BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014866
(417 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 230 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 288
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 123
Query: 289 NLAGTMLGFYPVRVLPSKTAI 309
G M G P+++ S AI
Sbjct: 124 AFNGVMFGDRPLKINHSNNAI 144
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 388
RT+Y N++ + T AD L F GEV +R+ GD TR AFVEF S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 389 SGVVLGSLPIRV 400
+GV+ G P+++
Sbjct: 126 NGVMFGDRPLKI 137
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 230 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 288
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 289 NLAGTMLGFYPVRVLPSKTAI 309
G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 286 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 345
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITTLGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 346 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 400
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 230 IRRTVYVSDIDQQVTE-EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 288
IRRTVYV +++ Q T +QL F G+V R+ GD RFAF+EF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 289 NLAGTMLGFYPVRVLPSKTAI 309
G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 286 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 345
AAL+ T LG P L + V+P+ + DE RT+Y N++ + T AD
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI----DE---IRRTVYVGNLNSQTTTADQ 85
Query: 346 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 400
L F GEV +R+ GD TR AFVEF S AL +GV+ G P+++
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
SL ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 158 SLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 214
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF+D+E R +L L ++ ++V+P +T
Sbjct: 215 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 245
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 378
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
ES +L + I+V P +T
Sbjct: 219 KESVRTSLALDESLFRGRQIKVIPKRT 245
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 378
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYI 218
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF+D+E R +L L ++ ++V+P +T
Sbjct: 219 EFSDKESVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 378
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
ES +L + I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEEGARAALNLAG 292
+YV++ E + LF G VVD R N+ RF +++ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 293 TML-GFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 351
+L YP++V S P+ T PR+ E R +Y TNID KV + DV+ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 352 VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404
G+V +R+ ++ +V + A AL+ +G LG+ + V SK
Sbjct: 780 Y-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLA 291
R +YV++ID +V E+ + F GQV RI N F ++ T + A AL+ A
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 292 GTMLGFYPVRVLPS-------KTAIAPVNPTFLPRTEDERE-------------MCARTI 331
G LG + V+ S KT ++ + L ++ + E + ++++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 332 YCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFV-MAESAIAALNCSG 390
TN+D V +A ++ FES G++YR+ L H A VEF+ + ++ A+L G
Sbjct: 877 GVTNVDGTVNEARLRSLFESY-GKLYRVVL----HPEHEGAVVEFLDIHDAGKASLALEG 931
Query: 391 VVLGSLPIRVS 401
+G + ++
Sbjct: 932 HEIGGRLLHIT 942
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 330 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 385
T+ TN+ +++ ++K+FF+ CG + R+ +L D ++A +EF +AA
Sbjct: 591 TVLVTNLPSDISENELKIFFKD-CGNIIRIFILEDNQKDVKVAQIEFSETSEVLAA 645
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 202 AAVRRKKSFGQGKRRMNSRTSLAQ---REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV 258
AA+ +K+ GQ + Q REE+ TV V+++ ++E +L F CG +
Sbjct: 560 AALSKKRKPGQEGDVFKKSKPIEQHRNREEL---TVLVTNLPSDISENELKIFFKDCGNI 616
Query: 259 VDCRICGDPNSVLRFAFIEFTDEEGARAA 287
+ I D ++ A IEF++ AA
Sbjct: 617 IRIFILEDNQKDVKVAQIEFSETSEVLAA 645
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 22/184 (11%)
Query: 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNL 290
+T++V ++ V +EQ+ F G+VVD R + R F +EF E A+ AL L
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 291 AGTMLGFYPVR--VLPSKTAIAPV----NPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 344
AG L PVR + + A P N +F + + TI+ D T D
Sbjct: 509 AGHDLMGRPVRLDLARERGAYTPGSGRDNSSF----KKPAQSSGNTIFIKGFD---TSLD 561
Query: 345 VKLFFESV------CGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSL 396
+ S+ CGE+ R+ + DY S +A+++F S A +G LG
Sbjct: 562 IHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSDLGGY 621
Query: 397 PIRV 400
+ V
Sbjct: 622 SLYV 625
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 20/188 (10%)
Query: 221 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEF 278
T+ + E + ++YV D+D V+E L +F G V R+C D + L +A++ F
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF 83
Query: 279 TDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 338
D + A+ A+ L F P++ + + +P+ R+ A I+ N+
Sbjct: 84 NDHDAAKTAIE----KLNFTPIKGKLCRIMWSQRDPSL-------RKKGAGNIFIKNLHP 132
Query: 339 KVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALNC-SGVVLG 394
+ D K ++ SV G + ++ D ++ +V F ESA A++ +G++L
Sbjct: 133 DI---DNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLN 189
Query: 395 SLPIRVSP 402
I V P
Sbjct: 190 GQEIYVGP 197
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 152 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 208
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF+D+E R +L L ++ ++V+P +T
Sbjct: 209 EFSDKESVRTSLALDESLFRGRQIKVVPKRT 239
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 378
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFSD 212
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
ES +L + I+V P +T
Sbjct: 213 KESVRTSLALDESLFRGRQIKVVPKRT 239
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYI 209
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF+D+E R +L L ++ ++V+P +T
Sbjct: 210 EFSDKESVRTSLALDESLFRGRQIKVVPKRT 240
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 378
E++ E AR+IY N+D T +++ F CG V R+ +L D + H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEFSD 213
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
ES +L + I+V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVVPKRT 240
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 40/254 (15%)
Query: 174 NGFNGGF----FANNSLIFNNHNARNGNV--NANAAVRRKKS-FGQGKRRMNSRTSLAQR 226
NG++ G+ F N++ N NG ++ A R + G G+RR +
Sbjct: 117 NGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERR---------Q 167
Query: 227 EEIIRRTVYVSDIDQQVTEEQLAALF------VGCGQVVDCRICGDPNSVLRFAFIEFTD 280
E TV+V D+ VT+ L F V +VV+ R G + F+ F D
Sbjct: 168 AEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKG---YGFVRFAD 224
Query: 281 E-EGARAALNLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRTEDEREMCARTIYCTN 335
E E RA + G P+R P+ + P + E + TI+
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGA 284
Query: 336 IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF---VMAESAIAALNCSGVV 392
+D+ VT+ D+K F GE+ +++ R FV++ AE A++ LN G
Sbjct: 285 VDQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GTQ 337
Query: 393 LGSLPIRVSPSKTP 406
LG IR+S ++P
Sbjct: 338 LGGQSIRLSWGRSP 351
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNL 290
++YV ++D VTE L +F G V R+C D + L +A++ F ++ AL
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE- 105
Query: 291 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 350
L + P++ P + + +P R+ A IY N+D + + F
Sbjct: 106 ---ELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKNLDPAIDNKALHDTF- 154
Query: 351 SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 402
S G++ ++ D + +S FV + AESA +A+ + +G++L + V P
Sbjct: 155 SAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGP 208
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 24/199 (12%)
Query: 212 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NS 269
Q ++ + S +Q E ++YV D++ V+E L +F G V R+C D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 270 VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR 329
L +A++ F D E R A+ L + P++ + + +P+ R+ +
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL-------RKKGSG 126
Query: 330 TIYCTNIDKKVTQADVKLFFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFV---MAESAI 383
I+ N+ + D K ++ SV G++ ++ D + ++ FV F A+ AI
Sbjct: 127 NIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Query: 384 AALNCSGVVLGSLPIRVSP 402
ALN G++L I V+P
Sbjct: 184 DALN--GMLLNGQEIYVAP 200
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 288
+YV +I+ + T+EQ LF G +V + D + L+ F F+ + E A A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
S+ ++ E R++YV ++D T E+L A F GCG V + C + G P FA+I
Sbjct: 153 SVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYI 209
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF D+E R +L L ++ ++V+P +T
Sbjct: 210 EFCDKESVRTSLALDESLFRGRQIKVVPKRT 240
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVM 378
E++ E AR+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFCD 213
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
ES +L + I+V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVVPKRT 240
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFIEFTD 280
+E I ++VYV ++D VT E+L + F CG V + C + G P FA+IEF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 281 EEGARAALNLAGTMLGFYPVRVLPSKTAI 309
AL L G+ML P++V P +T +
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 322 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 379
D+ + A+++Y N+D VT +++ F S CG V R+ +L D H A++EF
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 380 ESAIAALNCSGVVLGSLPIRVSPSKTPV 407
AL +G +L P++V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLKVTPKRTNV 134
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALNLA 291
T+++ ++ + ++Q+ F G+V+ R+ + R F ++F E A+ AL L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELH 371
Query: 292 GTMLGFYPVR--VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
G L PVR + + A P + + + +++I+ D + ++ ++
Sbjct: 372 GCDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLEESKIRESL 431
Query: 350 E---SVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404
E + CGE+ R+ + D S IA+++F S AL SG LG + V +K
Sbjct: 432 EGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYVDEAK 491
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 232 RTVYVSDIDQQVTE----EQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAR 285
++++V D + E E L F CG++ + D + A+I+F D+
Sbjct: 411 QSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFS 470
Query: 286 AALNLAGTMLGFY 298
AL L+G+ LG Y
Sbjct: 471 KALELSGSDLGGY 483
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 322 DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMA 379
D+ E+ +R++Y N+D K T + +F+S CG V R+ +L D H +VEFV
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 380 ESAIAALNCSGVVLGSLPIRVSPSKT--PVRPRAPRLP 415
ES I A+ + ++++P +T P R LP
Sbjct: 153 ESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLP 190
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 224 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV-----VDCRICGDPNSVLRFAFIEF 278
+EEI R+VYV ++D + T +Q+ A F CG V + + G P ++EF
Sbjct: 93 TDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGC---CYVEF 149
Query: 279 TDEEGARAALNLAGTMLGFYPVRVLPSKTAI 309
++E A+ L + +++ P +T +
Sbjct: 150 VNKESIINAMALNDSFFNERQLKITPKRTNL 180
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 274
R +QR+ +RR+ V++ ++D+ + + + F G ++ C++ D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 275 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 330
F+ F EE A +++ ML L K F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGML-------LNGKKVYVG---KFIPRKEREKELGEKAKLFT 183
Query: 331 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR----IAFVEFVMAESAIAA 385
+Y N + +K FFE G++ +++ ++ +AF AE+A+ A
Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPY-GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 386 LN 387
LN
Sbjct: 243 LN 244
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 290
++YV D+ Q V E L F G V+ R+C D L +A++ F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD- 61
Query: 291 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 350
+ F VR P + + +P+ R ++ N+D+ + + F
Sbjct: 62 ---TMNFDLVRNKPIRIMWSQRDPSL-------RRSGVGNVFIKNLDRAIDNKAIYDTF- 110
Query: 351 SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN-CSGVVLGSLPIRV 400
S G + ++ D +++ FV F E+A +++ +G++L + V
Sbjct: 111 SAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 20/160 (12%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGA-RAALNL 290
++Y D+D +VTE L LF VV R+C D N L +A+I F++ A RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 291 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 350
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 351 SVC--GEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN 387
+ G + ++ D S FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 11/183 (6%)
Query: 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEEGARAALNL 290
+T++ ++ Q+ + F G+VVD R+ D S + IEF E A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 291 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 350
G +L VR+ + P N + E + +RTIY + + ++K
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQ---SRTIYVRGFSSSLGEDEIKKELR 500
Query: 351 S---VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 407
S CGEV R+ + D F + AL SG +G I V S
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIGGGNIHVEES---- 556
Query: 408 RPR 410
RPR
Sbjct: 557 RPR 559
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 274
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 275 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 332
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 181 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 233
Query: 333 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
NID+ VT+ + + FE GE+ L D +R FV F ESA AA++
Sbjct: 234 IKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 158 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 202
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTD-EEGARAALN 289
++YV D+D VT+ QL F G VV R+C D L + ++ FT+ ++ ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L L P+RV+ S R R A I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 350 ESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSP 402
S G + ++ D S FV++ ESA A+ +G++L + V P
Sbjct: 145 SSF-GNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFA-FIEF-TDEEGARAALNLA 291
+YV ++D +++E+L +F G V ++ DPN + + F+ F T EE A L+
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 292 GTMLGFYPVRV 302
G M+ P+ V
Sbjct: 380 GKMIESKPLYV 390
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 30/211 (14%)
Query: 216 RMNSRTSLAQREEIIRR----TVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNSV 270
++N + RE+ I + +++V D+ V E + +LF +I DP +
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 271 LR--FAFIEFTDEEGARAAL-NLAGTMLGFYPVRV---LPSKTA--IAPVN--PTFLP-- 318
+ + F+ FTDE ++AL + G + G P+RV P A +PVN P +P
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPV 285
Query: 319 -------RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI 371
+ T++ + K V++ ++K F++ GE+ +++
Sbjct: 286 GFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNF-GEIVYVKI----PPGKGC 340
Query: 372 AFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401
FV+FV +SA A+N G LG+ IR+S
Sbjct: 341 GFVQFVNRQSAEIAINQLQGYPLGNSRIRLS 371
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 223 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRI-----CGDPNSVLRFAFIE 277
+ Q + TV+V + + V+EE+L LF G++V +I CG F++
Sbjct: 294 VPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCG---------FVQ 344
Query: 278 FTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNI 336
F + + A A+N L G LG +R+ + NP P + ++ TI T++
Sbjct: 345 FVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQ----NPIAAPALNYQSQVSQTTIPATSL 400
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 207
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 288
VY+ ++D ++ +++ +F G++ + D R F F+ F+ E A+AA+
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 208
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEEGARAAL 288
VYV +IDQ TEE+ LF G++ + D S F F+ FT + A AA+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAA 287
I ++YV D+ +V+E+ L +F G V + R+C D N+ L +A++ + + A A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 288 LNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKL 347
L+ L P+R + + +P+ R+ ++ N+DK + D K
Sbjct: 68 LD----TLNNTPIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGI---DHKA 113
Query: 348 FFE--SVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVSPS 403
++ S G + +++ D +S++ FV + ESA A+ +G+++ + V P
Sbjct: 114 LYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPF 173
Query: 404 KT 405
K+
Sbjct: 174 KS 175
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 193 ARNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRRTV--YVSDIDQQVTEEQL 248
A+N N N + K G+ ++++ L E + V Y+ +ID + ++L
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKL 300
Query: 249 AALFVGCGQVVDCRICGDPNSVLR--FAFIEFT-DEEGARAALNLAGTMLGFYPVRV 302
+F G + + D + F F+ +T +E RA + G M+G P+ V
Sbjct: 301 REVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF G V R+C D + L +A++ F + E+G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+M ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
S G++ ++ D ++ FV F ESA AA+ + +G++L
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 289
VY+ ++D ++TE++ + LF G++ + D N R F F+ + + E A+ A++
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD 319
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 112 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 159
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 160 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 204
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 274
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 182
Query: 275 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 332
F+ + E A A+ ML L K + + R EM A IY
Sbjct: 183 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNIY 235
Query: 333 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
NID VT+ + + FE GE+ L D +R FV + ESA AA++
Sbjct: 236 IKNIDPDVTEEEFRKIFEQF-GEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 157 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 201
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 274
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 179
Query: 275 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 332
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 180 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 232
Query: 333 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
N+D+++++ + + FE GE+ L D +R FV + +SA AA++
Sbjct: 233 IKNLDQEISEEEFRQMFEKF-GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-----GDPNSVLRFAFI 276
SL +++EI R+VYV ++D + E+L A F GCG + I G P FA+I
Sbjct: 86 SLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKG---FAYI 142
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF +E AL + T+ ++V+ +T
Sbjct: 143 EFGSKEFVETALAMNETLFRGRQIKVMSKRT 173
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 305 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 364
S T +A V P L E+++E+ R++Y N+D + +++ F CG + R+ +L +
Sbjct: 76 STTGLAAV-PLSL---EEKQEIDTRSVYVGNVDYGASAEELEAHFHG-CGTINRVTILCN 130
Query: 365 YH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405
H A++EF E AL + + I+V +T
Sbjct: 131 KADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRT 173
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 290
++YV D+ Q VTE L F G ++ R+C D L +A++ F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 291 AG-TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 350 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 393
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 275
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 276 IEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 330
+ F +E A A++ + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 331 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
+Y N + +K F G ++++ D + ++ FV F E A A++
Sbjct: 192 NVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 135 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNH-NA 193
GD D R L+E+F K P S+ ++N GF GF + F H +A
Sbjct: 199 GDDMNDER-LKEMFGKYGPAL------SVKVMTDDNGKSKGF--GFVS-----FERHEDA 244
Query: 194 RNGNVNANAAVRRKKSF--GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQ 242
+ N KS G+ ++++ +T L ++ E +++ +YV ++D
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 243 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALNLAGTMLGFYPVR 301
+ +E+L F+ G + ++ + F F+ F+ EE +A + G ++ P+
Sbjct: 305 IDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 302 V 302
V
Sbjct: 365 V 365
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 205
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 274
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 275 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 332
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 333 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
NID++VT + + FE GE+ L D +R FV F +SA AA++
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + + +G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + +S FV + AE+A A+ + +G++L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLL 205
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 274
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 275 FIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCAR--TIY 332
F+ + E A A+ ML L K + + R EM A +Y
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 333 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
NID++VT + + FE GE+ L D +R FV F +SA AA++
Sbjct: 237 IKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-----GDPNSVLRFAFI 276
SL +++EI R+VYV ++D + E+L A F GCG + I G P FA+I
Sbjct: 86 SLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKG---FAYI 142
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307
EF +E AL + T+ ++V+ +T
Sbjct: 143 EFGSKEFVETALAMNETLFRGRQIKVMSKRT 173
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 305 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD 364
S T +A V P L E+++E+ R++Y N+D + +++ F CG + R+ +L +
Sbjct: 76 STTGLATV-PLSL---EEKQEIDTRSVYVGNVDYGASAEELEAHFHG-CGTINRVTILCN 130
Query: 365 YH--HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405
H A++EF E AL + + I+V +T
Sbjct: 131 KADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRT 173
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 221 TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF 278
T+ AQ+ ++YV ++D VTE L LF GQV R+C D + L +A++ +
Sbjct: 37 TTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 96
Query: 279 -TDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNID 337
+ E+G +A L T++ P R++ S+ +P R+ ++ N+D
Sbjct: 97 NSSEDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLD 144
Query: 338 KKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ + F + G + ++ D +S FV + AE+A A+ + +G++L
Sbjct: 145 HAIDNKALHDTF-AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLL 201
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFA 274
R +QR+ +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYG 179
Query: 275 FIEFTDEEGARAAL-NLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCART 330
F+ + E A A+ ++ G +L V V +P K ++ +E +
Sbjct: 180 FVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---------EEMKANFTN 230
Query: 331 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
IY NID VT D + FE G++ + D +R FV ++ E+A A++
Sbjct: 231 IYVKNIDLDVTDEDFRELFEK-HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVD 287
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 24/186 (12%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR--FAFIEFTDEEGARAAL-NL 290
VYV I ++ E+ + F G + + DP + FAF+E+ EGA+ AL +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 291 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE---DEREMCART---IYCTNIDKKVTQAD 344
G ++G ++V P+ +P+ + DE + A++ IY +I +++ D
Sbjct: 192 NGALMGGRNIKV---------GRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEED 242
Query: 345 VKLFFESVCGEVY-RLRLLGDYHHSTRIAFVEFV---MAESAIAALNCSGVVLGSLPIRV 400
+K FE+ +Y +L H F+E+ + AIA++N LG +RV
Sbjct: 243 IKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFD--LGGQLLRV 300
Query: 401 SPSKTP 406
S TP
Sbjct: 301 GRSITP 306
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 315
EF + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 378
E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EF
Sbjct: 85 EEKKEIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAE 143
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
S AA+ V I+V P +T
Sbjct: 144 RNSVDAAVAMDETVFRGRTIKVLPKRT 170
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 275
R +QR+ +R++ +++ ++D+ + + L F G ++ C++ D N + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 276 IEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCART---- 330
+ F +E A A++ + G +L V V F R E E E+ AR
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 331 -IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAALN 387
+Y N + + +K +F G ++++ D H +R FV F E A A++
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQY-GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALN- 289
++YV D+ VTE L F G ++ R+C D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 350 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 393
+ S G + +++ D + S FV F E+A A++ +G++L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 211 GQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQLAALFVGCGQVVDC 261
G+ ++++ +T L ++ E +++ +YV ++D + +E+L F G +
Sbjct: 264 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSA 323
Query: 262 RICGDPNSVLRFAFIEFTD-EEGARAALNLAGTMLGFYPVRV 302
++ + F F+ F+ EE +A + G ++ P+ V
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF-TDEEGARAALN 289
++YV ++D VTE L LF G V R+C D + L +A++ + T +G +A
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ A I+ N+D + + F
Sbjct: 121 LNYTLIKGRPCRIMWSQ------------RDPALRKTGAGNIFIKNLDAAIDNKALHDTF 168
Query: 350 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D H +++ FV + E+A A+ + +G++L
Sbjct: 169 -AAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLL 213
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAALN 289
VYV +I+ +VT+E+ LF G+V + D R F F+ FT E A A++
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVD 299
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDC-RICGDPNSVLRFAFI 276
S +++EI +R+VYV ++D T + L A F CG + + C + G P +A+I
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 277 EFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPT 315
EF + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVM 378
E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EF
Sbjct: 85 EEKKEIDKRSVYVGNVDYGGTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAE 143
Query: 379 AESAIAALNCSGVVLGSLPIRVSPSKT 405
S AA+ V I+V P +T
Sbjct: 144 RNSVDAAVTMDETVFRGRTIKVLPKRT 170
>sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2
Length = 759
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 23/161 (14%)
Query: 232 RTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNSVLRFAFIEFTDEEGARAA 287
RT++V +I+ V + +L ALF G + C+ G F + + D +RAA
Sbjct: 166 RTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRG-------FVMVSYNDIRASRAA 218
Query: 288 LN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVK 346
+ L G +L R L +I NP+ E+++ T+ N+ V+ D++
Sbjct: 219 MRALQGKLLK---KRKLDIHFSIPKDNPS-------EKDVNQGTLVVFNLAPSVSNRDLE 268
Query: 347 LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 387
F V GE+ +R + H + F + A++A+ ALN
Sbjct: 269 NIF-GVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALN 308
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD-EEGARAALN 289
++YV ++D VTE L LF GQV R+C D + L +A++ + D G RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 103 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 150
Query: 350 ESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL-NCSGVVL 393
+ G + ++ D + S FV + AE+A A+ + +G++L
Sbjct: 151 -AAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLL 195
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FAFIEFTDEEGARAAL 288
+Y+ +ID +V +E+ LF G++ + D R F F+ F+ E A+AA+
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 21/167 (12%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN- 289
++YV D+ VTE L F G ++ R+C D + L +A+I F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 350 E--SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC-SGVVL 393
+ S G + ++ D H S FV F E+A A+N +G++L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLL 163
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAF 275
R +QR+ +R++ +++ +++ + + L F G ++ C++ D + F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 276 IEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTN 335
+ F E A+ A+N ML + K + F R E E E+ AR + TN
Sbjct: 143 VHFETHEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFTN 192
Query: 336 IDKKVTQADV------KLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAAL 386
I K DV LF S G++ ++++ D HS FV F E A A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLF--SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 26/176 (14%)
Query: 140 DMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNV- 198
D + LQ+LFS+ M K +N G + G F N F H V
Sbjct: 203 DEQGLQDLFSQFGKMLS-------VKVMRDNSGHSRCFG--FVN----FEKHEEAQKAVV 249
Query: 199 --NANAAVRRKKSFGQGKRRMNSRTSLAQREEIIRR---------TVYVSDIDQQVTEEQ 247
N R G+ ++R+ + L +R E +++ +YV ++D + +++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 248 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALNLAGTMLGFYPVRV 302
L F G + ++ + F F+ F+ EE +A + G ++G P+ V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 32/181 (17%)
Query: 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEF-TDEEGARAALNLAG 292
+++ ++D++ +L ALF G VV+C + V + F+ T+++G A NL G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDV------VKNYGFVHMETEQQGRDAIQNLNG 62
Query: 293 TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV 352
L + ++V +K+ AP PT I+ N+ K +V+ F+
Sbjct: 63 YTLNEFAIKVEAAKSRRAPNTPT-------------TKIFVGNLTDKTRAPEVRELFQKY 109
Query: 353 CGEVYRLRLLGDYHHSTRIAFVEFVM---AESAIAALNCSGVVLGSLPIRVSPSKTPVRP 409
G V ++ +Y FV + AI LN G V+ P++V S + VRP
Sbjct: 110 -GTVVECDIVRNY------GFVHLDCVGDVQDAIKELN--GRVVDGQPLKVQVSTSRVRP 160
Query: 410 R 410
+
Sbjct: 161 K 161
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 220 RTSLAQREEIIRRT----VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLR-FA 274
R +QR+ +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 133 RIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 192
Query: 275 FIEF-TDEEGARAALNLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRTEDEREMCART 330
F+ + TDE ++A ++ G +L V V +P K + DE +
Sbjct: 193 FVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF---------DEMKANFTN 243
Query: 331 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVEFVMAESAIAAL 386
IY NI+ +VT + + FE G+V L D S FV F E A A+
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKY-GDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAV 300
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF-TDEEGARAALN 289
++YV ++D VTE L LF G V R+C D + L +A++ + T +G +A
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 290 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDVAIDNKALHDTF 169
Query: 350 ESVCGEVYRLRLLGDYHHSTR-IAFVEFVMAESAIAAL-NCSGVVLGSLPIRVS 401
+ G + ++ D + +++ FV + E+A A+ + +G++L + V
Sbjct: 170 -AAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVG 222
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEEGARAALNLA 291
++YV D+D V E L LF V + R+C D + L +A++ F + E A A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 117
Query: 292 GTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE- 350
L + P+R P + ++ +P+ R ++ N+D + D K +E
Sbjct: 118 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASI---DNKALYET 165
Query: 351 -SVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVL 393
S G + ++ D S FV+F E+A AA++ +G++L
Sbjct: 166 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLL 211
>sp|Q8VWF5|AML5_ARATH Protein MEI2-like 5 OS=Arabidopsis thaliana GN=ML5 PE=1 SV=1
Length = 800
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 232 RTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNSVLRFAFIEFTDEEGARAA 287
RT++V +I+ V + +L ALF G + C+ G F I + D AR A
Sbjct: 168 RTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRG-------FVMISYYDIRSARMA 220
Query: 288 LNLAGTMLGFYPV--RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADV 345
+ L P+ R L +I NP+ E++M T+ N+D ++ D+
Sbjct: 221 MR----SLQNKPLRRRKLDIHFSIPKDNPS-------EKDMNQGTLVVFNLDPSISNDDL 269
Query: 346 KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404
F GE+ +R H + F + AE+A+ ALN C + I+V PS+
Sbjct: 270 HGIF-GAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCE---IAGKRIKVEPSR 325
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 290
TVYV +D++V+E L LF+ G VV+ + D + F+EF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 291 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 348
M+ Y P+RV +K + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 349 FESVCG--------EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 400
+++ ++ R G+ I F F +++AI A+N G L + PI V
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPITV 174
Query: 401 S 401
S
Sbjct: 175 S 175
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNL 290
TVYV +D++V+E L LF+ G VV+ + D + F+EF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 291 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLF 348
M+ Y P+RV +K + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 349 FESVCG--------EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 400
+++ ++ R G+ I F F +++AI A+N G L + PI V
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPITV 174
Query: 401 S 401
S
Sbjct: 175 S 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,057,994
Number of Sequences: 539616
Number of extensions: 6337126
Number of successful extensions: 48278
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 490
Number of HSP's that attempted gapping in prelim test: 28678
Number of HSP's gapped (non-prelim): 11320
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)