 Sum_probs=254.2
Q ss_pred cCHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhCCCch
Q 014864 73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~~l~~~~~~ 150 (417)
+.++.|.+.+.+ .-.+.+..|+..|+.+... .. ..+..++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~----y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK----YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT----TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH----hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 578999998886 5588999999999998532 22 234456699999999875 3478888999999988775432
Q ss_pred -----------------hHHHH-HhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-HHHHHHhc-CCHHHHHHHh
Q 014864 151 -----------------HTKVV-IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQ-GGLVPLLAQL 210 (417)
Q Consensus 151 -----------------~~~~i-~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~ll 210 (417)
..+.+ .+.+.++.|+.+|++.+..++..++.+|..|+...+. .++.+... ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 22233 3457899999999999999999999999999988776 78888854 8999999999
Q ss_pred cCCCchhHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014864 211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (417)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (417)
++..+.++..++..|.+|+.+++..+.... +++++.|+.++..+. ..+..+++.++.+|...+..+...+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 777889999999999999999866555444 699999999997654 47889999999999999988888999999
Q ss_pred ChHHHHhhcCCCCh------hhHHH---HHHHHHHhhcCCh------HHHHHHHHcCChHHHHHhhcCCC-chhHHHHHH
Q 014864 286 VFPRLAEFLMHPSP------SVLIP---ALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC 349 (417)
Q Consensus 286 ~~~~L~~~l~~~~~------~v~~~---a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~ 349 (417)
+++.|.+++..++. ....+ ++.++.-++.... .....+.+.|+++.++.++.+.. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999975432 12233 6666777766532 34456788999999999987652 568999999
Q ss_pred HHHHHHhcCCHHHHHHHHHCC---------CHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCC
Q 014864 350 WTVSNITAGNREQIQAVIEAN---------IIGPLVALLEN-AEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 350 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~ 401 (417)
.+++.+..+++.....+.... ++..|+.++.+ ..+++|..|+.++..+....
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 999999999998877776533 33334444544 46899999999999999874
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=3.2e-19 Score=182.76 Aligned_cols=317 Identities=15% Similarity=0.158 Sum_probs=229.0
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHH-H---HHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-V---IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~---~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 149 (417)
-++.+++.+.++++..+..|+.++..++... .+.... . .-..+++.|++++++++ +.+|..|+++|.++....+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 4678888888889999999999999887543 121110 0 01335888888888887 9999999999998887644
Q ss_pred hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
......+. +.++.++.++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus 207 ~~~~~~~~-~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHID-SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSHH-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 32221121 56788889999999999999999999999766543222222 3567777777 678899999999999999
Q ss_pred hcCCCCCC--hhhhhchHHHHHHhh-----------cC-----------CChHHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014864 230 CRGKPQPP--FDQVSPALPALAHLI-----------HS-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285 (417)
Q Consensus 230 ~~~~~~~~--~~~~~~~l~~L~~ll-----------~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 285 (417)
+....... .......+|.++..+ .+ .+..++..++.++..++...++ .++. .
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-H 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-H
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-H
Confidence 97631110 112346677777776 22 1224677888888888754321 1222 3
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (417)
+++.+...+.++++.+|..|++++|+++.+....... .-.++++.++..++++ ++.||..|+|++++++...+.....
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence 6788888889999999999999999999988764442 2346789999999998 9999999999999998632221101
Q ss_pred HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
..-.++++.|+..+.+.++.++..|+++|.+++...
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 111257888999998889999999999999998654
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=2.9e-16 Score=139.17 Aligned_cols=255 Identities=15% Similarity=0.105 Sum_probs=201.1
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
..++.+++.|.++++.++..|+..|.++.. .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 468999999999999999999999998741 235889999999988 8999999999999875322 11
Q ss_pred HHHHhCCChhHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 153 ~~i~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
. ..++.|. .++.++++.++..++++|+++....+.... ..++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 1334444 245778999999999999999754332222 2477888888 78899999999999998764
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHH
Q 014864 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311 (417)
Q Consensus 232 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~ 311 (417)
. ..+|.|..++.++++.++..++++|+.+....+. +++.|+.++.++++.++..|+++|+.
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 4789999999999999999999999998543332 46788999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHH
Q 014864 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEA 390 (417)
Q Consensus 312 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a 390 (417)
+. ....++.|...+.++ .++..|+++|+.+.. + .++|.|..++.+ .++++...+
T Consensus 219 ~~-----------~~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RK-----------DKRVLSVLCDELKKN---TVYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TT-----------CGGGHHHHHHHHTSS---SCCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred hC-----------CHhhHHHHHHHhcCc---cHHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence 86 234688899999865 389999999999853 1 578899999864 577888888
Q ss_pred HHHHHH
Q 014864 391 AWAISN 396 (417)
Q Consensus 391 ~~~L~n 396 (417)
..+|.+
T Consensus 274 ~~~l~~ 279 (280)
T 1oyz_A 274 IDKLKR 279 (280)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 877743
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.75 E-value=2.8e-17 Score=168.42 Aligned_cols=310 Identities=14% Similarity=0.151 Sum_probs=230.7
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
-+.+++.|.++++.++..++.++..++..+....+ .++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence 35667778888899999999999999876423333 345999999999988 899999999999998754333211
Q ss_pred HH----hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 155 i~----~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
-. -..+++.|+.++.++++.++..|+++|+++....+....... .+.++.++..+ .++++.++..++++|..++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 00 114577788888889999999999999998865442111101 13567777777 7788999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhc-----------CC
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----------MH 296 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l-----------~~ 296 (417)
...+.........+++.+..++.+.++.++..+++.+..++...... ..+.. .+++.++..+ .+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~--~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK--DVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH--HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 87543322344678888888899889999999999999998654221 11211 3456666666 33
Q ss_pred -----------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 014864 297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (417)
Q Consensus 297 -----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (417)
.++.++..|..+|+.++...+.. ++ ..+++.+...+.++ ++.+|..|++++++++.+.++....
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34567889999999988644322 11 24678888888888 9999999999999999987765544
Q ss_pred HHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 366 l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
.. .++++.++..+.++++.||..|+|++++++..
T Consensus 397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33 36899999999999999999999999998864
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=4.1e-16 Score=138.21 Aligned_cols=242 Identities=13% Similarity=0.100 Sum_probs=190.0
Q ss_pred HHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 014864 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191 (417)
Q Consensus 112 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 191 (417)
....+.++.|+..|.+++ +.++..|+++|+++.. + ++++.|+.++.++++.++..++++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345667999999999988 9999999999999863 1 468889999999999999999999999875433
Q ss_pred hHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271 (417)
Q Consensus 192 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~ 271 (417)
.... .++.|...+..++++.++..++++|..+....+ ......++.|..++.++++.++..++++|+++.
T Consensus 87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 2111 233344333377899999999999999985432 123467899999999999999999999999875
Q ss_pred cCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (417)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 351 (417)
. .+.++.|+.++.++++.++..|+++|+.+....+ ..++.|..++.++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2478999999999999999999999999864433 2467889999988 99999999999
Q ss_pred HHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 014864 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYE 409 (417)
Q Consensus 352 L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l 409 (417)
|+++.. ...++.|+..+.+++ ++..|+++|+.+......+.+..+
T Consensus 216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~~~~~~L~~~ 260 (280)
T 1oyz_A 216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDKTLLPVLDTM 260 (280)
T ss_dssp HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCGGGHHHHHHH
T ss_pred HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCchhhhHHHHHH
Confidence 999862 357888999998754 899999999998654333333333
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=4.5e-15 Score=140.19 Aligned_cols=327 Identities=13% Similarity=0.169 Sum_probs=247.5
Q ss_pred cCHHHHHhhhcC--CChHHHHHHHHHHHHhhhCCCCC----------------cHHHH-HHhCCHHHHHHhhcCCCCHHH
Q 014864 73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEV-IRSGVVPRFVEFLLREDYPQL 133 (417)
Q Consensus 73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~-~~~g~i~~Lv~lL~~~~~~~~ 133 (417)
.+++.++..|+. +|.+....++..|.++++....+ ..+.+ -+.+.++.|+.+|++.+ -.+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999986 57888888999998887754221 12233 25577999999999988 899
Q ss_pred HHHHHHHHHHHhCCCch-hHHHHHhC-CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhc
Q 014864 134 QFEAAWALTNIASGTSE-HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211 (417)
Q Consensus 134 ~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 211 (417)
+..++.+|..++...++ ..+.+... ++++.|+.+|+++.+.+|..++..|.+|+.++++.++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999998777 56666644 99999999999999999999999999999999999999999999999999995
Q ss_pred CCC---chhHHHHHHHHHhhhhcCCC-CCChhhhhchHHHHHHhhcCCCh------HHHHH---HHHHHHHhccCC----
Q 014864 212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDD------EVLTD---ACWALSYLSDGT---- 274 (417)
Q Consensus 212 ~~~---~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~------~v~~~---a~~~l~~l~~~~---- 274 (417)
... ...+...++.++.||.+.++ +.......+++|.|..++..+++ ....+ ++.++.-++...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 433 24678999999999999874 33444457889999999875432 12333 455555555442
Q ss_pred --hHHHHHHHHcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcC---------ChHHHHHhhcCCCc
Q 014864 275 --NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK 341 (417)
Q Consensus 275 --~~~~~~~~~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~~ 341 (417)
..+...+.+.|+++.|+.++... ...++..|+.+++.+.++++.....+.+.. ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23456788899999999998876 568999999999999999987777665432 33334555666546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHC----------CCH---HHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 342 KSIKKEACWTVSNITAGNREQIQAVIEA----------NII---GPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
..+|.+|+.++..+..++++....++.. +.+ ..|...+-+.|+----.|+.+|.++...
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~ 450 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE 450 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC
Confidence 8999999999999999888655555532 111 1344555556665555688888888775
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.67 E-value=1.3e-15 Score=149.44 Aligned_cols=309 Identities=12% Similarity=0.117 Sum_probs=224.8
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchh-HH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-TK 153 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~-~~ 153 (417)
++.+.+.+.++++.++..|+..+..+....+. ......+++.++.++++++ +.++..|+++|..++...... ..
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP----EITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH----HHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc----ccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhh
Confidence 44555556666777777777777776542111 1234567899999999887 899999999999998753322 11
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
...-..++|.+..++.++++.++..++++|+.++..-.. .. .....++.+..++ .+.++.++..++.++..++...
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhc
Confidence 112236788999999999999999999999999743211 11 1223678888888 6778999999999999888653
Q ss_pred CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~ 313 (417)
+. ......++|.+..++.+.+..++..++.++..++..-... .....+++.+..++.++++.++..|+.+++.++
T Consensus 395 ~~--~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 395 GI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp CH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 21 1233568899999998889999999999999886421110 111235788888999999999999999999998
Q ss_pred cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHH
Q 014864 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA 393 (417)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~ 393 (417)
...... .....++|.+..++.++ +..+|..++++++.++...+.. .+...++|.|+..+.++++++|..++++
T Consensus 470 ~~~~~~---~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 542 (588)
T 1b3u_A 470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKS 542 (588)
T ss_dssp HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHhCch---hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence 643322 12346788888888877 8999999999999998632221 1234689999999999999999999999
Q ss_pred HHHhhCCCCHH
Q 014864 394 ISNATSGGTHE 404 (417)
Q Consensus 394 L~nl~~~~~~~ 404 (417)
|+.+....+.+
T Consensus 543 l~~l~~~~~~~ 553 (588)
T 1b3u_A 543 LQKIGPILDNS 553 (588)
T ss_dssp HHHHGGGSCHH
T ss_pred HHHHHHHhchh
Confidence 99998764443
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.67 E-value=3e-15 Score=146.90 Aligned_cols=304 Identities=12% Similarity=0.087 Sum_probs=229.8
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.++.+++.++++++.++..|+..+..++...............++|.+..++++.+ +.++..++++|+.++..-.. .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence 36777888888999999999999999876542322222334567899999999888 89999999999998753111 1
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
. ....++|.+..+++++++.++..++.+++.++...... . .....++.+..++ .+.+..++..++.++..++..-
T Consensus 359 ~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 359 N-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp H-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence 1 12247889999999999999999999999887533211 1 1233577788877 7788999999999999988642
Q ss_pred CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~ 313 (417)
+.. .....++|.+..++.+++..++..++.+++.++...... .....+++.+..++.++++.+|..++.+++.++
T Consensus 434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 211 122457899999999999999999999999987543221 122348899999888889999999999999998
Q ss_pred cCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHH
Q 014864 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAW 392 (417)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 392 (417)
...... .....++|.+...+.++ ++.+|..++++++.++.. .++. ....++|.|..++.+.+.++|..|+.
T Consensus 509 ~~~~~~---~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~~a~~ 580 (588)
T 1b3u_A 509 EVCGQD---ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQE 580 (588)
T ss_dssp HHHHHH---HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhcCHH---HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 543221 23446899999999988 999999999999999863 2322 22356788888888899999999999
Q ss_pred HHHHhh
Q 014864 393 AISNAT 398 (417)
Q Consensus 393 ~L~nl~ 398 (417)
++..+.
T Consensus 581 al~~l~ 586 (588)
T 1b3u_A 581 ALTVLS 586 (588)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 998774
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=3.7e-15 Score=145.89 Aligned_cols=294 Identities=16% Similarity=0.146 Sum_probs=188.5
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.++.+.+.|.++++.++..|+..+.++.. .+.... +++.+..++.+++ +.+|..|++++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~~-----l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITEY-----LCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHHH-----HHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHHH-----HHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 44555666677777777777777766531 222222 3677999999888 99999999999999987665432
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
+.+.++.|..+|.++++.++..|+++|+.++.+.+.........+.+..|+..+ .+.++..+..++.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987653210001112356677777 4567778888888887776432
Q ss_pred CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~ 310 (417)
......+++.+..++++.++.|+..+++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888999999999999999999999998742 223333333 235677776654 78899999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHH
Q 014864 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a 390 (417)
.++...+..... .+..+. .+.+. +..+|..|++++.+++... ++. .+++.|..++.+.+.+++..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence 988644322110 011110 11122 3455555555555554321 111 133444455555555555555
Q ss_pred HHHHHHhhCC
Q 014864 391 AWAISNATSG 400 (417)
Q Consensus 391 ~~~L~nl~~~ 400 (417)
++++++++..
T Consensus 374 v~aI~~la~~ 383 (591)
T 2vgl_B 374 VRAIGRCAIK 383 (591)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 48
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.63 E-value=3e-15 Score=142.39 Aligned_cols=310 Identities=13% Similarity=0.078 Sum_probs=217.5
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCC-CcHHHHHHhCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhCCC-chh
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT-SEH 151 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~~~-~~~ 151 (417)
..+++.|.++++.+ ..++.++..++....+ ..+ .+++|.|++.+.++ + +.++..++.+|+.++... ++.
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~ 165 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQ 165 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchh
Confidence 45677777777777 7777778777654211 122 35699999999988 6 899999999999998742 222
Q ss_pred HHHHHhCCChhHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchHHH-HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 152 TKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
...... .+++.+..++.++ ++.++..++++++++...-..... .....-+++.+...+ .+.++.++..+++++..
T Consensus 166 ~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 166 LQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVK 243 (462)
T ss_dssp TGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred hHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Confidence 111121 4678888899887 799999999999997643221100 000111244555555 67789999999999999
Q ss_pred hhcCCCCCChhhhh-chHHHHHHhhcCCChHHHHHHHHHHHHhccCChH---------------------HHHHHHHcCC
Q 014864 229 FCRGKPQPPFDQVS-PALPALAHLIHSNDDEVLTDACWALSYLSDGTND---------------------KIQAVIEAGV 286 (417)
Q Consensus 229 l~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~ 286 (417)
++...+..-..... .+++.+...+.+.++.++..+++.+..++..... ...... ..+
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 322 (462)
T 1ibr_B 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYL 322 (462)
T ss_dssp HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhc
Confidence 99865432223345 7888888888888999999999988888743210 011111 235
Q ss_pred hHHHHhhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864 287 FPRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (417)
Q Consensus 287 ~~~L~~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 359 (417)
++.++..+.. +++.++..|+.+|+.++...... ++ ..+++.+...+.+. ++.+|..|+++++.++.+.
T Consensus 323 ~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSS
T ss_pred cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCC
Confidence 6667777753 24678999999999998655421 22 24678888888888 9999999999999999864
Q ss_pred H-HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 360 R-EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 360 ~-~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
. +.....+ ..++|.++..+.++++.+|..|+|+|++++...
T Consensus 398 ~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 398 EPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp CTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3 2221112 468999999999999999999999999998753
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=2.9e-14 Score=139.49 Aligned_cols=296 Identities=19% Similarity=0.160 Sum_probs=214.0
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.+..+.+.|.+++...+..++..+..+.... .+. ..+.+.+++++++++ ..++..+...+.+++...++..
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G-~d~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~~ 84 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVG-KDV------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDMA 84 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTT-CCC------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCh------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchHH
Confidence 45788899999999888888877666554432 221 224677888998888 8999999888888877444432
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
. -+++.+.+-|.++++.++..|+.+|+++. .++.... .++.+.+++ .++++.+++.|++++..++..
T Consensus 85 ---~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 85 ---I--MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp ---H--TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS
T ss_pred ---H--HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHhh
Confidence 1 35678888899999999999999999986 3332222 356788888 788999999999999999986
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.|. .....+.++.+..+|.++|+.|+..|+++|..++...++........+.+..|+..+.+.++..+...+++++.+
T Consensus 152 ~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 152 NAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp SCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred Chh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 543 222246889999999999999999999999999876542100001112356677777777888888999999988
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHhccCCHHHHHH
Q 014864 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIKKE 389 (417)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 389 (417)
+..++.... .+++.+..++++. ++.|+.+|++++..+... +++..+.+.. .+.+.|+.++. +++++|..
T Consensus 230 ~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~ 301 (591)
T 2vgl_B 230 NPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYV 301 (591)
T ss_dssp CCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHH
T ss_pred CCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHH
Confidence 865554332 4577888889988 999999999999998742 3333333222 35566665543 56677777
Q ss_pred HHHHHHHhhC
Q 014864 390 AAWAISNATS 399 (417)
Q Consensus 390 a~~~L~nl~~ 399 (417)
|+.+|..++.
T Consensus 302 aL~~l~~i~~ 311 (591)
T 2vgl_B 302 ALRNINLIVQ 311 (591)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 50
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.60 E-value=2.3e-14 Score=147.31 Aligned_cols=317 Identities=17% Similarity=0.203 Sum_probs=221.9
Q ss_pred CHHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCch
Q 014864 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~ 150 (417)
.++.+++.+.++ ++..+..++.++..++..- .+..-.-.-..+++.+...+.+++ +..++..|+++|..++..-..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888 8999999999999887542 111101112345777888888762 389999999999998863222
Q ss_pred hHH-HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 151 ~~~-~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
... ......+++.+...+.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 110 011113577778888888999999999999999865543322333335677777777 677889999999999888
Q ss_pred hcCC----------------C---CCCh--hhhhchHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChHHHHHH
Q 014864 230 CRGK----------------P---QPPF--DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV 281 (417)
Q Consensus 230 ~~~~----------------~---~~~~--~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (417)
+... | .... .....++|.++..+.. ++..++..+..++..++....+ .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GG
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hh
Confidence 7641 1 1111 1225667777777742 3467888899999888754321 12
Q ss_pred HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 014864 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (417)
Q Consensus 282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (417)
+. .+++.+...+.++++.+|..|+++++.++.+.. ...... -..+++.++..+.++ ++.+|..|+|++++++...+
T Consensus 364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence 22 366777788888999999999999999998765 333322 245889999999988 99999999999999987433
Q ss_pred HHH--HHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 361 EQI--QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 361 ~~~--~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
... ...+ ..+++.|+..+.+. +.++..|+++|.+++..
T Consensus 441 ~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 441 EAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 211 0111 24677888888774 89999999999998853
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.59 E-value=9.1e-14 Score=117.53 Aligned_cols=188 Identities=22% Similarity=0.212 Sum_probs=158.5
Q ss_pred CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCC
Q 014864 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237 (417)
Q Consensus 158 ~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~ 237 (417)
.+.++.|+.+|.++++.++..++++|+.+.. .+.++.|+.++ .++++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 3678999999999999999999999998743 23688899999 67899999999999998863
Q ss_pred hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 238 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
...++.|..++.++++.++..++++|+.+.. .+.++.|+.++.++++.++..|+.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3678999999999999999999999998853 2367889999999999999999999999852
Q ss_pred HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 318 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
...++.|..++.++ ++.+|..|+++|+.+.. + ..++.|..++.++++.+|..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 24578899999888 99999999999999943 2 3577888899999999999999999999
Q ss_pred hCCC
Q 014864 398 TSGG 401 (417)
Q Consensus 398 ~~~~ 401 (417)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7764
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.59 E-value=2.2e-13 Score=114.17 Aligned_cols=185 Identities=23% Similarity=0.226 Sum_probs=158.3
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCCh
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 238 (417)
+..+.++.+|.++++.++..|+++|+.+.. .+.++.|+..+ .++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 567889999999999999999999998753 13678899999 78899999999999998853
Q ss_pred hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChH
Q 014864 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318 (417)
Q Consensus 239 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 318 (417)
...++.|..++.++++.++..++++|+.+.. ...++.|+.++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2578999999999999999999999998753 2367889999999999999999999999853
Q ss_pred HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 319 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
...++.|..++.++ ++.+|..|+++|+++. .+ ..++.|..++.++++.+|..|.++|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999993 23 25778888899999999999999999875
Q ss_pred C
Q 014864 399 S 399 (417)
Q Consensus 399 ~ 399 (417)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.58 E-value=1.4e-13 Score=116.40 Aligned_cols=188 Identities=22% Similarity=0.186 Sum_probs=158.3
Q ss_pred hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (417)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (417)
.+.++.|+..|.+++ +.++..|+++|+.+.. ..+++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456999999999888 9999999999998764 2678999999999999999999999999852
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 274 (417)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888988 78899999999999998864 3578999999999999999999999999842
Q ss_pred hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (417)
Q Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (417)
...++.|..++.++++.++..|+.+|+.+.. ...++.|..+++++ ++.+|..|..+|++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2367889999999999999999999999852 13467788899888 99999999999999
Q ss_pred HhcCC
Q 014864 355 ITAGN 359 (417)
Q Consensus 355 l~~~~ 359 (417)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 97643
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.56 E-value=1.8e-13 Score=114.76 Aligned_cols=184 Identities=22% Similarity=0.204 Sum_probs=158.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+...
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH------
Confidence 45889999999999 9999999999998764 25789999999999999999999999998421
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
..++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 3678888988 77899999999999999854 2578899999999999999999999999853
Q ss_pred HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl 355 (417)
...++.|..++.++++.++..|+.+|+.+. .+ ..++.|..++.++ ++.+|..|..+|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 246788999999999999999999999984 22 2467788889888 999999999999987
Q ss_pred h
Q 014864 356 T 356 (417)
Q Consensus 356 ~ 356 (417)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.55 E-value=1.9e-13 Score=140.49 Aligned_cols=313 Identities=17% Similarity=0.162 Sum_probs=203.2
Q ss_pred HHHHHhhhc-------CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q 014864 75 LPVMVAGVW-------SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147 (417)
Q Consensus 75 l~~l~~~l~-------s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~ 147 (417)
++.+++.+. ++++..+..|+..+..++....... + ..+++.+...+.+++ ..+|..|+++|+.++.+
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~----~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG----H-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh----H-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcC
Confidence 455666664 2356788888888888765421111 1 235777788888877 89999999999999987
Q ss_pred Cc-hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH--HHHHhcCCHHHHHHHhcCCCchhHHHHHHH
Q 014864 148 TS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224 (417)
Q Consensus 148 ~~-~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~ 224 (417)
.. +....... .+++.++..+.++++.++..|+|+|++++...+... ... -..+++.++..+ .+. +.++..++|
T Consensus 397 ~~~~~~~~~~~-~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l-~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 397 PEPSQLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGL-SAE-PRVASNVCW 472 (876)
T ss_dssp SCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHT-TSC-HHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHH-cCC-HHHHHHHHH
Confidence 54 33333332 578999999999999999999999999986533210 000 112567778887 443 888999999
Q ss_pred HHhhhhcCCC--------------CCChhhhhchHHHHHHhhcCC---ChHHHHHHHHHH--------------------
Q 014864 225 TLSNFCRGKP--------------QPPFDQVSPALPALAHLIHSN---DDEVLTDACWAL-------------------- 267 (417)
Q Consensus 225 ~l~~l~~~~~--------------~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~l-------------------- 267 (417)
++.+++.... .........++|.|..++... +..++..++.++
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~ 552 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL 552 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHH
Confidence 9999986421 111223456777777776543 223444444443
Q ss_pred ------------------------------------HHhccCCh-HHHHHHHHcCChHHHHhhcCCCC--hhhHHHHHHH
Q 014864 268 ------------------------------------SYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRT 308 (417)
Q Consensus 268 ------------------------------------~~l~~~~~-~~~~~~~~~~~~~~L~~~l~~~~--~~v~~~a~~~ 308 (417)
..++.... ....... ..+++.++..+.+.+ +.++..++.+
T Consensus 553 ~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~ 631 (876)
T 1qgr_A 553 VIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMA 631 (876)
T ss_dssp HHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHHHH
Confidence 33333222 1111111 125667777787664 4788999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc--CCHHH
Q 014864 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDI 386 (417)
Q Consensus 309 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v 386 (417)
++.++..........+. .+++.+...+.+..++.+|..|+++++.++......+...+. .+++.|+..+.+ .+.++
T Consensus 632 l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 632 VSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp HHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGG
T ss_pred HHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHh
Confidence 99998643322221222 367888888876536889999999999998632223333332 578888888886 46789
Q ss_pred HHHHHHHHHHhhCC
Q 014864 387 KKEAAWAISNATSG 400 (417)
Q Consensus 387 ~~~a~~~L~nl~~~ 400 (417)
+..+++++++++..
T Consensus 710 ~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 710 KPQILSVFGDIALA 723 (876)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999763
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.55 E-value=6.7e-14 Score=143.63 Aligned_cols=315 Identities=14% Similarity=0.176 Sum_probs=216.0
Q ss_pred CHHHHHhhhcC-------CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864 74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 74 ~l~~l~~~l~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 146 (417)
.++.++..+.. +++..+..|...+..++........ ..+++.+.+.+.+.+ ...+..|+++|+.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 35666666653 2357888888888887653211212 234777778888877 7999999999999998
Q ss_pred CCc-hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH--HHHHHhcCCHHHHHHHhcCCCchhHHHHHH
Q 014864 147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (417)
Q Consensus 147 ~~~-~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~ 223 (417)
+.. +.....+. .+++.++..+.++++.++..++|+++.++...... .... -..+++.++..+ .+. +.++..++
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l-~~~-~~v~~~a~ 474 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGL-QDH-PKVATNCS 474 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHH-TSC-HHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHh-ccC-hHHHHHHH
Confidence 743 43333443 57899999999999999999999999998432110 0000 112467788888 444 88999999
Q ss_pred HHHhhhhcCCC----CCChhhhhchHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC-
Q 014864 224 WTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH- 296 (417)
Q Consensus 224 ~~l~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~- 296 (417)
|++.+++.... .........+++.|...+.+.+ +.++..++.+++.++..........+. .+++.++..+..
T Consensus 475 ~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~ 553 (861)
T 2bpt_A 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQT 553 (861)
T ss_dssp HHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHH
Confidence 99999987532 1122344677888888887543 789999999999987654432222222 245555555542
Q ss_pred --------------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCHH
Q 014864 297 --------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNRE 361 (417)
Q Consensus 297 --------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~v~~~a~~~L~nl~~~~~~ 361 (417)
....++..++.+|++++.......... -..+++.+...+++. +. .++..++++++.++.....
T Consensus 554 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~ 631 (861)
T 2bpt_A 554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGK 631 (861)
T ss_dssp TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGG
T ss_pred HhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhh
Confidence 134577889999999987655422211 125677888888887 66 8999999999999863222
Q ss_pred HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 362 ~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.....+. .++|.|+..+.+++++++..|+.+++.++....
T Consensus 632 ~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 632 GFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp GGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred hHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 2222222 488899999988889999999999998876543
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.55 E-value=2.5e-14 Score=146.81 Aligned_cols=316 Identities=10% Similarity=0.126 Sum_probs=217.3
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH--H
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--K 153 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~--~ 153 (417)
+.+.+.+.+.++..+..|+.++..++...........+ ..+++.++..+.+++ +.++..++|+++.++..-.... .
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 34445566888999999999999987543112222222 247899999999887 9999999999999986321100 0
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chHHHHHHhcCCHHHHHHHhcC-CCchhHHHHHHHHHh
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-----PRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLS 227 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~a~~~l~ 227 (417)
... ..+++.++..+.++ +.++..++++|.+++... ......+ ..+++.|+..+.. +.++.++..+++++.
T Consensus 450 ~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 450 QHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 011 14577888888765 899999999999997431 1121111 1246777888843 334789999999999
Q ss_pred hhhcCCCCCChhhhhchHHHHHHhhcCC---------------ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh
Q 014864 228 NFCRGKPQPPFDQVSPALPALAHLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292 (417)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~---------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 292 (417)
.++...+..........+|.++..+... ...++..++.++..++............ .+++.++.
T Consensus 526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~ 604 (861)
T 2bpt_A 526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR 604 (861)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence 9998765433344456677777666421 3457788899998887654332211222 36777888
Q ss_pred hcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 014864 293 FLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371 (417)
Q Consensus 293 ~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 371 (417)
.+.+.+. .++..++.+++.++..........+ ..++|.+...+.+. ++.++..++++++.++....+...... ..+
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l 681 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM 681 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence 8887776 8999999999999865443322222 24788899999877 888999999999999864333333333 257
Q ss_pred HHHHHHHhccCC--HHHHHHHHHHHHHhhCCC
Q 014864 372 IGPLVALLENAE--FDIKKEAAWAISNATSGG 401 (417)
Q Consensus 372 i~~L~~~l~~~~--~~v~~~a~~~L~nl~~~~ 401 (417)
++.++..+.+.+ +++|..++.+++.++...
T Consensus 682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 682 MNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 888888888764 889999999999988754
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.55 E-value=4.8e-13 Score=131.41 Aligned_cols=288 Identities=16% Similarity=0.128 Sum_probs=217.1
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.++.+.+.|.++++.++..|++++.++.. + .+. ..+++.+..+|.+.+ +.+|..|+.++.++....++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 45677777788888888888888888742 1 122 345888999999988 99999999999999987665432
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC--------------CCchhHH
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML 219 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--------------~~~~~~~ 219 (417)
+.++.+..++.+.++.++..|+++|+.++..++.....+ ...++.++.+|.+ ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 678888899999999999999999999998766432222 2467888877742 3478888
Q ss_pred HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc------CCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhh
Q 014864 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293 (417)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~ 293 (417)
..++.++..++..+|. .....++.|..++. +.+..+...+++++..+... +.. .. .+++.|..+
T Consensus 252 ~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~~-~a~~~L~~~ 321 (618)
T 1w63_A 252 VRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGL----RV-LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHH----HH-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHH----HH-HHHHHHHHH
Confidence 8999999999876431 22334455555542 23567889999999988542 221 11 256788888
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Q 014864 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373 (417)
Q Consensus 294 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 373 (417)
+.++++.++..|+.+|+.++...+... ....+.++..+.++ +..+|..|..+|..++.... +. .+++
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~-----~iv~ 388 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IR-----GMMK 388 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--TH-----HHHH
T ss_pred HhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HH-----HHHH
Confidence 999999999999999999997544322 23567888999988 99999999999999987421 12 2457
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 374 PLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 374 ~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
.|...+.+.+.+++..++.+|+.++..
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 788888889999999999999999985
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.54 E-value=9.8e-14 Score=131.92 Aligned_cols=277 Identities=17% Similarity=0.192 Sum_probs=194.1
Q ss_pred CHHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhCCCch
Q 014864 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE 150 (417)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~ 150 (417)
.++.+++.+.++ ++..+..|+..+..++........... -..+++.++..++++. ++.++..|+++++++...-..
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888 899999999999998764211111111 1236888999999872 389999999999997653221
Q ss_pred hHH-HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 151 ~~~-~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..+
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHH
Confidence 110 001112466777778889999999999999999865442111111114566667777 667889999999999998
Q ss_pred hcCC---------------C--CCChh----hhhchHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChHHHHHH
Q 014864 230 CRGK---------------P--QPPFD----QVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAV 281 (417)
Q Consensus 230 ~~~~---------------~--~~~~~----~~~~~l~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~~~~~~~~~ 281 (417)
+... + ..... ....++|.++..+... +..++..++.+|..++....+ .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~ 363 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI 363 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---TH
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HH
Confidence 8642 0 01111 1255677777777432 357889999999998764432 12
Q ss_pred HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 282 ~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
+ ..+++.+...+.++++.++..|+.++|.++.+.. ..... .-..++|.++..+.++ ++.||..|+|+|++++..
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 2 2367888888999999999999999999998765 21111 1247899999999998 999999999999999863
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.52 E-value=1.3e-12 Score=128.26 Aligned_cols=292 Identities=16% Similarity=0.116 Sum_probs=219.4
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
.....+++.+.+++...+..+.-.+..++.. ++..-.+ +++.|.+-|++++ +.++..|+++|+++.. ++..
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~ 140 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC 140 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH
Confidence 4667888999999999998888888877643 2221112 3778888889888 8999999999999984 4322
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
+ ..++.+..++.++++.++..|+.+++++....|+.. .+.++.+..++ .+.++.++..|++++..++..
T Consensus 141 ----~-~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 141 ----R-DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp ----H-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred ----H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence 2 567888999999999999999999999997666432 24677777777 788999999999999999976
Q ss_pred CCCCChhhhhchHHHHHHhhcC---------------CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC--
Q 014864 233 KPQPPFDQVSPALPALAHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-- 295 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~---------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-- 295 (417)
.+.. .......+|.++.+|.. .++..+..++.+++.++..+++... .+.+.|..++.
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~ 283 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT 283 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence 4321 22345677777776642 4788889999999999877654322 34455555442
Q ss_pred ----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 014864 296 ----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371 (417)
Q Consensus 296 ----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 371 (417)
+.+..+...|++++..+... +... ..+++.|..++.++ ++.+|..|+.+|+.++...+.. +. ..
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~----~~-~~ 351 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNA----VQ-RH 351 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHH----HG-GG
T ss_pred ccccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHH----HH-HH
Confidence 23457888999999887542 2111 13567888889988 9999999999999998754542 22 35
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 372 IGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 372 i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.+.++.++.+++..+|..|+.+|..++...+
T Consensus 352 ~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 352 RSTIVDCLKDLDVSIKRRAMELSFALVNGNN 382 (618)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence 6788999999999999999999999988764
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.42 E-value=1.8e-12 Score=137.92 Aligned_cols=273 Identities=14% Similarity=0.121 Sum_probs=199.9
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
.++.+++.+.+.|++.+..|...|.+.+... ....+.-....+++.+++.|.+.+ +.+|..|+.+|+.++...++ .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence 4789999999999999999999998876542 111111112345888999998877 89999999999999986444 1
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchH------HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~------~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~ 227 (417)
.+ ..+++.|+..+.++++.++..++.+|+.++...... ... .....++.|+..+.++++..++..++.++.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 146788888888888899999999999998543321 111 122367888888844578899999999999
Q ss_pred hhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC-hhhHHHHH
Q 014864 228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPAL 306 (417)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~v~~~a~ 306 (417)
.++...+..........++.+...+.++++.++..++.+++.++....+. ++ ..+++.++..+.+.+ +.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99975433222345778889999999889999999999999998765432 12 235777777776543 56788899
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864 307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (417)
Q Consensus 307 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 359 (417)
.+++.++...+..... .-..+++.++..+.+. ++.+|..++++++.++...
T Consensus 236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC
Confidence 9999998654432111 1236889999999988 8999999999999998743
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.35 E-value=1.3e-11 Score=131.37 Aligned_cols=318 Identities=13% Similarity=0.147 Sum_probs=216.1
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc----HHHHHHhCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhCCC
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT 148 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~ 148 (417)
.++.++..+.++++.++..|+.++..++..-..+. ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 35677777788888889989999988876532220 0111223469999999984 65 899999999999998532
Q ss_pred chhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
+....... ...++.|+..+.++++.++..|+.+|+.++...+. .+ -...++.++..+....+...+..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 21111111 24567778888888999999999999999965442 11 223577888887554445677788888888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC------------
Q 014864 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------ 296 (417)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~------------ 296 (417)
++...+..-......++|.+...+.+++++++..+++++..++....+.....+. .+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccc
Confidence 8876443222345788999999999889999999999998887643322111121 244555444421
Q ss_pred -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864 297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (417)
Q Consensus 297 -------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 351 (417)
..+.+|..|+.+++.++...+.....+ -..++|.+...+.+. ++.+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 124678899999999987544333322 346788888888877 89999999998
Q ss_pred HHHHhc--CC-----------------HHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 352 VSNITA--GN-----------------REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 352 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
+..++. +. ......++ ..+++.+...+.+.++.+|..++.+|+.++...
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 888764 11 11122222 346777777799999999999999999987653
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.35 E-value=8.5e-10 Score=108.04 Aligned_cols=295 Identities=15% Similarity=0.164 Sum_probs=203.1
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
.....+++.+.+++...+..+.-.+..++... +..-.+ +++.+.+=|++++ +.++-.|+.+|+++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--SELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--HHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--cHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence 46789999999999999999988888876432 211112 2667777888888 9999999999999965 4433
Q ss_pred HHHHhCCChhHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 153 KVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
+ ..++.+.+++ .+.++.++..|+.++.++....|+. +...+.++.+..++ .+.++.++..|+.++..++
T Consensus 145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 2 5678889999 8899999999999999998766542 22246888999999 7889999999999999998
Q ss_pred cCCCCCChhhhhchHHHHH----HhhcCC-------------ChHHHHHHHHHHHHhccCC-hHHHHH-------HH---
Q 014864 231 RGKPQPPFDQVSPALPALA----HLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQA-------VI--- 282 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~----~ll~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~-------~~--- 282 (417)
...+. .....+|.++ +++... ++..+...+..+..++... ++.... ++
T Consensus 216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 76532 1122222222 222110 3445555555555544321 111110 00
Q ss_pred -----------------------------------HcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 014864 283 -----------------------------------EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327 (417)
Q Consensus 283 -----------------------------------~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 327 (417)
-..++..|..++.++++.++-.|+.+|..++...+. .. .+ ..
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~ 368 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KT 368 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HT
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HH
Confidence 002345666777777788888888888888766542 11 12 24
Q ss_pred ChHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 328 ALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 328 ~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
..+.++..+. ++ +..+|..++.+|..++. +.++.. ++..|...+...+.+++.+++.+++.++..
T Consensus 369 ~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 369 HIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp THHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 5677888888 77 88999999999999874 444443 455777888888899999999999988753
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.29 E-value=7e-10 Score=86.47 Aligned_cols=218 Identities=15% Similarity=0.161 Sum_probs=180.4
Q ss_pred hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCC
Q 014864 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236 (417)
Q Consensus 157 ~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~ 236 (417)
+..++..++.+|.++-..++.+|+..+.+++..-++..+. .+..|+.++..+...+....+..+++.++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3457888999999999999999999999999888876555 356788888788888898999999999998754
Q ss_pred ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC
Q 014864 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 237 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 316 (417)
..+.+.+|.+..-..-.|++++.+...+|..++..++.... +++.-+..++.+++..-+..|+..|+.+..+.
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 56688899999888888999999999999999988876544 35677899999999888888999998888776
Q ss_pred hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014864 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396 (417)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~n 396 (417)
..... -.+|.|+.+|.+. +.-||..|.-+|.+++..++..+.. +..-+.-+++....+++....+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 65443 5689999999999 9999999999999999988875443 2334556777788899999999988
Q ss_pred hhCC
Q 014864 397 ATSG 400 (417)
Q Consensus 397 l~~~ 400 (417)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8754
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.24 E-value=1.4e-10 Score=115.02 Aligned_cols=215 Identities=16% Similarity=0.115 Sum_probs=157.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHH-HHhhCCCCHHHHHHHHHHHHHhhCC-CchH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGD-SPRC 193 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~ 193 (417)
.++| +++.|++++ +..|..|+++|++++. ++..+..+...|++..+ ..+|.+++.+++..|+++|+||+.+ ++..
T Consensus 35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3444 567789988 8999999999999998 47888888888888765 4578889999999999999999954 5678
Q ss_pred HHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 194 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 273 (417)
...+...|++++|+.++. .....+..+........ ......+ .++...++.+|.+|+..
T Consensus 112 ~~~l~~~~il~~L~~~l~---------~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAK---------AVLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHHHTTHHHHHHHHHH---------HHHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH---------hhHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence 888999999999999982 22222222221110000 0001111 13445677788888888
Q ss_pred ChHHHHHHHHcCChHHHHhhcCCC---ChhhHHHHHHHHHHhhcCChHHHHHHHHcCChH---HHHHhhcCCCchhHHHH
Q 014864 274 TNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP---CLLNLLSGNYKKSIKKE 347 (417)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~v~~~ 347 (417)
+++....+...+.++.|+..|.+. ...++..|+.+|..++..++...+.+.+.+... .+..+.. . +...+..
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~l 248 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVM 248 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHH
Confidence 888777888888999999988543 357999999999999999999888888776543 3333333 3 4456788
Q ss_pred HHHHHHHHh
Q 014864 348 ACWTVSNIT 356 (417)
Q Consensus 348 a~~~L~nl~ 356 (417)
+|+.|.|+.
T Consensus 249 a~giL~Ni~ 257 (684)
T 4gmo_A 249 ACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 999999985
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.23 E-value=9.1e-10 Score=109.34 Aligned_cols=273 Identities=14% Similarity=0.135 Sum_probs=194.2
Q ss_pred CHHHHHhhhc---CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 014864 74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN 143 (417)
Q Consensus 74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~~ 143 (417)
++..+-+.|. ++++.++.-|+..+.-+-.+..+ .++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4556666666 56778888888888876554321 13667777776543 36788899999999
Q ss_pred HhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHH
Q 014864 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT 223 (417)
Q Consensus 144 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~ 223 (417)
+..|+... .+++.|..++.+++..+++.|+.+||.+..+.... + ++..|++.+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHH
Confidence 87764321 35677888888777778889999999885443311 1 3566777765667889999999
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHH--hccCChHHHHHHHHcCChHHHHhhc-CCCCh
Q 014864 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEFL-MHPSP 299 (417)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~ 299 (417)
.+|+.+..+.+ ..++.++..|. +.++.++..++.+++- ...++... ++.|+..+ .+.+.
T Consensus 530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 99998876643 34566666665 4578888887776653 33444433 34344443 45677
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh
Q 014864 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l 379 (417)
.+|..|+.+||.+..+.++ .++.++.+|.+..++.+|..|+++|+.++.+++.. .++..|..++
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 8999999999999888753 35566665554449999999999999999876531 2566777888
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCC
Q 014864 380 ENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 380 ~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
++.+..|+..|+.+|+.+..+.+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999987643
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.08 E-value=8.5e-09 Score=100.97 Aligned_cols=218 Identities=16% Similarity=0.150 Sum_probs=154.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHH----HhhCC-------------CCHHHHHH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV----KLLYS-------------PSDDVREQ 178 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~----~ll~~-------------~~~~i~~~ 178 (417)
++++.+.++|.+.+ +.++..|+.++..++..++.... ..+|.++ +++.. +++-.+..
T Consensus 187 ~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 187 DWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp SCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred hHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 78999999998877 99999999999999986554221 2344444 33321 16778888
Q ss_pred HHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCC--------c--hhHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 014864 179 AVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQP--------K--LSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247 (417)
Q Consensus 179 a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~--------~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 247 (417)
.+..|+.++.. ++..++.+.+ .+..++..+...+ + ..+...++.++..+.. .......++..
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~ 333 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQ 333 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHH
Confidence 99999998863 4444444333 3444444332211 2 3777888888888752 23445678888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864 248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (417)
Q Consensus 248 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 326 (417)
|..++.+++++++.-++.++..++...+.. . ++ ......++..+. +++..++..++.++..++. +.....
T Consensus 334 L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~---- 404 (621)
T 2vgl_A 334 LGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ---- 404 (621)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH----
Confidence 999999899999999999999998765321 1 22 236788888898 8899999999999999984 334443
Q ss_pred CChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 327 ~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
++..|...+.+. +..++..++..++.++.
T Consensus 405 -Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 405 -IVAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp -HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 355677777777 88888888888888874
No 68
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.08 E-value=4.9e-10 Score=111.13 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=150.8
Q ss_pred CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHH-HHHhhcCCChHHHHHHHHHHHHhccC-ChHHHH
Q 014864 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQ 279 (417)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~ 279 (417)
.+.++++.| +++++..+..|+++|++|+.+..........++++. +..+|.+++.+|+..++++|.||+.. ..+...
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 466788888 889999999999999999975433334444667665 56788888999999999999999865 356667
Q ss_pred HHHHcCChHHHHhhcCCCC---------------------hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC
Q 014864 280 AVIEAGVFPRLAEFLMHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 338 (417)
.++..|+++.|..++.... +.+...++.+|.+++.+++.....+...+.++.++..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 7899999999998875210 1244567889999999998888888888999999998854
Q ss_pred C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCH---HHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 339 N--YKKSIKKEACWTVSNITAGNREQIQAVIEANII---GPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 339 ~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i---~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
. ....++..|+.+|.+++..+++.++.+.+.+.. ..+..+ ...+...+..+++.|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 3 145799999999999999999999988876643 333333 3344456778899999974
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.06 E-value=1.4e-09 Score=93.68 Aligned_cols=191 Identities=14% Similarity=0.217 Sum_probs=146.1
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-CCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 014864 205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIE 283 (417)
Q Consensus 205 ~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 283 (417)
.+...+ .+.+...+..++..|..+....+.........+++.|...+. +.+..++..++.+++.++..-.........
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 466777 788999999999999999886332222234577888999995 889999999999999998543222222222
Q ss_pred cCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHH
Q 014864 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQ 362 (417)
Q Consensus 284 ~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~ 362 (417)
.+++.++..+.+++..++..|..+|..++..... . .+++.+...+++. ++.+|..++..|+.+... .++.
T Consensus 98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 3789999999999999999999999999875431 1 3578899999988 999999999999997653 2331
Q ss_pred -HHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHH
Q 014864 363 -IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406 (417)
Q Consensus 363 -~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 406 (417)
....+. .++|.|+.++.+.++++|..|..+++.++.....+.+
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 112222 5899999999999999999999999999876554433
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.06 E-value=1.3e-07 Score=73.94 Aligned_cols=215 Identities=17% Similarity=0.156 Sum_probs=168.3
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.+..++..|..+-+.+|..|+..+..+...- ++...-+ +..|+.+++.+.......+.+++++.++...|+..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 45788899998888999999999999886442 3333333 66777787766557888899999999998777655
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
. +.+|.+..-..-.+++++....++|..|+..+|..-.. ++..+..++ .++|..-+..++.++..+...
T Consensus 106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~sml-tskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSML-SSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHT-SCSSHHHHHHHHHHHHTCCTT
T ss_pred H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHh-cCCChHHHHHHHHHHHHHhcc
Confidence 4 56788888777789999999999999999888864333 566788888 677777777777777766654
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHh
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l 312 (417)
.+....+.+|.|..+|++.|.-|+..+..+|.+++..++.... ++...+.-+.+.+..+....-..|+.+
T Consensus 175 ----~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 175 ----SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp ----THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ----CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999999988876332 344456677888887887777777777
Q ss_pred hc
Q 014864 313 VT 314 (417)
Q Consensus 313 ~~ 314 (417)
+.
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.04 E-value=1.8e-08 Score=90.18 Aligned_cols=276 Identities=13% Similarity=0.076 Sum_probs=164.4
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHH
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK 153 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 153 (417)
....+++.+.++|...+...--.+..++... ++.+ + ++..|.+=+++++ +-++-.|+++|+++... +..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence 3567788999999999998888887775442 2322 2 4778888889988 99999999999999874 3332
Q ss_pred HHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC
Q 014864 154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 154 ~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+.+.+.+.+.+.++-|+..|+.+...+....|+.. .++++.+-.++ .+.++.++.+|+.++..++..+
T Consensus 139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 345667788899999999999999999998887632 36888888888 7788999999999999998753
Q ss_pred CCCChhhhhchHHHHHHhhcCC---ChHHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864 234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (417)
Q Consensus 234 ~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 309 (417)
...+..++..+... ++-.+...+..+..++..+ +. ....+++.+.++|++.++.|.-.|+++|
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 11333344444332 4555555666665555443 12 2235778899999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHH
Q 014864 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389 (417)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 389 (417)
..+...+.. .. ..++..+..++.++ ++.+|..|...|..++...|...+. .-..+.++++++|..+..-
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 887542221 11 24566777888888 9999999999999999877765432 3445677888888777666
Q ss_pred HHHHH
Q 014864 390 AAWAI 394 (417)
Q Consensus 390 a~~~L 394 (417)
|+.+|
T Consensus 344 Aittl 348 (355)
T 3tjz_B 344 AITTL 348 (355)
T ss_dssp -----
T ss_pred HHHHh
Confidence 65555
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.03 E-value=8.2e-08 Score=95.54 Aligned_cols=274 Identities=16% Similarity=0.134 Sum_probs=189.6
Q ss_pred HHHHHhhhcCCC--------hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864 75 LPVMVAGVWSND--------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 75 l~~l~~~l~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 146 (417)
+..|.+.|.+++ +.++..|+..|.....+..++ .+++.|...|.+++ ...+..|+.+|+.+-.
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 445555555443 556666666666554443222 23777888888777 6777789999998855
Q ss_pred CCchhHHHHHhCCChhHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHH
Q 014864 147 GTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (417)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~ll-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (417)
|+... .++..|+..+ ...+..++..++.+|+.+....++ .++.++..+..+.++.++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 53321 2344555544 356889999999999999877664 567788888677888888888888
Q ss_pred HhhhhcCCCCCChhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc-CCCChhhHH
Q 014864 226 LSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLI 303 (417)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~v~~ 303 (417)
++--+.+..+ ...++.|+..+ .+.+..++..|+.+|+.+..+.++ .++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 7755554322 23444444443 455788999999999988766542 456676654 567899999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHCCCHHHHHHHh
Q 014864 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQAVIEANIIGPLVALL 379 (417)
Q Consensus 304 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~~l 379 (417)
.|..+||.++.+++... +++.|..++.+. +..||..|+.+|+.+..++.+. +. ++...|....
T Consensus 631 gAalALGli~aGn~~~~-------aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva-----~~l~~L~~~~ 697 (963)
T 4ady_A 631 GTAFALGIACAGKGLQS-------AIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVA-----DINKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHTSSSCCHH-------HHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHH-----HHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHH-------HHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHH-----HHHHHHHHHH
Confidence 99999999998887422 356777888888 9999999999999999864432 22 2344556666
Q ss_pred cc--CCHHHHHHHHHHHHHhhCCC
Q 014864 380 EN--AEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 380 ~~--~~~~v~~~a~~~L~nl~~~~ 401 (417)
.+ .++..+..|..+.+-+-.++
T Consensus 698 ~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hcccccHHHHHHHHHHHHHHhcCC
Confidence 53 46788888888888775543
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.91 E-value=8.7e-08 Score=82.36 Aligned_cols=185 Identities=13% Similarity=0.084 Sum_probs=141.2
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
+.+.+.+.+.++..+..|+..|..++.+.+ ...... -..+++.|...+. +.+ ..++..|+.+++.++.+-......
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~-~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHP-KLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCS-SBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCC-CCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 357888899999999999999999987621 110000 1234788888885 777 899999999999999742222222
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCC-
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK- 233 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~- 233 (417)
.+. .++|.++..+.+++..+++.+..+|..++...+ .. ..++.+...+ ++.++.++..++..+..+....
T Consensus 95 ~~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YAS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESL-SNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence 222 478999999999999999999999999987544 21 1467788888 6778999999999999965543
Q ss_pred CC-CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 014864 234 PQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272 (417)
Q Consensus 234 ~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~ 272 (417)
+. ........++|.+..++.+.+++++..+..+++.++.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 32 2334557899999999999999999999999998863
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.89 E-value=2.8e-07 Score=75.27 Aligned_cols=187 Identities=14% Similarity=0.136 Sum_probs=150.3
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
+.+..+..+|+..|+.++..|+.++.++++.- +.......-..+++.++.++.+.+ ..+...|++||..+..+.|-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence 35688899999999999999999999999763 333444444556999999999988 8999999999999999876555
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
..+.. .+.+|..++.++++-++..++..++.+---.+ .+ +++..+..++ .+.|..++..++.++.+++..
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 55553 57788999999999999999999999942222 22 2467788888 999999999999999999986
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 233 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 273 (417)
.. +......++.-+-.+|.+.|+.++..|+.++-.+...
T Consensus 181 S~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 181 SA--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CS--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred cC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 42 2334456666677888999999999999999888754
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.3e-08 Score=87.61 Aligned_cols=193 Identities=11% Similarity=0.082 Sum_probs=141.0
Q ss_pred HHHHhcCCCchhHHHHHHHHHhh-hhcCCCCCC--hhhhhchHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh-HHHH-
Q 014864 206 LLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPP--FDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ- 279 (417)
Q Consensus 206 L~~ll~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~-~~~~- 279 (417)
+...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ .+.+..++..++.+++.++.+-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44555 78899999999999999 886543322 222356688888889 67899999999999999985322 1111
Q ss_pred HHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 014864 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 359 (417)
.... .+++.++..+.+..+.++..+..++-.++...+.......-..+++.|+..+++. ++.+|..++.+|+.++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 1222 2688999999999999999999998888864421100000012567888999998 9999999999999998633
Q ss_pred H---HHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 360 R---EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 360 ~---~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
+ ......+...++|.|..++.+.++.+|..|..+++.++...
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 2 44444443579999999999999999999999999987543
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.86 E-value=7.9e-08 Score=86.09 Aligned_cols=243 Identities=12% Similarity=0.078 Sum_probs=142.3
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhH
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT 152 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 152 (417)
-..+.+.+.++++++-++-.|++.+.++.. ++..+. +.+.+.+.|.+.+ +.++..|+.+...+....|+..
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD---STMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH
Confidence 467888999999999999999999999964 333433 3777888999998 9999999999999998777654
Q ss_pred HHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC--chhHHHHHHHHHhhhh
Q 014864 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFC 230 (417)
Q Consensus 153 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~~a~~~l~~l~ 230 (417)
+ +.++.+-.++.+.++-++.+|+.+|..+...+.. .+..++..+.... ++-.+...+..+..++
T Consensus 175 ~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~ 240 (355)
T 3tjz_B 175 K-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL 240 (355)
T ss_dssp H-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred H-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence 3 6889999999999999999999999999875532 3445565553422 4555555555555555
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~ 310 (417)
..+ ........++.+..+|++.++.|...++.++..+...+.. .. ..++..|..++.++++.++-.|++.|.
T Consensus 241 ~~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 241 EDE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred ccc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 443 1123356778888889999999999999999998653322 12 234566777888899999999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 311 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
.++...+...+ ..-.-+..++.++ +..+.-.|.-+|
T Consensus 313 ~l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl 348 (355)
T 3tjz_B 313 KVAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL 348 (355)
T ss_dssp ------------------------------------------
T ss_pred HHHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence 99987775543 2234467778877 777766665554
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.81 E-value=1.4e-07 Score=76.95 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=149.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHH
Q 014864 116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195 (417)
Q Consensus 116 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 195 (417)
+.+..|.++|.+.+ +.++..|+.+|..+...-+.......-...++.++.++.+.|..+.-.|+.+|..+..+.|-..+
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 35888999998888 99999999999999986444443333336899999999999999999999999999987765444
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
.+.. ....+..++ .+.++-+...++..+..+-- ......++..+.+++.+.|..++..++.++.+++..+.
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4333 467888888 68899999999999999821 12235677888899988999999999999999987543
Q ss_pred HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC
Q 014864 276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 316 (417)
+. .+. .+++.-+-.+|++.|+.++..|+.++-.+.+..
T Consensus 183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 21 111 246777889999999999999999999998764
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.78 E-value=6.3e-10 Score=85.93 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=93.0
Q ss_pred hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
...++.+..+|.++++.++..++++|+.+... .++.|+..|.++++.++..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 45677889999999999999999999876421 25788999999999999999999999863 1
Q ss_pred HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
..++.|...+.++ ++.||..|+|+|+++.. + ..++.|+.+++++++.++..|+++|.++
T Consensus 73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2378889999888 99999999999999852 2 3578888999999999999999998753
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.71 E-value=8.6e-08 Score=82.47 Aligned_cols=193 Identities=11% Similarity=0.103 Sum_probs=140.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchHHHHHHh-cCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCC-CCCh-
Q 014864 163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF- 238 (417)
Q Consensus 163 ~L~~ll~~~~~~i~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~-~~~~- 238 (417)
.+...+.+.+..-|..++..|.. ++.+.+.......+ ...+..|.+.+..+.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567788999999999999999 87543321100000 12355667777567889999999999999997643 2322
Q ss_pred hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHH-HHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh
Q 014864 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV-IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 239 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 317 (417)
.....++|.++..+.+..+.|+..+..++..++...+.....- .+ .+++.|...|++.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 4557789999999998888998888888777765331100000 11 267788999999999999999999999986554
Q ss_pred ---HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 318 ---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 318 ---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
......+...++|.+..++.+. ++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2222233357899999999999 99999999999999875
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.66 E-value=4.1e-09 Score=81.27 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=93.2
Q ss_pred hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHH
Q 014864 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194 (417)
Q Consensus 115 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 194 (417)
...++.++.+|++++ +.++..|+++|+.+.. ..++.|+.+|.++++.++..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 445888999999888 8999999999887643 136889999999999999999999999852 1
Q ss_pred HHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (417)
Q Consensus 195 ~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 270 (417)
..++.|+..+ .++++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1478888888 67889999999999999862 35788999999988999999999988653
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.65 E-value=4.1e-06 Score=84.54 Aligned_cols=300 Identities=14% Similarity=0.141 Sum_probs=211.6
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC--ch
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SE 150 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~ 150 (417)
..+..+++.+...+......++..+..++.+..... .+..+++..|...+.+.. .. ..|+.++..++... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 345566666766556666778888888766431111 111356888888888765 23 88899999999533 11
Q ss_pred hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
..+.++- +.+|.++..+.+....++..|-.++..++.. ++... ..+++.|+..+........+..++.++..|
T Consensus 88 ~~e~~~~-~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 88 SVEPYIV-QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp TTHHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcccchH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 2233222 6789999999988899999999888888743 33322 226888999995566789999999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHhhcCCCChhhHHHHHHH
Q 014864 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308 (417)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~ 308 (417)
+...|.........++|.+...+.+..++|...+..++..+|..-+ ..+ ..++|.|+..+.+++. ...++..
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHH
Confidence 9865433334457889999999998899999988888877765211 111 2478999999998853 4456666
Q ss_pred HHHhhcCCh--HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCCHHHHHHHhcc-CC
Q 014864 309 VGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLEN-AE 383 (417)
Q Consensus 309 L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~~l~~-~~ 383 (417)
|+.-+.-.. .-+-. =.+|.|..-|... ...+++.++.++.|+|. .+|.....++. .++|.|-...+. .+
T Consensus 235 l~~~tfv~~v~~~~l~----~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 235 LGATTFVAEVTPATLS----IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD 308 (986)
T ss_dssp HTTCCCCSCCCHHHHH----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred hhcCeeEeeecchhHH----HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence 766554333 11221 2478888888877 88999999999999997 67776666554 688888777654 58
Q ss_pred HHHHHHHHHHHHHh
Q 014864 384 FDIKKEAAWAISNA 397 (417)
Q Consensus 384 ~~v~~~a~~~L~nl 397 (417)
|++|.-|..++..+
T Consensus 309 pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 309 PEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887777766
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.51 E-value=4.9e-06 Score=76.28 Aligned_cols=268 Identities=14% Similarity=0.118 Sum_probs=169.3
Q ss_pred cCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHH--HHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC-
Q 014864 83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP--RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG- 159 (417)
Q Consensus 83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~--~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g- 159 (417)
.++++..+..|...+..+.+.. ....+.. ..++. .++..|......+.+..++.+|..+... ++.+..+.+.+
T Consensus 135 ~~dd~~~ll~a~~l~~ll~~~~-~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~ 210 (480)
T 1ho8_A 135 KGDFQTVLISGFNVVSLLVQNG-LHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEK 210 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHTSTT-TCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHH
T ss_pred cccchHHHHHHHHHHHHHhccC-CccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHccc
Confidence 3444555555555555543322 2211111 11123 4555566532256677899999999885 88888887643
Q ss_pred -ChhHHHHhhC----C-------------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCH--HHHHHHhcCCCchhHH
Q 014864 160 -AVPIFVKLLY----S-------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSML 219 (417)
Q Consensus 160 -~i~~L~~ll~----~-------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~~~~~ 219 (417)
.++.++.++. + ....++.+++.+++-++.+.+ ..+.+...+.. ..|+..+.....+.+.
T Consensus 211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvv 289 (480)
T 1ho8_A 211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVS 289 (480)
T ss_dssp HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence 3566654332 1 135678999999999987766 44555555543 5677778777889999
Q ss_pred HHHHHHHhhhhcCCCCCChh-----h-hhchHHHHHHhhcC---CChHHHHHHHHHHHHhccC------ChHHHHHHH--
Q 014864 220 RNATWTLSNFCRGKPQPPFD-----Q-VSPALPALAHLIHS---NDDEVLTDACWALSYLSDG------TNDKIQAVI-- 282 (417)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~-----~-~~~~l~~L~~ll~~---~~~~v~~~a~~~l~~l~~~------~~~~~~~~~-- 282 (417)
+-++.++.|+....+..... . ...+++ ++..|.. +|+++..+.-.....|... -++....+.
T Consensus 290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG 368 (480)
T 1ho8_A 290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSK 368 (480)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 99999999999875322111 1 133444 4444432 3776655543322222100 011111111
Q ss_pred --------------H----------cCChHHHHhhcCC----------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 014864 283 --------------E----------AGVFPRLAEFLMH----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328 (417)
Q Consensus 283 --------------~----------~~~~~~L~~~l~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 328 (417)
. ..++..|+.+|.+ .++.+..-||.=||.++...+.....+-+.|+
T Consensus 369 ~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~ 448 (480)
T 1ho8_A 369 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG 448 (480)
T ss_dssp CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred CcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc
Confidence 1 1346788888873 36778888999999999999988887777899
Q ss_pred hHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 329 LPCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
=..++.++.++ +++||.+|..++..+..
T Consensus 449 K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 449 KADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999987754
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.50 E-value=5.8e-05 Score=69.27 Aligned_cols=321 Identities=12% Similarity=0.092 Sum_probs=188.4
Q ss_pred CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCC--CcHHHHHHhCC-HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS--PPIEEVIRSGV-VPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (417)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~g~-i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 149 (417)
....+++.|.. ...++....+..+..++..++. .....+.+..- ...+.....+.++.-....+..++..++...+
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~ 157 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 157 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence 55778888875 6677777788888888876310 11222332222 22233322234424455566666566654322
Q ss_pred hhHHHHHhCCChh--HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchHHHHHHhcC--CHHHHHHHhc-------------
Q 014864 150 EHTKVVIDHGAVP--IFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN------------- 211 (417)
Q Consensus 150 ~~~~~i~~~g~i~--~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~------------- 211 (417)
...+.+- ..+. -++..|.+ ++...+..++.+|..+..... +|..+.+.+ .+++++.++.
T Consensus 158 ~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 158 HNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp CCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred ccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 2111110 1122 34445554 344556778888888887655 788776543 2566654432
Q ss_pred ---CCCchhHHHHHHHHHhhhhcCCCCCChhhhhc--hHHHHHHhhcC-CChHHHHHHHHHHHHhccCCh----HHHH-H
Q 014864 212 ---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP--ALPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ-A 280 (417)
Q Consensus 212 ---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~----~~~~-~ 280 (417)
......++..++.+++-|+..++......... .++.|+..++. ..++|..-++.++.|+..... .... .
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~ 314 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL 314 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 11145678888999999988743211111122 23556666654 468888889999999987652 2222 3
Q ss_pred HHHcCChHHHHhhcCCC---ChhhHHHHHHHHHHhh----------------------cCChHHHH-HHH----------
Q 014864 281 VIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIV----------------------TGDDMQTQ-CVI---------- 324 (417)
Q Consensus 281 ~~~~~~~~~L~~~l~~~---~~~v~~~a~~~L~~l~----------------------~~~~~~~~-~~~---------- 324 (417)
++..+++ .++..|... |+++... +..|.... .-++.... .+.
T Consensus 315 ~~~~~~l-~~l~~L~~rk~~Dedl~ed-l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 315 LLLGNAL-PTVQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHCHH-HHHHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHccch-HHHHHHhhCCCCcHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 3334444 455555432 4433222 11111111 11111111 111
Q ss_pred HcCChHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864 325 EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (417)
Q Consensus 325 ~~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~ 395 (417)
+..++..|+++|.+ +.++.+..-||.=++.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+.
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 23556789999973 227888999999999999977877777777899999999999999999999999998
Q ss_pred HhhC
Q 014864 396 NATS 399 (417)
Q Consensus 396 nl~~ 399 (417)
.+..
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 84
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.43 E-value=5.9e-05 Score=77.83 Aligned_cols=299 Identities=11% Similarity=0.075 Sum_probs=174.4
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhCCC---c--hhHHHHHh
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID 157 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~i~~ 157 (417)
++++.+...+++++...++ --+...+++.++++.+. .+|. + ++++..|+.||..+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3566777788888888875 23466778889999999 8885 3 789999999999998732 2 12211111
Q ss_pred C--CChhHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchHHHHHHhcCCHHHHHHHhcCCC
Q 014864 158 H--GAVPIF--------------VKLLYSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQP 214 (417)
Q Consensus 158 ~--g~i~~L--------------~~ll~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~ll~~~~ 214 (417)
. +.++.+ ...-...+.+.....+..+..+.. ..+..+..+. .++..|+.+. ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0 111111 111122345555555555544432 2222232221 1234455543 566
Q ss_pred chhHHHHHHHHHhhhhcCCC--CCChhhhh----chHHHHHHhhcCCC--------------------hH-HHHHHH-HH
Q 014864 215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND--------------------DE-VLTDAC-WA 266 (417)
Q Consensus 215 ~~~~~~~a~~~l~~l~~~~~--~~~~~~~~----~~l~~L~~ll~~~~--------------------~~-v~~~a~-~~ 266 (417)
+.++...++...+.+...-- ........ ..++.++.-+..++ ++ ..-... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 88888888888877776321 11222233 34444444433221 00 111011 23
Q ss_pred HHHhccCC-hHHHHHHHHcCChHHHHhhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-----
Q 014864 267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----- 338 (417)
Q Consensus 267 l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----- 338 (417)
|.+++.-. ++..+. +++.+...+.+ .+|..+..+++++|.++.+..+....-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 33332211 122221 23444444543 579999999999999998776543333334677888888864
Q ss_pred CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 339 NYKKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 339 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
+ ...++..++|++|.++. .+++... .++..|++.+.++++.++..|++++.+++..+.
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3 45677789999999876 3444333 356677888887889999999999999998654
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.23 E-value=4e-05 Score=66.82 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=124.7
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 154 (417)
...+++.|.+.+......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++-.+ ......
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence 467888899888889999999999977754 788999999999999999999988 89999999999999886 344434
Q ss_pred HH-hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHh--------cC--CHHHHHHHhc--CCCchhHHHH
Q 014864 155 VI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--------QG--GLVPLLAQLN--GQPKLSMLRN 221 (417)
Q Consensus 155 i~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--------~g--~i~~L~~ll~--~~~~~~~~~~ 221 (417)
++ ....|..+..++.+.+..+...|+..|..++..++.....+.+ .| .+..++.+|. +..|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 44 4467888899999999999999999999998766533333222 22 3678889994 2568899998
Q ss_pred HHHHHhhhhcCCC
Q 014864 222 ATWTLSNFCRGKP 234 (417)
Q Consensus 222 a~~~l~~l~~~~~ 234 (417)
+...+-.+....|
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 8887777666544
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.14 E-value=3.9e-05 Score=79.44 Aligned_cols=305 Identities=10% Similarity=0.050 Sum_probs=169.8
Q ss_pred HHhhhcCC---ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC------
Q 014864 78 MVAGVWSN---DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------ 148 (417)
Q Consensus 78 l~~~l~s~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~------ 148 (417)
++..+.++ ++.++..|++.+..+...- . .. .-..+++.++..|.+++ +.++..|+++|.+++...
T Consensus 460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~---~~-~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~~~~~~~~~ 533 (960)
T 1wa5_C 460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQL-T---KA-QLIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSP 533 (960)
T ss_dssp THHHHHCSSCSCHHHHHHHHHHHHHTGGGS-C---HH-HHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred hHHHhcCCCCCCceehHHHHHHHHHHHhhC-C---HH-HHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcccccccc
Confidence 34455665 8899999999999986542 1 11 12345888898888877 899999999999998741
Q ss_pred -ch-hHHHHHh--CCChhHHHHhhCCCC---HH--HHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHh----c
Q 014864 149 -SE-HTKVVID--HGAVPIFVKLLYSPS---DD--VREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQL----N 211 (417)
Q Consensus 149 -~~-~~~~i~~--~g~i~~L~~ll~~~~---~~--i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll----~ 211 (417)
++ ....+.. ..+++.|+.++.... .. ..+.++.+|+.++. .-..+-.. .++.|...+ .
T Consensus 534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~-----l~~~L~~~l~~~~~ 608 (960)
T 1wa5_C 534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAK 608 (960)
T ss_dssp CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTT
T ss_pred cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHh
Confidence 11 1111111 135556666666531 11 23456666665542 11112222 233344333 2
Q ss_pred CCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 014864 212 GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (417)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 290 (417)
...++.+...++.+++.++... +.........++|.+...|..+..++..++...++.+......... .. ..+++.+
T Consensus 609 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~-~~~~~~l 686 (960)
T 1wa5_C 609 NPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPE-SI-KPLAQPL 686 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCT-TT-GGGHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCH-HH-HHHHHHH
Confidence 3446777778899999988873 2223334467788888888776666777777777666532210000 00 0134444
Q ss_pred H--hhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH
Q 014864 291 A--EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQAV 366 (417)
Q Consensus 291 ~--~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l 366 (417)
. ..+... ......+++|.++....... +.. ..++..+..++.+. . ....++++++.++...+.. ....
T Consensus 687 ~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~---~~~~~~~l~~~~~~~~~~-~--~~~~a~~ll~~i~~~~~~~~~~~y 758 (960)
T 1wa5_C 687 LAPNVWELK--GNIPAVTRLLKSFIKTDSSI---FPDLVPVLGIFQRLIASK-A--YEVHGFDLLEHIMLLIDMNRLRPY 758 (960)
T ss_dssp TSGGGGCCT--TTHHHHHHHHHHHHHHHGGG---CSCSHHHHHHHHHHHTCT-T--THHHHHHHHHHHHHHSCHHHHGGG
T ss_pred cCHHHhcCC--CCchhHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCC-c--ccchHHHHHHHHHHHCCHHHHHHH
Confidence 4 444433 24445666676664322211 000 01222334444444 3 2488999999998743333 3333
Q ss_pred HHCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCHH
Q 014864 367 IEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHE 404 (417)
Q Consensus 367 ~~~~~i~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~ 404 (417)
+. .+++.++..+... ..++++..+..++.++..-+++
T Consensus 759 l~-~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 796 (960)
T 1wa5_C 759 IK-QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796 (960)
T ss_dssp HH-HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HH-HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHH
Confidence 32 3566666666654 4567666666666665433444
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.11 E-value=9.1e-05 Score=76.71 Aligned_cols=256 Identities=10% Similarity=0.098 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchHHHHHHhc-----
Q 014864 132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ----- 200 (417)
Q Consensus 132 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~------~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~----- 200 (417)
..+..|..+|..++...+ +.++. .+++.+...+. +++...++.|+.+++.++.....+... ...
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccc
Confidence 456677778877776432 12221 23344444444 467789999999999998542111000 000
Q ss_pred CCH----HHHHHHhcCC--CchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 014864 201 GGL----VPLLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 201 g~i----~~L~~ll~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 274 (417)
... ..++..+.+. .++-++..++|+++.++..- .......+++.++..|.+++..|+..|++++.+++...
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 111 1233334232 27889999999999999863 23456788999999998888999999999999988641
Q ss_pred -----------hHHHHHHHHcCChHHHHhhcCCCC-----hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--
Q 014864 275 -----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL-- 336 (417)
Q Consensus 275 -----------~~~~~~~~~~~~~~~L~~~l~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-- 336 (417)
.+.....+ ..+++.|+.++.... ......++.+|+.++....+....... .+++.+...+
T Consensus 528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHH
Confidence 11111111 125566667776641 113456677776665322111110100 1233333333
Q ss_pred --cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 337 --SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 337 --~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
+++.++..+..++-+++.++.. .++....+ ...++|.+...|.....+...++...+..+.
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 4443667777788888888864 44433333 3357788888887665666666666666654
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.08 E-value=0.00065 Score=71.03 Aligned_cols=299 Identities=11% Similarity=0.094 Sum_probs=165.7
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHhCCC--ch---hHHHHHh-
Q 014864 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID- 157 (417)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~i~~- 157 (417)
++..++..++.++..++.- -+...+....+++.+.+ ++. + ++++..|+.+|..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 4567788888888877642 22344556777777773 443 4 899999999999998752 21 1111111
Q ss_pred -CCChhHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchHHHHHHhcCCHHHHHHHhcCCCc
Q 014864 158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (417)
Q Consensus 158 -~g~i~~L~~-ll-------------~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~ll~~~~~ 215 (417)
.+.+..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ..+++.++... ..++
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222211 11 12234444444444433321 111122221 12455666655 5567
Q ss_pred hhHHHHHHHHHhhhhc----CCCCCC--hhhhhchHHHHHHhhcCC-------------------Ch---HHHHHHHHHH
Q 014864 216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL 267 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~----~~~~~~--~~~~~~~l~~L~~ll~~~-------------------~~---~v~~~a~~~l 267 (417)
.++...++..+..++. .+.... .......++.++..+..+ |. .....+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 8888888888888877 321111 123344555555544221 10 1122344455
Q ss_pred HHhccCChHHHHHHHHcCChHHHHhhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-----CC
Q 014864 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-----NY 340 (417)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~ 340 (417)
..++...... ++.. +.+.+-..+. +.++..+..+++++|.++.+.........-..+++.+..+... +
T Consensus 438 ~~l~~~~~~~---~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVID---TEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHH---HHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHH---HHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 5554332221 1111 2344444454 3578899999999999986544332111122345555554332 2
Q ss_pred chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 341 KKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 341 ~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.+.++..++|+++.++. ..++... .+++.|+..+.++++.|+..|++++.+++..+.
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 45666679999998875 2332222 367788888888899999999999999998644
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.07 E-value=0.00013 Score=75.78 Aligned_cols=250 Identities=10% Similarity=0.116 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhCCCc-hhHHHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHH
Q 014864 133 LQFEAAWALTNIASGTS-EHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL 206 (417)
Q Consensus 133 ~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 206 (417)
.|..+..+|..++..-+ .....+ ++.+-..+.+ .+...++.++++++.++....... ...++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l 506 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence 55666777777666433 111111 2222223322 567789999999999986644321 1233444
Q ss_pred HHHh---cC-CCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 014864 207 LAQL---NG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 282 (417)
Q Consensus 207 ~~ll---~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 282 (417)
+.++ .. +.++.++..++|+++.++..-... ......+++.++..+. +.++..|++++.+++..........+
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 4433 21 347889999999999999753221 2456778888888882 78999999999999976554443333
Q ss_pred HcCChHHHHhhcCCC--ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHH----hhcCCC-chhHHHHHHHHHHH
Q 014864 283 EAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLN----LLSGNY-KKSIKKEACWTVSN 354 (417)
Q Consensus 283 ~~~~~~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~----ll~~~~-~~~v~~~a~~~L~n 354 (417)
+ .++..+..++..+ +...+..++.+++.++...+ ......+. .+++.++. +++... ++..+.....++..
T Consensus 583 ~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 660 (971)
T 2x1g_F 583 D-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNM 660 (971)
T ss_dssp H-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 3 3667777777763 56788899999999976432 22221221 23334433 333321 22233444444444
Q ss_pred Hh---c--CC-----------HHHHHHHHHCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhC
Q 014864 355 IT---A--GN-----------REQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATS 399 (417)
Q Consensus 355 l~---~--~~-----------~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~~L~nl~~ 399 (417)
++ . +. ++....+. ..+++.+..++.. .+..+.+.+++++++++.
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 43 2 11 11112222 3678888888764 367999999999999665
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.07 E-value=8.5e-05 Score=64.79 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=125.1
Q ss_pred HHHHhcCCCchhHHHHHHHHHhhhh-cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc
Q 014864 206 LLAQLNGQPKLSMLRNATWTLSNFC-RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 284 (417)
Q Consensus 206 L~~ll~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 284 (417)
++..| .+.+...++.++.-|..+. .+..-....+..+++..|+..+...+...+.+++.++..+..+.++.-..+-..
T Consensus 123 iiekL-~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKL-YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHH-HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHH-hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 33444 2345556777777777733 332333334448899999999999999999999999999998766554444455
Q ss_pred CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc----------CChHHHHHhhc---CCCchhHHHHHHHH
Q 014864 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----------QALPCLLNLLS---GNYKKSIKKEACWT 351 (417)
Q Consensus 285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~---~~~~~~v~~~a~~~ 351 (417)
.++..+..++.+.+..+...|+..|-.++..++.....+.++ ..++.++.+|+ +. +.+++..|.-.
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHHHH
Confidence 688999999998889999999999999998876554433322 24778999997 55 88888887776
Q ss_pred HHHHhcC--CHH----HHHHHHHCCCHHHHHHHhccC--CHHHHH
Q 014864 352 VSNITAG--NRE----QIQAVIEANIIGPLVALLENA--EFDIKK 388 (417)
Q Consensus 352 L~nl~~~--~~~----~~~~l~~~~~i~~L~~~l~~~--~~~v~~ 388 (417)
+-.+..+ +.+ ....+-+.|+-..+.+.++.. +++++.
T Consensus 281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 6666543 223 222233566666677767654 555544
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.06 E-value=0.00016 Score=74.96 Aligned_cols=303 Identities=10% Similarity=0.053 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHh-------hcCCCC--HHHHHHHHHHHHHHhCCCchhH---
Q 014864 85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF-------LLREDY--PQLQFEAAWALTNIASGTSEHT--- 152 (417)
Q Consensus 85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~l-------L~~~~~--~~~~~~a~~~L~~l~~~~~~~~--- 152 (417)
+++..+..|+.++..++...........+ ..++|.++.+ +...+. ++.....+..+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999998753111111111 1123333332 233331 2666667777776664222111
Q ss_pred ---------HHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchHHHHHHh--cCCHHHHH
Q 014864 153 ---------KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGD---------SPRCRDLVLS--QGGLVPLL 207 (417)
Q Consensus 153 ---------~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~---------~~~~~~~~~~--~g~i~~L~ 207 (417)
..+. ..++.++.+... .++++...+++.+..++.. .+.....+.. ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345566665533 4678889999988887641 1111111110 12344445
Q ss_pred HHhcCCCc--------------hhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC-----CChHHHHHHHHHHH
Q 014864 208 AQLNGQPK--------------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-----NDDEVLTDACWALS 268 (417)
Q Consensus 208 ~ll~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~l~ 268 (417)
..+...++ ...+..+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 55422111 1355667777777775433 23334444455455543 56778899999999
Q ss_pred HhccCChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHH
Q 014864 269 YLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347 (417)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 347 (417)
.++.+........+.. +++.+..+.. +.++.++..+++++|.++..-....+.+ ..+++.++..+. +.++..
T Consensus 490 ~iae~~~~~~~~~l~~-l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~----~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIPR-LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN----SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHHH-HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH----SSCHHH
T ss_pred HHHhhcChhhhHHHHH-HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC----hHHHHH
Confidence 9987755432211111 3332222221 3478999999999999884322111111 134566666662 579999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCC
Q 014864 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~ 401 (417)
|++++.+++......+...++ .++..|..++..+ +.+.+..+..+++.++...
T Consensus 563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 999999999766655544443 5777778888763 5788999999999988753
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.99 E-value=0.00011 Score=76.19 Aligned_cols=309 Identities=11% Similarity=0.045 Sum_probs=167.5
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHH----HHH--hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE----VIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~ 148 (417)
++.+++.+ +++..+..|+.++..++.....+.... ++. .+..+.+...+...+ .+.....+..+..++...
T Consensus 243 l~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~ 319 (963)
T 2x19_B 243 IQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENH 319 (963)
T ss_dssp HHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHh
Confidence 34444444 356788899999999987532221111 111 112222333334445 555566666666665421
Q ss_pred chhH-------HHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chHHHHHHh--cCCHHHH
Q 014864 149 SEHT-------KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDS--------PRCRDLVLS--QGGLVPL 206 (417)
Q Consensus 149 ~~~~-------~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~~~~--------~~~~~~~~~--~g~i~~L 206 (417)
+... ..+. ..++.++.+... .++.+...++..+..++.+. +.....+.. ...++.+
T Consensus 320 ~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 397 (963)
T 2x19_B 320 SRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL 397 (963)
T ss_dssp HHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1110 1111 345555555553 34556666666666665411 111111110 0123444
Q ss_pred HHHhcCCCch--------------hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----cCCChHHHHHHHHHHH
Q 014864 207 LAQLNGQPKL--------------SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----HSNDDEVLTDACWALS 268 (417)
Q Consensus 207 ~~ll~~~~~~--------------~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll----~~~~~~v~~~a~~~l~ 268 (417)
+..+....+. +.+..+..++..++...+ ......+++.+...+ .+.+...++.++++++
T Consensus 398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~ 474 (963)
T 2x19_B 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ 474 (963)
T ss_dssp HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4444221111 124455556666554322 122233444444555 4567788999999999
Q ss_pred HhccCChHHHHHHHHcCChHHHHhh---cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHH
Q 014864 269 YLSDGTNDKIQAVIEAGVFPRLAEF---LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345 (417)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~L~~~---l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 345 (417)
.++.+..... ...++.++.. +.++++.++..+++++|.++..-..... .-..+++.++..|. ++.|+
T Consensus 475 ~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl~~l~~~l~---~~~V~ 544 (963)
T 2x19_B 475 SIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVLPLVLHALG---NPELS 544 (963)
T ss_dssp HHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTHHHHHHHTT---CGGGH
T ss_pred HHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHhC---CchHH
Confidence 9987643211 1123333333 2345788999999999999853222222 22478888998885 37899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCC
Q 014864 346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~ 402 (417)
..|++++.+++...+......+ ..++..|..++..+ +.+.+..+..+++.++....
T Consensus 545 ~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 9999999999964332221111 13455555666642 57889999999999987654
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.98 E-value=3.4e-05 Score=79.39 Aligned_cols=302 Identities=12% Similarity=0.022 Sum_probs=167.9
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC--chhHHHHHhCCCh
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV 161 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i 161 (417)
+.++.+...++.++...++ --+...++..++++.+..+|.. ++++..|+.||+.+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4678888999999999975 2456677788899999999874 789999999999998854 2333333322011
Q ss_pred hHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hHHHH--HHhcCCHHHHHHHhcCCCchhHHHHHHHHH
Q 014864 162 PIFVKLLY--SPSDDVREQAVWALGNIA------GDSP-----RCRDL--VLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226 (417)
Q Consensus 162 ~~L~~ll~--~~~~~i~~~a~~~L~nl~------~~~~-----~~~~~--~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l 226 (417)
...+..+. ..|.+..+..+..+..++ ...+ +.+.. -.-.+.++.++.++ .+++.++...++.++
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11122222 356666554444443332 1111 11100 11124778888888 566667777676666
Q ss_pred hhhhcCC---CC--CChh----hhhchHHHHHHhhcCC-----Ch-----------HHHHHHHHHHHHhc-cCChHH-HH
Q 014864 227 SNFCRGK---PQ--PPFD----QVSPALPALAHLIHSN-----DD-----------EVLTDACWALSYLS-DGTNDK-IQ 279 (417)
Q Consensus 227 ~~l~~~~---~~--~~~~----~~~~~l~~L~~ll~~~-----~~-----------~v~~~a~~~l~~l~-~~~~~~-~~ 279 (417)
..+.... +. .... .....++.++.-+..+ +. +.|.... .+...+ .-.++. ..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 6655321 11 1112 2234444444444321 11 2344433 332222 112221 11
Q ss_pred HHHHcCChHHHHhhcC---CCChhhHHHHHHHHHHhhcCChHHHHHH-----HHcCChHHHHHhhc-----CCCchhHHH
Q 014864 280 AVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK 346 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~-----~~~~~l~~L~~ll~-----~~~~~~v~~ 346 (417)
.+.+. +.+.+-..+. +.+|..++.++.+++.++.+.......+ .-..+++.+..+++ .+ ++.|+.
T Consensus 436 ~~~~~-i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYSA-ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHHH-HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 11111 2223333342 3458889999999999987654321111 00123455666654 45 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHh------ccCCHHHHHHHHHHHHHhhCCC
Q 014864 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALL------ENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l------~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
.++|+++..+.--.. +...++.++..+ .+++.+++..|+.++.+++..+
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 999999999862111 123455555544 3456789999999999998765
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.95 E-value=0.0036 Score=63.49 Aligned_cols=265 Identities=12% Similarity=0.088 Sum_probs=176.1
Q ss_pred CHHHHHhhhcCCChHHHHHHHHHHHHhhhCCC-CCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-chh
Q 014864 74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEH 151 (417)
Q Consensus 74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-~~~ 151 (417)
.+..+.+.+.+.... ..|+..+..++.... .++. +-.--+.+|.++..+.+.. ..++..|..++..+...- ++.
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence 455666666553222 778888888874431 2223 2222367999999998888 789888877777766632 333
Q ss_pred HHHHHhCCChhHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 152 TKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
.. .++|.|+..|.+. ....+..|+.++..++...+..-..-+ -.++|.+...+ -+..+++...+..++..+|
T Consensus 131 ~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 131 IK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp HH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred HH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence 32 4588999988754 588999999999999976553222211 12566677777 7888999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHH
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~ 310 (417)
..-.+.+ +.+.+|.|++.+.+++. ...++..|+.-+.-.+-... .+. =.+|.|..-|......++..++-++.
T Consensus 204 ~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~-~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 204 ETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPA-TLS-IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHH-HHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecch-hHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence 7644433 36789999999987743 33344444433222111101 011 13566777777778888899999999
Q ss_pred HhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 014864 311 NIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 311 ~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 356 (417)
|+|.--+ ......+-..++|.+-+....-.+|++|..|..++..+.
T Consensus 277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 9986432 233334556788888888877669999988888877773
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00045 Score=60.32 Aligned_cols=191 Identities=12% Similarity=0.100 Sum_probs=127.9
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcH-HHHH--HhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCc
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS 149 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 149 (417)
..+| +-+.|.+.++..|..|+..+.+++........ +... -....+.+-..+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3455 66889999999999999999998865321111 1111 1234566777888777 8999999999998876321
Q ss_pred ------hhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHH
Q 014864 150 ------EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222 (417)
Q Consensus 150 ------~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a 222 (417)
......+ ..+++.|+. .+.+....++..+..++..++...... .. +++.++..+ .+.++.++..+
T Consensus 88 ~~~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~ 159 (278)
T 4ffb_C 88 SSSLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA 159 (278)
T ss_dssp ---CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred hhhcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence 1111122 256777775 578888999999998888776432211 11 234555556 77889999888
Q ss_pred HHHHhhhhcCC--CCCC-hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 014864 223 TWTLSNFCRGK--PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 223 ~~~l~~l~~~~--~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 273 (417)
+..|..+.... .... ...+..+++.+..++.+.|+.|+..+..++..+-..
T Consensus 160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 88888776542 1111 223455677788899999999999999998877543
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00067 Score=59.18 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=125.9
Q ss_pred HHHHhcCCCchhHHHHHHHHHhhhhcCCCCC-----ChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-----
Q 014864 206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN----- 275 (417)
Q Consensus 206 L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~----- 275 (417)
+-..+ .+.+...+..++..+..+....+.. .........+.+...+.+.+..+...++.++..++....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45666 7889999999999998887654221 112234566777888888899999999999988865321
Q ss_pred -HHHHHHHHcCChHHHHh-hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHH
Q 014864 276 -DKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353 (417)
Q Consensus 276 -~~~~~~~~~~~~~~L~~-~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 353 (417)
......+ ..+++.|+. .+.+....++..++.++..++........ +++.+...+.+. ++.++.+++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K-npkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK-LPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence 1111122 236777775 47888888999999888777644322111 245667778888 9999999999888
Q ss_pred HHhc--CCHH-HHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 354 NITA--GNRE-QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 354 nl~~--~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
++.. |... .....+. .+++.+..++.+.++.||..|..++..+....
T Consensus 165 ~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 8864 2110 0111111 35567778889999999999999998886653
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.69 E-value=0.0066 Score=62.72 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=97.5
Q ss_pred hHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHH-HHHHHHcCChHHHHhhcCC-----CChhhHHHHHHHHHHhhcC
Q 014864 244 ALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDK-IQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTG 315 (417)
Q Consensus 244 ~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~ 315 (417)
.++.+...+.. .+...++.++|+++.++.+..+. ...++.. +++.|+.++.+ +...++..+++++|.++.-
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~-vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT-VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 34444444443 47889999999999999876543 2233333 67778887763 2334566788999988753
Q ss_pred ChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------CCCHH----HHHHHhccCCHH
Q 014864 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE------ANIIG----PLVALLENAEFD 385 (417)
Q Consensus 316 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~----~L~~~l~~~~~~ 385 (417)
-...... + ..++..++..+.++ ++.++..|||++.++|..+.. .+.. ...++ .+......-+++
T Consensus 531 l~~~~~~-L-~~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~---~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~ 604 (1023)
T 4hat_C 531 LKAHWNF-L-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQ 604 (1023)
T ss_dssp HHHCHHH-H-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHH
T ss_pred HhccHHH-H-HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCchhHHHHHHHHHHHHHhCCHH
Confidence 2222111 1 13456677777666 789999999999999974332 2221 11333 334444445677
Q ss_pred HHHHHHHHHHHhhCCCC
Q 014864 386 IKKEAAWAISNATSGGT 402 (417)
Q Consensus 386 v~~~a~~~L~nl~~~~~ 402 (417)
-+..+..+++.++....
T Consensus 605 ~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 605 QVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 78899999999988864
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.66 E-value=0.0072 Score=63.15 Aligned_cols=235 Identities=11% Similarity=0.099 Sum_probs=130.2
Q ss_pred CChhHHHHhhCCCCHHHHHHHHHHHHHhhC----CCc---hHHHHHHhcCCHHHHHHHhcCCC-----------------
Q 014864 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAG----DSP---RCRDLVLSQGGLVPLLAQLNGQP----------------- 214 (417)
Q Consensus 159 g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~----~~~---~~~~~~~~~g~i~~L~~ll~~~~----------------- 214 (417)
.+++.++.+...++.++...++..+..++. ... .++..+ . ..++.++..+...+
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~ 421 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-S-QLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-H-HHHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-H-HHHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence 356777777677888999999888887765 211 111111 1 12334444432110
Q ss_pred -ch---hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC--CChHHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 014864 215 -KL---SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288 (417)
Q Consensus 215 -~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 288 (417)
+. ..+..+..+|..++...+ ......+.+.+...+.. .+...++.++++++.++....+....-.-..+++
T Consensus 422 ~d~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~ 498 (1049)
T 3m1i_C 422 KESDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence 00 223445556666663321 12223344555555543 4678899999999999865433211111112455
Q ss_pred HHHhhcCC-----CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 014864 289 RLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363 (417)
Q Consensus 289 ~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 363 (417)
.+..+... +.+.++..+++++|.++..-..... .+ ..+++.++..+.++ ++.|+..||+++.+++...+...
T Consensus 499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l-~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l 575 (1049)
T 3m1i_C 499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHF 575 (1049)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HH-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 55554332 2344455688999987743222212 11 24577788888887 89999999999999997433221
Q ss_pred H--------HHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 364 Q--------AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 364 ~--------~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
. ..+ ..++..+..++..-+.+-......+++.++....
T Consensus 576 ~~~~~~~~~p~~-~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 576 VIQQPRESEPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HSCCTTCSSCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred hcccCCCCCcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 1 111 1234444455555455556677777777765543
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.64 E-value=0.011 Score=60.97 Aligned_cols=297 Identities=12% Similarity=0.122 Sum_probs=163.9
Q ss_pred CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHhCCC-chhHHHHHh--CC
Q 014864 84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG 159 (417)
Q Consensus 84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L-v~lL~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~--~g 159 (417)
++++.+...++.++..+++ =-+...+++.++++.+ ..+|. + ++.+..|+.||+.+.+.. ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4567777778888888864 2346678888989988 47764 3 789999999999998743 222222211 01
Q ss_pred ChhHHHHhhC-------------CCCHHHHHHHHHHHHHhhCC-------CchHHHHHHhcCCHHHHHHHhcCCCchhHH
Q 014864 160 AVPIFVKLLY-------------SPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219 (417)
Q Consensus 160 ~i~~L~~ll~-------------~~~~~i~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 219 (417)
.+..+..++. ..+.+....-+..+..+... .+..+..+.. ++..++.+- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 2222222221 12234444444444443321 1111221111 233344444 56788888
Q ss_pred HHHHHHHhhhhcC----CC-----CC------------ChhhhhchHHHHHH----hhcCCC------------------
Q 014864 220 RNATWTLSNFCRG----KP-----QP------------PFDQVSPALPALAH----LIHSND------------------ 256 (417)
Q Consensus 220 ~~a~~~l~~l~~~----~~-----~~------------~~~~~~~~l~~L~~----ll~~~~------------------ 256 (417)
+.+...+..|... .+ .+ ......+++..|.. -+..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 8888877766542 11 00 01112333333333 222211
Q ss_pred --h-----HHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHhhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 014864 257 --D-----EVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326 (417)
Q Consensus 257 --~-----~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 326 (417)
. ++..++ +.+++.-. ++.... .++.+...+.. .+|.....+++++|.++..-.+....-.-.
T Consensus 449 d~~~~~ly~~mrd~---L~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRET---LVYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp SCHHHHHHHHHHHH---HHHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hcchHHHHHHHHHH---HHHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 0 122223 33333212 222221 23444444443 468899999999999985443322212222
Q ss_pred CChHHHHHhhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 327 QALPCLLNLLSGNY----KKSIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 327 ~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
.+++.|+.+..+.. ...++...+|++|..+. .+++... .++..|++.+.+.++.++..|+.++..++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 46677777765441 23456667799998875 2344333 356688888888899999999999999987
Q ss_pred CCC
Q 014864 400 GGT 402 (417)
Q Consensus 400 ~~~ 402 (417)
.+.
T Consensus 596 ~C~ 598 (1073)
T 3gjx_A 596 KCR 598 (1073)
T ss_dssp HTG
T ss_pred HHH
Confidence 654
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.61 E-value=0.003 Score=55.06 Aligned_cols=240 Identities=14% Similarity=0.165 Sum_probs=161.4
Q ss_pred HHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----HHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhh
Q 014864 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC 230 (417)
Q Consensus 155 i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~ 230 (417)
+...+.+..|+..|..-+.+.+..+..++.++...... ..+.+.. -...+..++....++++.-.+...|....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 44458888999999888899999999999999865543 2233332 23334444434446666666666677666
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcCCCChhhHHHHHH
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPALR 307 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~~~~~~v~~~a~~ 307 (417)
+...-.......+.+-.+...++.++=++..+|..++..+.......+..++.. .++...-.+|.+++.-++..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 653322223334555567778888899999999999998876666555555554 35677788999999999999999
Q ss_pred HHHHhhcCChH---HHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHH--CCCHHHHHHHh
Q 014864 308 TVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIE--ANIIGPLVALL 379 (417)
Q Consensus 308 ~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~i~~L~~~l 379 (417)
.||.+...... ...++-+..-+..++.+|++. +..++.+|..++--++++ +++....++. ..++..|-++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 99999876432 233333456788899999999 999999999999988873 4444444443 33444444444
Q ss_pred ccC--CHHHHHHHHHHHHHh
Q 014864 380 ENA--EFDIKKEAAWAISNA 397 (417)
Q Consensus 380 ~~~--~~~v~~~a~~~L~nl 397 (417)
.+. |.....+=...+..|
T Consensus 311 ~d~~eDeqF~dEK~~lI~~I 330 (341)
T 1upk_A 311 NDRTEDEQFNDEKTYLVKQI 330 (341)
T ss_dssp TTC-CCSHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHH
Confidence 433 445555544444444
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.54 E-value=0.00013 Score=67.62 Aligned_cols=249 Identities=17% Similarity=0.124 Sum_probs=154.1
Q ss_pred hhhccCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCc-HHHHHHhCCHHHHHHhhc---------CCCCHHHHHHHH
Q 014864 69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLL---------REDYPQLQFEAA 138 (417)
Q Consensus 69 ~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~g~i~~Lv~lL~---------~~~~~~~~~~a~ 138 (417)
++..+..+.|+..|-++.++++.-|+..||.++....... ...-.+..+.-.|+-.+. +.--..+|+.|+
T Consensus 170 eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 170 ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp CSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 3444566888889999999999999999999886542100 000000122333333222 222358999999
Q ss_pred HHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhH
Q 014864 139 WALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218 (417)
Q Consensus 139 ~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 218 (417)
.+|+.+ ..-+.. ..++..++..+..+..+++..++-.|..+. +-..+ -.++++.++.-| .+.|.++
T Consensus 250 QtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDV 315 (800)
T 3oc3_A 250 YLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDI 315 (800)
T ss_dssp HHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHH
T ss_pred HHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHH
Confidence 999999 643433 345555555557788999999999998881 11111 123566777777 7788999
Q ss_pred HHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC-CC-hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (417)
Q Consensus 219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (417)
+..|+.+|..++ .+ ..+..++..+-..|.+ +| ..-....+..|+.|+..+.. .......+|+|.+++.|
T Consensus 316 RAVAAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence 999999999998 22 2234444444444433 22 11223445555555543321 01123689999999999
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HHHhhcCCCchhHHHHHHHHH
Q 014864 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC-LLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 297 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~ll~~~~~~~v~~~a~~~L 352 (417)
+-..||..+++++..+. ... ++.. +..+|-.. +++++..+..+-
T Consensus 387 tITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp SSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 99999999999998887 221 1222 23334444 777776665444
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.54 E-value=0.0026 Score=54.29 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=117.8
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh---cCCCchhHHHHHHHHHhhhh----cCCC
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---NGQPKLSMLRNATWTLSNFC----RGKP 234 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~~a~~~l~~l~----~~~~ 234 (417)
+.+...|-+.+..-+..++..|.......+. ..+. .+..+++-+ .-+++..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555566777777777776665543332 1111 222233222 13567777777777776653 3222
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
.........++|.|+.-+.++.+.++..+-.++..+....+. ..+++.+..-+.+.++..+..++..++.+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 233333467899999999888888988877777665431111 1256778888999999999999999999864
Q ss_pred CChHHHHHHHHcCCh---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 014864 315 GDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA 357 (417)
Q Consensus 315 ~~~~~~~~~~~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 357 (417)
..... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 32211 23468 9999999998 99999999999997765
No 103
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.51 E-value=0.00054 Score=63.60 Aligned_cols=244 Identities=14% Similarity=0.081 Sum_probs=156.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhC--CChhHHHHhh--CC-----CC---HHHHHHHHHHHH
Q 014864 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLL--YS-----PS---DDVREQAVWALG 184 (417)
Q Consensus 117 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll--~~-----~~---~~i~~~a~~~L~ 184 (417)
+...|+.-|-++.| ++|.-|+-+|+.+.............. ...-.|+-++ +. +| ..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 45566666666774 999999999999876322110000111 2222222222 11 12 479999999999
Q ss_pred HhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHH
Q 014864 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264 (417)
Q Consensus 185 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 264 (417)
.+ ..-+.- ..++..++..+ .....+++..++-.|.++..--. ...++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 99 554432 34455555544 56678999999999999911111 1578899999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHhhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCch
Q 014864 265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342 (417)
Q Consensus 265 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 342 (417)
.+|.-++ .. +.... ++..+...|.+-+ ..-....+..|+.++..+... -.....+|.|..++.|+ -.
T Consensus 321 etLiPIA-~p-~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP-IT-DSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC-CS-STHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc-ch-hhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999998 22 22332 3445555555432 223345566777777655321 11237899999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014864 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS 395 (417)
Q Consensus 343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~ 395 (417)
.||..+..+|..+. +......+. .++|-..+.+++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence 99999999998887 233222222 23455678888888877764
No 104
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.48 E-value=0.013 Score=51.15 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=147.2
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhh---h---hchHHHHHHhhcCCChHHHHHHHHHHHH
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---V---SPALPALAHLIHSNDDEVLTDACWALSY 269 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~---~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 269 (417)
.+...+.+..|+..+ ..-+-+.++.++.++.++.+......... + ..++..|+..-. ++++...+-..|..
T Consensus 73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 445667788888888 77788999999999999998764332221 1 233444444433 33333333333444
Q ss_pred hccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhcCCCchhHHH
Q 014864 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKK 346 (417)
Q Consensus 270 l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~ 346 (417)
+. ..+.....++..+.+-.+.++++.++-++..-|..++-.+.+.+.......+.. .+...+-.+|.++ +.-.|+
T Consensus 150 ci-r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR 227 (341)
T 1upk_A 150 CI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR 227 (341)
T ss_dssp HH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred HH-HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence 43 455566778888888899999999999999999999999988887666666654 4566777889998 999999
Q ss_pred HHHHHHHHHhcC--CHHHHHHHH-HCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 014864 347 EACWTVSNITAG--NREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401 (417)
Q Consensus 347 ~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 401 (417)
.+...|+.+... +.......+ +..-+..++.+|.+....++.+|..++.-++...
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999999864 444444444 4456888999999999999999999999988875
No 105
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.36 E-value=0.0096 Score=61.62 Aligned_cols=220 Identities=14% Similarity=0.144 Sum_probs=127.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCC
Q 014864 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202 (417)
Q Consensus 126 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll---~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~ 202 (417)
.+.+ -..+..++++++.++.+-.... ...++.++..+ .++++.++..++|+++.++..-.... ..+ ..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHH
Confidence 3444 6788899999999998643311 12334444433 33678899999999999984311111 222 347
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhccCCh-HHHH
Q 014864 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 279 (417)
Q Consensus 203 i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~-~~~~ 279 (417)
++.++..+ .+ +.++..|++++.+++...+..-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888888 33 7899999999999997543222233455666666667653 56788888899998876442 3333
Q ss_pred HHHHcCChHHHHhhc----CCC-ChhhHH---HHHHHHHHhhcCCh---H------------------HHHHHHHcCChH
Q 014864 280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDD---M------------------QTQCVIEYQALP 330 (417)
Q Consensus 280 ~~~~~~~~~~L~~~l----~~~-~~~v~~---~a~~~L~~l~~~~~---~------------------~~~~~~~~~~l~ 330 (417)
..++. +++.+...+ ..+ ++..+. ..+.+|+.+...-. . ..-..+...+++
T Consensus 608 ~~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 33332 444444433 222 333333 44455544442210 0 001112234555
Q ss_pred HHHHhhcCC-CchhHHHHHHHHHHHHhc
Q 014864 331 CLLNLLSGN-YKKSIKKEACWTVSNITA 357 (417)
Q Consensus 331 ~L~~ll~~~-~~~~v~~~a~~~L~nl~~ 357 (417)
.+..++... .+..+.+.+|.+++.++.
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 555555321 156788888888887653
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.33 E-value=0.00024 Score=60.19 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcC
Q 014864 248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327 (417)
Q Consensus 248 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 327 (417)
+..++.++++.|+..++..+ ..+.|..++.++++.|+..+...++
T Consensus 175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence 33455556666666655431 2345667777777777777777654
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHH
Q 014864 328 ALPCLLNLLSGNYKKSIKKEACWTV 352 (417)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L 352 (417)
.+.|..+ +++ ++.||..+...|
T Consensus 220 -~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp -HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred -HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 2344444 666 888888776544
No 107
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.33 E-value=0.00031 Score=59.47 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=84.3
Q ss_pred hHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhh
Q 014864 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV 241 (417)
Q Consensus 162 ~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 241 (417)
+.|..++.+++..++..++..+ . ...+..++ ++++..++..++..+ .
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~----------- 147 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P----------- 147 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C-----------
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C-----------
Confidence 3455566666777776665532 0 01222333 666777777666521 0
Q ss_pred hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
.+.+..++.++++.|+..++..+ ..+.+..++.++++.|+..+...+
T Consensus 148 ---~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~d~~VR~aaa~~l------------ 194 (244)
T 1lrv_A 148 ---PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDPEPEVRRIVASRL------------ 194 (244)
T ss_dssp ---GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCSSHHHHHHHHHHC------------
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCCCHHHHHHHHHhC------------
Confidence 11234555666777777666531 123455666777888887776542
Q ss_pred HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (417)
Q Consensus 322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L 394 (417)
..+.|..++.++ ++.||..++..++ .+.|..+ .++++.|+..|...|
T Consensus 195 ------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 ------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp ------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred ------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 134577778887 8888888877653 2344444 788899998887654
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.31 E-value=0.0055 Score=52.23 Aligned_cols=176 Identities=10% Similarity=0.082 Sum_probs=121.0
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhh----cCCCCHHHHHHHHHHHHHHhC----C
Q 014864 76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL----LREDYPQLQFEAAWALTNIAS----G 147 (417)
Q Consensus 76 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL----~~~~~~~~~~~a~~~L~~l~~----~ 147 (417)
+.+...|.+.|...+..|+..|...+... . +.++. .+..++.++ .+.+ ..+...++..|..+.. .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~---~-~~~~~--~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS---P-RSLLS--NSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC---H-HHHHH--THHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC---h-HHHHH--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhc
Confidence 56777888889999999999999887542 1 12211 122233332 3555 7888888888877643 1
Q ss_pred CchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHh
Q 014864 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227 (417)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~ 227 (417)
.......-. .-.+|.|+.-+.++.+.+++.+-.++..++.-.+. ..+.+.++.-+ .+.+...+..++..+.
T Consensus 122 ~y~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 122 ETPMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIE 192 (266)
T ss_dssp TCCCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred cccchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHH
Confidence 111111111 13679999999999999999988888777532221 12456677767 7788999999998888
Q ss_pred hhhcCCCCCChhhhhchH---HHHHHhhcCCChHHHHHHHHHHHHhc
Q 014864 228 NFCRGKPQPPFDQVSPAL---PALAHLIHSNDDEVLTDACWALSYLS 271 (417)
Q Consensus 228 ~l~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~l~~l~ 271 (417)
.+....... ....+ |.+..++.+.|..|+..|+.++..+-
T Consensus 193 ~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 193 YYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 887654322 13467 99999999999999999999988654
No 109
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.12 E-value=0.012 Score=60.53 Aligned_cols=266 Identities=10% Similarity=-0.011 Sum_probs=143.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hHHHHHHhcCCHHH
Q 014864 128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRDLVLSQGGLVP 205 (417)
Q Consensus 128 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~--~~~~~~~~~g~i~~ 205 (417)
.+ +.+...++.+|.....- -....+++.+.++.++.+|.+ ++++..|+.+|..+..... ..+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 78999999999998873 234556666888889988864 8999999999999985433 22222222201112
Q ss_pred HHHHhcC-CCchhHHHHHHHHHhhhh------cCCCC-CC-------hhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864 206 LLAQLNG-QPKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (417)
Q Consensus 206 L~~ll~~-~~~~~~~~~a~~~l~~l~------~~~~~-~~-------~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 270 (417)
.+..+.. ..|.++.+..+..+..++ ...+. .. .....+.++.++.++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 2222211 456666655544443332 11121 11 133467899999999988888877666554443
Q ss_pred ccC---------ChHHHHHHHHcCChHHHHhhcCCCC-----h-----------hhHHHHHHHHHHhhcCChHHHHHHHH
Q 014864 271 SDG---------TNDKIQAVIEAGVFPRLAEFLMHPS-----P-----------SVLIPALRTVGNIVTGDDMQTQCVIE 325 (417)
Q Consensus 271 ~~~---------~~~~~~~~~~~~~~~~L~~~l~~~~-----~-----------~v~~~a~~~L~~l~~~~~~~~~~~~~ 325 (417)
... -......++.. +++.++.-+..++ . +.|......+..++.-.+......+-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~~-Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLKS-LLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHH-HHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHHH-HHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 311 01222222222 4444555554321 0 23333332222222222222111000
Q ss_pred cCChHHHHHhhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----CCCHHHHHHHhc-----cCCHHHHHHHHH
Q 014864 326 YQALPCLLNLLS---GNYKKSIKKEACWTVSNITAGNREQIQAVI-E----ANIIGPLVALLE-----NAEFDIKKEAAW 392 (417)
Q Consensus 326 ~~~l~~L~~ll~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~~l~-----~~~~~v~~~a~~ 392 (417)
.-+.+.+...+. +. ++..++.+..+|+.++.+......... . ..+++.|..++. ..++.|+..++|
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 011222333332 23 688899999999999886432111100 0 123455555555 678999999999
Q ss_pred HHHHhhCC
Q 014864 393 AISNATSG 400 (417)
Q Consensus 393 ~L~nl~~~ 400 (417)
+++..+..
T Consensus 518 ~l~rys~~ 525 (980)
T 3ibv_A 518 ILVRYASF 525 (980)
T ss_dssp HHHHTGGG
T ss_pred HHHHHHHH
Confidence 99998766
No 110
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.89 E-value=0.029 Score=46.82 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=102.9
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHH-------hhcCCCC-----hhhHHHHHHHHHHhhcCChHHHHH
Q 014864 256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLA-------EFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQC 322 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~-------~~l~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~ 322 (417)
+++.++.|+.-|+.=-+..++....+-.+ |.+..|+ +.+..+. ..-...|+..+..++++++ -...
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpe-tr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPE-TRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTT-THHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcc-hhhH
Confidence 44456666666655433333333333332 4444432 2233222 1223455666666676544 5555
Q ss_pred HHHcCChHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 014864 323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 397 (417)
Q Consensus 323 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl 397 (417)
++++++.-.|..+|+... .+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.+..-.|.-|.+.+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 888888888888887652 35788899999999986 7889999999999999999999999999999999999888
Q ss_pred hCCCCHHHHHHHH
Q 014864 398 TSGGTHEQIKYEH 410 (417)
Q Consensus 398 ~~~~~~~~~~~l~ 410 (417)
.. +...+.|++
T Consensus 173 L~--dd~GL~YiC 183 (268)
T 2fv2_A 173 LL--DDTGLAYIC 183 (268)
T ss_dssp HH--SHHHHHHHT
T ss_pred hc--cchhHHHHH
Confidence 76 455555554
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.83 E-value=0.032 Score=46.17 Aligned_cols=144 Identities=15% Similarity=0.045 Sum_probs=106.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchHHH
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD 195 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~ 195 (417)
++..-.+.+++. .++|..|+..|+.. .. . ...++.+.. +..+++-.|++.+..+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 566666777777 79999999998887 31 1 134566666 5557889999999999999984 33321
Q ss_pred HHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 196 ~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
.++.+.... .+++..+++.|...+..-+.. + ........++|.|..+..+++.-|+..+.|.|..++..++
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 456666666 889999999999988765543 2 1223335678888888888889999999999999999998
Q ss_pred HHHHHHHH
Q 014864 276 DKIQAVIE 283 (417)
Q Consensus 276 ~~~~~~~~ 283 (417)
+-+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87655544
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.78 E-value=0.029 Score=46.37 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=104.3
Q ss_pred hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHh-hcCCCChhhHHHHHHHHHHhhc-CChHH
Q 014864 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVT-GDDMQ 319 (417)
Q Consensus 242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-~l~~~~~~v~~~a~~~L~~l~~-~~~~~ 319 (417)
...++....+..++..+++..|+..|+.+ .... .+++.+.. +..++++.|+..+..+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 34556666677777789999999999888 3221 14566666 5567789999999999999984 3332
Q ss_pred HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-----CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHH
Q 014864 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-----GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394 (417)
Q Consensus 320 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L 394 (417)
..++.+..++.++ +..+|+.|.-.+.-.+. .+++ -+++.|-.+..+++.-||+...|+|
T Consensus 139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~--------~ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPN--------EAIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHH--------HHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHH--------HHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2567889999999 99999999877543222 2222 2456666677788999999999999
Q ss_pred HHhhCCCCHHHHHHHHhc
Q 014864 395 SNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 395 ~nl~~~~~~~~~~~l~~~ 412 (417)
..++.. +++-+..+++.
T Consensus 203 rD~SK~-~Pd~V~~~~~~ 219 (240)
T 3l9t_A 203 RDISKK-FPDLVKIELKN 219 (240)
T ss_dssp HHHHTT-CHHHHHHHHHT
T ss_pred HHHhhh-CHHHHHHHHHH
Confidence 999887 77877777653
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.75 E-value=0.21 Score=45.86 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH
Q 014864 171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250 (417)
Q Consensus 171 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ 250 (417)
++...+..|+..|.....+-|...+. ++..++.++ .+.|..++..|+..|..+|.+ ..+..+..+|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 57889999999999999888887666 678899999 888999999999999999987 336778889999
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 251 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~ 313 (417)
+|+++++.-...+=++|..+...++.. .+..+...+..+++.+|..++..|..-.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999998776666667776665544321 2333444444457788888888875443
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.47 E-value=0.03 Score=46.67 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=127.4
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHH-H-HHHhCCHHHHHHhh-------cCCC----CHHHHHHHHHHH
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE-E-VIRSGVVPRFVEFL-------LRED----YPQLQFEAAWAL 141 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~-~-~~~~g~i~~Lv~lL-------~~~~----~~~~~~~a~~~L 141 (417)
+..++..|. +++.+..|+..|.+--.. -+... . .-.-|.+..|++-+ +.+. .+.-...|+..|
T Consensus 5 i~qli~~L~--~p~~Re~AL~eLsk~Re~--~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 5 IYQWINELS--SPETRENALLELSKKRES--VPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHTS--STTTHHHHHHHHHHHTTT--CTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CchhHHHHHHHHHHhhhc--cccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 455555555 445689999888875322 23222 2 23556666665422 2211 012234556666
Q ss_pred HHHhCCCchhHHHHHhCCChhHHHHhhCC-----CCHHHHHHHHHHHHHhh-CCCchHHHHHHhcCCHHHHHHHhcCCCc
Q 014864 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPK 215 (417)
Q Consensus 142 ~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 215 (417)
-.++++ ++.+..++++.+.-.|..+|+. +.+-++-.++.++|.+. .++++....+++.++++.+++.+ +..+
T Consensus 81 QcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs 158 (268)
T 2fv2_A 81 QCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS 158 (268)
T ss_dssp HHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred HHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence 777775 8889999998888777778864 23578888999999988 56777888899999999999999 6666
Q ss_pred hhHHHHHHHHHhhhhcCCC--------CCChhhhhchHHHHH-HhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 216 LSMLRNATWTLSNFCRGKP--------QPPFDQVSPALPALA-HLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~~~~--------~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
+-.+..|...+..+..++. ...+..+..++..++ .+...+++.+..++++|...|+++..
T Consensus 159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 6667777777766655431 112222333443333 34456688899999999999987653
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.16 E-value=0.51 Score=43.34 Aligned_cols=245 Identities=13% Similarity=0.033 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHh
Q 014864 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL 210 (417)
Q Consensus 131 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 210 (417)
+..+.-|+..+......-|+... .++..++.++.+.+..||.+|+..|..+|.+ . .... +...|+++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence 78999999999998887777655 5678899999999999999999999999988 3 2222 467889999
Q ss_pred cCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHcCChHH
Q 014864 211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPR 289 (417)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~ 289 (417)
+..++.-...+-++|..+...+| .+.+..+...+.++++.+++.++..|..=... ..+....-.+.-++..
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 67777666777777777776543 34555555555557788888877766542211 0000001111124455
Q ss_pred HHhhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhh------cCCCchhHHHHHHHHHH----HHhc-
Q 014864 290 LAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLL------SGNYKKSIKKEACWTVS----NITA- 357 (417)
Q Consensus 290 L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll------~~~~~~~v~~~a~~~L~----nl~~- 357 (417)
+.+.|.+-...-....+.+|+.+-.... ...+. +++.+.... ... +++.......++. -++.
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~ 255 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN 255 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence 6666655544444445555555433322 22222 233333332 112 3333222222222 2222
Q ss_pred -CCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCC
Q 014864 358 -GNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 358 -~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.+.....++.+ .++|.+-.+-.. ...+.+...+.++.-++..++
T Consensus 256 v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 256 VHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 24455555555 477744322221 122477788888888887765
No 116
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.15 E-value=1 Score=46.74 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=90.6
Q ss_pred HHHHHHhhcC--CChHHHHHHHHHHHHhccCChHH-HHHHHHcCChHHHHhhcCCCC-----hhhHHHHHHHHHHhhcCC
Q 014864 245 LPALAHLIHS--NDDEVLTDACWALSYLSDGTNDK-IQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 245 l~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~L~~~l~~~~-----~~v~~~a~~~L~~l~~~~ 316 (417)
++.+.+.+.. .+....+.+||+++.++..-.+. -..++- .+++.|+.+..++. ..++...++++|....--
T Consensus 479 ~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 479 TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 3444444443 25788999999999997544322 112222 25677776665441 235555678888876432
Q ss_pred hHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHh----ccCCHHHHHH
Q 014864 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL----ENAEFDIKKE 389 (417)
Q Consensus 317 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l----~~~~~~v~~~ 389 (417)
..... ++ ..++..+++.+.++ ++.|+..||.++..++..+....-.... ...++.+++.+ ..-.++-...
T Consensus 558 ~~h~~-~L-~~vl~~L~~~m~~~-~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 558 RAHWK-FL-KTVVNKLFEFMHET-HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHCHH-HH-HHHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HhCHH-HH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22111 11 13466777888877 8999999999999998754432100000 01233333322 2335667777
Q ss_pred HHHHHHHhhCCCCHH
Q 014864 390 AAWAISNATSGGTHE 404 (417)
Q Consensus 390 a~~~L~nl~~~~~~~ 404 (417)
...+++.++.....+
T Consensus 635 lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 635 FYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhCCCc
Confidence 777788877776443
No 117
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.11 E-value=0.33 Score=42.39 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=105.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCC----ChhHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 014864 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR 192 (417)
Q Consensus 118 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g----~i~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~ 192 (417)
+..+..+++.+. +.++-++..++-.+.+ +.....+.+.. ++..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 456666664443 5667777777766653 44444443322 22234444443 456678899999999987766
Q ss_pred HHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcC-CChHHHHHHHHHH
Q 014864 193 CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWAL 267 (417)
Q Consensus 193 ~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l 267 (417)
.++.+.. ....++..+. .+.+..++..++.++.|++... ..........++..+..++.. .|.+....++.+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5666554 2333444332 4567889999999999998753 111223333455555566643 4889999999999
Q ss_pred HHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (417)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (417)
++|...+.+..+....-|+-..+-.....
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998766554444444554544445544
No 118
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.97 E-value=0.28 Score=41.09 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=92.8
Q ss_pred HHhhhcCCC-hHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhC
Q 014864 78 MVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 78 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l~~ 146 (417)
+++.|++.. +..-...+..|+..+...+..-++.+ ..+++..|+.+|.. . .+...+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 445555432 22223345556555554322334456 46667778877753 1 125778899999999987
Q ss_pred CCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hH-HHHHH----------hcCCHHHHHHHhcCC
Q 014864 147 GTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQ 213 (417)
Q Consensus 147 ~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~ 213 (417)
. ......+.. .+.+..+...|.++++.++..++..|+.+|..+. .. ...++ +..-..+++..+..+
T Consensus 84 ~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 N-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp S-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred C-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 5 445555554 5788999999999999999999999998885543 12 22221 222344566666434
Q ss_pred CchhHHHHHHHHHhhhhcCC
Q 014864 214 PKLSMLRNATWTLSNFCRGK 233 (417)
Q Consensus 214 ~~~~~~~~a~~~l~~l~~~~ 233 (417)
.+.+.+..++..+-.+....
T Consensus 163 ~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 45555555555555555543
No 119
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.96 E-value=0.76 Score=40.25 Aligned_cols=319 Identities=14% Similarity=0.142 Sum_probs=175.2
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----CC-------CHHHHHHHHHHHHHHh
Q 014864 77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----ED-------YPQLQFEAAWALTNIA 145 (417)
Q Consensus 77 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~-------~~~~~~~a~~~L~~l~ 145 (417)
.+....+..||.-++.-+..++..+..++-..++..--.|.+..++..+-+ .. ++.+-..-+.+|..+.
T Consensus 10 Air~WFnTpDPqrrfhMA~tiReWvrrDKlaqvDqAnlPnCiq~lLnII~DGlKPQpvQlP~sYYaQLw~~LLDIL~RlT 89 (619)
T 3c2g_A 10 AIRLWFNTPDPMQRLHMAKTIRTWIRQDKFAQVDQANMPNCVQQILNIIYDGLKPQPVQLPISYYAQLWYNLLDILRRFT 89 (619)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHHHHTTTTSCGGGHHHHHHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhhhcccCcccCchHHHHHHHHHhcCCCcccccCChhHHHHHHHHHHHHHHHHh
Confidence 445677789999999999999988765433333332223445555554432 11 1233444455555555
Q ss_pred CCC--chhHHHHHhC------C---ChhHHHHhhCC-----CC-HHHHHHHHHHHHHhhCC--CchHHHHHHhcCCHH--
Q 014864 146 SGT--SEHTKVVIDH------G---AVPIFVKLLYS-----PS-DDVREQAVWALGNIAGD--SPRCRDLVLSQGGLV-- 204 (417)
Q Consensus 146 ~~~--~~~~~~i~~~------g---~i~~L~~ll~~-----~~-~~i~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~-- 204 (417)
... ..+...++.. | .=+.++.+++- ++ .....+....+.|+..+ .+..|..+...--..
T Consensus 90 ~~~it~PyIHqvVQlF~PreNgp~dFRdLICN~iq~~~~~d~hm~~CAkQvF~Ife~ii~~~KneKLR~dFAr~~Kfekl 169 (619)
T 3c2g_A 90 FLPIISPYIHQVVQMFCPRENGPQDFRELICNLISLNWQKDPHMKHCANQVFQIFNCIIMGVKNEKLRTEFAQHLKFEKL 169 (619)
T ss_dssp HCGGGGGGHHHHHHTTSCSSSSTTSHHHHHHHHTCGGGGGSTTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCSHHH
T ss_pred hccccchHHHHHHHHhccCCCCchhHHHHHHHhcCccccCChHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhHHHHH
Confidence 421 1222222211 1 11233333321 11 22345556666776642 333444444332233
Q ss_pred --HHHHHhcCCC-----chhHHHHHHH-----------HHhhhhcCC-CCCCh---hhhhchHHHHHHhhcCCCh-----
Q 014864 205 --PLLAQLNGQP-----KLSMLRNATW-----------TLSNFCRGK-PQPPF---DQVSPALPALAHLIHSNDD----- 257 (417)
Q Consensus 205 --~L~~ll~~~~-----~~~~~~~a~~-----------~l~~l~~~~-~~~~~---~~~~~~l~~L~~ll~~~~~----- 257 (417)
.|+..+...- ++.+..-.-. .+++=-... +.++. ....+++-.--.++.-.|+
T Consensus 170 ~gtL~~yl~pq~~p~~iNPtil~~lRFiISKDt~lKd~~IWn~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~q 249 (619)
T 3c2g_A 170 VGTLSEYFNPQVHPGMINPAIFIIFRFIISKDTRLKDYFIWNNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLPQ 249 (619)
T ss_dssp HHHHHGGGCTTSCGGGCCTHHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGGG
T ss_pred HHHHHHhcCCCCCccccCchhhhhhHhhhcccceeccceeeCCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhcccC
Confidence 3444442222 2222211111 111111111 11111 1223333333344443332
Q ss_pred --H------HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 014864 258 --E------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329 (417)
Q Consensus 258 --~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 329 (417)
+ |...+...| +|.-++.+.+.-+++.+++..+...+..++.++....+..|-..+....-.. .--...+
T Consensus 250 Npel~~LiQVvtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~L 326 (619)
T 3c2g_A 250 NPELAHLIQVIIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENIL 326 (619)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccc
Confidence 2 333344444 4445667778889999999999999999999999999888877653322110 0012567
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC-------CHHHHHHHHHHHHHhh
Q 014864 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWAISNAT 398 (417)
Q Consensus 330 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-------~~~v~~~a~~~L~nl~ 398 (417)
|.++..+.-..+.++.......|+|..++.....+..+..|.++.|...+... +..-++-||..++|..
T Consensus 327 PFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 327 PFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 88888876554889999999999999998777777778899999998887432 3455677777777654
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.84 E-value=0.52 Score=42.68 Aligned_cols=158 Identities=11% Similarity=0.094 Sum_probs=104.0
Q ss_pred HHHHHhhhcCCCh-HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----------CCCHHHHHHHHHHHHH
Q 014864 75 LPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTN 143 (417)
Q Consensus 75 l~~l~~~l~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~~ 143 (417)
-..+++.|.++.. ......+..|+..+...+..-++.++ .+++..|+.+|.. ..+...+..++.||..
T Consensus 68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 3556777766432 22344677777666654233345676 5668888888752 1125788999999999
Q ss_pred HhCCCchhHHHHHh-CCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hH-HHHH----------HhcCCHHHHHHHh
Q 014864 144 IASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLV----------LSQGGLVPLLAQL 210 (417)
Q Consensus 144 l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~----------~~~g~i~~L~~ll 210 (417)
+... ......++. ...+..|...+.++++.++..++..|+-+|.... .. ...+ .+..-...++..+
T Consensus 147 lmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L 225 (383)
T 3eg5_B 147 FMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 225 (383)
T ss_dssp HTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred Hhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9875 444454554 5788999999999999999999999999996543 21 2222 2333466777777
Q ss_pred cCCCchhHHHHHHHHHhhhhcCCC
Q 014864 211 NGQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 211 ~~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
....+.+....++..+-.+....+
T Consensus 226 ~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 226 KSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC
Confidence 444566777766666666666543
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.73 E-value=1.3 Score=46.85 Aligned_cols=300 Identities=9% Similarity=0.054 Sum_probs=168.5
Q ss_pred CHHHHHhhhcCC--ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhCC---
Q 014864 74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG--- 147 (417)
Q Consensus 74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~--- 147 (417)
.+..++..+.++ +...+..|-..|..+-.. ++ ....+...|. .+.++.+|..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 345556555554 667788888888776332 11 2333443332 333489999999999987642
Q ss_pred --CchhHHHHHhCCChhHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-chHHHHHHhcCCHHHHHHHhcCCCchhHHHH
Q 014864 148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221 (417)
Q Consensus 148 --~~~~~~~i~~~g~i~~L~~ll~~---~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~ 221 (417)
+++.+..+.+ .++..+...... ....++...+.++..|+... +. --.+.++.+++++.. ++.....
T Consensus 81 ~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~--~~~~~e~ 152 (1204)
T 3a6p_A 81 GMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ--GETQTEL 152 (1204)
T ss_dssp GSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT--CHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC--CHHHHHH
Confidence 2334443332 445554443221 45889999999999987432 11 012356778887733 4455677
Q ss_pred HHHHHhhhhcCC---CCCChh-------hh----hchHHHHHHhhcC-------------------CChHHHHHHHHHHH
Q 014864 222 ATWTLSNFCRGK---PQPPFD-------QV----SPALPALAHLIHS-------------------NDDEVLTDACWALS 268 (417)
Q Consensus 222 a~~~l~~l~~~~---~~~~~~-------~~----~~~l~~L~~ll~~-------------------~~~~v~~~a~~~l~ 268 (417)
++.+|..++... ...... .+ ..+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 888888887542 111100 01 1333444444432 12346667777777
Q ss_pred HhccCChHHHHHHHHcC--ChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh--HHHHHHHHc---CChHHHHHhhc----
Q 014864 269 YLSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIEY---QALPCLLNLLS---- 337 (417)
Q Consensus 269 ~l~~~~~~~~~~~~~~~--~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~---~~l~~L~~ll~---- 337 (417)
+.....+- ..+.+.. +++.+..++. ++.++..|+.+|..++.... .....++.. ..+..++..+.
T Consensus 233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~ 308 (1204)
T 3a6p_A 233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308 (1204)
T ss_dssp TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 65544332 2233332 6677776665 46789999999999997552 221112211 11234444432
Q ss_pred ---CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 014864 338 ---GNYKKSIKKEACWTVSNITAGNREQIQAVIE-----------ANIIGPLVALLENAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 338 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 400 (417)
+..+.++.+..+..+..+.. ....++. .++++.++.+..+++..+-..++.....+...
T Consensus 309 ~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 309 GGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145677777777777762 1222222 14577788888888878888877666656544
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.50 E-value=0.66 Score=48.23 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=109.9
Q ss_pred ChhHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchHHHHHHhcCCHHHHHHHhc---CCCchhHHHHHHHHHhh
Q 014864 160 AVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSN 228 (417)
Q Consensus 160 ~i~~L~~ll~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~a~~~l~~ 228 (417)
.+..+..++.+ .++.+++.++.+++.++. +.+.|.. ..++.+...+. ...+..-+..++.+|.|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 34556666665 567788888888888752 2222211 12344444331 34467778889999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhc--CCCCh
Q 014864 229 FCRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSP 299 (417)
Q Consensus 229 l~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l--~~~~~ 299 (417)
+... ..++.|.+++.. ....++..|+++|..++...+..++ +.++++. ...++
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS 528 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence 9863 457777777742 1356888999999999877665443 5567777 34568
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 014864 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 358 (417)
++|..|+..|-.. .++ . ..+..+...+..+.+..|.......|.+++..
T Consensus 529 EvRiaA~~~Lm~t--~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 529 ELRIRSCIVFFES--KPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHT--CCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH--CcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 8999998887432 222 2 12556777777765888988888899999874
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.42 E-value=2.3 Score=44.19 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=110.3
Q ss_pred HHHHHHHhcCC---CchhHHHHHHHHHhhh----hcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 014864 203 LVPLLAQLNGQ---PKLSMLRNATWTLSNF----CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275 (417)
Q Consensus 203 i~~L~~ll~~~---~~~~~~~~a~~~l~~l----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 275 (417)
+..+..++... .++.+...++-+++.| |...+......+..+...+...+...+.+-..-++.+|+|+.. +
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h
Confidence 44455555221 2455556566555555 4443444444455666666677777777778889999999853 2
Q ss_pred HHHHHHHHcCChHHHHhhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcC-CCchhHHHH
Q 014864 276 DKIQAVIEAGVFPRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKE 347 (417)
Q Consensus 276 ~~~~~~~~~~~~~~L~~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~ 347 (417)
..++.|.+++.. ....++..|+++|..+....+.... +.++.++.+ ..++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 245666677642 1346888899999999876665443 346666632 238899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCH
Q 014864 348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH 403 (417)
Q Consensus 348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~~L~nl~~~~~~ 403 (417)
|+..|.... -+.. .+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 999886432 1222 34455555554 5788888888888888887654
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.24 E-value=0.5 Score=41.19 Aligned_cols=143 Identities=8% Similarity=0.003 Sum_probs=86.9
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHHHHhccCChHHHHHHHHc--CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014864 245 LPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321 (417)
Q Consensus 245 l~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 321 (417)
+..+...+..+ .+..+--++++++|+........ .+... .+++.+...+.+++..++..+...+-|++........
T Consensus 149 ~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~-~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~ 227 (304)
T 3ebb_A 149 SSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK-LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN 227 (304)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH-HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH-HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence 33444555432 45567778999999987765432 23321 3556666666677888999998888888753211000
Q ss_pred HHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhcc-CCHHHHH
Q 014864 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKK 388 (417)
Q Consensus 322 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~ 388 (417)
.-....++..+..++....+.+....+..+|+++..+.++..+.....|+-..+-.+.+. .+.+|..
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~ 295 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE 295 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence 000112455666667655588999999999999998766554444445555554445544 3444443
No 125
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.07 E-value=0.39 Score=41.99 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=88.9
Q ss_pred HHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-CCChHHHH
Q 014864 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT 261 (417)
Q Consensus 183 L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~ 261 (417)
|.|+..++....+-++..+++..+...+ +.++.++.+..+..|...+.... .........+|.++..+. ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCcceEE
Confidence 4556666666778888999999999999 88899999999999988887642 222334678888888774 56889999
Q ss_pred HHHHHHHHhccCChHHHHHHHHcCChHHHHhhcC
Q 014864 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295 (417)
Q Consensus 262 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (417)
.....|+|...+.....+..+..|.++.|-..+.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 9999999999998888888888999998887764
No 126
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.71 E-value=2 Score=38.90 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=99.6
Q ss_pred HHHHhhhcCCChHH-HHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHH
Q 014864 76 PVMVAGVWSNDSGV-QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNI 144 (417)
Q Consensus 76 ~~l~~~l~s~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l 144 (417)
..+++.|.+..... ....+..|+..+...+..-++.+. .+++..|+.+|.. . .+...+..++.||..+
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 34556665543221 123456666555543223344565 5667777777742 1 1257889999999999
Q ss_pred hCCCchhHHHHH-hCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hH-HHHH----------HhcCCHHHHHHHhc
Q 014864 145 ASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLV----------LSQGGLVPLLAQLN 211 (417)
Q Consensus 145 ~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~----------~~~g~i~~L~~ll~ 211 (417)
... ......+. ..+++..+...|.++++.++..++..|..+|..+. .. ...+ -+..-..+++..+.
T Consensus 86 mN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~ 164 (386)
T 2bnx_A 86 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 164 (386)
T ss_dssp TSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred hCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 875 44444444 45788999999999999999999999988886443 21 2222 13334566777775
Q ss_pred CCCchhHHHHHHHHHhhhhcCCC
Q 014864 212 GQPKLSMLRNATWTLSNFCRGKP 234 (417)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~ 234 (417)
.+.+.+....++..+-.+....+
T Consensus 165 ~~~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 165 SGTSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCS
T ss_pred cCChHHHHHHHHHHHHHHHCCCC
Confidence 56677777777777777776644
No 127
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.37 E-value=2.1 Score=36.23 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (417)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (417)
..+...+..++.++...++.... .+++.++++..+.+ .++|...+..+...+...++... ..++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 68888999999977654233333 34788888877766 89999999999998864443322 456788888
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 014864 168 LYSPSDDVREQAVWALGNI 186 (417)
Q Consensus 168 l~~~~~~i~~~a~~~L~nl 186 (417)
+.+.++.+...++.+.+++
T Consensus 99 l~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9989999999999888776
No 128
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.05 E-value=3.2 Score=37.29 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHh
Q 014864 88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167 (417)
Q Consensus 88 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 167 (417)
..+...+..+..++... ++. .-.++++.++++-.+.+ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888899999876543 332 22567999999988888 89999999999988874444322 356788888
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 014864 168 LYSPSDDVREQAVWALGNI 186 (417)
Q Consensus 168 l~~~~~~i~~~a~~~L~nl 186 (417)
|.+.++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9889999999999888886
No 129
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.70 E-value=1.4 Score=46.57 Aligned_cols=259 Identities=11% Similarity=0.052 Sum_probs=142.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhCCChhHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----Cc
Q 014864 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SP 191 (417)
Q Consensus 119 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll--~~~~~~i~~~a~~~L~nl~~~-----~~ 191 (417)
..+-.+++.+.+...+.+|-..|.++-.. + .+...+...| .+.+..++..|+.+|.|.... ++
T Consensus 15 ~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 15 KAVTVMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 33334444322267888888888776442 2 2333333333 356789999999999987632 23
Q ss_pred hHHHHHHhcCCHHHHHHHhcC--CCchhHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHH
Q 014864 192 RCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268 (417)
Q Consensus 192 ~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 268 (417)
+.+..+. ...+..+...... ..+..++..++.++..++... |. .....++.++.++.+ ++.....++.+|.
T Consensus 85 e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~ 158 (1204)
T 3a6p_A 85 LEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILL 158 (1204)
T ss_dssp HHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 3333322 2233333322111 145778888899999988764 31 234677888888865 4555667777777
Q ss_pred HhccC-------ChHHHHH---HHHc---CChHHHHhhcCC-------------------CChhhHHHHHHHHHHhhcCC
Q 014864 269 YLSDG-------TNDKIQA---VIEA---GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 269 ~l~~~-------~~~~~~~---~~~~---~~~~~L~~~l~~-------------------~~~~v~~~a~~~L~~l~~~~ 316 (417)
.+++. ...+... .+.. .+++.+..++.. .+..+...++.++.+...--
T Consensus 159 ~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi 238 (1204)
T 3a6p_A 159 RLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV 238 (1204)
T ss_dssp HHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc
Confidence 77532 1111111 1111 122333333322 12346667777777666543
Q ss_pred hHHHHHHHHcC--ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHC---CCHHHHHHHh--------cc
Q 014864 317 DMQTQCVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQAVIEA---NIIGPLVALL--------EN 381 (417)
Q Consensus 317 ~~~~~~~~~~~--~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~~l--------~~ 381 (417)
+. ..+.+.. +++.++.++. ++.++..|+.+|..++... ++....++.. ..+..++..+ .+
T Consensus 239 ~~--~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e 313 (1204)
T 3a6p_A 239 SM--SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE 313 (1204)
T ss_dssp CH--HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCH
T ss_pred CH--HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCcc
Confidence 32 2233332 6777777665 5689999999999999732 4433333320 1123444443 22
Q ss_pred CCHHHHHHHHHHHHHhh
Q 014864 382 AEFDIKKEAAWAISNAT 398 (417)
Q Consensus 382 ~~~~v~~~a~~~L~nl~ 398 (417)
.+.++.+..+..+..+.
T Consensus 314 ~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 24667777777777765
No 130
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=93.58 E-value=4 Score=36.81 Aligned_cols=237 Identities=14% Similarity=0.050 Sum_probs=123.4
Q ss_pred hhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhh
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l 229 (417)
......++...+..|+.+++++|+.-|+..-.+|..+-+.-...|..+... +-..+.+.+.....-.-....+.+++.+
T Consensus 120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgsI 198 (403)
T 3fga_B 120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI 198 (403)
T ss_dssp HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 333445555667889999999999999999999998876655555544332 3344555553333333344566666666
Q ss_pred hcCCCCCChh-hhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHH
Q 014864 230 CRGKPQPPFD-QVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307 (417)
Q Consensus 230 ~~~~~~~~~~-~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~ 307 (417)
..+-..+... ...-....|+.+-....- ........|+......++..... ++..|+..=-..+..-...-+.
T Consensus 199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ 273 (403)
T 3fga_B 199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLN 273 (403)
T ss_dssp HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHH
T ss_pred HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHH
Confidence 6654333222 222234455555544432 22223333444333333332221 2222333222233333344445
Q ss_pred HHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHh----
Q 014864 308 TVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL---- 379 (417)
Q Consensus 308 ~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l---- 379 (417)
-+..+...-+ .... -+...+...+...+.+. +..|-+.|.....| + .+-.++. ..++|.+...|
T Consensus 274 Ele~iLe~~~~~~f~-~i~~~lf~~la~ci~S~-hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 274 ELEEILDVIEPSEFV-KIMEPLFRQLAKCVSSP-HFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp HHHHHHTTCCHHHHH-HHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHH-HHHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555554333 2222 22224566777778888 88888777654321 1 2222221 12344444444
Q ss_pred ccC-CHHHHHHHHHHHHHhhCC
Q 014864 380 ENA-EFDIKKEAAWAISNATSG 400 (417)
Q Consensus 380 ~~~-~~~v~~~a~~~L~nl~~~ 400 (417)
... +..++..+..++.-+..-
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHHHHh
Confidence 333 678888888888776543
No 131
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.55 E-value=2.8 Score=34.89 Aligned_cols=166 Identities=11% Similarity=0.143 Sum_probs=98.1
Q ss_pred CchhHHHHHhCCChhHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCch
Q 014864 148 TSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216 (417)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 216 (417)
+..+.+.+ ..+++..|+.+|.. .+......++.||..+.....+....+...+.+..+...+ .++++
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~ 110 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVP 110 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCc
Confidence 34555666 35677777776642 1456788899999998877665555555556677777777 78888
Q ss_pred hHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCC
Q 014864 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296 (417)
Q Consensus 217 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (417)
.++..++..|..+|..+... |..+.++..+. +... .-+..-+..++..+..
T Consensus 111 ~~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~---------------~~~~--------~~e~~RF~~lv~~l~~ 161 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERAE--------MDEVERFQPLLDGLKS 161 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSS------CHHHHHHHHHH---------------HHHH--------HHTSCTTHHHHHTTST
T ss_pred hHHHHHHHHHHHHHhCCCCC------ChHHHHHHHHH---------------HHHH--------hCCcchHHHHHHHHhc
Confidence 99999999999998874310 10222222221 1100 0112234556666664
Q ss_pred -CChhhHHHHHHHHHHhhcCChH------HHHHHHHcCChHHHHHhhcCCCchhHH
Q 014864 297 -PSPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIK 345 (417)
Q Consensus 297 -~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~ll~~~~~~~v~ 345 (417)
.+.+.+..++..+..+..+.++ .+..+...|+.+.+-.+=... ++.+.
T Consensus 162 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~ 216 (233)
T 2f31_A 162 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK 216 (233)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHH
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHH
Confidence 4566777777777777766542 223344556666555444333 44443
No 132
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=93.53 E-value=1 Score=38.76 Aligned_cols=137 Identities=11% Similarity=0.071 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHH-HcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc--CChHHH
Q 014864 256 DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QALPCL 332 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L 332 (417)
|.+-...++..|..++..-....+.+- +...+..|+ +.....+.++..|.++|+...++++.....+.+. .++..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 455677888888888765444444333 333444454 3344567899999999999999999988877753 444444
Q ss_pred HHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccC--CHHHHHHHHHHHHHhh
Q 014864 333 LNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNAT 398 (417)
Q Consensus 333 ~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~~L~nl~ 398 (417)
+.-|.. . ....+.+.-+.+|.-+...+.. + ....+..|.+++... ++.++..++..+..+.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 444332 1 1346677777788877765421 1 134567777877766 8899999988888877
No 133
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.32 E-value=1.9 Score=39.00 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=79.3
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q 014864 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ-TQCVI--------- 324 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~--------- 324 (417)
+......++.||..+.....+....+-....+..|+..+.+..+.++..++..|+.+|..+. .. ...++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 45777888899988886665554444445778999999999999999999999999987653 21 22232
Q ss_pred -HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHH----HHHHHHCCCHHHHHHH
Q 014864 325 -EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQ----IQAVIEANIIGPLVAL 378 (417)
Q Consensus 325 -~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~----~~~l~~~~~i~~L~~~ 378 (417)
+..-+..++..+.+..+.+.+..+...+-.+..+. .+. +..+...|+.+.+-.+
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 23446778888876535555544444444444432 222 2334467776666553
No 134
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=92.48 E-value=0.11 Score=29.24 Aligned_cols=38 Identities=32% Similarity=0.571 Sum_probs=27.5
Q ss_pred HhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhh
Q 014864 11 SRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRR 50 (417)
Q Consensus 11 ~~~~~~k~-~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~ 50 (417)
+|...||+ +...++..++| + ..+..|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence 57889999 45555555444 4 678889999998887773
No 135
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.55 E-value=6.5 Score=35.53 Aligned_cols=131 Identities=12% Similarity=0.095 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q 014864 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ-TQCVI--------- 324 (417)
Q Consensus 256 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~--------- 324 (417)
+......++.||..+.....+....+-..+.+..+...|.++++.++..++..|+.+|..+. .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 45677888899998886666555445555788999999999999999999999998887554 11 22222
Q ss_pred -HcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH--HH----HHHHHHCCCHHHHHHHhccCCHHH
Q 014864 325 -EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR--EQ----IQAVIEANIIGPLVALLENAEFDI 386 (417)
Q Consensus 325 -~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~--~~----~~~l~~~~~i~~L~~~l~~~~~~v 386 (417)
+..-+..++..+....+.+.+..+...+-.+..+.+ +. +..+...|+.+.+-.+-...++++
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 223455677777755355555554444444444332 22 233445677666544433344443
No 136
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=90.32 E-value=11 Score=34.65 Aligned_cols=241 Identities=14% Similarity=0.046 Sum_probs=129.9
Q ss_pred chhHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
+......++...+..|+.+++++|+.-++..-.+|..+-+.-...|..+... +-..+.+.+.......-....+.+++.
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3334555566778889999999999999999999988876555455554432 344556666444444445567777777
Q ss_pred hhcCCCCCChh-hhhchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHH
Q 014864 229 FCRGKPQPPFD-QVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306 (417)
Q Consensus 229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~ 306 (417)
+..+-..+... ...-....|+.+.....- ........|+......++..... ++..|+..=-..+..-...-+
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHH
Confidence 77765333222 222334455666554432 22223334444333333322221 222233332223333334445
Q ss_pred HHHHHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCCHHHHHHHhc--
Q 014864 307 RTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLE-- 380 (417)
Q Consensus 307 ~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~~l~-- 380 (417)
.-|..+....+ ..... +...+...+...+.+. +..|-+.|+....| +. +..++. ..++|.++..|.
T Consensus 306 ~eleeile~~~~~ef~~-i~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 306 NELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHH
Confidence 55555654333 22222 2234566777888887 88888877654322 21 112221 124566666552
Q ss_pred --cC-CHHHHHHHHHHHHHhhCCCCHH
Q 014864 381 --NA-EFDIKKEAAWAISNATSGGTHE 404 (417)
Q Consensus 381 --~~-~~~v~~~a~~~L~nl~~~~~~~ 404 (417)
.. +..++..|..++.-+..- +++
T Consensus 378 s~~HWn~~V~~la~~vlk~l~e~-d~~ 403 (449)
T 2npp_B 378 SKTHWNKTIHGLIYNALKLFMEM-NQK 403 (449)
T ss_dssp TTCCSSTTHHHHHHHHHHHHHTT-CHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHH-CHH
Confidence 22 567888888888766554 443
No 137
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=89.17 E-value=7.8 Score=35.59 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=115.8
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-----c
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S 149 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-----~ 149 (417)
+..|++.+.|+|+..+...-..|..+-... .....++...+-..+.+++-......--.+.+.+++.+..|- .
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 556777778888877777766676664432 222223333334455555543321233456777777777763 2
Q ss_pred hhHHHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
+++..+ ...|+.+.+...- .-..+-..++..+...++..... ++..|++.- ..++..-....+.-+..
T Consensus 242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 222222 2233334433221 12234455555555555543332 233444443 33333333333344444
Q ss_pred hhcCCCCCChh-hhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhcC-----CCCh
Q 014864 229 FCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLM-----HPSP 299 (417)
Q Consensus 229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l~-----~~~~ 299 (417)
+...-+...+. ....++..+..++.+++-.|.+.|+.... ++.... ++.. .++|.+...|. |-+.
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~-li~~n~~~IlPii~p~L~~~s~~HWn~ 384 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMS-LISDNAAKILPIMFPSLYRNSKTHWNK 384 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHH-HHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHH-HHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence 44432222222 23566777888889999898888764332 221121 2221 24565555542 3367
Q ss_pred hhHHHHHHHHHHhhcCChHH
Q 014864 300 SVLIPALRTVGNIVTGDDMQ 319 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~~~ 319 (417)
.++..+..++..+...++..
T Consensus 385 ~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 385 TIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp THHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHCHHH
Confidence 78888988888777666644
No 138
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=88.83 E-value=4.8 Score=36.33 Aligned_cols=224 Identities=13% Similarity=0.089 Sum_probs=104.0
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC-----c
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S 149 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-----~ 149 (417)
+..|+..+.|+|+..+...-..|..+-.. -.....++...+-..+.+++-......-..+.+.+++.+..|- .
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 44566666677776666665555554322 1222223333333444444433221122334555666655543 1
Q ss_pred hhHHHHHhCCChhHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhh
Q 014864 150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228 (417)
Q Consensus 150 ~~~~~i~~~g~i~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~ 228 (417)
+.+..+. ..|+.+.+.+.- .-..+...++..+...++..... ++..|++.- ..++..-...-+.-+..
T Consensus 209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence 2222211 222223333221 12234555565565555543332 233344433 33333333333344444
Q ss_pred hhcCCCCCCh-hhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHhhc-----CCCCh
Q 014864 229 FCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----MHPSP 299 (417)
Q Consensus 229 l~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~~l-----~~~~~ 299 (417)
+...-+...+ ......+..+..++.+++-.|.+.|+... +++.... ++.. .++|.+...| .|-+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w-----nNe~i~~-li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMS-LISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHH-HHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh-----ccHHHHH-HHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 4443222222 22245667777888888888888776433 1222111 2221 2344443333 24477
Q ss_pred hhHHHHHHHHHHhhcCCh
Q 014864 300 SVLIPALRTVGNIVTGDD 317 (417)
Q Consensus 300 ~v~~~a~~~L~~l~~~~~ 317 (417)
.++..+..++..+...++
T Consensus 352 ~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCH
Confidence 888888888877765443
No 139
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=84.94 E-value=38 Score=34.87 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=67.4
Q ss_pred ChHHHHhhcCCCCh-hhHHH-HHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh-----
Q 014864 286 VFPRLAEFLMHPSP-SVLIP-ALRTVGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT----- 356 (417)
Q Consensus 286 ~~~~L~~~l~~~~~-~v~~~-a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~----- 356 (417)
++|.++.+....+. ++... |..++..++...- +.... ++..+....+++.+. .|..++..+..+.
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f 834 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELL 834 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHH
Confidence 67777666665554 55555 5556666654332 22222 334444445522266 7777655544333
Q ss_pred cCCHHHHHHHHHCCCHHHHHHHhccCC-HHHHHHHHHHHHHhhCCC-CHHHHHHHH
Q 014864 357 AGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG-THEQIKYEH 410 (417)
Q Consensus 357 ~~~~~~~~~l~~~~~i~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~-~~~~~~~l~ 410 (417)
.-++++.. .+...++.+|.+.. .+||..|..+|+-+..+. .......++
T Consensus 835 ~l~~~~~~-----~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li 885 (997)
T 1vsy_5 835 QLTEEEKN-----KILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLI 885 (997)
T ss_dssp TSCTTHHH-----HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HcCHHHHH-----HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 22233332 45678888999999 999999999999998776 534333333
No 140
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=83.46 E-value=13 Score=33.32 Aligned_cols=192 Identities=14% Similarity=0.046 Sum_probs=100.0
Q ss_pred HHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 152 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
....++...+..|+.+++++|+.-|+....+|..+-+.-...|..+... +-..+.+.+.......-...++++++.+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 3444555678889999999999999999999988876555555554332 445566776444444455667777777777
Q ss_pred CCCCCChhhh-hchHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHH
Q 014864 232 GKPQPPFDQV-SPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309 (417)
Q Consensus 232 ~~~~~~~~~~-~~~l~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L 309 (417)
+-..+..... .-....|+.+.....- ........|+......++..... ++..|+..=-..+..-...-+.-|
T Consensus 246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el 320 (392)
T 2jak_A 246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence 6533322222 2234455565554421 12222333333333333322221 222232222222222233334444
Q ss_pred HHhhcCCh-HHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHH
Q 014864 310 GNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351 (417)
Q Consensus 310 ~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 351 (417)
..+....+ .... -+...+...+...+.+. +..|-+.|...
T Consensus 321 eeiLe~~~~~~f~-~i~~~lF~~la~ci~S~-hfqVAErAL~~ 361 (392)
T 2jak_A 321 EEILDVIEPSEFV-KIMEPLFRQLAKCVSSP-HFQVAERALYY 361 (392)
T ss_dssp HHHHHTCCHHHHH-HHHHHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred HHHHHhCCHHHHH-HHHHHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 44443332 2222 12234556667777776 77777766543
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.11 E-value=1.7 Score=33.90 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=53.2
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 146 (417)
+++..+.+.|++.++.++..|+..|-.++.........++....++..|+.+++...++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45677777888888999999988888887664344444566677788888888753447888887776666554
No 142
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=82.35 E-value=11 Score=32.48 Aligned_cols=147 Identities=10% Similarity=-0.016 Sum_probs=89.8
Q ss_pred HHHHHhhhcCC------ChHHHHHHHHHHHHhhhCCCCCcHHHHHH--hCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864 75 LPVMVAGVWSN------DSGVQYECTTQFRKLLSIERSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 75 l~~l~~~l~s~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 146 (417)
+..+...++++ |......|+..|..+.-. -..--.++. ...+..|+ +..... +.++..|+++++....
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD--i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssLR 99 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD--YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS--HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh--HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHHc
Confidence 45555566665 455566777777776421 233333443 23333444 334444 7899999999999999
Q ss_pred CCchhHHHHHhC--CChhHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC--c
Q 014864 147 GTSEHTKVVIDH--GAVPIFVKLLYS-------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--K 215 (417)
Q Consensus 147 ~~~~~~~~i~~~--g~i~~L~~ll~~-------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~ 215 (417)
.+|.....+.+. ..+..++.-|.. ....+...-+.+|--|..++..+. ..++..|.+++. .. +
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~-~~~~d 173 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYE-RNNKD 173 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHH-HTTTC
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHc-cCCCC
Confidence 999998887764 344444433321 234566666777777776654332 346677777773 34 7
Q ss_pred hhHHHHHHHHHhhhhc
Q 014864 216 LSMLRNATWTLSNFCR 231 (417)
Q Consensus 216 ~~~~~~a~~~l~~l~~ 231 (417)
+.++..++..+..+..
T Consensus 174 ~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 174 KQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 7788887777776664
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.95 E-value=1.3 Score=33.47 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=47.9
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~ 145 (417)
+.+..+.+.|.+.++..+..|+..+..++.....+...++....++..|+.+++..+ +.++..++..+...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHH
Confidence 456667777777788888888877777765543333334555566777777776555 778777777666554
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.75 E-value=2.3 Score=32.54 Aligned_cols=74 Identities=8% Similarity=-0.045 Sum_probs=56.7
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~ 146 (417)
+++..+.+.|++.++.++..|+..|-.++.....+...++....++..|+.+++.. .++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999998888765444556677788899999988741 237888888877776654
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=80.49 E-value=2.8 Score=32.06 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=55.9
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~ 146 (417)
+.+..+.+.|++.++.++..|+..|-.++.....+...++....++..|+.+++.. .++.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999888887765444455677777888899988742 237888888887777664
No 146
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=80.19 E-value=24 Score=31.63 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=76.6
Q ss_pred CChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHh--------
Q 014864 285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT-------- 356 (417)
Q Consensus 285 ~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~-------- 356 (417)
.+++.++.+-.+.+..++...+..|...+....+... .+++.|..++.+. ++.|.+.+..+.+++-
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999888999999999999988865544432 4577888889877 8899988888777763
Q ss_pred cC--CHHHHHHHHH--CCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 357 AG--NREQIQAVIE--ANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 357 ~~--~~~~~~~l~~--~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
.+ .++.....++ ..+-..++..+.+++..+|..|+..+..++
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 11 1111111221 123445666777888999999998888766
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.03 E-value=6.1 Score=30.67 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=55.6
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
++..|.+-|.+.++.++..|+.+|-.+..+ +..+...+....++..|++++....++.++..++..+..-...
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 455666777888899999999888887754 4557777777778888999886556788888888777665543
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.81 E-value=2 Score=35.63 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=50.8
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 146 (417)
+++..+.+.|++.++.++..|+..|..++..-..+...++....++..|+.+++...++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888776654333444555666677777777654446777777776666553
No 149
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=75.30 E-value=3.3 Score=32.48 Aligned_cols=74 Identities=7% Similarity=-0.039 Sum_probs=54.0
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~~l~~ 146 (417)
+.+..+.+.|++.++.++..|+..|-.++.........++....++..|+.+++. ..++.++..++..+...+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567777888888999999999888888765433444566677788888888863 1237888888877776654
No 150
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.08 E-value=8.2 Score=39.72 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=110.0
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC---CCchhHHHHHHHHHh--hhhcCCC
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLS--NFCRGKP 234 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~~~~~~a~~~l~--~l~~~~~ 234 (417)
.+.-|+.+-.+..++|+..|-.+|......-+..+.. +++.+++.|.. +.+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 3556777778889999999999999988766666655 46677777754 456666677777665 12111 1
Q ss_pred CCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHhccC--------------------C----hHHHH-----------
Q 014864 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--------------------T----NDKIQ----------- 279 (417)
Q Consensus 235 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~--------------------~----~~~~~----------- 279 (417)
.........+++.|++....+.+.++..+-.+...+... + ...+.
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 234455567777777776666655544333222222110 0 00000
Q ss_pred HHHH--cCChHHHHhhc-CCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHH
Q 014864 280 AVIE--AGVFPRLAEFL-MHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354 (417)
Q Consensus 280 ~~~~--~~~~~~L~~~l-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~n 354 (417)
...+ .++...++... .... +.....+++.+.++....+.. ....++..+++.+.++ ++.+|..|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~----~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK----PDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC----CCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 0000 12333444554 2335 777777777765665433211 1123456788888888 99999999988877
Q ss_pred Hhc
Q 014864 355 ITA 357 (417)
Q Consensus 355 l~~ 357 (417)
+..
T Consensus 363 il~ 365 (997)
T 1vsy_5 363 TCN 365 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.94 E-value=8.3 Score=31.83 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=56.6
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhcC
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~ 232 (417)
++..|.+-|.+.++.++..|+.+|-.+..+ +..+...+....++..|.+++....++.++..++..+...+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 566777788889999999999988888754 3346677777777888888886667888888888887777654
No 152
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=70.55 E-value=40 Score=27.48 Aligned_cols=134 Identities=7% Similarity=-0.056 Sum_probs=76.9
Q ss_pred CCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcC-CChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 014864 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290 (417)
Q Consensus 212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 290 (417)
.++.-+.+..++..+....... ....++.+-.++.+ ++-.+....|.+++.+....++ .+.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~--------~~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------ELPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------GHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH--------HHHHHH
Confidence 4455556666666665543211 11233334444443 4556655555555554432222 134567
Q ss_pred HhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE 368 (417)
Q Consensus 291 ~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (417)
.....+++.-++..|+-.+ +..........+ ++.+-..+.++ +.-|++...|+|..+...+++....+++
T Consensus 130 ~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~~-----~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQ--LMLKEKTNQDLL-----KKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTT--TTCGGGCCHHHH-----HHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH--HHHHHCCCHHHH-----HHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 8888999887777776544 222111122211 44444467777 8999999999999999988886655553
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.06 E-value=3.1 Score=34.26 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=49.2
Q ss_pred cCHHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 014864 73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIA 145 (417)
Q Consensus 73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~ 145 (417)
+.+..+.+.|++.++.++..|+..|..++..-..+...++....++..|+.++++..++.++..++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888877765323333455556677777777764434677777666555544
No 154
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=69.09 E-value=1.4 Score=38.45 Aligned_cols=51 Identities=27% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCCCCC--CchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhhcc
Q 014864 2 SLRPNS--KADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL 53 (417)
Q Consensus 2 ~~~~~~--~~~~~~~~~k~~~~~~~~~~~r~~~~~~lrk~~r~~~l~~~r~~~~ 53 (417)
|+..++ .+.+|...||+.....+.. +|++...+..|++|.+.....|+...
T Consensus 20 s~~~ns~~a~HPR~sqyK~k~~~~~Q~-~RR~~~Le~QK~kR~d~~~haR~La~ 72 (365)
T 3gjx_B 20 SQDLNSTAAPHPRLSQYKSKYSSLEQS-ERRRRLLELQKSKRLDYVNHARRLAE 72 (365)
T ss_dssp SCCTTCTTSCCGGGCC---CTTCCSCC-HHHHHHHHHTCCCCSCHHHHHHHHHH
T ss_pred ccCCCcccCCCcchhhcccccchhhHH-HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444444 6678999999843333333 33345667788899999999998643
No 155
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=67.64 E-value=49 Score=26.94 Aligned_cols=139 Identities=8% Similarity=-0.005 Sum_probs=86.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHhhcC-CCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014864 246 PALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCV 323 (417)
Q Consensus 246 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 323 (417)
..+..+..++.-+.+.-++..+...... .++. ++.+-.++. -+++.+....+.+++.++...+..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 3445556666666677777677665422 2221 222333343 346777776667788887555433
Q ss_pred HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
..+.+..+..++ +.-+|+.|+-++..... ++++. +++.+-..+.+++.-|++...|+|..+... +
T Consensus 125 ----~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~ 190 (220)
T 2b6c_A 125 ----LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-N 190 (220)
T ss_dssp ----HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-C
Confidence 235688899998 88888888765432222 33322 234444467788999999999999999887 6
Q ss_pred HHHHHHHHh
Q 014864 403 HEQIKYEHT 411 (417)
Q Consensus 403 ~~~~~~l~~ 411 (417)
++....++.
T Consensus 191 ~~~v~~fl~ 199 (220)
T 2b6c_A 191 PQWVEELMK 199 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665555553
No 156
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.51 E-value=26 Score=26.57 Aligned_cols=73 Identities=18% Similarity=0.075 Sum_probs=55.5
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchHHHHHHhcCCHHHHHHHhcC-----CCchhHHHHHHHHHhhhhcC
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRG 232 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~a~~~l~~l~~~ 232 (417)
++..|.+-+.+.++.++..|+.+|-.+.. .++.+...+....++..|++++.. ..++.++..++..+..-+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 56677778888999999999998888874 344577778788888999999853 24677888888777766654
No 157
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=67.24 E-value=12 Score=28.07 Aligned_cols=70 Identities=7% Similarity=0.053 Sum_probs=52.7
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 014864 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398 (417)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~ 398 (417)
++..|.+-|.+. ++.++..|...|-.+..++... ...+.+..++..|+.++...++.|+..++..+...+
T Consensus 43 a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 356678888888 8999999888887777644333 334445667888888888788999999988887765
No 158
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=67.15 E-value=9.3 Score=34.34 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=34.4
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC
Q 014864 75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (417)
Q Consensus 75 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~ 148 (417)
+..|++.+.|+|+..+..--..+..+-.. -.....++...+-..+.+++-......--.+.+++++.+..|-
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 34556666666666666555555544322 1222333333334445555543332222345556666665553
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=66.60 E-value=24 Score=29.54 Aligned_cols=133 Identities=10% Similarity=-0.004 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhCCChhHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC
Q 014864 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (417)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~ 212 (417)
++-++..++-++.+.+.. +.+..++. .+.+.++..+-.++++++|+..+....+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 444666666555543211 23333322 3335567889999999999998877445555443234445554422
Q ss_pred C-------CchhHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhc-----CCChHHHHHHHHHHHHhccC
Q 014864 213 Q-------PKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALSYLSDG 273 (417)
Q Consensus 213 ~-------~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~ 273 (417)
. .+..++..++..+.|++-.. ...........+..+...+. ..|++....++-+++++...
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 1 25667888888888888642 11112222223333333221 13778888888899888743
No 160
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=65.05 E-value=57 Score=26.79 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=80.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcc-CChHHHHHHHHcCChHHHHhhcC-CCChhhHHHH-HHHHHHhhcCChHHHHHH
Q 014864 247 ALAHLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPA-LRTVGNIVTGDDMQTQCV 323 (417)
Q Consensus 247 ~L~~ll~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~L~~~l~-~~~~~v~~~a-~~~L~~l~~~~~~~~~~~ 323 (417)
.+..+..++..+.+.-++..+..... ..++ .++.+-.++. -+++.+.... ..++|.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 44455566666666666655543321 1111 1222223332 3456655543 3556666544432
Q ss_pred HHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
...+.+..++.++ +.-+++.|+-.+..... .+++. .++.+...+.+++.-|++...|+|..+... +
T Consensus 131 ---~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~~--------~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~ 197 (232)
T 3jxy_A 131 ---LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEEL--------LFWIIGQLHSSKEFFIQKAIGWVLREYAKT-N 197 (232)
T ss_dssp ---GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ---HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-C
Confidence 1346688889888 88888888755422221 23321 234455667888999999999999999887 6
Q ss_pred HHHHHHHHhc
Q 014864 403 HEQIKYEHTF 412 (417)
Q Consensus 403 ~~~~~~l~~~ 412 (417)
++.+..+++.
T Consensus 198 p~~v~~fl~~ 207 (232)
T 3jxy_A 198 PDVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6766666654
No 161
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=62.80 E-value=70 Score=29.06 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhCCChhHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC
Q 014864 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (417)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~ 212 (417)
++-++.+|+-++.+.+.. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 566777777777653321 2333333 33445678889999999999998776444444332234566665532
Q ss_pred C-------CchhHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhc---------CCChHHHHHHHHHHHHhccCC
Q 014864 213 Q-------PKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 213 ~-------~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~---------~~~~~v~~~a~~~l~~l~~~~ 274 (417)
. .+..++..++..+.|++... .... ...++.+..++. ..|++....++-+|++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 24567888888888888642 1111 223344444443 258889999999999998544
Q ss_pred h
Q 014864 275 N 275 (417)
Q Consensus 275 ~ 275 (417)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 162
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.54 E-value=41 Score=26.15 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=64.8
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH-HHHHCCCHHH
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ-AVIEANIIGP 374 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~-~l~~~~~i~~ 374 (417)
.+|+......|..+..= +.... .++..|.+-+++. ++.++..|..+|-.+..++..... .+.+..++..
T Consensus 28 ~~Dw~~ileicD~I~~~----~~~~k-----~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKE----LEGPQ-----IAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SCCHHHHHHHHHHHHHS----TTHHH-----HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CcCHHHHHHHHHHHHcC----CccHH-----HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 44565555555555442 11112 2356688888888 999999999999999886655444 4446678899
Q ss_pred HHHHhcc------CCHHHHHHHHHHHHHhhC
Q 014864 375 LVALLEN------AEFDIKKEAAWAISNATS 399 (417)
Q Consensus 375 L~~~l~~------~~~~v~~~a~~~L~nl~~ 399 (417)
|+.++.. .+..|+..++..+..-+.
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999863 367999998888877553
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.53 E-value=13 Score=30.48 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=54.5
Q ss_pred ChhHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHHHhhhhc
Q 014864 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 160 ~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~ 231 (417)
++..|.+-|.+.++.++..|+.+|-.+..+. +.+...+....++..|..++....+..++..++..+..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4556677778899999999999998888654 44777777777888888888666677888877766665554
No 164
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.09 E-value=18 Score=27.48 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=56.5
Q ss_pred hchHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHH-HHHHHcCChHHHHhhcCC------CChhhHHHHHHHHHHhhc
Q 014864 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 242 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~L~~~l~~------~~~~v~~~a~~~L~~l~~ 314 (417)
..++..|.+-|.+.++.++..|+..|-.+..+..... ..+.+..++..|+.++.. .++.|+..++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667788888899999999999999998887765544 445556788889988864 367888888888876653
No 165
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=58.25 E-value=82 Score=26.38 Aligned_cols=107 Identities=10% Similarity=0.197 Sum_probs=70.9
Q ss_pred CHHHHHHHhcCCCchhHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh--------ccC
Q 014864 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL--------SDG 273 (417)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l--------~~~ 273 (417)
+++.++.+. .+.+.++++..+.++...|..+ ......+++.|..++.++|+.+...++.+..++ +..
T Consensus 54 ~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~ 128 (257)
T 3gs3_A 54 FLESVLSLA-HDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSL 128 (257)
T ss_dssp HHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhc-cCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666655 5577889999999888888553 245567788888888888888887776665543 333
Q ss_pred Ch--HHHHHHHH--cCChHHHHhhcCCCChhhHHHHHHHHHHhh
Q 014864 274 TN--DKIQAVIE--AGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313 (417)
Q Consensus 274 ~~--~~~~~~~~--~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~ 313 (417)
+. +..+..-+ ..+-..++..+.+.+..++..|+..+..+.
T Consensus 129 ~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 129 MEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 22 10111111 123456677778888889999888887754
No 166
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.89 E-value=16 Score=28.07 Aligned_cols=74 Identities=9% Similarity=-0.035 Sum_probs=47.6
Q ss_pred cCHHHHHhhhc-CCChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHH-HHHhhcCC--CCHHHHHHHHHHHHHHhC
Q 014864 73 ENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR-FVEFLLRE--DYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 73 ~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~-Lv~lL~~~--~~~~~~~~a~~~L~~l~~ 146 (417)
+++..+.+.|+ +.++.++..|+..|-.++.........++.+..++.. |+.++... ....++..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 45667777776 4778888888888887776543444445666667776 67777431 124677777766665543
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=56.55 E-value=22 Score=32.25 Aligned_cols=102 Identities=7% Similarity=0.051 Sum_probs=65.2
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQAVIE 368 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (417)
+..+..+..+++++.|+.....-..+.+........++..+... .+..++..++..+-|++....... .+
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SC
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---ch
Confidence 44677888999999999877653333232222344555554321 146788899999999986311100 01
Q ss_pred CCCHHHHHHHhc---------cCCHHHHHHHHHHHHHhhCC
Q 014864 369 ANIIGPLVALLE---------NAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 369 ~~~i~~L~~~l~---------~~~~~v~~~a~~~L~nl~~~ 400 (417)
..+...+.+++. ..+.+....++-||++|+..
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 234556666665 25889999999999999964
No 168
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.34 E-value=13 Score=31.24 Aligned_cols=102 Identities=7% Similarity=0.050 Sum_probs=62.4
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQAVIE 368 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (417)
+..+..+.-+++++.|+.....-..+.+........++..+.+. .+..++..++..+-|++....... .+
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~---~~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC---SC
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc---ch
Confidence 44667888999999999987763333233222233344433211 156788899999999986211000 01
Q ss_pred CCCHHHHHHHhcc---------CCHHHHHHHHHHHHHhhCC
Q 014864 369 ANIIGPLVALLEN---------AEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 369 ~~~i~~L~~~l~~---------~~~~v~~~a~~~L~nl~~~ 400 (417)
......+++++.. .+.+....++-+|++++..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 2234455555542 3778999999999999853
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=54.88 E-value=25 Score=31.24 Aligned_cols=131 Identities=12% Similarity=0.030 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHhCCChhHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC
Q 014864 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212 (417)
Q Consensus 134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~ 212 (417)
++-++..|+-++.+.+.. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 566777877777653321 2333333 23345678889999999999988776344444322123344554421
Q ss_pred C-------CchhHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhc---------CCChHHHHHHHHHHHHhccCC
Q 014864 213 Q-------PKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWALSYLSDGT 274 (417)
Q Consensus 213 ~-------~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~L~~ll~---------~~~~~v~~~a~~~l~~l~~~~ 274 (417)
. .+..++..++..+.|++... .... ...++.+..++. ..|++....++-+|++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 24567888888888888642 1111 223344555444 358889999999999998544
Q ss_pred h
Q 014864 275 N 275 (417)
Q Consensus 275 ~ 275 (417)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=54.81 E-value=27 Score=26.17 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=35.8
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 371 ~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
+++.|.+-|.+..+.++..|+.+|..|+..|+...+..+.++
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~ 91 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN 91 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh
Confidence 567888888888999999999999999999988877766554
No 171
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=52.54 E-value=22 Score=31.62 Aligned_cols=102 Identities=7% Similarity=0.051 Sum_probs=63.7
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014864 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-------YKKSIKKEACWTVSNITAGNREQIQAVIE 368 (417)
Q Consensus 296 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 368 (417)
+..+..+..+++++.|+.....-..+.+........+++.+... .+..++..++..+-|++....... .+
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SC
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---ch
Confidence 44677888999999999877653333222211223344433211 156788899999999986311100 01
Q ss_pred CCCHHHHHHHhc---------cCCHHHHHHHHHHHHHhhCC
Q 014864 369 ANIIGPLVALLE---------NAEFDIKKEAAWAISNATSG 400 (417)
Q Consensus 369 ~~~i~~L~~~l~---------~~~~~v~~~a~~~L~nl~~~ 400 (417)
..+...+.+++. ..+.+....++-||++++..
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 234556666665 35889999999999999964
No 172
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=44.38 E-value=71 Score=25.46 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=64.6
Q ss_pred CChhHHHHhhCC------CCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCC--chhHHHHHHHHHhhhh
Q 014864 159 GAVPIFVKLLYS------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFC 230 (417)
Q Consensus 159 g~i~~L~~ll~~------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~~a~~~l~~l~ 230 (417)
..+|.++.++.+ .+.......+.....+..+..-+-+.-+.+ .+++++.++-... ...++..|+..+..+|
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~-LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ-ILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH-HHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 356666665532 355555566666666654432111111111 4666776663222 2279999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCC--ChHHHHHHHHHHHHhc
Q 014864 231 RGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLS 271 (417)
Q Consensus 231 ~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~l~ 271 (417)
.............+...+.+.+.++ +.....-|+..|..+.
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 8754433344456667777766554 3455556677777664
No 173
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=42.21 E-value=41 Score=27.63 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=51.4
Q ss_pred ChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 014864 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA 365 (417)
Q Consensus 286 ~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 365 (417)
..+.+...+.+++.-++..|+..+ +......... ..++.+...+.++ +.-|++...|+|..+...+++....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 456778888888887777776544 2221111111 1234455667777 8999999999999999988987766
Q ss_pred HHHC
Q 014864 366 VIEA 369 (417)
Q Consensus 366 l~~~ 369 (417)
+++.
T Consensus 204 fl~~ 207 (232)
T 3jxy_A 204 YVQN 207 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 174
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=41.96 E-value=48 Score=24.81 Aligned_cols=95 Identities=12% Similarity=0.126 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHC-CCHHHH
Q 014864 299 PSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEA-NIIGPL 375 (417)
Q Consensus 299 ~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~i~~L 375 (417)
+..--..+.=|++++...+.. .. .+++.|.+-|++. ++.++..|+.+|-.++. |++..+..+... ..|..+
T Consensus 25 ~~~pgylm~EIA~~T~~s~~~~~~-----eim~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l 98 (140)
T 1vdy_A 25 KVAPVYKLEEICDLLRSSHVSIVK-----EFSEFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNL 98 (140)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTT
T ss_pred CCCcHHHHHHHHHHHHhcchhHHH-----HHHHHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHH
Confidence 333444555566666554322 22 3467899999998 89999999999999997 677666666542 223322
Q ss_pred HHHhccCC--------HHHHHHHHHHHHHhhC
Q 014864 376 VALLENAE--------FDIKKEAAWAISNATS 399 (417)
Q Consensus 376 ~~~l~~~~--------~~v~~~a~~~L~nl~~ 399 (417)
.++=..++ ..||..|-.++.-|..
T Consensus 99 ~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 99 FHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp TTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 22211112 4688888777766654
No 175
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=36.79 E-value=80 Score=23.68 Aligned_cols=89 Identities=8% Similarity=-0.086 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh
Q 014864 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336 (417)
Q Consensus 257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 336 (417)
+.+..-..||+.+.- .... ++..+...+....+.-+.++++.+-.++..........+..++.+.+....
T Consensus 25 ~~I~~LT~~a~~~~~-----~a~~-----Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~ 94 (144)
T 1sz9_A 25 PIITTLTKLAEENIS-----CAQY-----FVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTY 94 (144)
T ss_dssp HHHHHHHHHHHHTGG-----GHHH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 445555556665532 1121 344555556667788899999999999876544444566777778777777
Q ss_pred cCCCchhHHHHHHHHHHHHh
Q 014864 337 SGNYKKSIKKEACWTVSNIT 356 (417)
Q Consensus 337 ~~~~~~~v~~~a~~~L~nl~ 356 (417)
... ++.+|.....++.---
T Consensus 95 ~~~-d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 95 LLV-DNTTRTKLINMFKLWL 113 (144)
T ss_dssp HTS-CHHHHHHHHHHHHHHT
T ss_pred HhC-CHHHHHHHHHHHHHHh
Confidence 766 7777776666555543
No 176
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.58 E-value=50 Score=25.24 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=49.8
Q ss_pred ChhHHHHhhC-CCCHHHHHHHHHHHHHhhCC-CchHHHHHHhcCCHHH-HHHHhcC--CCchhHHHHHHHHHhhhhc
Q 014864 160 AVPIFVKLLY-SPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVP-LLAQLNG--QPKLSMLRNATWTLSNFCR 231 (417)
Q Consensus 160 ~i~~L~~ll~-~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~-L~~ll~~--~~~~~~~~~a~~~l~~l~~ 231 (417)
++..|.+-|+ +.++.++..|+.+|-.+..+ ++.+...+....++.. |++++.. .++..++..++..+..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4556667776 47888888899888888754 3667777777778887 7888742 2345677777666655443
No 177
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=33.66 E-value=1.3e+02 Score=24.74 Aligned_cols=76 Identities=4% Similarity=-0.047 Sum_probs=51.6
Q ss_pred hHHHHHhhcCCCchhHHHHHHH----HHHHHhcC--CHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 014864 329 LPCLLNLLSGNYKKSIKKEACW----TVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 402 (417)
Q Consensus 329 l~~L~~ll~~~~~~~v~~~a~~----~L~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 402 (417)
.+.+..++.++ +.-+++.+.. .+..+... +...... ++..+...+.++++-+++.+.|+|..+... +
T Consensus 110 ~~~~~~W~~s~-~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~-----~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~-~ 182 (235)
T 1t06_A 110 QDVADKWIASG-DELKMSAGWSCYCWLLGNRKDNAFSESKISD-----MLEMVKDTIHHSPERTKSAMNNFLNTVAIS-Y 182 (235)
T ss_dssp HHHHHHHHHSC-CHHHHHHHHHHHHHHHHHSCGGGSCHHHHHH-----HHHHHHHHGGGSCHHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHcCc-HHHHHHHHHHHHHHHHhhccccCcChhhHHH-----HHHHHHHHccCChHHHHHHHHHHHHHHHhh-C
Confidence 45678889988 8888888777 55553321 2333332 344555578899999999999999999876 4
Q ss_pred HHHHHHHHh
Q 014864 403 HEQIKYEHT 411 (417)
Q Consensus 403 ~~~~~~l~~ 411 (417)
++.....++
T Consensus 183 ~~~~~~al~ 191 (235)
T 1t06_A 183 VPLHEKAVE 191 (235)
T ss_dssp GGGHHHHHH
T ss_pred HHHHHHHHH
Confidence 454444443
No 178
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=33.50 E-value=2.6e+02 Score=27.98 Aligned_cols=118 Identities=10% Similarity=0.054 Sum_probs=68.9
Q ss_pred hHHHHHhCCChhHHHHhhCCCCHHHHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcC--CCchhHHHHHHHHHhh
Q 014864 151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSN 228 (417)
Q Consensus 151 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~~a~~~l~~ 228 (417)
.++.+++ -..|.+...+.+.+..+...+..+|.+||.-.|.+.+.++.. ++..+..-|.. -..+.-...++.++..
T Consensus 332 ~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~-vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~ 409 (799)
T 1vsy_4 332 CHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDK-ILIDLYDTLADQFINSRHRIISSLKQFTR 409 (799)
T ss_dssp HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHHHHHHTTTTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHH-HHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 3444554 345666667778999999999999999998777555554332 34444444422 2445555666677766
Q ss_pred hhcCCCC--CChhhhhchHHHHHHhhcCCChHHHHHHHHHHHHh
Q 014864 229 FCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270 (417)
Q Consensus 229 l~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~l 270 (417)
+++.-.. .-...+..++..++.-+..+|+.--..++..+..+
T Consensus 410 ~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i 453 (799)
T 1vsy_4 410 VIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSI 453 (799)
T ss_dssp THHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH
Confidence 6643211 11122334455555556666776555566655554
No 179
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=30.83 E-value=3.3e+02 Score=25.24 Aligned_cols=149 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHhhhcCC------ChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCC
Q 014864 75 LPVMVAGVWSN------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148 (417)
Q Consensus 75 l~~l~~~l~s~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~ 148 (417)
++.+.+.|.++ |++. .+..+.++++ .-+.+.+.+-=-+..++..|.++. +.+...|+.++. .
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~---~~~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~ 142 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDY---LLDVVDKLVP---MADFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----N 142 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHH---HSCHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----T
T ss_pred HHHHHHHHcCCccccccCHHH---HHHHHHHHHh---cCCHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----c
Q ss_pred chhHHHHHhCCChhHHHHhhCCCCHH---HHHHHHHHHHHhhCCCchHHHHHHhcCCHHHHHHHhcCCCchhHHHHHHHH
Q 014864 149 SEHTKVVIDHGAVPIFVKLLYSPSDD---VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225 (417)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~ll~~~~~~---i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (417)
+.-+..+...+++..++.++-+.+.. +....=.++..++++.- .|..+.+... +++.-++...++.+....+..
T Consensus 143 s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeL-irrril~nnl--~lL~~vK~~~~~i~~sRLLdl 219 (500)
T 3vld_A 143 SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDEL-IRRRLFDNNL--PYLVSVKGRMETVSFVRLIDF 219 (500)
T ss_dssp CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTH--HHHHHHHHHCCHHHHHHHHHH
T ss_pred cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHH-HHHHHHHHhH--HHHHHHhcCCCceeHHHHHHH
Q ss_pred HhhhhcCCCCCCh
Q 014864 226 LSNFCRGKPQPPF 238 (417)
Q Consensus 226 l~~l~~~~~~~~~ 238 (417)
+.-+...-....+
T Consensus 220 l~il~~~i~~~eF 232 (500)
T 3vld_A 220 LTIEFQFISGPEF 232 (500)
T ss_dssp HHHHHTTCCTTTC
T ss_pred HHHHhcccCcccC
No 180
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=29.65 E-value=1.8e+02 Score=21.76 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=50.9
Q ss_pred ChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 014864 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399 (417)
Q Consensus 328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~ 399 (417)
++..+.+.+... .+.-+-.+++++-.++.+........+..++.+.+.+.....+.++|......+.---.
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 355566666666 78888888899888886332334556677888888888877788888888777765543
No 181
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=25.40 E-value=42 Score=24.62 Aligned_cols=63 Identities=5% Similarity=0.122 Sum_probs=40.1
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhcCC
Q 014864 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD 316 (417)
Q Consensus 244 ~l~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 316 (417)
.+...+.-|..+.+.+...+.|++.+.-. . .. ++..+...+....+.-+.+.++.+..++...
T Consensus 9 ~l~~~L~~L~~s~~sI~~~s~w~l~h~~~-a----~~-----Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 9 SLDRKFQSVTNTMESIQGLSSWCIENKKH-H----ST-----IVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHTGGG-H----HH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHhHHH-H----HH-----HHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 34444445555667788888999987532 1 11 3344555566667777888888888887543
No 182
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=22.90 E-value=94 Score=25.52 Aligned_cols=75 Identities=5% Similarity=0.043 Sum_probs=50.6
Q ss_pred hHHHHhhcCCCChhhHHHHHH----HHHHhhcC--ChHHHHHHHHcCChHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 014864 287 FPRLAEFLMHPSPSVLIPALR----TVGNIVTG--DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360 (417)
Q Consensus 287 ~~~L~~~l~~~~~~v~~~a~~----~L~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 360 (417)
.+.+...+.+++.-.+..+.. .++.+... .+.... .+++.+...+.++ +..+++...|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 355677888888777777777 44552221 222222 2355566678888 99999999999999988777
Q ss_pred HHHHHHH
Q 014864 361 EQIQAVI 367 (417)
Q Consensus 361 ~~~~~l~ 367 (417)
+.....+
T Consensus 184 ~~~~~al 190 (235)
T 1t06_A 184 PLHEKAV 190 (235)
T ss_dssp GGHHHHH
T ss_pred HHHHHHH
Confidence 6555444
No 183
>2l9j_A M2-1, matrix protein 2-1; processivity, transcription CO-factor, viral protein, RNA BI protein; NMR {Human respiratory syncytial virus}
Probab=22.47 E-value=1.3e+02 Score=20.94 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=34.2
Q ss_pred CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCHHHHHHHHhc
Q 014864 369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKYEHTF 412 (417)
Q Consensus 369 ~~~i~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~l~~~ 412 (417)
.|.+..+-..+.+.+.-.+..||.+|.++...-....+....+.
T Consensus 18 LGs~~VlqsYi~~~~nITK~~AC~sl~~il~~L~~~dVk~aRD~ 61 (121)
T 2l9j_A 18 LGVVGVLESYIGSINNITKQSACVAMSKLLTELNSDDIKKLRDN 61 (121)
T ss_dssp CSHHHHHHHHHHTSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hhhHHHHHHHHccccchhHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 36667777788877788899999999999988777766666554
No 184
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.39 E-value=77 Score=18.42 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=13.5
Q ss_pred HHhhhhhhHHHHHHHHhh
Q 014864 24 EGRRRREDNMVEIRKNKR 41 (417)
Q Consensus 24 ~~~~~r~~~~~~lrk~~r 41 (417)
+.|++.++..-.+||.++
T Consensus 11 ~~Rkk~eeler~lrk~kk 28 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKK 28 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457778888888887776
No 185
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.86 E-value=4e+02 Score=23.18 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHhCCHHHHHHhhcCCC
Q 014864 93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED 129 (417)
Q Consensus 93 a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 129 (417)
+.+.+.+++... ++.....+-..+.+.++++..+..
T Consensus 37 gsR~lQ~~l~~~-~~~~~~~i~~ei~~~~~~L~~d~~ 72 (351)
T 3gvo_A 37 GSRFIQQKLERA-TPAERQIVFNEILQAAYQLMTDVF 72 (351)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHHHGGGHHHHHTSTT
T ss_pred chHHHHHHHhhC-CHHHHHHHHHHHHHhHHHHHhChh
Confidence 444444444432 222222333334556666766655
No 186
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=21.38 E-value=1.6e+02 Score=21.47 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=36.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHhhcCCCChhhHHHHHHHHHHhhc
Q 014864 246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314 (417)
Q Consensus 246 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~v~~~a~~~L~~l~~ 314 (417)
...+.-|...-+.+...+.|++.+.-. ... ++..+...+....+.-+...++.+..++.
T Consensus 10 ~~~L~~L~~s~~sI~~~s~w~l~~~~~-a~~---------iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 10 EKKLSELSNSQQSVQTLSLWLIHHRKH-AGP---------IVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHHHHCCSSTTHHHHHHHHHHHTGGG-HHH---------HHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 333444555667888889999987532 111 23444455555555677888888888753
No 187
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.76 E-value=62 Score=24.57 Aligned_cols=73 Identities=5% Similarity=-0.064 Sum_probs=36.4
Q ss_pred CHHHHHhhhcC-CChHHHHHHHHHHHHhhhCCCCCcHHHHHHhCCHHH-HHHhhcCC--CCHHHHHHHHHHHHHHhC
Q 014864 74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR-FVEFLLRE--DYPQLQFEAAWALTNIAS 146 (417)
Q Consensus 74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~-Lv~lL~~~--~~~~~~~~a~~~L~~l~~ 146 (417)
++..+.+.|.+ .++.++..|+..|..++.....+.-.++....++.. |+.+++.. ....++..++..+...+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 44555555553 355555666665555554432222333333344432 45555432 124577777777666665
Done!