Query 014866
Match_columns 417
No_of_seqs 533 out of 2663
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-42 7E-47 343.8 24.4 255 130-407 4-350 (352)
2 TIGR01628 PABP-1234 polyadenyl 100.0 9.6E-39 2.1E-43 337.9 22.5 245 131-407 2-262 (562)
3 KOG0145 RNA-binding protein EL 100.0 8.2E-38 1.8E-42 284.1 18.9 252 132-406 44-358 (360)
4 KOG0117 Heterogeneous nuclear 100.0 8.2E-38 1.8E-42 302.8 18.4 241 131-413 85-338 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 3.7E-36 8E-41 318.2 24.0 257 129-406 88-364 (562)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 5.5E-36 1.2E-40 310.6 22.9 237 130-409 59-310 (578)
7 KOG0148 Apoptosis-promoting RN 100.0 1.2E-34 2.7E-39 265.0 19.7 230 127-411 4-243 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.2E-34 1.1E-38 295.9 25.7 244 129-406 2-351 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 3.3E-34 7.1E-39 296.0 23.2 256 128-406 88-448 (457)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.3E-33 9.4E-38 289.0 24.2 250 130-406 97-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.2E-33 1.4E-37 290.2 22.7 251 128-405 174-501 (509)
12 KOG0144 RNA-binding protein CU 100.0 1.7E-33 3.8E-38 271.6 16.8 261 130-410 35-508 (510)
13 KOG0127 Nucleolar protein fibr 100.0 1.1E-32 2.4E-37 272.4 21.1 256 130-406 6-378 (678)
14 KOG0123 Polyadenylate-binding 100.0 7.9E-33 1.7E-37 275.2 17.9 237 131-406 3-246 (369)
15 TIGR01645 half-pint poly-U bin 100.0 6E-31 1.3E-35 273.5 23.8 156 129-306 107-282 (612)
16 KOG0110 RNA-binding protein (R 100.0 2.5E-31 5.5E-36 270.5 15.1 322 79-406 322-693 (725)
17 TIGR01659 sex-lethal sex-letha 100.0 1E-29 2.3E-34 251.5 21.8 170 226-410 102-279 (346)
18 TIGR01645 half-pint poly-U bin 100.0 1.2E-28 2.7E-33 256.3 21.9 178 229-410 105-288 (612)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-27 4.4E-32 237.1 21.3 163 230-407 2-172 (352)
20 TIGR01622 SF-CC1 splicing fact 100.0 4.7E-27 1E-31 242.7 22.2 176 228-406 86-266 (457)
21 KOG0123 Polyadenylate-binding 99.9 8.3E-28 1.8E-32 239.3 13.4 257 130-410 77-353 (369)
22 KOG0144 RNA-binding protein CU 99.9 6.3E-27 1.4E-31 226.3 12.6 168 228-409 31-209 (510)
23 TIGR01659 sex-lethal sex-letha 99.9 1.6E-26 3.5E-31 228.8 13.3 158 128-307 106-274 (346)
24 KOG0148 Apoptosis-promoting RN 99.9 8.1E-26 1.8E-30 207.2 12.1 157 131-312 64-242 (321)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-24 3.5E-29 226.8 22.6 175 227-406 171-375 (509)
26 KOG0145 RNA-binding protein EL 99.9 8.1E-25 1.8E-29 199.5 13.2 167 229-410 39-213 (360)
27 KOG0117 Heterogeneous nuclear 99.9 5.6E-24 1.2E-28 206.8 18.8 167 223-410 75-252 (506)
28 KOG0131 Splicing factor 3b, su 99.9 8.9E-25 1.9E-29 190.0 11.5 167 229-409 7-180 (203)
29 TIGR01648 hnRNP-R-Q heterogene 99.9 8.8E-24 1.9E-28 219.8 21.0 161 228-408 55-224 (578)
30 KOG0127 Nucleolar protein fibr 99.9 1.6E-23 3.5E-28 207.7 17.0 176 231-407 5-197 (678)
31 KOG0124 Polypyrimidine tract-b 99.9 2E-23 4.2E-28 198.2 15.6 251 130-403 114-532 (544)
32 KOG0147 Transcriptional coacti 99.9 1.9E-23 4.1E-28 208.3 11.1 254 127-404 177-526 (549)
33 KOG0124 Polypyrimidine tract-b 99.9 9.5E-23 2E-27 193.6 11.1 178 230-411 112-295 (544)
34 KOG0131 Splicing factor 3b, su 99.9 6.2E-23 1.3E-27 178.6 7.0 158 129-308 9-177 (203)
35 KOG0109 RNA-binding protein LA 99.9 2E-22 4.3E-27 186.7 10.8 150 233-411 4-155 (346)
36 KOG0146 RNA-binding protein ET 99.9 1.4E-21 3.1E-26 179.0 12.7 187 223-410 11-369 (371)
37 KOG0147 Transcriptional coacti 99.8 1E-20 2.2E-25 188.9 6.0 179 227-407 175-359 (549)
38 KOG4205 RNA-binding protein mu 99.8 3.1E-19 6.8E-24 172.4 11.0 170 230-408 5-178 (311)
39 KOG0109 RNA-binding protein LA 99.8 2.5E-19 5.4E-24 166.2 8.6 143 130-308 3-150 (346)
40 KOG4212 RNA-binding protein hn 99.7 1.1E-16 2.4E-21 155.6 19.0 153 129-302 44-288 (608)
41 KOG4205 RNA-binding protein mu 99.7 5.5E-18 1.2E-22 163.8 8.9 161 128-307 5-175 (311)
42 KOG0105 Alternative splicing f 99.7 2.8E-16 6.1E-21 137.3 14.8 164 230-400 5-184 (241)
43 KOG4206 Spliceosomal protein s 99.7 1.1E-15 2.5E-20 138.3 16.3 170 230-404 8-220 (221)
44 KOG0110 RNA-binding protein (R 99.7 1.6E-16 3.5E-21 162.9 8.2 159 132-307 518-692 (725)
45 KOG1190 Polypyrimidine tract-b 99.6 9E-15 2E-19 141.5 18.7 169 231-406 297-491 (492)
46 KOG1190 Polypyrimidine tract-b 99.6 6E-15 1.3E-19 142.7 17.3 168 233-407 152-374 (492)
47 PLN03134 glycine-rich RNA-bind 99.6 2.2E-15 4.7E-20 131.5 12.1 80 328-408 34-116 (144)
48 KOG4211 Splicing factor hnRNP- 99.6 4.3E-15 9.2E-20 147.1 15.4 245 134-402 15-354 (510)
49 KOG4211 Splicing factor hnRNP- 99.6 7.8E-15 1.7E-19 145.3 16.0 170 229-403 8-179 (510)
50 KOG4212 RNA-binding protein hn 99.6 2.9E-14 6.2E-19 139.0 16.8 179 229-408 42-296 (608)
51 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.8E-19 126.7 11.2 79 229-307 32-113 (144)
52 KOG1548 Transcription elongati 99.6 9.3E-14 2E-18 132.2 17.3 175 228-405 131-351 (382)
53 KOG0120 Splicing factor U2AF, 99.6 6.6E-14 1.4E-18 142.0 17.2 251 129-405 175-491 (500)
54 KOG0106 Alternative splicing f 99.6 5.9E-15 1.3E-19 134.8 7.5 158 232-402 2-167 (216)
55 KOG1457 RNA binding protein (c 99.5 5.8E-14 1.3E-18 126.3 12.7 163 228-393 31-273 (284)
56 PF00076 RRM_1: RNA recognitio 99.5 4.4E-14 9.5E-19 106.9 8.5 68 234-301 1-70 (70)
57 PF00076 RRM_1: RNA recognitio 99.5 7.6E-14 1.6E-18 105.6 9.7 68 331-399 1-70 (70)
58 PLN03120 nucleic acid binding 99.5 2.1E-13 4.5E-18 127.8 10.8 78 230-308 3-80 (260)
59 KOG0125 Ataxin 2-binding prote 99.5 1.8E-13 3.8E-18 129.5 10.3 80 328-408 96-176 (376)
60 PLN03120 nucleic acid binding 99.5 4.4E-13 9.5E-18 125.7 11.9 77 328-406 4-80 (260)
61 KOG0146 RNA-binding protein ET 99.5 1.8E-13 3.8E-18 126.1 9.0 77 230-306 284-363 (371)
62 COG0724 RNA-binding proteins ( 99.5 1.1E-12 2.3E-17 124.0 14.0 156 231-387 115-285 (306)
63 KOG0122 Translation initiation 99.4 3.3E-13 7.2E-18 123.1 9.0 79 327-406 188-269 (270)
64 PF14259 RRM_6: RNA recognitio 99.4 1.3E-12 2.8E-17 99.4 9.8 68 331-399 1-70 (70)
65 KOG0121 Nuclear cap-binding pr 99.4 4.3E-13 9.3E-18 110.9 7.1 78 228-305 33-113 (153)
66 PLN03121 nucleic acid binding 99.4 2.3E-12 4.9E-17 119.1 11.0 78 230-308 4-81 (243)
67 KOG0125 Ataxin 2-binding prote 99.4 1.4E-12 2.9E-17 123.5 8.7 79 229-307 94-173 (376)
68 PF14259 RRM_6: RNA recognitio 99.4 2.1E-12 4.5E-17 98.2 8.2 68 234-301 1-70 (70)
69 KOG0122 Translation initiation 99.4 2.4E-12 5.1E-17 117.6 8.7 80 228-307 186-268 (270)
70 KOG1456 Heterogeneous nuclear 99.3 8.3E-11 1.8E-15 113.1 19.4 162 231-396 287-475 (494)
71 smart00362 RRM_2 RNA recogniti 99.3 7.2E-12 1.5E-16 93.9 9.9 71 330-401 1-72 (72)
72 KOG0149 Predicted RNA-binding 99.3 1.8E-12 4E-17 117.9 7.3 77 231-307 12-90 (247)
73 KOG1365 RNA-binding protein Fu 99.3 7.4E-12 1.6E-16 120.6 11.4 251 134-403 65-359 (508)
74 PLN03121 nucleic acid binding 99.3 9E-12 2E-16 115.1 11.4 76 328-405 5-80 (243)
75 KOG0121 Nuclear cap-binding pr 99.3 3.2E-12 6.8E-17 105.8 7.0 77 326-403 34-113 (153)
76 KOG0105 Alternative splicing f 99.3 1E-11 2.2E-16 108.9 10.4 138 129-296 6-176 (241)
77 smart00362 RRM_2 RNA recogniti 99.3 9.5E-12 2.1E-16 93.2 9.0 71 233-303 1-72 (72)
78 KOG0114 Predicted RNA-binding 99.3 8.2E-12 1.8E-16 99.7 8.7 78 327-406 17-95 (124)
79 KOG0107 Alternative splicing f 99.3 3.5E-12 7.6E-17 111.1 7.1 75 230-307 9-84 (195)
80 PLN03213 repressor of silencin 99.3 6.8E-12 1.5E-16 124.2 9.6 78 326-406 8-88 (759)
81 KOG4206 Spliceosomal protein s 99.3 1.8E-11 3.9E-16 111.1 11.3 149 130-306 10-220 (221)
82 PLN03213 repressor of silencin 99.3 7.8E-12 1.7E-16 123.7 9.0 76 230-307 9-87 (759)
83 KOG0111 Cyclophilin-type pepti 99.3 2.5E-12 5.3E-17 115.5 5.0 83 328-411 10-95 (298)
84 KOG1456 Heterogeneous nuclear 99.3 4.8E-10 1E-14 107.9 20.7 248 132-407 34-364 (494)
85 KOG0129 Predicted RNA-binding 99.3 6.3E-11 1.4E-15 118.6 14.7 171 227-403 255-451 (520)
86 KOG0149 Predicted RNA-binding 99.3 1.3E-11 2.9E-16 112.3 8.7 78 328-406 12-91 (247)
87 KOG0107 Alternative splicing f 99.3 1.4E-11 3E-16 107.4 8.0 77 328-408 10-87 (195)
88 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.4E-15 87.8 10.3 72 330-402 1-74 (74)
89 smart00360 RRM RNA recognition 99.2 5.7E-11 1.2E-15 88.6 8.5 68 333-401 1-71 (71)
90 KOG4207 Predicted splicing fac 99.2 2.5E-11 5.5E-16 108.3 7.3 81 327-408 12-95 (256)
91 KOG0130 RNA-binding protein RB 99.2 2.4E-11 5.1E-16 101.5 6.6 77 327-404 71-150 (170)
92 KOG0126 Predicted RNA-binding 99.2 1.9E-12 4.2E-17 113.2 0.1 80 228-307 32-114 (219)
93 KOG0128 RNA-binding protein SA 99.2 4.2E-12 9.1E-17 133.1 2.5 228 131-408 573-817 (881)
94 KOG0114 Predicted RNA-binding 99.2 5.8E-11 1.3E-15 94.8 8.2 77 228-305 15-92 (124)
95 KOG0126 Predicted RNA-binding 99.2 3.3E-12 7.2E-17 111.7 0.3 76 328-404 35-113 (219)
96 PF13893 RRM_5: RNA recognitio 99.2 1.3E-10 2.8E-15 84.6 8.5 55 345-403 1-56 (56)
97 KOG4207 Predicted splicing fac 99.2 3.3E-11 7.1E-16 107.5 6.3 80 229-308 11-93 (256)
98 smart00360 RRM RNA recognition 99.2 1.1E-10 2.5E-15 86.9 8.2 68 236-303 1-71 (71)
99 KOG0113 U1 small nuclear ribon 99.2 9.8E-11 2.1E-15 109.8 9.3 79 326-405 99-180 (335)
100 cd00590 RRM RRM (RNA recogniti 99.2 2.2E-10 4.7E-15 86.2 9.2 72 233-304 1-74 (74)
101 KOG0120 Splicing factor U2AF, 99.1 9.8E-11 2.1E-15 119.1 8.4 173 230-407 174-370 (500)
102 COG0724 RNA-binding proteins ( 99.1 2.2E-10 4.7E-15 108.1 10.2 77 328-405 115-194 (306)
103 KOG0111 Cyclophilin-type pepti 99.1 3.9E-11 8.5E-16 107.9 4.2 81 228-308 7-90 (298)
104 KOG0113 U1 small nuclear ribon 99.1 1.4E-10 3E-15 108.8 8.1 78 229-306 99-179 (335)
105 KOG0130 RNA-binding protein RB 99.1 1.7E-10 3.7E-15 96.4 5.7 76 231-306 72-150 (170)
106 KOG0108 mRNA cleavage and poly 99.1 2.4E-10 5.2E-15 115.6 7.9 79 329-408 19-100 (435)
107 KOG0106 Alternative splicing f 99.1 1.4E-10 2.9E-15 106.3 5.5 142 130-304 2-167 (216)
108 smart00361 RRM_1 RNA recogniti 99.1 6.7E-10 1.5E-14 84.7 8.4 59 342-401 2-70 (70)
109 PF13893 RRM_5: RNA recognitio 99.0 7E-10 1.5E-14 80.6 6.8 55 248-305 1-56 (56)
110 KOG0108 mRNA cleavage and poly 99.0 5.6E-10 1.2E-14 112.9 8.1 76 232-307 19-97 (435)
111 smart00361 RRM_1 RNA recogniti 99.0 2.2E-09 4.8E-14 81.8 7.6 58 245-302 2-69 (70)
112 KOG4454 RNA binding protein (R 98.9 3.3E-10 7.2E-15 102.0 0.2 136 229-392 7-149 (267)
113 KOG1457 RNA binding protein (c 98.9 1.4E-08 3E-13 91.9 9.8 61 233-295 212-273 (284)
114 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.5E-13 97.9 8.9 75 326-405 226-302 (377)
115 KOG4210 Nuclear localization s 98.8 5.9E-09 1.3E-13 100.8 6.0 176 230-409 87-267 (285)
116 KOG0112 Large RNA-binding prot 98.8 3.6E-09 7.8E-14 111.9 4.7 162 228-410 369-535 (975)
117 KOG0226 RNA-binding proteins [ 98.8 6.4E-09 1.4E-13 95.8 5.2 161 234-403 99-267 (290)
118 KOG4208 Nucleolar RNA-binding 98.8 1.5E-08 3.3E-13 90.8 7.4 79 328-406 49-130 (214)
119 KOG0129 Predicted RNA-binding 98.8 3.6E-08 7.9E-13 99.1 10.5 143 130-289 260-431 (520)
120 KOG0153 Predicted RNA-binding 98.7 2.6E-08 5.5E-13 95.6 7.2 76 228-307 225-302 (377)
121 KOG0112 Large RNA-binding prot 98.7 3.7E-08 8E-13 104.4 8.3 154 129-308 372-531 (975)
122 KOG0415 Predicted peptidyl pro 98.7 2.4E-08 5.2E-13 95.8 5.9 78 229-306 237-317 (479)
123 KOG0415 Predicted peptidyl pro 98.7 3.5E-08 7.5E-13 94.7 6.4 80 326-406 237-319 (479)
124 KOG0132 RNA polymerase II C-te 98.7 4.2E-08 9.2E-13 102.4 7.5 77 326-407 419-496 (894)
125 KOG4210 Nuclear localization s 98.6 6.6E-08 1.4E-12 93.6 7.6 159 129-306 88-262 (285)
126 KOG0132 RNA polymerase II C-te 98.6 6.9E-08 1.5E-12 100.9 7.5 74 229-306 419-493 (894)
127 KOG4208 Nucleolar RNA-binding 98.6 8.3E-08 1.8E-12 86.2 6.9 77 229-305 47-127 (214)
128 KOG4454 RNA binding protein (R 98.6 2.4E-08 5.2E-13 90.2 3.3 141 129-302 9-157 (267)
129 KOG1365 RNA-binding protein Fu 98.6 2.5E-07 5.5E-12 89.7 9.4 164 231-400 60-237 (508)
130 KOG0226 RNA-binding proteins [ 98.5 1E-07 2.2E-12 87.9 5.6 155 133-307 100-269 (290)
131 KOG4661 Hsp27-ERE-TATA-binding 98.5 2E-07 4.2E-12 94.3 7.9 82 326-408 403-487 (940)
132 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.7E-07 5.8E-12 93.4 7.4 79 230-308 404-485 (940)
133 KOG4660 Protein Mei2, essentia 98.5 1.7E-07 3.8E-12 95.0 6.1 176 222-406 66-250 (549)
134 KOG0533 RRM motif-containing p 98.5 5.3E-07 1.1E-11 84.6 8.8 81 328-409 83-165 (243)
135 KOG4676 Splicing factor, argin 98.4 1.2E-07 2.7E-12 92.1 2.9 169 232-403 8-223 (479)
136 KOG4209 Splicing factor RNPS1, 98.4 7.9E-07 1.7E-11 83.4 6.7 81 325-406 98-180 (231)
137 KOG0128 RNA-binding protein SA 98.4 1.4E-07 3.1E-12 99.7 1.8 140 131-305 669-812 (881)
138 KOG4307 RNA binding protein RB 98.3 1.1E-06 2.4E-11 90.9 7.8 173 229-403 309-511 (944)
139 KOG0151 Predicted splicing reg 98.3 1.4E-06 3.1E-11 90.4 7.4 82 228-309 171-258 (877)
140 KOG0116 RasGAP SH3 binding pro 98.3 1.7E-06 3.6E-11 87.4 7.4 80 328-408 288-369 (419)
141 KOG0151 Predicted splicing reg 98.3 2.6E-06 5.6E-11 88.5 8.8 84 324-408 170-259 (877)
142 KOG4209 Splicing factor RNPS1, 98.3 1.3E-06 2.8E-11 82.0 6.0 83 226-308 96-180 (231)
143 KOG0116 RasGAP SH3 binding pro 98.2 1.5E-06 3.2E-11 87.8 6.2 77 231-307 288-366 (419)
144 KOG0533 RRM motif-containing p 98.2 3.2E-06 6.9E-11 79.4 8.0 78 229-306 81-160 (243)
145 KOG1548 Transcription elongati 98.2 3.3E-06 7.1E-11 81.3 7.8 78 328-406 134-221 (382)
146 PF04059 RRM_2: RNA recognitio 98.2 1.6E-05 3.5E-10 64.2 9.3 78 329-406 2-87 (97)
147 KOG4660 Protein Mei2, essentia 98.1 2.3E-06 5.1E-11 87.0 5.1 75 321-399 68-143 (549)
148 KOG2193 IGF-II mRNA-binding pr 98.1 2.5E-07 5.4E-12 90.7 -1.8 149 232-403 2-154 (584)
149 PF11608 Limkain-b1: Limkain b 98.0 2.4E-05 5.2E-10 60.7 7.6 67 329-404 3-75 (90)
150 PF04059 RRM_2: RNA recognitio 97.9 6.7E-05 1.4E-09 60.7 8.9 75 232-306 2-85 (97)
151 PF08777 RRM_3: RNA binding mo 97.6 0.0002 4.4E-09 59.0 7.1 68 329-401 2-75 (105)
152 PF11608 Limkain-b1: Limkain b 97.6 0.00026 5.7E-09 55.0 6.6 67 232-306 3-75 (90)
153 PF08777 RRM_3: RNA binding mo 97.4 0.0006 1.3E-08 56.2 7.4 54 232-289 2-55 (105)
154 KOG4307 RNA binding protein RB 97.2 0.00084 1.8E-08 70.2 7.8 74 328-402 867-943 (944)
155 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0022 4.9E-08 52.2 8.6 77 328-406 6-92 (100)
156 COG5175 MOT2 Transcriptional r 97.2 0.00079 1.7E-08 64.9 6.4 76 329-405 115-202 (480)
157 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00099 2.1E-08 47.8 5.5 52 232-288 2-53 (53)
158 KOG1995 Conserved Zn-finger pr 97.2 0.00036 7.7E-09 68.0 4.1 79 327-406 65-154 (351)
159 KOG1995 Conserved Zn-finger pr 97.1 0.00052 1.1E-08 66.9 4.3 79 228-306 63-152 (351)
160 KOG2193 IGF-II mRNA-binding pr 97.0 7.6E-05 1.7E-09 73.6 -2.3 145 131-305 3-154 (584)
161 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0031 6.8E-08 51.3 7.2 75 230-305 5-89 (100)
162 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0026 5.7E-08 45.6 5.7 52 329-386 2-53 (53)
163 KOG1855 Predicted RNA-binding 96.8 0.0028 6E-08 63.1 6.8 66 325-391 228-309 (484)
164 KOG0115 RNA-binding protein p5 96.8 0.0028 6.1E-08 59.2 6.2 100 283-404 6-112 (275)
165 COG5175 MOT2 Transcriptional r 96.7 0.0039 8.5E-08 60.2 6.3 76 232-307 115-202 (480)
166 KOG2314 Translation initiation 96.6 0.0035 7.7E-08 64.3 6.2 75 328-403 58-141 (698)
167 KOG1996 mRNA splicing factor [ 96.6 0.0062 1.4E-07 57.8 7.2 77 328-405 281-366 (378)
168 PF08952 DUF1866: Domain of un 96.5 0.0089 1.9E-07 51.7 7.0 56 344-406 52-107 (146)
169 KOG3152 TBP-binding protein, a 96.3 0.0029 6.3E-08 59.1 2.8 70 230-299 73-157 (278)
170 KOG4676 Splicing factor, argin 96.2 0.0076 1.7E-07 59.4 5.4 77 329-406 8-89 (479)
171 PF08952 DUF1866: Domain of un 96.1 0.017 3.8E-07 49.9 6.6 54 247-306 52-105 (146)
172 KOG2314 Translation initiation 96.0 0.016 3.5E-07 59.6 7.1 76 229-304 56-140 (698)
173 KOG4849 mRNA cleavage factor I 96.0 0.0061 1.3E-07 59.2 3.7 75 231-305 80-159 (498)
174 KOG3152 TBP-binding protein, a 95.9 0.0054 1.2E-07 57.3 2.6 70 327-397 73-157 (278)
175 KOG1855 Predicted RNA-binding 95.8 0.0095 2.1E-07 59.4 4.3 66 226-291 226-306 (484)
176 KOG2202 U2 snRNP splicing fact 95.8 0.0038 8.3E-08 58.4 1.5 62 343-405 83-147 (260)
177 KOG2202 U2 snRNP splicing fact 95.7 0.0053 1.2E-07 57.4 1.9 61 246-306 83-146 (260)
178 PF08675 RNA_bind: RNA binding 95.6 0.059 1.3E-06 42.1 6.8 55 230-291 8-63 (87)
179 KOG4849 mRNA cleavage factor I 95.1 0.02 4.2E-07 55.7 3.7 75 328-403 80-159 (498)
180 PF10309 DUF2414: Protein of u 94.5 0.19 4.2E-06 37.1 6.6 52 232-289 6-60 (62)
181 KOG2416 Acinus (induces apopto 94.2 0.035 7.6E-07 57.6 3.0 76 325-404 441-520 (718)
182 PF07576 BRAP2: BRCA1-associat 94.1 0.42 9.1E-06 39.6 8.8 67 329-395 14-81 (110)
183 PF15023 DUF4523: Protein of u 94.0 0.24 5.2E-06 42.6 7.2 75 325-406 83-162 (166)
184 PF10309 DUF2414: Protein of u 93.8 0.39 8.4E-06 35.5 7.1 53 329-387 6-60 (62)
185 KOG1996 mRNA splicing factor [ 93.6 0.17 3.7E-06 48.4 6.2 61 245-305 300-364 (378)
186 PF08675 RNA_bind: RNA binding 93.3 0.42 9.2E-06 37.4 6.9 53 329-389 10-63 (87)
187 PF04847 Calcipressin: Calcipr 93.2 0.29 6.4E-06 44.4 6.9 61 341-406 8-71 (184)
188 KOG2591 c-Mpl binding protein, 93.2 0.26 5.7E-06 51.0 7.2 69 329-402 176-248 (684)
189 KOG0115 RNA-binding protein p5 92.6 0.16 3.4E-06 47.8 4.3 74 232-305 32-111 (275)
190 KOG0804 Cytoplasmic Zn-finger 92.4 0.38 8.3E-06 48.7 7.0 68 328-395 74-142 (493)
191 KOG4285 Mitotic phosphoprotein 92.3 0.49 1.1E-05 45.5 7.3 69 328-402 197-266 (350)
192 PF07292 NID: Nmi/IFP 35 domai 91.8 0.15 3.2E-06 40.5 2.7 72 274-350 1-74 (88)
193 PF07576 BRAP2: BRCA1-associat 91.7 1.6 3.4E-05 36.2 8.9 64 234-297 16-81 (110)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 91.7 0.27 5.9E-06 44.3 4.7 78 328-405 7-97 (176)
195 KOG2416 Acinus (induces apopto 91.5 0.14 3E-06 53.3 3.0 72 230-305 443-519 (718)
196 PF15023 DUF4523: Protein of u 91.1 0.62 1.3E-05 40.1 5.9 73 228-305 83-159 (166)
197 PF11767 SET_assoc: Histone ly 90.9 1 2.2E-05 33.7 6.3 54 242-302 11-65 (66)
198 KOG4285 Mitotic phosphoprotein 90.9 0.38 8.3E-06 46.2 5.0 70 231-305 197-267 (350)
199 KOG2135 Proteins containing th 90.9 0.15 3.3E-06 51.7 2.4 73 330-407 374-447 (526)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 90.5 0.3 6.6E-06 44.0 3.8 67 230-296 6-81 (176)
201 KOG4574 RNA-binding protein (c 89.9 0.23 5E-06 53.7 2.9 76 331-411 301-379 (1007)
202 KOG2135 Proteins containing th 89.6 0.16 3.5E-06 51.5 1.4 73 231-307 372-445 (526)
203 KOG0804 Cytoplasmic Zn-finger 89.5 1.3 2.9E-05 44.9 7.7 68 230-297 73-142 (493)
204 KOG2068 MOT2 transcription fac 89.3 0.13 2.9E-06 50.1 0.6 77 329-406 78-163 (327)
205 KOG2068 MOT2 transcription fac 89.1 0.21 4.4E-06 48.8 1.7 76 231-306 77-161 (327)
206 KOG2591 c-Mpl binding protein, 88.2 1 2.2E-05 46.9 5.9 68 230-302 174-246 (684)
207 PF10567 Nab6_mRNP_bdg: RNA-re 88.1 16 0.00035 35.4 13.5 161 227-389 11-212 (309)
208 PF04847 Calcipressin: Calcipr 85.0 2.5 5.4E-05 38.4 6.2 59 244-306 8-69 (184)
209 PF03880 DbpA: DbpA RNA bindin 84.9 3.9 8.4E-05 31.1 6.4 58 339-403 12-74 (74)
210 PF14111 DUF4283: Domain of un 82.9 2.2 4.7E-05 36.9 4.8 121 242-374 28-150 (153)
211 KOG2253 U1 snRNP complex, subu 82.7 1.3 2.8E-05 47.1 3.7 68 327-402 39-107 (668)
212 KOG4574 RNA-binding protein (c 81.6 0.99 2.1E-05 49.1 2.5 72 232-307 299-373 (1007)
213 KOG2253 U1 snRNP complex, subu 80.9 1.6 3.5E-05 46.3 3.7 144 229-386 38-193 (668)
214 PF11767 SET_assoc: Histone ly 76.7 11 0.00023 28.3 6.0 54 339-400 11-65 (66)
215 PF03880 DbpA: DbpA RNA bindin 70.1 17 0.00037 27.5 6.0 58 241-305 11-74 (74)
216 KOG2318 Uncharacterized conser 68.8 25 0.00055 37.1 8.6 40 228-267 171-215 (650)
217 PRK14548 50S ribosomal protein 66.0 21 0.00047 28.0 5.8 57 330-387 22-79 (84)
218 TIGR03636 L23_arch archaeal ri 64.6 25 0.00055 27.1 5.9 56 330-386 15-71 (77)
219 PF03468 XS: XS domain; Inter 56.6 10 0.00022 31.7 2.7 47 243-290 29-76 (116)
220 KOG4483 Uncharacterized conser 49.9 34 0.00074 34.5 5.5 57 229-290 389-446 (528)
221 PF03468 XS: XS domain; Inter 45.4 36 0.00078 28.4 4.3 57 329-387 9-75 (116)
222 KOG4410 5-formyltetrahydrofola 45.3 24 0.00053 33.9 3.6 45 233-281 332-377 (396)
223 PF10567 Nab6_mRNP_bdg: RNA-re 42.2 46 0.00099 32.4 4.9 76 328-404 15-106 (309)
224 PF07292 NID: Nmi/IFP 35 domai 40.1 12 0.00025 29.8 0.5 26 228-253 49-74 (88)
225 PRK05738 rplW 50S ribosomal pr 36.8 61 0.0013 25.9 4.2 37 330-366 21-58 (92)
226 KOG4483 Uncharacterized conser 34.3 87 0.0019 31.8 5.6 65 328-398 391-456 (528)
227 PTZ00191 60S ribosomal protein 33.7 1.3E+02 0.0027 26.3 5.8 55 330-385 83-138 (145)
228 CHL00030 rpl23 ribosomal prote 32.8 75 0.0016 25.5 4.1 38 330-367 20-58 (93)
229 KOG4019 Calcineurin-mediated s 29.2 44 0.00095 30.2 2.4 74 329-407 11-91 (193)
230 KOG2740 Clathrin-associated pr 27.5 32 0.00069 34.4 1.3 41 2-48 242-282 (418)
231 PF09707 Cas_Cas2CT1978: CRISP 26.9 1.3E+02 0.0029 23.7 4.5 48 231-279 25-72 (86)
232 PF12743 ESR1_C: Oestrogen-typ 25.6 33 0.00071 23.4 0.7 14 30-44 20-33 (43)
233 PRK12280 rplW 50S ribosomal pr 25.3 1.1E+02 0.0024 27.0 4.2 37 330-366 23-60 (158)
234 PF15513 DUF4651: Domain of un 24.7 83 0.0018 23.2 2.7 19 246-264 9-27 (62)
235 PF07530 PRE_C2HC: Associated 22.8 2E+02 0.0043 21.5 4.6 61 343-406 2-65 (68)
236 PF13046 DUF3906: Protein of u 22.3 87 0.0019 23.2 2.4 34 243-276 30-63 (64)
237 PF14893 PNMA: PNMA 21.3 73 0.0016 31.7 2.5 48 230-280 17-71 (331)
238 KOG1295 Nonsense-mediated deca 21.1 1.1E+02 0.0023 30.9 3.6 65 329-393 8-77 (376)
239 KOG4365 Uncharacterized conser 20.9 14 0.00031 37.6 -2.5 77 329-407 4-83 (572)
240 PF02714 DUF221: Domain of unk 20.5 1.8E+02 0.0038 28.4 5.1 55 274-350 1-56 (325)
241 KOG1295 Nonsense-mediated deca 20.3 1.1E+02 0.0024 30.8 3.5 66 230-295 6-77 (376)
242 PF01282 Ribosomal_S24e: Ribos 20.3 2.5E+02 0.0054 21.9 4.9 45 338-383 11-61 (84)
243 KOG3424 40S ribosomal protein 20.1 1.7E+02 0.0038 24.5 4.0 44 339-383 34-83 (132)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.2e-42 Score=343.82 Aligned_cols=255 Identities=18% Similarity=0.251 Sum_probs=209.1
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
..+||||||++++| |+++|++||+|.+|++++|+.+++ ++|||||+ |.+.+ +| .+|++.
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~----------s~g~afV~-f~~~~-------~A-~~Ai~~ 64 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQ----------SLGYGFVN-YVRPE-------DA-EKAVNS 64 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCc----------cceEEEEE-ECcHH-------HH-HHHHhh
Confidence 35899999999988 999999999999999999999999 99999999 99998 88 899987
Q ss_pred cccCC--Cccccccccch--hhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCH
Q 014866 208 KSFGQ--GKRRMNSRTSL--AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDE 281 (417)
Q Consensus 208 ~~~~~--gk~~~~~r~~~--~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~ 281 (417)
++... |+. +++.. +........+|||+|||..+++++|+++|++||.|..++++.+.. .++|||||+|.+.
T Consensus 65 l~g~~l~g~~---i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 65 LNGLRLQNKT---IKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred cccEEECCee---EEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 76543 665 33333 233334567899999999999999999999999999999998764 4799999999999
Q ss_pred HHHHHHHH-hcCcccCC--cceEEccCCCCCCCCCC------------C------------------------C------
Q 014866 282 EGARAALN-LAGTMLGF--YPVRVLPSKTAIAPVNP------------T------------------------F------ 316 (417)
Q Consensus 282 e~A~~Al~-lng~~i~g--~~l~V~~s~~~~~~~~~------------~------------------------~------ 316 (417)
++|..|++ |||..+.| .+|.|.++......... . +
T Consensus 142 ~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGD 221 (352)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcch
Confidence 99999998 99999877 57888776432100000 0 0
Q ss_pred -----------------------CCCCch-------------hhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEE
Q 014866 317 -----------------------LPRTED-------------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 360 (417)
Q Consensus 317 -----------------------~~~~~~-------------~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~ 360 (417)
.+.... .....+.+|||+|||+.+++++|+++|++ ||.|.+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~ 300 (352)
T TIGR01661 222 FTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVK 300 (352)
T ss_pred hhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEE
Confidence 000000 00111347999999999999999999999 59999999
Q ss_pred EeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 361 LLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 361 i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
|++|. +.++|||||+|.+.++|.+|+. |||..|+|+.|+|.|+....
T Consensus 301 i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 301 IIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99986 7899999999999999999999 99999999999999987653
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.6e-39 Score=337.94 Aligned_cols=245 Identities=23% Similarity=0.329 Sum_probs=214.1
Q ss_pred CCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhc
Q 014866 131 SNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKK 208 (417)
Q Consensus 131 ~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~ 208 (417)
++||||||++++| |+++|++||+|.+|+|++|..|++ ++|||||+ |.+.+ +| ++|++.+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~----------s~G~afV~-F~~~~-------~A-~~Al~~l 62 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRR----------SLGYGYVN-FQNPA-------DA-ERALETM 62 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC----------cceEEEEE-ECCHH-------HH-HHHHHHh
Confidence 6899999999988 999999999999999999999999 99999999 99999 89 9999988
Q ss_pred ccCC--CccccccccchhhccC----CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCH
Q 014866 209 SFGQ--GKRRMNSRTSLAQREE----IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDE 281 (417)
Q Consensus 209 ~~~~--gk~~~~~r~~~~~~~~----~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~ 281 (417)
++.. |++ +++.+..+++ ....+|||+|||.++++++|+++|+.||.|.+|++..+.. .++|||||+|.+.
T Consensus 63 n~~~i~gk~---i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~ 139 (562)
T TIGR01628 63 NFKRLGGKP---IRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKE 139 (562)
T ss_pred CCCEECCee---EEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCH
Confidence 8763 777 6666654433 2345799999999999999999999999999999998865 4799999999999
Q ss_pred HHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEE
Q 014866 282 EGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 360 (417)
Q Consensus 282 e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~ 360 (417)
++|.+|++ +||..+.|+.|.|.......... .......++|||+|||.++|+++|+++|++ ||.|.++.
T Consensus 140 e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~-fG~i~~~~ 209 (562)
T TIGR01628 140 ESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---------AAPLKKFTNLYVKNLDPSVNEDKLRELFAK-FGEITSAA 209 (562)
T ss_pred HHHHHHHHHhcccEecCceEEEeccccccccc---------cccccCCCeEEEeCCCCcCCHHHHHHHHHh-cCCEEEEE
Confidence 99999998 99999999999997653221110 112233578999999999999999999999 59999999
Q ss_pred EeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeC----CeeeEEeecCCCC
Q 014866 361 LLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLG----SLPIRVSPSKTPV 407 (417)
Q Consensus 361 i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~----G~~l~V~~a~~~~ 407 (417)
+.++. +.++|||||+|.+.++|.+|++ |||..+. |+.|.|.+++...
T Consensus 210 i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 210 VMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred EEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 99886 7899999999999999999999 9999999 9999999987654
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.2e-38 Score=284.09 Aligned_cols=252 Identities=19% Similarity=0.257 Sum_probs=210.8
Q ss_pred CCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhcc
Q 014866 132 NGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 209 (417)
Q Consensus 132 ~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~~ 209 (417)
+-|..||..||+ |+.+|+.+|+|++|+++||+.++. |+|||||+ |.++. || ++|+..+|
T Consensus 44 LIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq----------SLGYGFVN-Yv~p~-------DA-e~AintlN 104 (360)
T KOG0145|consen 44 LIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ----------SLGYGFVN-YVRPK-------DA-EKAINTLN 104 (360)
T ss_pred eeeeecccccCHHHHHHHhhcccceeeeeeeecccccc----------ccccceee-ecChH-------HH-HHHHhhhc
Confidence 558889999977 999999999999999999999999 99999999 99999 99 99998887
Q ss_pred cCC--Cccccccccchh--hccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHH
Q 014866 210 FGQ--GKRRMNSRTSLA--QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEG 283 (417)
Q Consensus 210 ~~~--gk~~~~~r~~~~--~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~ 283 (417)
... .+. ++++.+ ..+......|||.+||..+|..+|+.+|++||.|..-+|.-|..+ ++|.|||.|...++
T Consensus 105 GLrLQ~KT---IKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 105 GLRLQNKT---IKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred ceeeccce---EEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 642 454 444443 334456678999999999999999999999999998888888764 79999999999999
Q ss_pred HHHHHH-hcCcccCC--cceEEccCCCCCCCCC----------C----------------------------CCCCCCch
Q 014866 284 ARAALN-LAGTMLGF--YPVRVLPSKTAIAPVN----------P----------------------------TFLPRTED 322 (417)
Q Consensus 284 A~~Al~-lng~~i~g--~~l~V~~s~~~~~~~~----------~----------------------------~~~~~~~~ 322 (417)
|+.||+ |||+.-.| .+|.|+++........ | .|.|...+
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d 261 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTID 261 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccc
Confidence 999999 99998765 4899998754211100 0 01111111
Q ss_pred -----------hhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-h
Q 014866 323 -----------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-C 388 (417)
Q Consensus 323 -----------~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-l 388 (417)
.......+|||.||.++.+|.-||++|++| |.|..|++++|. ++++|||||.+.+.++|..|+. |
T Consensus 262 ~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF-GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sL 340 (360)
T KOG0145|consen 262 GMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF-GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 340 (360)
T ss_pred ccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc-cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHh
Confidence 012346899999999999999999999995 999999999998 6899999999999999999999 9
Q ss_pred CCceeCCeeeEEeecCCC
Q 014866 389 SGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 389 ng~~l~G~~l~V~~a~~~ 406 (417)
||..+++|.|.|.|....
T Consensus 341 NGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 341 NGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCccccceEEEEEEecCC
Confidence 999999999999997543
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.2e-38 Score=302.78 Aligned_cols=241 Identities=22% Similarity=0.284 Sum_probs=206.7
Q ss_pred CCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhc
Q 014866 131 SNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKK 208 (417)
Q Consensus 131 ~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~ 208 (417)
.+|||.||.++.| |..+|++.|+|.++|||.|+.++. ++|||||+ |.+.+ +| +.|++.+
T Consensus 85 EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~----------nRGYAFVt-f~~Ke-------~A-q~Aik~l 145 (506)
T KOG0117|consen 85 EVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD----------NRGYAFVT-FCTKE-------EA-QEAIKEL 145 (506)
T ss_pred eEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC----------CcceEEEE-eecHH-------HH-HHHHHHh
Confidence 4899999999977 999999999999999999999999 99999999 99998 88 7777766
Q ss_pred ccC---CCccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCC-CeeEEEEecCC---CCCceEEEEEecCH
Q 014866 209 SFG---QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDP---NSVLRFAFIEFTDE 281 (417)
Q Consensus 209 ~~~---~gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~---~~skG~aFV~F~~~ 281 (417)
|.. .||. +.++.+ ...+.|||||||.++++++|.+.|++.+ -|++|.+...+ .++||||||+|.++
T Consensus 146 nn~Eir~GK~---igvc~S----van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H 218 (506)
T KOG0117|consen 146 NNYEIRPGKL---LGVCVS----VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESH 218 (506)
T ss_pred hCccccCCCE---eEEEEe----eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecc
Confidence 553 4777 554433 4678899999999999999999999988 57778777654 35799999999999
Q ss_pred HHHHHHHH--hcCcc-cCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEE
Q 014866 282 EGARAALN--LAGTM-LGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR 358 (417)
Q Consensus 282 e~A~~Al~--lng~~-i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~ 358 (417)
..|..|.. ++|.. +.|+.+.|.|+.+...+.. +....-+.|||+||+.++|++.|+++|+.| |.|+.
T Consensus 219 ~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~de---------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~-G~veR 288 (506)
T KOG0117|consen 219 RAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDE---------DTMSKVKVLYVRNLMESTTEETLKKLFNEF-GKVER 288 (506)
T ss_pred hhHHHHHhhccCCceeecCCcceeeccCcccCCCh---------hhhhheeeeeeeccchhhhHHHHHHHHHhc-cceEE
Confidence 99999986 66654 7899999999865432211 123345789999999999999999999995 99999
Q ss_pred EEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCCCC
Q 014866 359 LRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRAPR 413 (417)
Q Consensus 359 v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~~~~r 413 (417)
|+.++| ||||.|.+.++|.+||+ +||++|.|..|.|.+|+|+...+..|
T Consensus 289 Vkk~rD------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 289 VKKPRD------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred eecccc------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 999877 99999999999999999 99999999999999999998766655
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.7e-36 Score=318.24 Aligned_cols=257 Identities=21% Similarity=0.284 Sum_probs=207.4
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
...+||+|||.++++ |+++|+.||.|.+|+++.|. ++. ++|||||. |.+.+ +| ..|++
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~----------skg~afV~-F~~~e-------~A-~~Ai~ 147 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGK----------SRGYGFVH-FEKEE-------SA-KAAIQ 147 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCC----------cccEEEEE-ECCHH-------HH-HHHHH
Confidence 456899999999988 99999999999999999886 455 89999999 99998 88 88888
Q ss_pred hcccCC--Cccccccc-cchhhc---cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEec
Q 014866 207 KKSFGQ--GKRRMNSR-TSLAQR---EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFT 279 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r-~~~~~~---~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~ 279 (417)
.++... |+...... .....+ .....++|||+|||.++|+++|+++|+.||.|.++.++.+.. .++|||||.|.
T Consensus 148 ~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~ 227 (562)
T TIGR01628 148 KVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFE 227 (562)
T ss_pred HhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC
Confidence 776543 44311000 011111 223456899999999999999999999999999999998865 46899999999
Q ss_pred CHHHHHHHHH-hcCcccC----CcceEEccCCCCCCCCCC---CCCC-CCchhhccccceEEEeCCCCCCCHHHHHHHHh
Q 014866 280 DEEGARAALN-LAGTMLG----FYPVRVLPSKTAIAPVNP---TFLP-RTEDEREMCARTIYCTNIDKKVTQADVKLFFE 350 (417)
Q Consensus 280 ~~e~A~~Al~-lng~~i~----g~~l~V~~s~~~~~~~~~---~~~~-~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~ 350 (417)
+.++|.+|++ ++|..+. |+.|.|.++......... .+.. ...........+|||+||+..+++++|+++|+
T Consensus 228 ~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 228 KHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred CHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 9999999998 9999999 999999886432111000 0000 00001123457899999999999999999999
Q ss_pred hcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 351 SVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 351 ~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
+ ||.|.+|+++.+. +.++|||||+|.+.++|.+|+. |||..++|++|.|.++...
T Consensus 308 ~-~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 308 E-CGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred h-cCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 9 5999999999987 7899999999999999999998 9999999999999999764
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.5e-36 Score=310.63 Aligned_cols=237 Identities=20% Similarity=0.211 Sum_probs=195.0
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
.++||||||++++| |+++|++||+|.+|+|++| .+++ ++|||||+ |.+.+ +| +.|++.
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~----------sRGfaFV~-F~~~e-------~A-~~Ai~~ 118 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ----------NRGYAFVT-FCGKE-------EA-KEAVKL 118 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC----------ccceEEEE-eCCHH-------HH-HHHHHH
Confidence 57999999999988 9999999999999999999 7788 99999999 99998 88 899988
Q ss_pred cccCC---CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC-eeEEEEecC---CCCCceEEEEEecC
Q 014866 208 KSFGQ---GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGD---PNSVLRFAFIEFTD 280 (417)
Q Consensus 208 ~~~~~---gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d---~~~skG~aFV~F~~ 280 (417)
++... |+. +.+.. ....++|||+|||.++++++|.+.|++++. +.++.+... ...++|||||+|.+
T Consensus 119 lng~~i~~Gr~---l~V~~----S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s 191 (578)
T TIGR01648 119 LNNYEIRPGRL---LGVCI----SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYES 191 (578)
T ss_pred cCCCeecCCcc---ccccc----cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCC
Confidence 76532 443 22222 234688999999999999999999999863 555544432 23478999999999
Q ss_pred HHHHHHHHH-hcC--cccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcC--Cc
Q 014866 281 EEGARAALN-LAG--TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC--GE 355 (417)
Q Consensus 281 ~e~A~~Al~-lng--~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~--G~ 355 (417)
+++|..|+. |+. ..+.|+.|.|.|+....... .......++|||+|||.++++++|+++|++ | |.
T Consensus 192 ~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d---------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~ 261 (578)
T TIGR01648 192 HRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD---------EDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGK 261 (578)
T ss_pred HHHHHHHHHHhhccceEecCceEEEEeeccccccc---------ccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCc
Confidence 999999997 643 35789999999975432111 111123478999999999999999999999 8 99
Q ss_pred eEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCC
Q 014866 356 VYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRP 409 (417)
Q Consensus 356 I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~ 409 (417)
|++|.+++ +||||+|.+.++|.+|++ |||..|.|+.|+|.|++++...
T Consensus 262 I~rV~~~r------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 262 VERVKKIR------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred eEEEEeec------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 99998764 499999999999999998 9999999999999999887544
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-34 Score=265.00 Aligned_cols=230 Identities=24% Similarity=0.338 Sum_probs=186.3
Q ss_pred CCCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHH
Q 014866 127 NNQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV 204 (417)
Q Consensus 127 ~~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a 204 (417)
..+|+||||||+.+++| |..||+++|+|.+++|+.|-..=. ++. + .
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~-------------wa~----------------~-p-- 51 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVN-------------WAT----------------A-P-- 51 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccc-------------ccc----------------C-c--
Confidence 35799999999999999 999999999999999998721110 000 1 0
Q ss_pred HhhcccCCCccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHH
Q 014866 205 RRKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEE 282 (417)
Q Consensus 205 ~~~~~~~~gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e 282 (417)
+. +.++ .....-.+||+.|...++.++|++.|.+||+|.+++|++|..+ ++|||||.|-+.+
T Consensus 52 ----~n-Qsk~-----------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 52 ----GN-QSKP-----------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred ----cc-CCCC-----------ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 00 0011 1112456999999999999999999999999999999999874 7999999999999
Q ss_pred HHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCch----hhccccceEEEeCCCCCCCHHHHHHHHhhcCCceE
Q 014866 283 GARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED----EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVY 357 (417)
Q Consensus 283 ~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~ 357 (417)
+|+.||. |||+.|++|.|+-.|+.......+. .+..-+ ...+..++|||+|++..++|++|++.|++| |.|.
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~--~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f-G~I~ 192 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKPSEMNG--KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF-GPIQ 192 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCccccCC--CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC-Ccce
Confidence 9999998 9999999999999998544322111 111111 123456899999999999999999999995 9999
Q ss_pred EEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCC
Q 014866 358 RLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRA 411 (417)
Q Consensus 358 ~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~~~ 411 (417)
.|++.++.| ||||.|++.|+|.+||. ||+.+++|+.+++.|.+.......
T Consensus 193 EVRvFk~qG----YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 193 EVRVFKDQG----YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred EEEEecccc----eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 999998855 99999999999999998 999999999999999988765443
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.2e-34 Score=295.91 Aligned_cols=244 Identities=20% Similarity=0.204 Sum_probs=191.5
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.|.+||||||++++| |+++|++||+|.+|++++ ++|||||+ |.+.+ +| ..|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----------------~k~~afVe-f~~~e-------~A-~~Ai~ 56 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----------------GKRQALVE-FEDEE-------SA-KACVN 56 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----------------CCCEEEEE-eCchH-------HH-HHHHH
Confidence 367899999999988 999999999999999886 55899999 99998 88 88887
Q ss_pred hcc--cC--CCccccccccchhhc-----c---------CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC
Q 014866 207 KKS--FG--QGKRRMNSRTSLAQR-----E---------EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN 268 (417)
Q Consensus 207 ~~~--~~--~gk~~~~~r~~~~~~-----~---------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 268 (417)
.++ .. .|++ +++.++.. . .....+|||+||++.+|+++|+++|+.||.|.+|.+.++..
T Consensus 57 ~~~~~~~~l~g~~---l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~ 133 (481)
T TIGR01649 57 FATSVPIYIRGQP---AFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN 133 (481)
T ss_pred HhhcCCceEcCeE---EEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 542 21 2655 33332211 0 11223699999999999999999999999999999987654
Q ss_pred CCceEEEEEecCHHHHHHHHH-hcCcccCC--cceEEccCCCCCCC------CC-----CCC---------------CC-
Q 014866 269 SVLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSKTAIAP------VN-----PTF---------------LP- 318 (417)
Q Consensus 269 ~skG~aFV~F~~~e~A~~Al~-lng~~i~g--~~l~V~~s~~~~~~------~~-----~~~---------------~~- 318 (417)
+|+|||+|.+.++|.+|++ |||..|.| +.|+|.+++..... .. +.. .+
T Consensus 134 --~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~ 211 (481)
T TIGR01649 134 --VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPA 211 (481)
T ss_pred --ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccc
Confidence 4799999999999999998 99999854 57888887531100 00 000 00
Q ss_pred -------------------------------------CC-----------------chhhccccceEEEeCCCC-CCCHH
Q 014866 319 -------------------------------------RT-----------------EDEREMCARTIYCTNIDK-KVTQA 343 (417)
Q Consensus 319 -------------------------------------~~-----------------~~~~~~~~~~l~V~nLp~-~~te~ 343 (417)
.. ......++.+|||+|||. .+|++
T Consensus 212 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~ 291 (481)
T TIGR01649 212 LLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCD 291 (481)
T ss_pred cccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHH
Confidence 00 000022467999999998 69999
Q ss_pred HHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 344 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 344 dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
+|+++|+. ||.|.+|+++++. +|||||+|.+.++|..|+. |||..|.|++|+|.+++..
T Consensus 292 ~L~~lF~~-yG~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 292 RLFNLFCV-YGNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHHh-cCCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 99999999 6999999998863 6799999999999999998 9999999999999998654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.3e-34 Score=296.05 Aligned_cols=256 Identities=20% Similarity=0.248 Sum_probs=201.8
Q ss_pred CCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHH
Q 014866 128 NQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVR 205 (417)
Q Consensus 128 ~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~ 205 (417)
..+++||+|||+++++ |+++|++||+|.+|+++.|+.+++ ++|||||+ |.+.+ +| .+|+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~----------skg~afVe-F~~~e-------~A-~~Al 148 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRR----------SKGVAYVE-FYDVE-------SV-IKAL 148 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC----------cceEEEEE-ECCHH-------HH-HHHH
Confidence 4578999999999988 999999999999999999999999 99999999 99998 88 8888
Q ss_pred hhcccCC-Cccccccccchhh------------ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CC
Q 014866 206 RKKSFGQ-GKRRMNSRTSLAQ------------REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SV 270 (417)
Q Consensus 206 ~~~~~~~-gk~~~~~r~~~~~------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~s 270 (417)
...+... |++ +.+...... ......++|||+|||..+|+++|+++|+.||.|..|.++.+.. .+
T Consensus 149 ~l~g~~~~g~~-i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~ 227 (457)
T TIGR01622 149 ALTGQMLLGRP-IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRS 227 (457)
T ss_pred HhCCCEECCee-eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCcc
Confidence 7655433 544 111111110 0012257899999999999999999999999999999998875 36
Q ss_pred ceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCC-------------------------------------
Q 014866 271 LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPV------------------------------------- 312 (417)
Q Consensus 271 kG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~------------------------------------- 312 (417)
+|||||+|.+.++|.+|+. |||..+.|++|.|.++.......
T Consensus 228 ~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (457)
T TIGR01622 228 KGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGD 307 (457)
T ss_pred ceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCC
Confidence 9999999999999999998 99999999999999953210000
Q ss_pred -------CCC----------------CCC--------------CCc--hhhccccceEEEeCCCCCCC----------HH
Q 014866 313 -------NPT----------------FLP--------------RTE--DEREMCARTIYCTNIDKKVT----------QA 343 (417)
Q Consensus 313 -------~~~----------------~~~--------------~~~--~~~~~~~~~l~V~nLp~~~t----------e~ 343 (417)
... ..+ ... .......++|+|.||....+ .+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~ 387 (457)
T TIGR01622 308 GGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILD 387 (457)
T ss_pred ccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHH
Confidence 000 000 000 00123568899999955443 36
Q ss_pred HHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 344 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 344 dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
||++.|++ ||.|..|.|... ...|++||+|.+.++|.+|++ |||..|+|+.|.+.+....
T Consensus 388 dv~~e~~k-~G~v~~v~v~~~--~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 388 DVKEECSK-YGGVVHIYVDTK--NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHh-cCCeeEEEEeCC--CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 89999999 599999998643 457899999999999999999 9999999999999997543
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.3e-33 Score=289.02 Aligned_cols=250 Identities=20% Similarity=0.186 Sum_probs=194.8
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
..++|+||++++++ |+++|+.||+|.+|.++++. ..|+|||+ |.+.+ +| .+|++.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~--------------~~~~afVe-f~~~~-------~A-~~A~~~ 153 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN--------------NVFQALVE-FESVN-------SA-QHAKAA 153 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC--------------CceEEEEE-ECCHH-------HH-HHHHHH
Confidence 35789999998877 99999999999999998754 33679999 99998 88 888876
Q ss_pred cccCC--Cc-c----------cccccc--ch-------------------------h-----------------------
Q 014866 208 KSFGQ--GK-R----------RMNSRT--SL-------------------------A----------------------- 224 (417)
Q Consensus 208 ~~~~~--gk-~----------~~~~r~--~~-------------------------~----------------------- 224 (417)
++... |+ . .+++.. .. .
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 65432 21 0 010000 00 0
Q ss_pred -----------------------------------hccCCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCeeEEEEecCCC
Q 014866 225 -----------------------------------QREEIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPN 268 (417)
Q Consensus 225 -----------------------------------~~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~ 268 (417)
.......++|||+|||+ .+|+++|+++|+.||.|.+|+++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~- 312 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK- 312 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-
Confidence 00012346899999998 69999999999999999999999874
Q ss_pred CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCC------------CCC----CC--ch-----hh
Q 014866 269 SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPT------------FLP----RT--ED-----ER 324 (417)
Q Consensus 269 ~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~------------~~~----~~--~~-----~~ 324 (417)
+|||||+|.+.++|..|+. |||..|.|++|+|.+++......... +.. +. .. ..
T Consensus 313 --~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~ 390 (481)
T TIGR01649 313 --KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNI 390 (481)
T ss_pred --CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCccccccccc
Confidence 4899999999999999998 99999999999999886432111100 000 00 00 00
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCc--eEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCee----
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP---- 397 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~--I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~---- 397 (417)
..++.+|||+|||.++++++|+++|+. ||. |..+++....+..+|+|||+|.+.++|.+|+. |||+.|.|+.
T Consensus 391 ~~ps~~L~v~NLp~~~tee~L~~lF~~-~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~ 469 (481)
T TIGR01649 391 QPPSATLHLSNIPLSVSEEDLKELFAE-NGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAP 469 (481)
T ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHh-cCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCcc
Confidence 235679999999999999999999999 597 89999887665568999999999999999999 9999999985
Q ss_pred --eEEeecCCC
Q 014866 398 --IRVSPSKTP 406 (417)
Q Consensus 398 --l~V~~a~~~ 406 (417)
|+|.|+++.
T Consensus 470 ~~lkv~fs~~~ 480 (481)
T TIGR01649 470 YHLKVSFSTSR 480 (481)
T ss_pred ceEEEEeccCC
Confidence 999999875
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=6.2e-33 Score=290.19 Aligned_cols=251 Identities=16% Similarity=0.152 Sum_probs=188.3
Q ss_pred CCCCCCCCCCCcChHH--HHHHHhhcC------------CccEEEccCCCCccccCCCCCCCCCCccccccccccCcccc
Q 014866 128 NQRSNGGGDFKRDMRE--LQELFSKLN------------PMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNA 193 (417)
Q Consensus 128 ~~r~~~VgnLp~~~~e--L~e~F~~~G------------~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~ 193 (417)
..|++||||||+++++ |.++|.+++ +|..+.+ .. .+|||||+ |.+.+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~----------~kg~afVe-F~~~e-- 234 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NK----------EKNFAFLE-FRTVE-- 234 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CC----------CCCEEEEE-eCCHH--
Confidence 4588999999999988 999999862 3333332 33 77999999 99998
Q ss_pred cCCccchhHHHHhhcccCC-Cccccccccc--h---------------------------hhccCCCCcEEEEcCCCCCC
Q 014866 194 RNGNVNANAAVRRKKSFGQ-GKRRMNSRTS--L---------------------------AQREEIIRRTVYVSDIDQQV 243 (417)
Q Consensus 194 ~~~~~~A~~~a~~~~~~~~-gk~~~~~r~~--~---------------------------~~~~~~~~~~lfV~nLp~~~ 243 (417)
+| ..|+...+... |++ +.+... . ........++|||+|||..+
T Consensus 235 -----~A-~~Al~l~g~~~~g~~-l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 307 (509)
T TIGR01642 235 -----EA-TFAMALDSIIYSNVF-LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYL 307 (509)
T ss_pred -----HH-hhhhcCCCeEeeCce-eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 88 88885433322 333 111100 0 00011235789999999999
Q ss_pred cHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCC----
Q 014866 244 TEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTF---- 316 (417)
Q Consensus 244 te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~---- 316 (417)
|+++|+++|+.||.|..+.++.+.. .++|||||+|.+.++|..|+. |||..|+|+.|.|.++...........
T Consensus 308 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~ 387 (509)
T TIGR01642 308 GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM 387 (509)
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc
Confidence 9999999999999999999998864 369999999999999999998 999999999999999753321111000
Q ss_pred -----CCCC-----chhhccccceEEEeCCCCC--C--------CHHHHHHHHhhcCCceEEEEEeccC-----CCCceE
Q 014866 317 -----LPRT-----EDEREMCARTIYCTNIDKK--V--------TQADVKLFFESVCGEVYRLRLLGDY-----HHSTRI 371 (417)
Q Consensus 317 -----~~~~-----~~~~~~~~~~l~V~nLp~~--~--------te~dL~~~F~~f~G~I~~v~i~~d~-----~~~kG~ 371 (417)
.+.. ......++.+|+|.||... + ..++|+++|++ ||.|..|.|+++. +.+.|+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~i~~~~~~~~~~~~~G~ 466 (509)
T TIGR01642 388 APVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIVIPRPNGDRNSTPGVGK 466 (509)
T ss_pred cccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEEeeccCcCCCcCCCcce
Confidence 0000 0011235688999999642 1 23689999999 5999999998752 345789
Q ss_pred EEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 372 AFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 372 aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
|||+|.+.++|.+|+. |||..|+|+.|.|.|...
T Consensus 467 ~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 467 VFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999999999999999 999999999999999754
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=271.56 Aligned_cols=261 Identities=22% Similarity=0.294 Sum_probs=212.9
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
-.+|||-+|++++| |+++|++||.|.+|.|++|+.|+. ++|||||. |.+.+ +| .+|+.+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~----------s~gcCFv~-~~trk-------~a-~~a~~A 95 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQ----------SKGCCFVK-YYTRK-------EA-DEAINA 95 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCc----------ccceEEEE-eccHH-------HH-HHHHHH
Confidence 56899999999988 999999999999999999999999 99999999 99998 77 666665
Q ss_pred cccC---CCcc-ccccccchhhccC-CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCH
Q 014866 208 KSFG---QGKR-RMNSRTSLAQREE-IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDE 281 (417)
Q Consensus 208 ~~~~---~gk~-~~~~r~~~~~~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~ 281 (417)
+... +|.. .+.++..+.+++. .+.++||||-|+..+||.+++++|++||.|++|+|.+|.. .+||||||.|.+.
T Consensus 96 lhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 96 LHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred hhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 5332 2433 4455555554433 3578999999999999999999999999999999999886 5899999999999
Q ss_pred HHHHHHHH-hcCcc-cCC--cceEEccCCCCCCC----------------------------------------------
Q 014866 282 EGARAALN-LAGTM-LGF--YPVRVLPSKTAIAP---------------------------------------------- 311 (417)
Q Consensus 282 e~A~~Al~-lng~~-i~g--~~l~V~~s~~~~~~---------------------------------------------- 311 (417)
+.|..||+ |||.. +.| .+|.|+|+.+....
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sq 255 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQ 255 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccC
Confidence 99999999 99965 655 58999987540000
Q ss_pred -----------------------------------------------CC------C---------C--------------
Q 014866 312 -----------------------------------------------VN------P---------T-------------- 315 (417)
Q Consensus 312 -----------------------------------------------~~------~---------~-------------- 315 (417)
.+ + .
T Consensus 256 n~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~ 335 (510)
T KOG0144|consen 256 NVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGAR 335 (510)
T ss_pred CCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHh
Confidence 00 0 0
Q ss_pred --C----------------------------------CCCC---------------------------------------
Q 014866 316 --F----------------------------------LPRT--------------------------------------- 320 (417)
Q Consensus 316 --~----------------------------------~~~~--------------------------------------- 320 (417)
+ .+..
T Consensus 336 q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~ 415 (510)
T KOG0144|consen 336 QTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVG 415 (510)
T ss_pred hcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhccc
Confidence 0 0000
Q ss_pred -chhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 014866 321 -EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL 396 (417)
Q Consensus 321 -~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~ 396 (417)
.....+.+..|||.+||.+.-+.+|...|.+| |.|.+.++..|+ |-+++|+||.|++..+|..||. |||..++++
T Consensus 416 ~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pf-G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~K 494 (510)
T KOG0144|consen 416 NGQVEGPEGANLFIYHLPQEFGDQDLIATFQPF-GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSK 494 (510)
T ss_pred CccccCCCccceeeeeCchhhhhHHHHHHhccc-cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccc
Confidence 00001235689999999999999999999996 999999999987 7899999999999999999999 999999999
Q ss_pred eeEEeecCCCCCCC
Q 014866 397 PIRVSPSKTPVRPR 410 (417)
Q Consensus 397 ~l~V~~a~~~~~~~ 410 (417)
+|+|...+....+.
T Consensus 495 rlkVQlk~~~~np~ 508 (510)
T KOG0144|consen 495 RLKVQLKRDRNNPY 508 (510)
T ss_pred cceEEeeeccCCCC
Confidence 99999988776554
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=272.42 Aligned_cols=256 Identities=20% Similarity=0.280 Sum_probs=200.1
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
-++||++||++++. |.++|+.+|+|..+.+..++.+.. ++|||||+ |.-.+ |+ +.|+..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~----------~RGfgfVt-Fam~E-------D~-qrA~~e 66 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSE----------KRGFGFVT-FAMEE-------DV-QRALAE 66 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCccc----------ccCcccee-eehHh-------HH-HHHHHH
Confidence 47999999999977 999999999999999999999988 99999999 99998 88 666655
Q ss_pred cccCC--Cccccccccchh--------------------h----cc--CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCee
Q 014866 208 KSFGQ--GKRRMNSRTSLA--------------------Q----RE--EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV 259 (417)
Q Consensus 208 ~~~~~--gk~~~~~r~~~~--------------------~----~~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~ 259 (417)
..... |+. ++...... + .. ....-.|.|+|||+.+.+.+|+.+|+.||.|.
T Consensus 67 ~~~~kf~Gr~-l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~ 145 (678)
T KOG0127|consen 67 TEQSKFEGRI-LNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVV 145 (678)
T ss_pred hhcCccccee-cccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEE
Confidence 44321 332 11111000 0 00 11144699999999999999999999999999
Q ss_pred EEEEecCCCC-CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCC--C-------------------C-C--
Q 014866 260 DCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA--P-------------------V-N-- 313 (417)
Q Consensus 260 ~v~i~~d~~~-skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~--~-------------------~-~-- 313 (417)
+|.|++...+ -+|||||+|....+|.+||+ +||.+|.||+|.|.|+-.... . . +
T Consensus 146 Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d 225 (678)
T KOG0127|consen 146 EIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADED 225 (678)
T ss_pred EEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccc
Confidence 9999987664 36999999999999999999 999999999999999732100 0 0 0
Q ss_pred --CCC-------CCC-------------------------Cc------------------hhhccccceEEEeCCCCCCC
Q 014866 314 --PTF-------LPR-------------------------TE------------------DEREMCARTIYCTNIDKKVT 341 (417)
Q Consensus 314 --~~~-------~~~-------------------------~~------------------~~~~~~~~~l~V~nLp~~~t 341 (417)
..+ ... +. .+...-..+|||+|||+++|
T Consensus 226 ~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~t 305 (678)
T KOG0127|consen 226 DGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTT 305 (678)
T ss_pred cccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCcccc
Confidence 000 000 00 00011137999999999999
Q ss_pred HHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-h-----CC-ceeCCeeeEEeecCCC
Q 014866 342 QADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-C-----SG-VVLGSLPIRVSPSKTP 406 (417)
Q Consensus 342 e~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-l-----ng-~~l~G~~l~V~~a~~~ 406 (417)
+++|.+.|++| |.|.++.|+.++ +.++|.|||.|.+..+|.+||. . .| ..|.||.|.|..|-+.
T Consensus 306 EEel~~~fskF-G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 306 EEELKEHFSKF-GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred HHHHHHHHHhh-ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99999999995 999999999877 7999999999999999999997 3 23 7899999999998553
No 14
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-33 Score=275.19 Aligned_cols=237 Identities=22% Similarity=0.344 Sum_probs=211.0
Q ss_pred CCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhc
Q 014866 131 SNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKK 208 (417)
Q Consensus 131 ~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~ 208 (417)
++||| ++++| |+++|+++|+|.++++++|. | |+|||||+ |.+++ +| ++|++.+
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t------------slgy~yvn-f~~~~-------da-~~A~~~~ 57 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T------------SLGYAYVN-FQQPA-------DA-ERALDTM 57 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C------------ccceEEEe-cCCHH-------HH-HHHHHHc
Confidence 57899 77777 99999999999999999997 3 56999999 99999 99 9999999
Q ss_pred ccCC--CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHH
Q 014866 209 SFGQ--GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARA 286 (417)
Q Consensus 209 ~~~~--gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~ 286 (417)
|+.. |++ +|++|+++++.. |||.||+++++..+|.++|+.||+|++|++..+.+.++|| ||+|+++++|.+
T Consensus 58 n~~~~~~~~---~rim~s~rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 58 NFDVLKGKP---IRIMWSQRDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKK 130 (369)
T ss_pred CCcccCCcE---EEeehhccCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHH
Confidence 9976 888 999999987765 9999999999999999999999999999999999889999 999999999999
Q ss_pred HHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC
Q 014866 287 ALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 365 (417)
Q Consensus 287 Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~ 365 (417)
|++ +||..+.|++|.|...........+.. . .......+++.|++.+.+++.|.++|.. ||.|.++.++.+.
T Consensus 131 ai~~~ng~ll~~kki~vg~~~~~~er~~~~~-----~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~ 203 (369)
T KOG0123|consen 131 AIEKLNGMLLNGKKIYVGLFERKEEREAPLG-----E-YKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDS 203 (369)
T ss_pred HHHHhcCcccCCCeeEEeeccchhhhccccc-----c-hhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecC
Confidence 999 999999999999988643322111111 1 2223478999999999999999999999 5999999999987
Q ss_pred -CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 366 -HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 366 -~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
+.++||+||.|.++++|..|+. |+|..+.|..+.|..+...
T Consensus 204 ~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 204 IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 7799999999999999999999 9999999999999998763
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=6e-31 Score=273.54 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=134.4
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+.+||||||++++| |+++|++||+|.+|+++.|+.+++ ++|||||+ |.+.+ +| +.|++
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgk----------skGfAFVe-F~s~e-------~A-~~Ai~ 167 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK----------HKGFAFVE-YEVPE-------AA-QLALE 167 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCC----------cCCeEEEE-eCcHH-------HH-HHHHH
Confidence 367899999999988 999999999999999999999999 99999999 99998 88 88998
Q ss_pred hcccCC--Cccccccccchhh-------------ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--
Q 014866 207 KKSFGQ--GKRRMNSRTSLAQ-------------REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-- 269 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r~~~~~-------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-- 269 (417)
.++... |+. +++..+. ......++|||+|||+++++++|+++|+.||.|.+|++.+++.+
T Consensus 168 ~lnG~~i~GR~---IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgk 244 (612)
T TIGR01645 168 QMNGQMLGGRN---IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 244 (612)
T ss_pred hcCCeEEecce---eeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC
Confidence 776543 555 2222211 11123468999999999999999999999999999999998753
Q ss_pred CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 270 VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 270 skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
++|||||+|.+.++|.+|++ ||+..++|+.|+|.++.
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 69999999999999999998 99999999999997753
No 16
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=2.5e-31 Score=270.55 Aligned_cols=322 Identities=20% Similarity=0.231 Sum_probs=235.0
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCcCcC-CCCcccCCChhhhccCCC---------CC---CCCCCCCcChHH--
Q 014866 79 ETMAVVESASQDSAVSSAGSIPASNGQDHPKQN-GGTMVMPLDQGLYNQNNQ---------RS---NGGGDFKRDMRE-- 143 (417)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------r~---~~VgnLp~~~~e-- 143 (417)
-.+|++..++.+.++.+..+++.+.+.++++++ +++++..+...++.+++. |+ ..|||||..+..
T Consensus 322 ~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~e 401 (725)
T KOG0110|consen 322 GANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEE 401 (725)
T ss_pred cccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHH
Confidence 468999999999999999999998888899999 899999888877776543 33 458999998855
Q ss_pred HHHHHhhcCCccEEEccCCCCccccC--------------CC--CCCCCCCccccccccccCcccccC-Cccchh---HH
Q 014866 144 LQELFSKLNPMAEEFVPPSLAKTNNN--------------NH--GVNGFNGGFFANNSLIFNNHNARN-GNVNAN---AA 203 (417)
Q Consensus 144 L~e~F~~~G~I~~v~v~~d~~~~~v~--------------~~--~~~~~~s~gyafV~~F~~~~~~~~-~~~~A~---~~ 203 (417)
|.++|..||+|.++.||+...++.|. +| +.+.++++.++....|.....+.. ...... +.
T Consensus 402 lt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~ 481 (725)
T KOG0110|consen 402 LTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEEN 481 (725)
T ss_pred HHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccC
Confidence 99999999999999888666555542 22 556666666666665552210000 000000 00
Q ss_pred HHhhcccCCCccccccc----cchh--hccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-----CCce
Q 014866 204 VRRKKSFGQGKRRMNSR----TSLA--QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLR 272 (417)
Q Consensus 204 a~~~~~~~~gk~~~~~r----~~~~--~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----~skG 272 (417)
..+......+....... ...+ ........+|||.||++++|.++|..+|...|.|.++.|...++ -|+|
T Consensus 482 ~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmG 561 (725)
T KOG0110|consen 482 PSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMG 561 (725)
T ss_pred cceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccc
Confidence 00110000000000000 0000 00111122399999999999999999999999999998876553 2689
Q ss_pred EEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhh
Q 014866 273 FAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 351 (417)
Q Consensus 273 ~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~ 351 (417)
||||+|.+.++|+.|+. |+|..+.|+.|.|..+. ...... .. ........++.|+|+|||+..+..+|+.+|..
T Consensus 562 fgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~-~k~~~~--~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a 636 (725)
T KOG0110|consen 562 FGFVEFAKPESAQAALKALQGTVLDGHKLELKISE-NKPAST--VG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTA 636 (725)
T ss_pred eeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-Cccccc--cc--cccccccccceeeeeccchHHHHHHHHHHHhc
Confidence 99999999999999999 99999999999999986 111111 00 11111223689999999999999999999999
Q ss_pred cCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 352 VCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 352 f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
| |.|.+|+|+... +.++|||||+|-++.+|.+|++ |.+++|.||+|.++||+..
T Consensus 637 F-GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 637 F-GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred c-cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 5 999999999874 5679999999999999999999 9999999999999999765
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1e-29 Score=251.52 Aligned_cols=170 Identities=22% Similarity=0.379 Sum_probs=150.1
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.|.. .++|||||+|.++++|.+|++ ||+..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3445678999999999999999999999999999999999875 378999999999999999998 9999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHH
Q 014866 303 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAE 380 (417)
Q Consensus 303 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e 380 (417)
.+++.... ....++|||+|||..+|+++|+++|++ ||.|..++|+++. +.++|||||+|.+.+
T Consensus 182 ~~a~p~~~--------------~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 182 SYARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred eccccccc--------------ccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 98753210 112368999999999999999999999 5999999999985 688999999999999
Q ss_pred HHHHHHH-hCCceeCC--eeeEEeecCCCCCCC
Q 014866 381 SAIAALN-CSGVVLGS--LPIRVSPSKTPVRPR 410 (417)
Q Consensus 381 ~A~~Al~-lng~~l~G--~~l~V~~a~~~~~~~ 410 (417)
+|++|++ ||+..+.| ++|+|.|++.....+
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 9999999 99998866 799999998765443
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.2e-28 Score=256.33 Aligned_cols=178 Identities=25% Similarity=0.360 Sum_probs=150.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||||||+++++++|+++|.+||.|.+|+++.|+. .++|||||+|.+.++|.+|++ |||..++|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3567899999999999999999999999999999999875 479999999999999999998 9999999999999865
Q ss_pred CCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 014866 306 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 383 (417)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~ 383 (417)
..... ..+ .... ........++|||+|||+.+++++|+++|++ ||.|.+++|.++. +.++|||||+|.+.++|.
T Consensus 185 ~~~p~-a~~-~~~~-~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQ-AQP-IIDM-VQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccc-ccc-cccc-ccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 32111 000 0000 0111223579999999999999999999999 5999999999986 579999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCCCCCC
Q 014866 384 AALN-CSGVVLGSLPIRVSPSKTPVRPR 410 (417)
Q Consensus 384 ~Al~-lng~~l~G~~l~V~~a~~~~~~~ 410 (417)
+|++ |||..++|+.|+|.++.+++.+.
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 9999 99999999999999998776554
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2e-27 Score=237.15 Aligned_cols=163 Identities=23% Similarity=0.436 Sum_probs=145.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
...+|||+|||.++++++|+++|+.||+|.+|+|++++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 357899999999999999999999999999999999875 479999999999999999998 99999999999999874
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~ 384 (417)
.... .....+|||+|||..+++++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+
T Consensus 82 ~~~~--------------~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSSD--------------SIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred cccc--------------ccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 3211 112368999999999999999999999 5999999999876 6789999999999999999
Q ss_pred HHH-hCCceeCC--eeeEEeecCCCC
Q 014866 385 ALN-CSGVVLGS--LPIRVSPSKTPV 407 (417)
Q Consensus 385 Al~-lng~~l~G--~~l~V~~a~~~~ 407 (417)
|++ |||..+.| .+|.|.|+..+.
T Consensus 147 ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHhCCCccCCCceeEEEEECCCCC
Confidence 998 99999887 679999987664
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=4.7e-27 Score=242.70 Aligned_cols=176 Identities=27% Similarity=0.361 Sum_probs=149.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
....++|||+|||..+++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+||.|+|..+.|++|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999875 3699999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 014866 306 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 383 (417)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~ 383 (417)
........... .......+..++|||+|||..+++++|+++|++ ||.|..|.+.++. |.++|||||+|.+.++|.
T Consensus 166 ~~~~~~~~~~~--~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 166 QAEKNRAAKAA--THQPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred chhhhhhhhcc--cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 43221110000 000001123589999999999999999999999 5999999999886 588999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCC
Q 014866 384 AALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 384 ~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
+|+. |||..|.|++|.|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 9998 9999999999999998643
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.3e-28 Score=239.29 Aligned_cols=257 Identities=20% Similarity=0.285 Sum_probs=207.6
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
..+||.||+++++. |.++|+.||+|.||++..|... ++|| ||. |.+.+ .| .+|++.
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g------------~kg~-FV~-f~~e~-------~a-~~ai~~ 134 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG------------SKGY-FVQ-FESEE-------SA-KKAIEK 134 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC------------ceee-EEE-eCCHH-------HH-HHHHHH
Confidence 34899999999977 9999999999999999998643 6799 999 99998 77 889988
Q ss_pred cccCC--Cccccccccch-hhcc------CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC-CceEEEEE
Q 014866 208 KSFGQ--GKRRMNSRTSL-AQRE------EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIE 277 (417)
Q Consensus 208 ~~~~~--gk~~~~~r~~~-~~~~------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-skG~aFV~ 277 (417)
+|... |+......... ..+. ...-..+||.|++.+++++.|.++|..+|.|.++.++.+..+ ++||+||.
T Consensus 135 ~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 135 LNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred hcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 87643 44422111111 1111 122346999999999999999999999999999999998764 79999999
Q ss_pred ecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCC-----CCCchhhccccceEEEeCCCCCCCHHHHHHHHhh
Q 014866 278 FTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFL-----PRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 351 (417)
Q Consensus 278 F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~-----~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~ 351 (417)
|.+.++|..|++ |++..+++..+.|..+...... ...+. .............|||.|++..++.+.|+++|+.
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~-~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~ 293 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSER-EAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSS 293 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhh-HHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhc
Confidence 999999999999 9999999999999987542111 00011 1111111334679999999999999999999999
Q ss_pred cCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 014866 352 VCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR 410 (417)
Q Consensus 352 f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~~ 410 (417)
||.|.+++|..+. +.++|||||+|.+.++|.+|+. +||..+.|++|.|.++.....++
T Consensus 294 -~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 294 -FGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred -ccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 5999999999987 8999999999999999999999 99999999999999998555443
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.3e-27 Score=226.30 Aligned_cols=168 Identities=24% Similarity=0.343 Sum_probs=145.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcc-cCC--cceE
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTM-LGF--YPVR 301 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~-i~g--~~l~ 301 (417)
+.+.-++|||-||..++|.||+++|++||.|.+|.|++|+.+ ++|||||.|.+.++|.+|+. |++.. |.| ++|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 455678999999999999999999999999999999999975 79999999999999999998 76654 544 6899
Q ss_pred EccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHH
Q 014866 302 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAE 380 (417)
Q Consensus 302 V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e 380 (417)
|+++.... ++-...++|||+-|+..+||.+|+++|++| |.|++|.|.+|. +.+||||||.|.+.+
T Consensus 111 vk~Ad~E~-------------er~~~e~KLFvg~lsK~~te~evr~iFs~f-G~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 111 VKYADGER-------------ERIVEERKLFVGMLSKQCTENEVREIFSRF-GHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred ecccchhh-------------hccccchhhhhhhccccccHHHHHHHHHhh-CccchhhheecccccccceeEEEEehHH
Confidence 99875331 111224899999999999999999999995 999999999998 899999999999999
Q ss_pred HHHHHHH-hCC-ceeCCe--eeEEeecCCCCCC
Q 014866 381 SAIAALN-CSG-VVLGSL--PIRVSPSKTPVRP 409 (417)
Q Consensus 381 ~A~~Al~-lng-~~l~G~--~l~V~~a~~~~~~ 409 (417)
.|..||+ ||| ..+.|+ +|.|+||.+...+
T Consensus 177 ~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 177 MAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 9999999 999 466665 8999999887543
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.6e-26 Score=228.82 Aligned_cols=158 Identities=21% Similarity=0.247 Sum_probs=136.4
Q ss_pred CCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHH
Q 014866 128 NQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVR 205 (417)
Q Consensus 128 ~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~ 205 (417)
..+++||+|||++++| |+++|+.||+|.+|+|++|+.+++ ++|||||+ |.+.+ +| +.|+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~----------srGyaFVe-F~~~e-------~A-~~Ai 166 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY----------SFGYAFVD-FGSEA-------DS-QRAI 166 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc----------cCcEEEEE-EccHH-------HH-HHHH
Confidence 3477999999999988 999999999999999999999999 99999999 99998 88 8888
Q ss_pred hhcccCC--Cccccccccchh--hccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEec
Q 014866 206 RKKSFGQ--GKRRMNSRTSLA--QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFT 279 (417)
Q Consensus 206 ~~~~~~~--gk~~~~~r~~~~--~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~ 279 (417)
+.++... +++ +++.++ ........+|||+|||.++|+++|+++|++||.|..|+|++++. .++|||||+|.
T Consensus 167 ~~LnG~~l~gr~---i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 167 KNLNGITVRNKR---LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred HHcCCCccCCce---eeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 8776543 555 444333 22334567899999999999999999999999999999999875 46899999999
Q ss_pred CHHHHHHHHH-hcCcccCC--cceEEccCCC
Q 014866 280 DEEGARAALN-LAGTMLGF--YPVRVLPSKT 307 (417)
Q Consensus 280 ~~e~A~~Al~-lng~~i~g--~~l~V~~s~~ 307 (417)
+.++|++||+ ||+..+.| ++|.|.++..
T Consensus 244 ~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 244 KREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred CHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 9999999999 99998865 6899998764
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.1e-26 Score=207.23 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=138.5
Q ss_pred CCCCCCCCcChH-H-HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhc
Q 014866 131 SNGGGDFKRDMR-E-LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKK 208 (417)
Q Consensus 131 ~~~VgnLp~~~~-e-L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~ 208 (417)
.+|||.|.+.++ | |++.|.+||+|.+++|++|..|++ |+|||||. |.+.+ +| +.|++.+
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K----------sKGYgFVS-f~~k~-------dA-EnAI~~M 124 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK----------SKGYGFVS-FPNKE-------DA-ENAIQQM 124 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCc----------ccceeEEe-ccchH-------HH-HHHHHHh
Confidence 368999999884 4 999999999999999999999999 99999999 99999 99 9999999
Q ss_pred ccCC-Cccccccccchhhcc------------------CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC
Q 014866 209 SFGQ-GKRRMNSRTSLAQRE------------------EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS 269 (417)
Q Consensus 209 ~~~~-gk~~~~~r~~~~~~~------------------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~ 269 (417)
|..- |++. +|..++.+. ..+.++|||||++.-+||++|++.|++||.|.+|++.+++
T Consensus 125 nGqWlG~R~--IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-- 200 (321)
T KOG0148|consen 125 NGQWLGRRT--IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-- 200 (321)
T ss_pred CCeeeccce--eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--
Confidence 8754 5552 565555432 3456789999999999999999999999999999999987
Q ss_pred CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCC
Q 014866 270 VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPV 312 (417)
Q Consensus 270 skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~ 312 (417)
||+||.|.++|+|.+||. +|+.+++|+.++|.|.+......
T Consensus 201 --GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 201 --GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred --ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 699999999999999997 99999999999999987654433
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=1.6e-24 Score=226.75 Aligned_cols=175 Identities=22% Similarity=0.255 Sum_probs=140.2
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcC------------CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGC------------GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTM 294 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~ 294 (417)
.....++|||||||+.+|+++|+++|..+ +.|..+.+.. .+|||||+|.+.++|..||.|+|..
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~----~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK----EKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC----CCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 34567899999999999999999999974 3455555543 3589999999999999999999999
Q ss_pred cCCcceEEccCCCCCCCCCCC--C---CCC----------CchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEE
Q 014866 295 LGFYPVRVLPSKTAIAPVNPT--F---LPR----------TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 359 (417)
Q Consensus 295 i~g~~l~V~~s~~~~~~~~~~--~---~~~----------~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v 359 (417)
|.|++|.|............. . .+. .........++|||+|||..+++++|+++|+. ||.|..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-FGDLKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEE
Confidence 999999998654322111000 0 000 00011233579999999999999999999999 5999999
Q ss_pred EEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 360 RLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 360 ~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
.|+++. |.++|||||+|.+.++|..|++ |||..|+|+.|.|.++...
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999885 7899999999999999999998 9999999999999998644
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.1e-25 Score=199.48 Aligned_cols=167 Identities=22% Similarity=0.406 Sum_probs=149.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
.....|.|.-||..+|+++|+.+|...|+|++|++++|+- .+.|||||.|-++++|++|+. |||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3456799999999999999999999999999999999986 479999999999999999999 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 014866 306 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 383 (417)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~ 383 (417)
++. ....+ ...|||.+||..+|..+|.++|++| |.|..-+|..|. |.+||.|||.|+...+|+
T Consensus 119 RPS-----------s~~Ik---~aNLYvSGlPktMtqkelE~iFs~f-GrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 119 RPS-----------SDSIK---DANLYVSGLPKTMTQKELEQIFSPF-GRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred cCC-----------hhhhc---ccceEEecCCccchHHHHHHHHHHh-hhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 632 22222 3789999999999999999999995 999999998886 789999999999999999
Q ss_pred HHHH-hCCceeCCe--eeEEeecCCCCCCC
Q 014866 384 AALN-CSGVVLGSL--PIRVSPSKTPVRPR 410 (417)
Q Consensus 384 ~Al~-lng~~l~G~--~l~V~~a~~~~~~~ 410 (417)
.|+. |||..-.|. +|.|+|+..|..+.
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 9999 999988776 89999998885443
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.6e-24 Score=206.85 Aligned_cols=167 Identities=22% Similarity=0.259 Sum_probs=147.7
Q ss_pred hhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccC-Cc
Q 014866 223 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLG-FY 298 (417)
Q Consensus 223 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~-g~ 298 (417)
+....+...+.||||.||.++.|++|.-+|++.|+|-+++|++|+. .+||||||+|.+.+.|+.|++ ||+.+|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3344456678899999999999999999999999999999999975 479999999999999999998 9999985 99
Q ss_pred ceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccC---CCCceEEEE
Q 014866 299 PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY---HHSTRIAFV 374 (417)
Q Consensus 299 ~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~---~~~kG~aFV 374 (417)
.|.|..+-. .+.|||+|||.+.++++|.+.|++. + .|..|.+..++ .+.||||||
T Consensus 155 ~igvc~Sva--------------------n~RLFiG~IPK~k~keeIlee~~kV-teGVvdVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 155 LLGVCVSVA--------------------NCRLFIGNIPKTKKKEEILEEMKKV-TEGVVDVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred EeEEEEeee--------------------cceeEeccCCccccHHHHHHHHHhh-CCCeeEEEEecCccccccccceEEE
Confidence 999988632 3899999999999999999999996 6 68888888754 589999999
Q ss_pred EeCCHHHHHHHHH--hCC-ceeCCeeeEEeecCCCCCCC
Q 014866 375 EFVMAESAIAALN--CSG-VVLGSLPIRVSPSKTPVRPR 410 (417)
Q Consensus 375 ~F~~~e~A~~Al~--lng-~~l~G~~l~V~~a~~~~~~~ 410 (417)
+|.++..|..|.. ++| ..+.|+.+.|.||.+...+.
T Consensus 214 eYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 214 EYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD 252 (506)
T ss_pred EeecchhHHHHHhhccCCceeecCCcceeeccCcccCCC
Confidence 9999999999997 666 68999999999999886654
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=8.9e-25 Score=190.03 Aligned_cols=167 Identities=26% Similarity=0.343 Sum_probs=147.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....+||||||+..++++.|.++|-+.|+|..+++.+|+.+ .+||||++|.++++|+-|++ ||...+-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35679999999999999999999999999999999999864 69999999999999999999 9988899999999987
Q ss_pred CCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEE-EEeccC--CCCceEEEEEeCCHHHH
Q 014866 306 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGDY--HHSTRIAFVEFVMAESA 382 (417)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v-~i~~d~--~~~kG~aFV~F~~~e~A 382 (417)
... ......+.+|||+||.+++++..|++.|+.| |.+.+. .+++++ |.++|||||.|.+.+.+
T Consensus 87 s~~-------------~~nl~vganlfvgNLd~~vDe~~L~dtFsaf-G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 87 SAH-------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAF-GVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccc-------------cccccccccccccccCcchhHHHHHHHHHhc-cccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 411 1112234799999999999999999999985 988775 677776 68999999999999999
Q ss_pred HHHHH-hCCceeCCeeeEEeecCCCCCC
Q 014866 383 IAALN-CSGVVLGSLPIRVSPSKTPVRP 409 (417)
Q Consensus 383 ~~Al~-lng~~l~G~~l~V~~a~~~~~~ 409 (417)
.+|+. |||..++.+++.|.++.....+
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999 9999999999999999766543
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=8.8e-24 Score=219.82 Aligned_cols=161 Identities=21% Similarity=0.231 Sum_probs=136.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccC-CcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~-g~~l~V~~ 304 (417)
+...++|||+|||++++|++|+++|++||.|.+|+|++|.. .++|||||+|.+.++|++||+ ||+..+. |+.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 44568999999999999999999999999999999999854 479999999999999999999 9999885 77777765
Q ss_pred CCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc---CCCCceEEEEEeCCHHH
Q 014866 305 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---YHHSTRIAFVEFVMAES 381 (417)
Q Consensus 305 s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d---~~~~kG~aFV~F~~~e~ 381 (417)
+. ..++|||+|||.++++++|.+.|++++..+..+.+... .++++|||||+|.++++
T Consensus 135 S~--------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ed 194 (578)
T TIGR01648 135 SV--------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRA 194 (578)
T ss_pred cc--------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHH
Confidence 42 13789999999999999999999996334666555432 25789999999999999
Q ss_pred HHHHHH-hC-C-ceeCCeeeEEeecCCCCC
Q 014866 382 AIAALN-CS-G-VVLGSLPIRVSPSKTPVR 408 (417)
Q Consensus 382 A~~Al~-ln-g-~~l~G~~l~V~~a~~~~~ 408 (417)
|.+|+. |+ + ..+.|+.|.|.|+.+...
T Consensus 195 Aa~AirkL~~gki~l~Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 195 AAMARRKLMPGRIQLWGHVIAVDWAEPEEE 224 (578)
T ss_pred HHHHHHHhhccceEecCceEEEEeeccccc
Confidence 999997 64 3 578999999999987643
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=207.69 Aligned_cols=176 Identities=21% Similarity=0.257 Sum_probs=149.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
..||||++||++++.++|.++|+.+|+|..|.++.++++ ++|||||+|+-.++++.|+. .++..+.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 379999999999999999999999999999999999875 69999999999999999998 999999999999999854
Q ss_pred CCCCC-----CCC-----CCCCCchh--hccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEE
Q 014866 308 AIAPV-----NPT-----FLPRTEDE--REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFV 374 (417)
Q Consensus 308 ~~~~~-----~~~-----~~~~~~~~--~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV 374 (417)
..... .+. +....+.. .+.+...|.|+|||+.+.+.+|+.+|+.| |.|..|.|++.. |.-.|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~-G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF-GKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc-ceEEEEEcccCCCCCccceEEE
Confidence 32211 000 00000111 12336799999999999999999999995 999999999876 556699999
Q ss_pred EeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 375 EFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 375 ~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
.|.+..+|..|++ +||..|.||+|-|.||-+..
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 9999999999999 99999999999999997654
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2e-23 Score=198.19 Aligned_cols=251 Identities=19% Similarity=0.267 Sum_probs=194.5
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
..+|||.|.+.+.| ||..|.+||+|.+|.|-.|+.|+. ++||+||+ |.-++ .| .-|++.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~k----------HKgFAFVE-YEvPE-------aA-qLAlEq 174 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK----------HKGFAFVE-YEVPE-------AA-QLALEQ 174 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccccccccc----------ccceEEEE-EeCcH-------HH-HHHHHH
Confidence 56899999999988 999999999999999999999999 99999999 99998 66 888998
Q ss_pred cccCC--Cccccccccchh-------------hccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CC
Q 014866 208 KSFGQ--GKRRMNSRTSLA-------------QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SV 270 (417)
Q Consensus 208 ~~~~~--gk~~~~~r~~~~-------------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~s 270 (417)
+|... ||. +++..+ +.+...-..|||..+.++.+|+||+..|+.||+|..|.+-+++. ++
T Consensus 175 MNg~mlGGRN---iKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 175 MNGQMLGGRN---IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred hccccccCcc---ccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 87754 444 333222 12223446799999999999999999999999999999999886 47
Q ss_pred ceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCC----------------------------------------
Q 014866 271 LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAI---------------------------------------- 309 (417)
Q Consensus 271 kG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~---------------------------------------- 309 (417)
+|||||+|.+..+...|+. ||-..++|.-|+|..+-+..
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg 331 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLG 331 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999998 99999999999986642200
Q ss_pred -------------------------------------CCCCCC--------------------C--------------CC
Q 014866 310 -------------------------------------APVNPT--------------------F--------------LP 318 (417)
Q Consensus 310 -------------------------------------~~~~~~--------------------~--------------~~ 318 (417)
.+..|. + .|
T Consensus 332 ~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqp 411 (544)
T KOG0124|consen 332 TVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQP 411 (544)
T ss_pred ccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcc
Confidence 000000 0 00
Q ss_pred CCchh-------------------------hccccceEEEeCC--CCCCC---HHHHHHHHhhcCCceEEEEEeccCCCC
Q 014866 319 RTEDE-------------------------REMCARTIYCTNI--DKKVT---QADVKLFFESVCGEVYRLRLLGDYHHS 368 (417)
Q Consensus 319 ~~~~~-------------------------~~~~~~~l~V~nL--p~~~t---e~dL~~~F~~f~G~I~~v~i~~d~~~~ 368 (417)
..... +...++.|.++|+ |.+++ +.+|.+.+++| |.|.+|.|.......
T Consensus 412 kl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKf-G~V~rViI~nekq~e 490 (544)
T KOG0124|consen 412 KLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKF-GAVNRVIIYNEKQGE 490 (544)
T ss_pred cccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcc-cceeEEEEEeccccc
Confidence 00000 0123567888998 44444 46899999995 999999887654110
Q ss_pred ------ceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 369 ------TRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 369 ------kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
----||+|....++.+|.+ |+|+.|+|+++..+..
T Consensus 491 ~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 491 EEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred ccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhh
Confidence 1146999999999999999 9999999999987654
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=1.9e-23 Score=208.27 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=185.5
Q ss_pred CCCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHH
Q 014866 127 NNQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV 204 (417)
Q Consensus 127 ~~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a 204 (417)
..+|++|+--|....+. |.++|+.+|.|..|+++.|+.+++ ++|.|||+ |.+.+ .. ..|
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~r----------skgi~Yve-f~D~~-------sV-p~a 237 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRR----------SKGIAYVE-FCDEQ-------SV-PLA 237 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchh----------hcceeEEE-Eeccc-------ch-hhH
Confidence 34677777666655555 999999999999999999999999 99999999 99886 33 444
Q ss_pred HhhcccCC-Cccccccccchhhcc--------------CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-
Q 014866 205 RRKKSFGQ-GKRRMNSRTSLAQRE--------------EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN- 268 (417)
Q Consensus 205 ~~~~~~~~-gk~~~~~r~~~~~~~--------------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~- 268 (417)
+...|... |.+.+ +....+++. ..+-..||||||.+++++++|+.+|++||.|+.|.+..|..
T Consensus 238 iaLsGqrllg~pv~-vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t 316 (549)
T KOG0147|consen 238 IALSGQRLLGVPVI-VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET 316 (549)
T ss_pred hhhcCCcccCceeE-ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccc
Confidence 44433322 44411 221111110 11122399999999999999999999999999999999963
Q ss_pred -CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCC--C-----------C-----------------
Q 014866 269 -SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNP--T-----------F----------------- 316 (417)
Q Consensus 269 -~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~--~-----------~----------------- 316 (417)
.++|||||+|.+.++|.+|++ |||..+.|+.|+|............ . +
T Consensus 317 G~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~ 396 (549)
T KOG0147|consen 317 GRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEG 396 (549)
T ss_pred ccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhcc
Confidence 479999999999999999998 9999999999998653211000000 0 0
Q ss_pred ----CCC------------------------Cchhhc-------cccceEEEeCCCC--CCC--------HHHHHHHHhh
Q 014866 317 ----LPR------------------------TEDERE-------MCARTIYCTNIDK--KVT--------QADVKLFFES 351 (417)
Q Consensus 317 ----~~~------------------------~~~~~~-------~~~~~l~V~nLp~--~~t--------e~dL~~~F~~ 351 (417)
.+. ...... .++.++.++|+-. +.| .+||.+-+++
T Consensus 397 ~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k 476 (549)
T KOG0147|consen 397 KGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGK 476 (549)
T ss_pred CCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHh
Confidence 000 000001 3456777888733 222 3688889999
Q ss_pred cCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 352 VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 352 f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
||.|..|.+.+. +-|+.||.|.+.+.|..|+. |||.+|.|+.|...|-.
T Consensus 477 -~g~v~hi~vd~n---s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 477 -HGKVCHIFVDKN---SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred -cCCeeEEEEccC---CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 599999988553 33899999999999999999 99999999999998853
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=9.5e-23 Score=193.56 Aligned_cols=178 Identities=25% Similarity=0.372 Sum_probs=151.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
--+.||||.|.+++.|+.|+..|.+||+|.+|.+..|+-+ ++|||||+|+-+|.|+.|++ |||.+++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4567999999999999999999999999999999999864 79999999999999999999 99999999999998632
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~ 384 (417)
. .....+-. ....+.......|||..+.++++++||+..|+.| |+|.+|.+.+++ +.++|||||+|.+..+...
T Consensus 192 N-mpQAQpiI--D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF-G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 192 N-MPQAQPII--DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred C-CcccchHH--HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh-cceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 1 00000000 0011223456899999999999999999999995 999999999987 5799999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCCCCC
Q 014866 385 ALN-CSGVVLGSLPIRVSPSKTPVRPRA 411 (417)
Q Consensus 385 Al~-lng~~l~G~~l~V~~a~~~~~~~~ 411 (417)
|+. ||-+.++|+.|+|..+-+++.+..
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTPP~aLl 295 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTPPDALL 295 (544)
T ss_pred HhhhcchhhcccceEecccccCCCchhc
Confidence 999 999999999999999988876543
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=6.2e-23 Score=178.57 Aligned_cols=158 Identities=20% Similarity=0.318 Sum_probs=138.9
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.-++|||||+..++| |+|+|-+.|+|.++++|+|+.+.. .+||||++ |.+++ +| +.|++
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~----------~qGygF~E-f~~ee-------da-dYAik 69 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQK----------HQGYGFAE-FRTEE-------DA-DYAIK 69 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhccc----------ccceeEEE-Eechh-------hh-HHHHH
Confidence 457999999999997 999999999999999999999998 99999999 99999 99 99999
Q ss_pred hcccCC--Cccccccccchhh---ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE-EEEecCCC--CCceEEEEEe
Q 014866 207 KKSFGQ--GKRRMNSRTSLAQ---REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPN--SVLRFAFIEF 278 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r~~~~~---~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~--~skG~aFV~F 278 (417)
.++... |++ +++..+. ........|||+||.++++|..|.+.|+.||.+.+ -.++++.. .++|||||.|
T Consensus 70 iln~VkLYgrp---Irv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~ 146 (203)
T KOG0131|consen 70 ILNMVKLYGRP---IRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINY 146 (203)
T ss_pred HHHHHHhcCce---eEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEec
Confidence 998654 888 6665554 33345578999999999999999999999998765 36777776 4689999999
Q ss_pred cCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 279 TDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 279 ~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
++.+.+.+|+. +||+.+..+++.|.++...
T Consensus 147 ~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 147 ASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred hhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 99999999999 9999999999999997543
No 35
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=2e-22 Score=186.68 Aligned_cols=150 Identities=25% Similarity=0.441 Sum_probs=137.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCC
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAP 311 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~ 311 (417)
+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++...|+.|+. |+|..|.|..|.|+-++..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 6999999999999999999999999999999974 99999999999999998 9999999999999987532
Q ss_pred CCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCC
Q 014866 312 VNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG 390 (417)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng 390 (417)
...+.+|+|+||.+.++.++|+..|++ ||.|..|+|.+| |+||.|+..++|..|+. ||+
T Consensus 75 -------------sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivkd------y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 75 -------------SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred -------------CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeecc------eeEEEEeeccchHHHHhcccc
Confidence 223579999999999999999999999 699999999865 99999999999999999 999
Q ss_pred ceeCCeeeEEeecCCCCCCCC
Q 014866 391 VVLGSLPIRVSPSKTPVRPRA 411 (417)
Q Consensus 391 ~~l~G~~l~V~~a~~~~~~~~ 411 (417)
.+|.|++++|..+....++.+
T Consensus 135 ~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 135 TEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred cccccceeeeeeeccccccCC
Confidence 999999999999877666544
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=178.98 Aligned_cols=187 Identities=22% Similarity=0.367 Sum_probs=151.2
Q ss_pred hhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcc-cCC--
Q 014866 223 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTM-LGF-- 297 (417)
Q Consensus 223 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~-i~g-- 297 (417)
..+....+.++||||-|...-+|+|++.+|..||.|.+|.+.+... .++|+|||.|.+.-+|..||. |+|.. +.|
T Consensus 11 dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 11 DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 3333445788999999999999999999999999999999999876 579999999999999999998 99875 433
Q ss_pred cceEEccCCCCC--------------------------------------------------------------------
Q 014866 298 YPVRVLPSKTAI-------------------------------------------------------------------- 309 (417)
Q Consensus 298 ~~l~V~~s~~~~-------------------------------------------------------------------- 309 (417)
..|.|+++.+..
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 467777764400
Q ss_pred ------CCC--------CC-----------------CC---------------------------CCC------------
Q 014866 310 ------APV--------NP-----------------TF---------------------------LPR------------ 319 (417)
Q Consensus 310 ------~~~--------~~-----------------~~---------------------------~~~------------ 319 (417)
.+. .+ .+ .+.
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence 000 00 00 000
Q ss_pred --------------------C------chhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceE
Q 014866 320 --------------------T------EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRI 371 (417)
Q Consensus 320 --------------------~------~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~ 371 (417)
. .....+.+++|||..||.+..+.+|.++|-+| |.|.+.++..|. +.+|+|
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF-GhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF-GHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc-cceeeeeeeehhccccccce
Confidence 0 00012447899999999999999999999995 999999999987 789999
Q ss_pred EEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 014866 372 AFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR 410 (417)
Q Consensus 372 aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~~ 410 (417)
|||.|+++.+|+.||. |||..|+-++|+|...+|....|
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred eeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 9999999999999999 99999999999999998876554
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1e-20 Score=188.91 Aligned_cols=179 Identities=30% Similarity=0.374 Sum_probs=150.0
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhcCcccCCcceEEcc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 304 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~ 304 (417)
++.+.+++|+--|+...+..+|+++|+.+|.|..|+++.|..+ ++|.|||+|.+.+....|+.|.|+.+.|.+|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 3456789999999999999999999999999999999999864 79999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCc-hhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHH
Q 014866 305 SKTAIAPVNPTFLPRTE-DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAES 381 (417)
Q Consensus 305 s~~~~~~~~~~~~~~~~-~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~ 381 (417)
+......... ..+... .....+...|||+||.+++++++|+.+|++| |.|..|.+..|. |.++|||||+|.+.++
T Consensus 255 sEaeknr~a~-~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf-g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 255 SEAEKNRAAN-ASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF-GKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cHHHHHHHHh-ccccccccccccchhhhhhcccccCchHHHHhhhccCc-ccceeeeeccccccccccCcceEEEecHHH
Confidence 6433221000 001111 1112233449999999999999999999996 999999999994 8999999999999999
Q ss_pred HHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 382 AIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 382 A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
|.+|+. |||.+|.|+.|+|.......
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeec
Confidence 999998 99999999999998865443
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=3.1e-19 Score=172.44 Aligned_cols=170 Identities=21% Similarity=0.297 Sum_probs=147.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
+.++||||+|+++++++.|+++|.+||+|.+|.+++|+.+ ++||+||+|++.+....++....+.|.|+.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6789999999999999999999999999999999999874 69999999999999999998778889999998888643
Q ss_pred CCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHH
Q 014866 308 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~A 385 (417)
....... .......+|||++||..+++++++++|.+ ||.|..+.++.|. ..++||+||.|.+.+++.++
T Consensus 85 r~~~~~~--------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQTKV--------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ccccccc--------ccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEecccccccee
Confidence 2211111 01113579999999999999999999999 5999999999987 58999999999999999999
Q ss_pred HHhCCceeCCeeeEEeecCCCCC
Q 014866 386 LNCSGVVLGSLPIRVSPSKTPVR 408 (417)
Q Consensus 386 l~lng~~l~G~~l~V~~a~~~~~ 408 (417)
+....+.|+|+.+.|..|.|...
T Consensus 156 ~~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred cccceeeecCceeeEeeccchhh
Confidence 99999999999999999987653
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=2.5e-19 Score=166.23 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=123.7
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
-.+||||||..+++ |+.+|++||.|.+|.|+. .||||. ..+.. .| +.|+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------------------NYgFVH-iEdkt-------aa-edairN 55 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------------------NYGFVH-IEDKT-------AA-EDAIRN 55 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------------------ccceEE-eeccc-------cc-HHHHhh
Confidence 35899999999877 999999999999999876 579999 88875 45 777875
Q ss_pred c-ccCC-CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHH
Q 014866 208 K-SFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGAR 285 (417)
Q Consensus 208 ~-~~~~-gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~ 285 (417)
+ ++.. |.. +.+..+......+.+|+||||.+.++.++|+..|.+||+|.+|.|++ +|+||.|.-.++|.
T Consensus 56 LhgYtLhg~n---InVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~ 126 (346)
T KOG0109|consen 56 LHGYTLHGVN---INVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAV 126 (346)
T ss_pred cccceecceE---EEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchH
Confidence 5 4443 555 66666665566788999999999999999999999999999999997 49999999999999
Q ss_pred HHHH-hcCcccCCcceEEccCCCC
Q 014866 286 AALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 286 ~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
.|+. ||+.++.|++++|+.+...
T Consensus 127 ~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred HHHhcccccccccceeeeeeeccc
Confidence 9998 9999999999999997543
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=1.1e-16 Score=155.59 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=117.8
Q ss_pred CCCCCCCCCCcChHH--HHHHHh-hcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHH
Q 014866 129 QRSNGGGDFKRDMRE--LQELFS-KLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVR 205 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~-~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~ 205 (417)
.|++||.|||++..- |++||. +.|+|.-|.+.-|...+ ++|+|.|+ |.+++ .+ ++|+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK-----------~rGcavVE-Fk~~E-------~~-qKa~ 103 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGK-----------ARGCAVVE-FKDPE-------NV-QKAL 103 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCC-----------cCCceEEE-eeCHH-------HH-HHHH
Confidence 378999999998855 999996 57999999999997665 89999999 99998 67 8888
Q ss_pred hhcccCC--Cccccccccchh-------------------------------------------------hc--------
Q 014866 206 RKKSFGQ--GKRRMNSRTSLA-------------------------------------------------QR-------- 226 (417)
Q Consensus 206 ~~~~~~~--gk~~~~~r~~~~-------------------------------------------------~~-------- 226 (417)
+.++... |++.+ ++.... ++
T Consensus 104 E~lnk~~~~GR~l~-vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~ 182 (608)
T KOG4212|consen 104 EKLNKYEVNGRELV-VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTN 182 (608)
T ss_pred HHhhhccccCceEE-EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcc
Confidence 8776432 33311 110000 00
Q ss_pred ----------------------------cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEE
Q 014866 227 ----------------------------EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIE 277 (417)
Q Consensus 227 ----------------------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~ 277 (417)
.+.....+||+||.+.+..+.|++.|.--|.|+.|.+-.|+. .++|||.++
T Consensus 183 t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~ 262 (608)
T KOG4212|consen 183 TMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIE 262 (608)
T ss_pred ccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEE
Confidence 011223599999999999999999999999999999988886 579999999
Q ss_pred ecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 278 FTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 278 F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
|..+-+|..||. +++.-+..++..+
T Consensus 263 y~hpveavqaIsml~~~g~~~~~~~~ 288 (608)
T KOG4212|consen 263 YDHPVEAVQAISMLDRQGLFDRRMTV 288 (608)
T ss_pred ecchHHHHHHHHhhccCCCcccccee
Confidence 999999999998 7765554444443
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=5.5e-18 Score=163.81 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHH
Q 014866 128 NQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVR 205 (417)
Q Consensus 128 ~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~ 205 (417)
....+|||+|+++++| |+++|++||+|..|.+++|+.+++ ++|||||+ |.+.+ .. ..++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~r----------srgFgfv~-f~~~~-------~v-~~vl 65 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGR----------SRGFGFVT-FATPE-------GV-DAVL 65 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCC----------ccccccee-cCCCc-------ch-heee
Confidence 3467999999999988 999999999999999999999999 99999999 99776 23 3333
Q ss_pred hhcccC-CCccccccccch-hhccC----CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEE
Q 014866 206 RKKSFG-QGKRRMNSRTSL-AQREE----IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIE 277 (417)
Q Consensus 206 ~~~~~~-~gk~~~~~r~~~-~~~~~----~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~ 277 (417)
...... .|+.....+... ..... ...++||||+||.++++++++++|.+||.|..+.++.|..+ ++||+||.
T Consensus 66 ~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 66 NARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred cccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 333322 244311111111 11111 13458999999999999999999999999999999998874 69999999
Q ss_pred ecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 278 FTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 278 F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
|.+++++.+++....+.|.|+.+.|..+.+
T Consensus 146 ~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 146 FDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eccccccceecccceeeecCceeeEeeccc
Confidence 999999999999889999999999998743
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.8e-16 Score=137.28 Aligned_cols=164 Identities=17% Similarity=0.249 Sum_probs=128.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
..++|||||||.++.+.+|+++|-+||.|..|.+...+. .-+||||+|++..+|+.||. -+|..++|..|+|+++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 568899999999999999999999999999998865443 34799999999999999999 9999999999999998654
Q ss_pred CCCCCCC--CCCC----------CchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEe
Q 014866 309 IAPVNPT--FLPR----------TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 376 (417)
Q Consensus 309 ~~~~~~~--~~~~----------~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F 376 (417)
....... +... ...........+.|.+||++-+++||++...+. |.|....+.+| |.+.|+|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea-GdvCfadv~rD-----g~GvV~~ 157 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA-GDVCFADVQRD-----GVGVVEY 157 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh-CCeeeeeeecc-----cceeeee
Confidence 2111000 0000 000001123678999999999999999999995 99999999877 3789999
Q ss_pred CCHHHHHHHHH-hCCcee--CCeeeEE
Q 014866 377 VMAESAIAALN-CSGVVL--GSLPIRV 400 (417)
Q Consensus 377 ~~~e~A~~Al~-lng~~l--~G~~l~V 400 (417)
...++.+.|+. |+...+ .|-...+
T Consensus 158 ~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred eehhhHHHHHHhhccccccCcCcEeeE
Confidence 99999999998 776544 4444333
No 43
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.68 E-value=1.1e-15 Score=138.26 Aligned_cols=170 Identities=24% Similarity=0.360 Sum_probs=137.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHH----HHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAA----LFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~----~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
...||||.||+..+..++|+. +|++||.|.+|...... ..+|-|||.|.+.+.|-.|+. |+|..+-|++++|++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 344999999999999999887 99999999999887544 357999999999999999998 999999999999999
Q ss_pred CCCCCC---CCCCCCCCC---------------------------------CchhhccccceEEEeCCCCCCCHHHHHHH
Q 014866 305 SKTAIA---PVNPTFLPR---------------------------------TEDEREMCARTIYCTNIDKKVTQADVKLF 348 (417)
Q Consensus 305 s~~~~~---~~~~~~~~~---------------------------------~~~~~~~~~~~l~V~nLp~~~te~dL~~~ 348 (417)
++.... ....++..+ .......+...+|+.|||.+++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 865311 100011000 00111345689999999999999999999
Q ss_pred HhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecC
Q 014866 349 FESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSK 404 (417)
Q Consensus 349 F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~-G~~l~V~~a~ 404 (417)
|.+| +....++++... .+.|||+|.+...|..|.. ++|..+. ...++|.+++
T Consensus 167 f~qf-~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQF-PGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhC-cccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9995 999999988753 3499999999999999999 9998776 8899998875
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.6e-16 Score=162.94 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=129.2
Q ss_pred CCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhcc
Q 014866 132 NGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 209 (417)
Q Consensus 132 ~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~~ 209 (417)
+||.||+++++. |..+|...|.|.++.|..-+... +..+|.|||||+ |.+.+ +| ..|++.++
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~-------~k~lSmGfgFVE-F~~~e-------~A-~~a~k~lq 581 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPA-------NKYLSMGFGFVE-FAKPE-------SA-QAALKALQ 581 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccc-------ccccccceeEEE-ecCHH-------HH-HHHHHHhc
Confidence 899999998877 99999999999999877654332 146699999999 99999 89 89999887
Q ss_pred cCC--Cccccccccch--------hhccC-CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEE
Q 014866 210 FGQ--GKRRMNSRTSL--------AQREE-IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFI 276 (417)
Q Consensus 210 ~~~--gk~~~~~r~~~--------~~~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV 276 (417)
... |+. +-++++. ..... .....|+|.|||+..+-.+++++|..||.+.+|+|+.... .++|||||
T Consensus 582 gtvldGH~-l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv 660 (725)
T KOG0110|consen 582 GTVLDGHK-LELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFV 660 (725)
T ss_pred CceecCce-EEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceee
Confidence 542 544 2233332 11111 1134799999999999999999999999999999988633 46999999
Q ss_pred EecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 277 EFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 277 ~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
.|-++.+|.+|+. |.+..+-||.|.+.|++.
T Consensus 661 ~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 661 DFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred eccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 9999999999998 888889999999999853
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=9e-15 Score=141.53 Aligned_cols=169 Identities=27% Similarity=0.315 Sum_probs=134.0
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 231 RRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 231 ~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
...|.|.||.. .+|.+.|..+|.-||.|..|+|..++. --|.|+|.+...|+.|++ |+|..+.|++|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 46788999975 599999999999999999999999875 369999999999999999 9999999999999999765
Q ss_pred CCCCCCC----------C----CCCCc-------hhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEE-EEeccCC
Q 014866 309 IAPVNPT----------F----LPRTE-------DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGDYH 366 (417)
Q Consensus 309 ~~~~~~~----------~----~~~~~-------~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v-~i~~d~~ 366 (417)
....... + ..+.. ..--+++.+|++.|+|.+++|++|+++|... |...+. +...
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~-g~~vkafkff~--- 449 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP-GGQVKAFKFFQ--- 449 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcC-CceEEeeeecC---
Confidence 3322110 0 00000 0012557899999999999999999999985 755444 4332
Q ss_pred CCceEEEEEeCCHHHHHHHHH-hCCceeCCe-eeEEeecCCC
Q 014866 367 HSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRVSPSKTP 406 (417)
Q Consensus 367 ~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~-~l~V~~a~~~ 406 (417)
+.+-+|.+.+.+.++|..|+- ++.+.+++. .|+|+|++..
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 234499999999999999998 988888776 9999999864
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=6e-15 Score=142.75 Aligned_cols=168 Identities=23% Similarity=0.282 Sum_probs=128.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceE-EEEEecCHHHHHHHHH-hcCcccC-C-cceEEccCCCC
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEEGARAALN-LAGTMLG-F-YPVRVLPSKTA 308 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~-aFV~F~~~e~A~~Al~-lng~~i~-g-~~l~V~~s~~~ 308 (417)
.++|+|+-+-+|-+-|..+|++||.|..|.-..... || |.|+|.+.+.|..|.. |+|..|- | ..|+|.+++-.
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc---chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 478899999999999999999999999876554433 45 8999999999999998 9999873 3 46777776421
Q ss_pred --------------CCCCC--------------------------CCCCCCCch------hh-cc--ccceEEEeCCCC-
Q 014866 309 --------------IAPVN--------------------------PTFLPRTED------ER-EM--CARTIYCTNIDK- 338 (417)
Q Consensus 309 --------------~~~~~--------------------------~~~~~~~~~------~~-~~--~~~~l~V~nLp~- 338 (417)
..+.- |...|.... .. +. ....|.|.||..
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 00000 000000000 00 11 146788888866
Q ss_pred CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 339 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 339 ~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
.+|.+-|.-+|+- ||.|.+|+|..+++ --|.|.|.+...|+-|++ |+|..+.|++|+|.+++...
T Consensus 309 ~VT~d~LftlFgv-YGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 309 AVTPDVLFTLFGV-YGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ccchhHHHHHHhh-hcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 5899999999997 79999999998764 269999999999999999 99999999999999997663
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=2.2e-15 Score=131.53 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=74.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
.++|||+|||..+++++|+++|++ ||.|.+|.|+.|. +.++|||||+|.+.++|++|++ ||+..|+|+.|+|+|+.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 578999999999999999999999 5999999999886 6899999999999999999998 99999999999999997
Q ss_pred CCCC
Q 014866 405 TPVR 408 (417)
Q Consensus 405 ~~~~ 408 (417)
+...
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6543
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.63 E-value=4.3e-15 Score=147.15 Aligned_cols=245 Identities=20% Similarity=0.218 Sum_probs=173.1
Q ss_pred CCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhcccC
Q 014866 134 GGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFG 211 (417)
Q Consensus 134 VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~~~~ 211 (417)
+..|||++|+ |.++|+.|+ |.++.+++. +++ ..|=|||+ |.+++ ++ ++|+++.-..
T Consensus 15 ~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr----------~sGeA~Ve-~~see-------dv-~~AlkkdR~~ 72 (510)
T KOG4211|consen 15 LRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGR----------PSGEAYVE-FTSEE-------DV-EKALKKDRES 72 (510)
T ss_pred ecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCC----------cCcceEEE-eechH-------HH-HHHHHhhHHH
Confidence 5899999988 999999997 777766654 455 55779999 99998 88 8888876544
Q ss_pred CCcccccccc------chh---h--ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE-EEEecCCC-CCceEEEEEe
Q 014866 212 QGKRRMNSRT------SLA---Q--REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPN-SVLRFAFIEF 278 (417)
Q Consensus 212 ~gk~~~~~r~------~~~---~--~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~-~skG~aFV~F 278 (417)
.|.+.+.+-. .+. . ........|-+++||+.+|++||.++|+..-.+.. +.++.+.. .+.|-|||+|
T Consensus 73 mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF 152 (510)
T KOG4211|consen 73 MGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQF 152 (510)
T ss_pred hCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEe
Confidence 4433221111 011 1 11124567999999999999999999997644444 44555554 4789999999
Q ss_pred cCHHHHHHHHHhcCcccCCcceEEccCCCC-----C------CC-CCCC-------------------------------
Q 014866 279 TDEEGARAALNLAGTMLGFYPVRVLPSKTA-----I------AP-VNPT------------------------------- 315 (417)
Q Consensus 279 ~~~e~A~~Al~lng~~i~g~~l~V~~s~~~-----~------~~-~~~~------------------------------- 315 (417)
++.+.|++|+.-+...|+.+-|.|..+... . .. +.+.
T Consensus 153 ~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g 232 (510)
T KOG4211|consen 153 ESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEG 232 (510)
T ss_pred cCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCC
Confidence 999999999998888888888888654210 0 00 0000
Q ss_pred ---C----------------------CCCC-chhh----------ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEE
Q 014866 316 ---F----------------------LPRT-EDER----------EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 359 (417)
Q Consensus 316 ---~----------------------~~~~-~~~~----------~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v 359 (417)
+ .+.. .... ......++.++||+..++.++.++|+. .....|
T Consensus 233 ~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~~v 310 (510)
T KOG4211|consen 233 YYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPYRV 310 (510)
T ss_pred ccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCceeE
Confidence 0 0000 0000 111267889999999999999999996 455577
Q ss_pred EEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 360 RLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 360 ~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
.|-..+ ++..|-|+|+|.|.++|..||.-++..+..+-|.+-.
T Consensus 311 ~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFl 354 (510)
T KOG4211|consen 311 HIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFL 354 (510)
T ss_pred EEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecc
Confidence 776665 7899999999999999999998777777777666544
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.62 E-value=7.8e-15 Score=145.32 Aligned_cols=170 Identities=24% Similarity=0.228 Sum_probs=134.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~ 308 (417)
.....|-+.+|||++|+++|.++|+.| .|+.+.+.+......|-|||+|.+.+++++|++.+...+..+-|.|-.+...
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 345568889999999999999999999 4888888887677789999999999999999999999999999999887432
Q ss_pred CCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEE-EEEeccC-CCCceEEEEEeCCHHHHHHHH
Q 014866 309 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGDY-HHSTRIAFVEFVMAESAIAAL 386 (417)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~-v~i~~d~-~~~kG~aFV~F~~~e~A~~Al 386 (417)
... ..+.+.... ...+...|.+++||+.+|++||.++|+.. -.+.. |.++.+. +++.|-|||.|++.+.|++|+
T Consensus 87 e~d--~~~~~~g~~-s~~~d~vVRLRGLPfscte~dI~~FFaGL-~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 87 EAD--WVMRPGGPN-SSANDGVVRLRGLPFSCTEEDIVEFFAGL-EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccc--ccccCCCCC-CCCCCceEEecCCCccCcHHHHHHHhcCC-cccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 211 111111111 11345789999999999999999999974 33333 3455555 789999999999999999999
Q ss_pred HhCCceeCCeeeEEeec
Q 014866 387 NCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 387 ~lng~~l~G~~l~V~~a 403 (417)
.-|...|+-|-|.|-.+
T Consensus 163 ~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHhhccceEEeehh
Confidence 98888888888888765
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.60 E-value=2.9e-14 Score=138.95 Aligned_cols=179 Identities=22% Similarity=0.244 Sum_probs=144.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHh-cCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...|.+||.|||+++...+|+++|. +.|+|+.|.+..|.. +++|+|.|+|+++|.+++|++ ||.+.+.||+|.|+..
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456799999999999999999998 689999999999986 589999999999999999999 9999999999999765
Q ss_pred CCCCCC-------------------------CCC----------CCCCCCch----------------------------
Q 014866 306 KTAIAP-------------------------VNP----------TFLPRTED---------------------------- 322 (417)
Q Consensus 306 ~~~~~~-------------------------~~~----------~~~~~~~~---------------------------- 322 (417)
...... .+. .+.+++.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 331000 000 00010000
Q ss_pred --------hhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCce
Q 014866 323 --------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVV 392 (417)
Q Consensus 323 --------~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~ 392 (417)
-..+-...+||.||.+.+....|.+.|.= .|.|..+.+-.|+ +.++|||.++|.++-+|..|+. +++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 01233568999999999999999999997 5999999999887 8999999999999999999999 88878
Q ss_pred eCCeeeEEeecCCCCC
Q 014866 393 LGSLPIRVSPSKTPVR 408 (417)
Q Consensus 393 l~G~~l~V~~a~~~~~ 408 (417)
+..++..+....-+.+
T Consensus 281 ~~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 281 LFDRRMTVRLDRIPDR 296 (608)
T ss_pred Cccccceeeccccccc
Confidence 8888888887654443
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.3e-14 Score=126.71 Aligned_cols=79 Identities=25% Similarity=0.473 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+++|+++|+++|++||.|.+|.++.|+. .++|||||+|.+.++|+.|++ ||+..|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4567899999999999999999999999999999999875 479999999999999999998 9999999999999998
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 54
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=9.3e-14 Score=132.24 Aligned_cols=175 Identities=18% Similarity=0.264 Sum_probs=136.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE--------EEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGF 297 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g 297 (417)
+.....|||.|||.++|.+++.++|++||-|.. |++.++.. +-+|=|.+.|-..+++..|+. |++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345667999999999999999999999997754 78888775 459999999999999999999 99999999
Q ss_pred cceEEccCCCCCCCC-CCC----------------------CCCCC-chhhccccceEEEeCCCC----CCC-------H
Q 014866 298 YPVRVLPSKTAIAPV-NPT----------------------FLPRT-EDEREMCARTIYCTNIDK----KVT-------Q 342 (417)
Q Consensus 298 ~~l~V~~s~~~~~~~-~~~----------------------~~~~~-~~~~~~~~~~l~V~nLp~----~~t-------e 342 (417)
+.|+|..++-..... ++. +.|.. ........++|.++||-. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999875321110 000 01111 111234468999999832 223 4
Q ss_pred HHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 343 ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 343 ~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
++|++-+++ ||.|.+|.|.-. .+.|.+-|.|.+.++|..|++ |+|+.|+||.|..+...-
T Consensus 291 edl~eec~K-~G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 291 EDLTEECEK-FGQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHH-hCCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 677778899 599999988643 357799999999999999999 999999999999877543
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6.6e-14 Score=141.99 Aligned_cols=251 Identities=19% Similarity=0.182 Sum_probs=174.5
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhc-----------C-CccEEEccCCCCccccCCCCCCCCCCccccccccccCccccc
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKL-----------N-PMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNAR 194 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~-----------G-~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~ 194 (417)
.|-++||++|..++| +..+|..- | .+.++.+-. ...|+|+. |.+.+
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~----------------~~nfa~ie-~~s~~--- 234 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL----------------EKNFAFIE-FRSIS--- 234 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc----------------cccceeEE-ecCCC---
Confidence 367899999999988 77777654 1 133333222 56789999 88887
Q ss_pred CCccchhHHHHhhcccCC-Cccccccc-----------cchh-----------hccCCCCcEEEEcCCCCCCcHHHHHHH
Q 014866 195 NGNVNANAAVRRKKSFGQ-GKRRMNSR-----------TSLA-----------QREEIIRRTVYVSDIDQQVTEEQLAAL 251 (417)
Q Consensus 195 ~~~~~A~~~a~~~~~~~~-gk~~~~~r-----------~~~~-----------~~~~~~~~~lfV~nLp~~~te~~L~~~ 251 (417)
+| ..++...+... |.+....+ .... .........+||++||...++.++.++
T Consensus 235 ----~a-t~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~El 309 (500)
T KOG0120|consen 235 ----EA-TEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKEL 309 (500)
T ss_pred ----ch-hhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHH
Confidence 66 44444333211 22200000 0000 011223456999999999999999999
Q ss_pred HhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCC---------CC
Q 014866 252 FVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFL---------PR 319 (417)
Q Consensus 252 F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~---------~~ 319 (417)
...||.+....++.+.. .++||||.+|.+......|+. |||..++++.|.|..+-......+.... +.
T Consensus 310 l~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~ 389 (500)
T KOG0120|consen 310 LDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPL 389 (500)
T ss_pred HHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchh
Confidence 99999999999999886 479999999999999999999 9999999999999887432221111111 00
Q ss_pred C-chhhccccceEEEeCCCC--CC-CH-------HHHHHHHhhcCCceEEEEEecc-C----CCCceEEEEEeCCHHHHH
Q 014866 320 T-EDEREMCARTIYCTNIDK--KV-TQ-------ADVKLFFESVCGEVYRLRLLGD-Y----HHSTRIAFVEFVMAESAI 383 (417)
Q Consensus 320 ~-~~~~~~~~~~l~V~nLp~--~~-te-------~dL~~~F~~f~G~I~~v~i~~d-~----~~~kG~aFV~F~~~e~A~ 383 (417)
. ......++..|.+.|+-. ++ .+ ++++.-+++ ||.|.+|.++++ . ....|-.||+|.+.++++
T Consensus 390 ~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~q 468 (500)
T KOG0120|consen 390 LMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQ 468 (500)
T ss_pred hhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHH
Confidence 0 011123445666666521 11 22 456666778 599999999987 2 246778999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCC
Q 014866 384 AALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 384 ~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
+|++ |+|..|.||+|...|...
T Consensus 469 rA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 469 RAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHccCceeCCcEEEEEecCH
Confidence 9999 999999999999998753
No 54
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=5.9e-15 Score=134.78 Aligned_cols=158 Identities=25% Similarity=0.321 Sum_probs=127.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 310 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~ 310 (417)
..+|||+||+.+.+.+|+.+|..||.+..+.+.. ||+||+|.+..+|.-|+. +|+..|.|..+.|.++.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 3589999999999999999999999999998865 799999999999999998 999999998899998864211
Q ss_pred CC-CC--CCCCC---CchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHH
Q 014866 311 PV-NP--TFLPR---TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 311 ~~-~~--~~~~~---~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~ 384 (417)
.. .+ ..... ...........+.+.|++..+.+.+|.+.|.+ +|.+....+ ..+++||+|.+.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh------hccccceeehhhhhhhh
Confidence 11 00 01000 00111223467889999999999999999999 599966655 34589999999999999
Q ss_pred HHH-hCCceeCCeeeEEee
Q 014866 385 ALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 385 Al~-lng~~l~G~~l~V~~ 402 (417)
|+. |+|..+.|+.|.+..
T Consensus 149 a~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cchhccchhhcCceeeecc
Confidence 999 999999999999944
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.55 E-value=5.8e-14 Score=126.27 Aligned_cols=163 Identities=21% Similarity=0.265 Sum_probs=121.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC---CceEEEEEecCHHHHHHHHH-hcCcccC---Ccce
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEEGARAALN-LAGTMLG---FYPV 300 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~---skG~aFV~F~~~e~A~~Al~-lng~~i~---g~~l 300 (417)
+..-+||||.+||.++...+|+.+|..|-..+.+.+...... .+-+||++|.+...|..|+. |||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345789999999999999999999999977777776653321 35799999999999999998 9999985 7788
Q ss_pred EEccCCCCCCCC------CC---C-----------C-------------------------C------------------
Q 014866 301 RVLPSKTAIAPV------NP---T-----------F-------------------------L------------------ 317 (417)
Q Consensus 301 ~V~~s~~~~~~~------~~---~-----------~-------------------------~------------------ 317 (417)
+|..++.+.... .| . + .
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 888875431100 00 0 0 0
Q ss_pred CCCch---------hhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-
Q 014866 318 PRTED---------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN- 387 (417)
Q Consensus 318 ~~~~~---------~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~- 387 (417)
|.... .....+.+|||.||..+++|++|+.+|+.| .....++|....| ...||++|++.+.|..||.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~-~gf~~l~~~~~~g--~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY-PGFHILKIRARGG--MPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC-CCceEEEEecCCC--cceEeecHHHHHHHHHHHHH
Confidence 00000 001225689999999999999999999995 6666666654434 3489999999999999998
Q ss_pred hCCcee
Q 014866 388 CSGVVL 393 (417)
Q Consensus 388 lng~~l 393 (417)
|+|..|
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 999766
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=4.4e-14 Score=106.88 Aligned_cols=68 Identities=31% Similarity=0.550 Sum_probs=63.8
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecC-CCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceE
Q 014866 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 301 (417)
Q Consensus 234 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~ 301 (417)
|||+|||.++|+++|+++|++||.|..+.+..+ ...++|||||+|.+.++|.+|++ ++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999996 34569999999999999999999 999999999885
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=7.6e-14 Score=105.57 Aligned_cols=68 Identities=29% Similarity=0.490 Sum_probs=64.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc-CCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 014866 331 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 399 (417)
Q Consensus 331 l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d-~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~ 399 (417)
|||+|||..+++++|+++|++ ||.|..+.+..+ .+..+|+|||+|.+.++|.+|++ |||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999 599999999996 47899999999999999999999 999999999985
No 58
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.1e-13 Score=127.85 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~ 308 (417)
..++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.+.++|..|+.|||..|.|++|.|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 357999999999999999999999999999999998874 469999999999999999999999999999999998643
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.8e-13 Score=129.50 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=74.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
.++|+|.|||+...+-||+.+|++| |.|.+|.|+.+...+||||||+|++.++|++|.+ |||..+.||+|.|..|...
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kf-G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKF-GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhh-CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 4899999999999999999999995 9999999999886699999999999999999998 9999999999999998665
Q ss_pred CC
Q 014866 407 VR 408 (417)
Q Consensus 407 ~~ 408 (417)
..
T Consensus 175 V~ 176 (376)
T KOG0125|consen 175 VH 176 (376)
T ss_pred hc
Confidence 43
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.4e-13 Score=125.68 Aligned_cols=77 Identities=26% Similarity=0.441 Sum_probs=71.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~ 406 (417)
.++|||+|||+.+++++|+++|+. ||.|.+|.|+.+.. ++|||||+|.+.++|..|+.|||..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 479999999999999999999997 79999999998864 578999999999999999999999999999999999743
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=126.06 Aligned_cols=77 Identities=19% Similarity=0.436 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
+.++|||-.||.+..+.+|...|-.||.|.+.++.-|+. .|+.||||.|.+..+|+.||. |||..|+=++|+|...+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 456799999999999999999999999999999998875 479999999999999999998 99999999999998854
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=123.97 Aligned_cols=156 Identities=28% Similarity=0.387 Sum_probs=116.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
..+|||+|||.++|+++|+++|..||.|..+.+..++ ..++|||||.|.+.++|..|+. ++|..+.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999987 3579999999999999999999 999999999999999642
Q ss_pred ----CCCCCC---CCC---CCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC--CCceEEEEE
Q 014866 308 ----AIAPVN---PTF---LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 375 (417)
Q Consensus 308 ----~~~~~~---~~~---~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~--~~kG~aFV~ 375 (417)
...... ..+ ..............+++.+++..++..++...|.. +|.+....+..... ......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCcccccccccc
Confidence 111100 000 00111112344678999999999999999999998 59997777766542 233344444
Q ss_pred eCCHHHHHHHHH
Q 014866 376 FVMAESAIAALN 387 (417)
Q Consensus 376 F~~~e~A~~Al~ 387 (417)
+.....+..+..
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 444444444444
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.3e-13 Score=123.08 Aligned_cols=79 Identities=28% Similarity=0.361 Sum_probs=75.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
...+|.|.||+.++++++|+++|.+| |.|.+|.|.+|. |.++|||||.|.+.++|.+||+ |||+-++.-.|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f-g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF-GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc-CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35789999999999999999999996 999999999997 8999999999999999999999 9999999999999999
Q ss_pred CCC
Q 014866 404 KTP 406 (417)
Q Consensus 404 ~~~ 406 (417)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=1.3e-12 Score=99.39 Aligned_cols=68 Identities=32% Similarity=0.522 Sum_probs=61.9
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 014866 331 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 399 (417)
Q Consensus 331 l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~ 399 (417)
|||+|||+.+++++|+++|+. ||.|..+.+..+. +.++|+|||+|.+.++|.+|++ ++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999 5999999999876 7889999999999999999999 888999999985
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.3e-13 Score=110.88 Aligned_cols=78 Identities=31% Similarity=0.418 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
...+.+||||||++.++|++|.++|+++|+|..|.+=.|+. ++.|||||+|.+.++|..|+. ++|..+..++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34678999999999999999999999999999998877765 579999999999999999999 999999999999998
Q ss_pred C
Q 014866 305 S 305 (417)
Q Consensus 305 s 305 (417)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 66
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=2.3e-12 Score=119.10 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~ 308 (417)
...+|||+||++.+|+++|+++|+.||.|.+|+|++|.. .+|||||+|.++++|..|+.|+|..|.+++|.|.+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 457899999999999999999999999999999999854 458999999999999999999999999999999987543
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.4e-12 Score=123.54 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
...+.|+|.|||+...|.||+.+|.+||.|.+|.|+.+...|||||||+|++.++|++|.+ |+|..+.||+|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4567899999999999999999999999999999999998999999999999999999998 999999999999998754
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=2.1e-12 Score=98.23 Aligned_cols=68 Identities=35% Similarity=0.567 Sum_probs=61.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceE
Q 014866 234 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 301 (417)
Q Consensus 234 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~ 301 (417)
|||+|||+++++++|+++|+.||.|..+.+..++. .++|+|||+|.+.++|.+|+. +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999765 358999999999999999999 787999999874
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.4e-12 Score=117.58 Aligned_cols=80 Identities=26% Similarity=0.351 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
-.+..+|-|.|||.+++|++|+++|.+||.|..|.+.+|+.+ ++|||||.|.+.++|.+||. |||.-+...-|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 347788999999999999999999999999999999999986 69999999999999999999 999999999999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
+++
T Consensus 266 skP 268 (270)
T KOG0122|consen 266 SKP 268 (270)
T ss_pred cCC
Confidence 864
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.35 E-value=8.3e-11 Score=113.10 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=128.1
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 231 RRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 231 ~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
...+.|-+|... ++-+.|-.+|-.||.|+.|++++.+. |-|.|++.+..+.++|+. ||+..+-|.+|.|..++..
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 346889999865 77889999999999999999998775 799999999999999999 9999999999999998764
Q ss_pred CCCCCCCC--------------------CCCCch---hhccccceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEecc
Q 014866 309 IAPVNPTF--------------------LPRTED---EREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGD 364 (417)
Q Consensus 309 ~~~~~~~~--------------------~~~~~~---~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d 364 (417)
.......| ...... .-..+++.|+.-|.|..+||+.|.++|... + .-.++++...
T Consensus 364 ~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek-~v~~~svkvFp~ 442 (494)
T KOG1456|consen 364 FVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEK-DVPPTSVKVFPL 442 (494)
T ss_pred ccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhc-CCCcceEEeecc
Confidence 32211111 000000 014567899999999999999999999874 4 4577888776
Q ss_pred CCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 014866 365 YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL 396 (417)
Q Consensus 365 ~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~ 396 (417)
+.....-|.++|++.++|..|+. +|...+.+.
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 64333368999999999999998 999888764
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=7.2e-12 Score=93.91 Aligned_cols=71 Identities=34% Similarity=0.536 Sum_probs=66.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
+|+|+|||..+++++|+++|.+ ||.|..+.+..+.+.++|+|||+|.+.++|..|++ ++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999 59999999998877788999999999999999999 99999999999874
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.8e-12 Score=117.88 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
-.+||||||++.++.+.|+++|++||+|++..|+.|+.+ |+|||||+|.+.++|.+|++-..-.|+||+-.|..+.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 457999999999999999999999999999999999874 79999999999999999999666689999988887643
No 73
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.34 E-value=7.4e-12 Score=120.58 Aligned_cols=251 Identities=16% Similarity=0.132 Sum_probs=162.7
Q ss_pred CCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhcccC
Q 014866 134 GGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFG 211 (417)
Q Consensus 134 VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~~~~ 211 (417)
..+|||.-.+ +..+|+-..-..--+.+-....++ --|.|-|. |.+.+ .- +-|+++....
T Consensus 65 aRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgr----------Rnge~lvr-f~d~e-------~R-dlalkRhkhh 125 (508)
T KOG1365|consen 65 ARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGR----------RNGEALVR-FVDPE-------GR-DLALKRHKHH 125 (508)
T ss_pred ecCCCCCcccCCHHHHHhhhhccccceeeeehhhhc----------cccceEEE-ecCch-------hh-hhhhHhhhhh
Confidence 3788887766 888887542221111111112233 34678899 99976 33 5556554332
Q ss_pred C-Ccc----------cccccc--ch-hhccC--CCCcEEEEcCCCCCCcHHHHHHHHhc---C-CCeeEEEEecCCC-CC
Q 014866 212 Q-GKR----------RMNSRT--SL-AQREE--IIRRTVYVSDIDQQVTEEQLAALFVG---C-GQVVDCRICGDPN-SV 270 (417)
Q Consensus 212 ~-gk~----------~~~~r~--~~-~~~~~--~~~~~lfV~nLp~~~te~~L~~~F~~---~-G~I~~v~i~~d~~-~s 270 (417)
. ++. .+.+.. +. ...-. ...-.|.+++||+++++.++.++|.+ . |..+.|-++..++ ..
T Consensus 126 ~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrp 205 (508)
T KOG1365|consen 126 MGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRP 205 (508)
T ss_pred ccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCc
Confidence 2 222 000000 00 00001 12345778999999999999999962 2 3556666666644 56
Q ss_pred ceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCCC-------------CCC-CCCCCC---CCCchhhccccceEEE
Q 014866 271 LRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA-------------IAP-VNPTFL---PRTEDEREMCARTIYC 333 (417)
Q Consensus 271 kG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~-------------~~~-~~~~~~---~~~~~~~~~~~~~l~V 333 (417)
.|-|||.|..+++|+.|+.-+...++-|-|.+-.+... ..+ ...... |...-.......+|.+
T Consensus 206 TGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRL 285 (508)
T KOG1365|consen 206 TGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRL 285 (508)
T ss_pred ccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEe
Confidence 89999999999999999987888888887777654321 000 011111 1111111223579999
Q ss_pred eCCCCCCCHHHHHHHHhhcCCceEE--EEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 334 TNIDKKVTQADVKLFFESVCGEVYR--LRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 334 ~nLp~~~te~dL~~~F~~f~G~I~~--v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
++||++.+.+||.++|..|--.|.. |.+..+. |++.|-|||+|.+.++|..|.. .+.+...+|.|.|-.+
T Consensus 286 RGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 286 RGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred cCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 9999999999999999987335554 6776665 8999999999999999999998 7777778999888765
No 74
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=9e-12 Score=115.13 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=70.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
..+|||+||++.+|+++|+++|+. ||.|.+|+|++|. ..+|||||+|.++++|..|+.|+|..|.|++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 479999999999999999999997 7999999999984 456899999999999999999999999999999998653
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.2e-12 Score=105.80 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=71.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
..+.+|||+||.+.++|++|.++|+. ||.|..|.+-.|. ..+-|||||+|-+.++|..|+. ++|..+..++|.+.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999 8999999988876 4678999999999999999999 999999999999999
Q ss_pred c
Q 014866 403 S 403 (417)
Q Consensus 403 a 403 (417)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 76
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1e-11 Score=108.90 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=105.0
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+..||||||.++.| |.++|.+||.|..|.+..-+ . ...||||+ |.++- || +.|+.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g----------~ppfafVe-FEd~R-------DA-eDAiy 63 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---G----------PPPFAFVE-FEDPR-------DA-EDAIY 63 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---C----------CCCeeEEE-ecCcc-------ch-hhhhh
Confidence 477899999999988 99999999999998864322 2 34899999 99998 88 66665
Q ss_pred hc-ccCC-Cccccccccchhh-------------------------ccC---CCCcEEEEcCCCCCCcHHHHHHHHhcCC
Q 014866 207 KK-SFGQ-GKRRMNSRTSLAQ-------------------------REE---IIRRTVYVSDIDQQVTEEQLAALFVGCG 256 (417)
Q Consensus 207 ~~-~~~~-gk~~~~~r~~~~~-------------------------~~~---~~~~~lfV~nLp~~~te~~L~~~F~~~G 256 (417)
.. +|.- |-+ .++..+. +-+ .....|.|.+||.+-+.++|+++...-|
T Consensus 64 gRdGYdydg~r---LRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG 140 (241)
T KOG0105|consen 64 GRDGYDYDGCR---LRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG 140 (241)
T ss_pred cccccccCcce---EEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC
Confidence 44 3322 211 1111110 001 1223599999999999999999999999
Q ss_pred CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccC
Q 014866 257 QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG 296 (417)
Q Consensus 257 ~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~ 296 (417)
.|....+.+| |++.|+|...++..-|+. |+.+.+.
T Consensus 141 dvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 141 DVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred Ceeeeeeecc-----cceeeeeeehhhHHHHHHhhcccccc
Confidence 9998888877 589999999999999998 8777664
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=9.5e-12 Score=93.22 Aligned_cols=71 Identities=41% Similarity=0.619 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
+|||+|||..+++++|+++|.+||.|..+.+..+...++|+|||+|.+.++|..|+. +++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999999999998875578999999999999999998 99999999998763
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=8.2e-12 Score=99.66 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=71.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..+.|||+|||+.+|.++..++|.+ ||.|.+|+|-...+ .+|.|||.|++..+|.+|++ |+|..+.++.|.|-+-++
T Consensus 17 vnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 3589999999999999999999999 69999999976653 68899999999999999999 999999999999998765
Q ss_pred C
Q 014866 406 P 406 (417)
Q Consensus 406 ~ 406 (417)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.5e-12 Score=111.07 Aligned_cols=75 Identities=28% Similarity=0.422 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
..+.||||||+..+++.+|+..|..||++.+|.|-..+- |||||+|++..+|+.|+. |+|..|.|..|+|+.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 467899999999999999999999999999999988554 899999999999999998 999999999999999854
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=6.8e-12 Score=124.16 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=71.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCH--HHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA--ESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~--e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
....+|||+||++.++++||+.+|.+ ||.|.+|.|++..| ||||||+|.+. .++.+||. |||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34579999999999999999999999 59999999997766 99999999987 78999999 999999999999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9875
No 81
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.30 E-value=1.8e-11 Score=111.14 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=116.0
Q ss_pred CCCCCCCCCcCh--HH----HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHH
Q 014866 130 RSNGGGDFKRDM--RE----LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAA 203 (417)
Q Consensus 130 r~~~VgnLp~~~--~e----L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~ 203 (417)
.++||.||+..+ +| |..+|++||.|..|.+.+. .+ .+|-|||. |.+.+ .| ..
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~K----------mRGQA~Vv-Fk~~~-------~A-s~ 67 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PK----------MRGQAFVV-FKETE-------AA-SA 67 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CC----------ccCceEEE-ecChh-------HH-HH
Confidence 389999999966 44 7779999999999987753 34 77889999 99987 56 66
Q ss_pred HHhhcccCC--Cccccccccchhh----------------------------------------------------ccCC
Q 014866 204 VRRKKSFGQ--GKRRMNSRTSLAQ----------------------------------------------------REEI 229 (417)
Q Consensus 204 a~~~~~~~~--gk~~~~~r~~~~~----------------------------------------------------~~~~ 229 (417)
|+..++.-. |++ +++..+. ....
T Consensus 68 A~r~l~gfpFygK~---mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~p 144 (221)
T KOG4206|consen 68 ALRALQGFPFYGKP---MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAP 144 (221)
T ss_pred HHHHhcCCcccCch---hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCC
Confidence 776664332 554 3322110 0012
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccC-CcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~-g~~l~V~~s~ 306 (417)
....+|+.|||.+++.+.|..+|.+|.....++++.... +.|||+|.+...|..|.. ++|..+. ...+.|.+++
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 345799999999999999999999999999999988654 799999999999999998 9998876 7888887763
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=7.8e-12 Score=123.73 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCH--HHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--EGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~--e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
...+||||||++.+++++|+..|..||.|.+|.|++.. +||||||+|.+. .++.+||. |||..+.|+.|+|..++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET--GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK--GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc--CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45689999999999999999999999999999999554 499999999987 68999998 99999999999999886
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 83
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.5e-12 Score=115.55 Aligned_cols=83 Identities=28% Similarity=0.374 Sum_probs=77.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
.++|||++|..++++.-|...|-+| |.|..|.++.|- +++||||||+|...++|.+||. ||+.+|.||.|+|.+|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPF-GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPF-GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccc-cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3899999999999999999999995 999999999986 6899999999999999999999 99999999999999999
Q ss_pred CCCCCCC
Q 014866 405 TPVRPRA 411 (417)
Q Consensus 405 ~~~~~~~ 411 (417)
|...+..
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 8865544
No 84
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.29 E-value=4.8e-10 Score=107.92 Aligned_cols=248 Identities=19% Similarity=0.147 Sum_probs=168.2
Q ss_pred CCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhcc
Q 014866 132 NGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKS 209 (417)
Q Consensus 132 ~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~~ 209 (417)
+.|.+|-..+.| |.+..+.||+|.-+.+++-+. -+-|+ |.+-+.+..+..-| ....-
T Consensus 34 vhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r----------------~alve-fedi~~akn~Vnfa----a~n~i 92 (494)
T KOG1456|consen 34 VHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR----------------QALVE-FEDIEGAKNCVNFA----ADNQI 92 (494)
T ss_pred EEEeccccccchhHHHHHHhcCCceEEEEeccccc----------------eeeee-eccccchhhheehh----ccCcc
Confidence 458999999988 999999999999988887443 35677 77665211111111 00000
Q ss_pred cCCCcc-cccc----ccchhhccC-CCCcEEEEc--CCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCH
Q 014866 210 FGQGKR-RMNS----RTSLAQREE-IIRRTVYVS--DIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE 281 (417)
Q Consensus 210 ~~~gk~-~~~~----r~~~~~~~~-~~~~~lfV~--nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~ 281 (417)
+..|.. .++- .+.....+. .....|.+. |--+.+|-+.|..+....|.|..|.|.+... -.|.|+|++.
T Consensus 93 ~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng---VQAmVEFdsv 169 (494)
T KOG1456|consen 93 YIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG---VQAMVEFDSV 169 (494)
T ss_pred cccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc---eeeEEeechh
Confidence 111211 0000 011111111 233344444 4446799999999999999999999887643 3699999999
Q ss_pred HHHHHHHH-hcCcccC-C-cceEEccCCCCCC--------------CC-----CC-----------C--------C----
Q 014866 282 EGARAALN-LAGTMLG-F-YPVRVLPSKTAIA--------------PV-----NP-----------T--------F---- 316 (417)
Q Consensus 282 e~A~~Al~-lng~~i~-g-~~l~V~~s~~~~~--------------~~-----~~-----------~--------~---- 316 (417)
+.|++|.+ |||..|- | ..|+|.++++... +. .+ . +
T Consensus 170 ~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h 249 (494)
T KOG1456|consen 170 EVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGH 249 (494)
T ss_pred HHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCC
Confidence 99999998 9999973 3 4788888764210 00 00 0 0
Q ss_pred --------------CCC-----Cch-------hhccccceEEEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCc
Q 014866 317 --------------LPR-----TED-------EREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHST 369 (417)
Q Consensus 317 --------------~~~-----~~~-------~~~~~~~~l~V~nLp~~-~te~dL~~~F~~f~G~I~~v~i~~d~~~~k 369 (417)
.|. ..+ ....++..+.|.+|... ++-+.|.++|.- ||.|..|++++.+ .
T Consensus 250 ~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~Cl-YGNV~rvkFmkTk---~ 325 (494)
T KOG1456|consen 250 SGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCL-YGNVERVKFMKTK---P 325 (494)
T ss_pred CCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhh-cCceeeEEEeecc---c
Confidence 000 000 01234578889999874 788999999997 7999999999875 2
Q ss_pred eEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 370 RIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 370 G~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
|-|.|++.+..+.++|+. ||+..+.|.+|.|.+++...
T Consensus 326 gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 326 GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 489999999999999999 99999999999999987653
No 85
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.3e-11 Score=118.60 Aligned_cols=171 Identities=19% Similarity=0.273 Sum_probs=119.4
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-----CCce---EEEEEecCHHHHHHHHH-hcCcccCC
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLR---FAFIEFTDEEGARAALN-LAGTMLGF 297 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----~skG---~aFV~F~~~e~A~~Al~-lng~~i~g 297 (417)
....+++||||+||++++|+.|...|..||.+. |......+ .++| |+|+.|+++.++...+. +.- .+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 345678899999999999999999999999864 44543221 1466 99999999988887765 211 22
Q ss_pred cceEEccCCCCCCCC----------CCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--
Q 014866 298 YPVRVLPSKTAIAPV----------NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-- 365 (417)
Q Consensus 298 ~~l~V~~s~~~~~~~----------~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-- 365 (417)
..+.+..+....... +..|.- .....-.+.+||||++||.-++.++|..+|+..||.|..+-|-.|+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~-d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVL-DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhh-ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 222222211111000 001110 1111233569999999999999999999999888999999999995
Q ss_pred CCCceEEEEEeCCHHHHHHHHH-----hCCceeCCeeeEEeec
Q 014866 366 HHSTRIAFVEFVMAESAIAALN-----CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 366 ~~~kG~aFV~F~~~e~A~~Al~-----lng~~l~G~~l~V~~a 403 (417)
..++|-|-|+|.+..+-.+||. |+...|.- +|.|+..
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEIkPY 451 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEIKPY 451 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhhheEEEeccccce-eeeecce
Confidence 6899999999999999999996 34444433 5666543
No 86
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.3e-11 Score=112.30 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=71.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
.++|||+||+.+++.+.|+++|++| |+|+...|+.|+ +++||||||+|.+.++|.+|++--.-.|+||+-.|.+|--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 4799999999999999999999995 999999999998 7999999999999999999998455678999999999865
Q ss_pred C
Q 014866 406 P 406 (417)
Q Consensus 406 ~ 406 (417)
.
T Consensus 91 g 91 (247)
T KOG0149|consen 91 G 91 (247)
T ss_pred c
Confidence 3
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.4e-11 Score=107.39 Aligned_cols=77 Identities=23% Similarity=0.310 Sum_probs=70.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
.++|||+||+..+++.||..+|.. ||.|.+|.|...+ -|||||+|+++.+|..|+. |+|..|+|..|+|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 489999999999999999999998 6999999998854 4699999999999999999 9999999999999998765
Q ss_pred CC
Q 014866 407 VR 408 (417)
Q Consensus 407 ~~ 408 (417)
.+
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=1.1e-10 Score=87.84 Aligned_cols=72 Identities=36% Similarity=0.540 Sum_probs=66.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
+|+|+|||..+++++|+++|+. ||.|..+.+..+. +.++|+|||+|.+.++|..|++ +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999 5999999999876 4678999999999999999999 999999999999875
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=5.7e-11 Score=88.56 Aligned_cols=68 Identities=32% Similarity=0.494 Sum_probs=62.7
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 333 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 333 V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
|+|||..+++++|+++|++ ||.|..+.+..+. +.++|+|||+|.+.++|..|++ +++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999 5999999998875 5789999999999999999999 99999999999874
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.21 E-value=2.5e-11 Score=108.26 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=75.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
...+|.|-||-+.++.++|+.+|++ ||.|-+|.|+.|. ..++|||||.|.+..+|+.|++ |+|.+|+|+.|.|++|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3578999999999999999999999 7999999999998 6899999999999999999999 9999999999999998
Q ss_pred CCCCC
Q 014866 404 KTPVR 408 (417)
Q Consensus 404 ~~~~~ 408 (417)
+-...
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 65533
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=2.4e-11 Score=101.47 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=72.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
....|||.++..+.++++|.+.|.. ||+|+.+.+-.|. |..+|||.|+|++.++|++|++ |||..|.|+.|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3589999999999999999999999 5999999998886 7899999999999999999999 9999999999999997
Q ss_pred C
Q 014866 404 K 404 (417)
Q Consensus 404 ~ 404 (417)
=
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 3
No 92
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.9e-12 Score=113.17 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
-.++.-|||||||++.||.+|.-.|++||+|+.|.+++|+.+ |+||||+.|++..+...|+. |||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 346778999999999999999999999999999999999975 79999999999999999998 999999999999988
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 643
No 93
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=4.2e-12 Score=133.08 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=167.7
Q ss_pred CCCCCCCCcChHH---HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 131 SNGGGDFKRDMRE---LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 131 ~~~VgnLp~~~~e---L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
...+.|+.+...+ .+..|..+|.|..|+.+.-..... ..-++++. +.... .+ +.+...
T Consensus 573 e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h----------~q~~~~~~-~s~~~-------~~-esat~p 633 (881)
T KOG0128|consen 573 EKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAH----------EQPQQQKV-QSKHG-------SA-ESATVP 633 (881)
T ss_pred hhcccCCCcchhhHHhhHHHhhcccccccccCcccccccc----------ccchhhhh-hcccc-------ch-hhcccc
Confidence 3456677776655 789999999999999876444432 22267887 76665 34 444333
Q ss_pred cccCCCccccccccchhhcc----------CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEec--CCCCCceEEE
Q 014866 208 KSFGQGKRRMNSRTSLAQRE----------EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG--DPNSVLRFAF 275 (417)
Q Consensus 208 ~~~~~gk~~~~~r~~~~~~~----------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~--d~~~skG~aF 275 (417)
.+...+-+....-...+... .....++||.||+..+.+.+|...|..+|.+..+++.. +.+.-+|+||
T Consensus 634 a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y 713 (881)
T KOG0128|consen 634 AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAY 713 (881)
T ss_pred cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccccccee
Confidence 33222111111111111100 01234699999999999999999999999888877763 3334689999
Q ss_pred EEecCHHHHHHHHHhcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCc
Q 014866 276 IEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGE 355 (417)
Q Consensus 276 V~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~ 355 (417)
+.|..++++.+|+.++...+.| ...++|.|.|+..|.++++.++..+ |.
T Consensus 714 ~~F~~~~~~~aaV~f~d~~~~g------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~-gn 762 (881)
T KOG0128|consen 714 VEFLKPEHAGAAVAFRDSCFFG------------------------------KISVAISGPPFQGTKEELKSLASKT-GN 762 (881)
T ss_pred eEeecCCchhhhhhhhhhhhhh------------------------------hhhhheeCCCCCCchHHHHhhcccc-CC
Confidence 9999999999999955444443 1478999999999999999999995 99
Q ss_pred eEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 014866 356 VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVR 408 (417)
Q Consensus 356 I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~ 408 (417)
+++.+++... |+++|.|+|.|.+..+|.++.. ++...+.-+.+.|..++|...
T Consensus 763 ~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 763 VTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred ccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 9999988876 8999999999999999999997 888888888888888777543
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=5.8e-11 Score=94.82 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
+...+.|||.|||+++|.++..++|.+||.|..|++=..+. .+|-|||.|++..+|.+|+. |+|..+.++.+.|.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 45678899999999999999999999999999999976654 36999999999999999998 9999999999999875
No 95
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=3.3e-12 Score=111.71 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=71.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
+.-|||+|||+.+||.||.-.|++ ||+|..|.+++|. |+++||||+.|++..+..-|+. |||..|.||.|+|...-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 478999999999999999999999 6999999999997 8999999999999999999998 99999999999998753
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=1.3e-10 Score=84.55 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=49.9
Q ss_pred HHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 345 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 345 L~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
|+++|++ ||.|..+.+.++. +|+|||+|.+.++|..|++ |||..++|++|+|.||
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6889999 5999999998765 4699999999999999999 9999999999999986
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.18 E-value=3.3e-11 Score=107.53 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....+|.|-||-+-++.++|+.+|++||.|-+|.|.+|..+ ++|||||.|.+..+|+.|++ |+|.+++|+.|.|+.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 35578999999999999999999999999999999999865 79999999999999999999 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 653
No 98
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=86.90 Aligned_cols=68 Identities=38% Similarity=0.589 Sum_probs=62.4
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 236 VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 236 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
|+|||..+++++|+++|++||.|..+.+..++. .++|||||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999998764 468999999999999999998 99999999998873
No 99
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=9.8e-11 Score=109.82 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=73.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.+.+||||.-|+..++|..|+..|+. ||.|+.|.|++|. |+++|||||+|.+..+..+|.+ .+|..|+|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45699999999999999999999998 6999999999996 8999999999999999999999 999999999999988
Q ss_pred cCC
Q 014866 403 SKT 405 (417)
Q Consensus 403 a~~ 405 (417)
-.-
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 643
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.16 E-value=2.2e-10 Score=86.19 Aligned_cols=72 Identities=44% Similarity=0.641 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
+|+|+|||..+++++|+++|+.||.|..+.+..++. .++|+|||+|.+.++|..|+. +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998765 358999999999999999998 999999999998763
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.8e-11 Score=119.10 Aligned_cols=173 Identities=23% Similarity=0.338 Sum_probs=137.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC-----------C-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGC-----------G-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGF 297 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~-----------G-~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g 297 (417)
..+.+||+++|+.++++....+|..- | .+..+.+-..+ .|||++|.+.++|..|+.+++..+.|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~----nfa~ie~~s~~~at~~~~~~~~~f~g 249 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK----NFAFIEFRSISEATEAMALDGIIFEG 249 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc----cceeEEecCCCchhhhhcccchhhCC
Confidence 45679999999999999999998843 3 36667665555 49999999999999999999999999
Q ss_pred cceEEccCCCCCCCCCCCCCC--------CC-chhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--C
Q 014866 298 YPVRVLPSKTAIAPVNPTFLP--------RT-EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--H 366 (417)
Q Consensus 298 ~~l~V~~s~~~~~~~~~~~~~--------~~-~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~ 366 (417)
.++++...............+ .. ..........+||+|||..+++.+++++...| |.+....+..+. |
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f-g~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF-GPLKAFRLVKDSATG 328 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc-ccchhheeecccccc
Confidence 999886643322211111110 00 00112345789999999999999999999995 999999999987 6
Q ss_pred CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 367 HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 367 ~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
.++||||.+|.++.-...|+. |||..++++.|.|..|-...
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 899999999999999999999 99999999999999985543
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=108.12 Aligned_cols=77 Identities=35% Similarity=0.522 Sum_probs=73.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..+|||+|||..+++++|+++|.. ||.|..+.+..+. +.++|||||+|.+.++|..|+. ++|..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999 5999999999986 8999999999999999999999 99999999999999976
Q ss_pred C
Q 014866 405 T 405 (417)
Q Consensus 405 ~ 405 (417)
+
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 103
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.9e-11 Score=107.90 Aligned_cols=81 Identities=32% Similarity=0.423 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++||||+|..+++|.-|...|-+||.|..|.++.|-. ++||||||+|...|+|..||. ||+..+.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999875 479999999999999999998 999999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
+++.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 8764
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.4e-10 Score=108.79 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
..-+||||+-|+++++|..|+..|+.||+|..|+|+.|+. .++|||||+|+++.+...|.+ .+|..|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4678999999999999999999999999999999999975 479999999999999999998 9999999999999875
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 4
No 105
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1.7e-10 Score=96.38 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
.-.|||.++...++|++|.+.|..||+|..+.+-.|..+ .+|||+|+|++.++|++|+. +||..+.|.+|.|.|+-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 345999999999999999999999999999999988876 49999999999999999998 99999999999999974
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.08 E-value=2.4e-10 Score=115.58 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=74.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
+.+||+|+|+++++++|.++|+. .|.|.++++..|. |+++||||++|.+.++|..|++ |||.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 79999999999999999999999 5999999999997 8999999999999999999999 999999999999999876
Q ss_pred CCC
Q 014866 406 PVR 408 (417)
Q Consensus 406 ~~~ 408 (417)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 543
No 107
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.4e-10 Score=106.31 Aligned_cols=142 Identities=21% Similarity=0.242 Sum_probs=105.5
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
..+|||+||+.+.| |.++|..||.+..+.|.. |||||. |.+.- +| ..|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------------------gf~fv~-fed~r-------da-~Dav~~ 54 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------------------GFGFVE-FEDPR-------DA-DDAVHD 54 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------------------ccceec-cCchh-------hh-hcccch
Confidence 35789999999987 999999999999887654 889999 99987 55 444433
Q ss_pred cccCC--Ccc----------------ccccccchhh---ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecC
Q 014866 208 KSFGQ--GKR----------------RMNSRTSLAQ---REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD 266 (417)
Q Consensus 208 ~~~~~--gk~----------------~~~~r~~~~~---~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d 266 (417)
++... |.. .-..+..+.. ........+.|.|++..+...+|.++|.++|.+....+
T Consensus 55 l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--- 131 (216)
T KOG0106|consen 55 LDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--- 131 (216)
T ss_pred hcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---
Confidence 33211 111 0000111111 11234556999999999999999999999999855444
Q ss_pred CCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 267 PNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 267 ~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
..+++||+|+..++|..|+. +++..+.|+.|.+..
T Consensus 132 ---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 ---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ---hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 23699999999999999999 999999999999944
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.07 E-value=6.7e-10 Score=84.74 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=51.5
Q ss_pred HHHHHHHHh----hcCCceEEEE-EeccC----CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 342 QADVKLFFE----SVCGEVYRLR-LLGDY----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 342 e~dL~~~F~----~f~G~I~~v~-i~~d~----~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
+++|+++|+ + ||.|.++. +..++ +.++|||||+|.+.++|.+|+. |||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 8 59999995 55443 6789999999999999999999 99999999999863
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=7e-10 Score=80.65 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=50.0
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 248 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 248 L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
|+++|++||+|..+.+..+. +++|||+|.+.++|..|++ |||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998876 4799999999999999998 9999999999999874
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=5.6e-10 Score=112.94 Aligned_cols=76 Identities=36% Similarity=0.513 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
+.|||||+|+++++++|.++|+..|.|.+++++.|+.+ ++||||++|.+.++|..|++ |||..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 78999999999999999999999999999999999875 69999999999999999999 999999999999999743
No 111
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=2.2e-09 Score=81.84 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=51.1
Q ss_pred HHHHHHHHh----cCCCeeEEE-EecCC----CCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 245 EEQLAALFV----GCGQVVDCR-ICGDP----NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 245 e~~L~~~F~----~~G~I~~v~-i~~d~----~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
+++|+++|+ .||.|.+|. ++.++ ..++|||||+|.+.++|.+|+. |||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999999995 55554 3479999999999999999998 9999999999976
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=3.3e-10 Score=102.03 Aligned_cols=136 Identities=24% Similarity=0.345 Sum_probs=114.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
...++|||+|+...++|+-|.++|-+-|+|..|.|..++.....||||.|.++-+..-|++ +||..+.+.++.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r-- 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR-- 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc--
Confidence 4568999999999999999999999999999999998877543499999999999999999 9999999999887763
Q ss_pred CCCCCCCCCCCCCchhhccccceEEEeC----CCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHH
Q 014866 308 AIAPVNPTFLPRTEDEREMCARTIYCTN----IDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESA 382 (417)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A 382 (417)
.++ |...++++.+...|+.. |.+..+++.++. |..+.++|+.+..-.+.
T Consensus 85 -------------------------~G~shapld~r~~~ei~~~v~s~a-~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 85 -------------------------CGNSHAPLDERVTEEILYEVFSQA-GPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred -------------------------cCCCcchhhhhcchhhheeeeccc-CCCCCccccccccCCccCccchhhhhhhcC
Confidence 222 55678899999999985 999999999986 77888999999876666
Q ss_pred HHHHH-hCCce
Q 014866 383 IAALN-CSGVV 392 (417)
Q Consensus 383 ~~Al~-lng~~ 392 (417)
-.++. ..+..
T Consensus 139 P~~~~~y~~l~ 149 (267)
T KOG4454|consen 139 PFALDLYQGLE 149 (267)
T ss_pred cHHhhhhcccC
Confidence 66665 44443
No 113
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.86 E-value=1.4e-08 Score=91.89 Aligned_cols=61 Identities=26% Similarity=0.427 Sum_probs=51.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCccc
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML 295 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i 295 (417)
+|||.||..++||++|+.+|+.|......+|.... +...||+.|++.+.|..||. |+|..+
T Consensus 212 tlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 212 TLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 59999999999999999999999776666664432 34689999999999999998 998775
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.2e-08 Score=97.86 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=68.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH--hCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN--CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~--lng~~l~G~~l~V~~a 403 (417)
....+|||++|-..+++.+|++.|.+ ||+|.++++... +|+|||+|.+.++|+.|.+ +|...|.|++|+|.|+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 34589999999999999999999999 699999999865 4499999999999999987 8989999999999999
Q ss_pred CC
Q 014866 404 KT 405 (417)
Q Consensus 404 ~~ 405 (417)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 115
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.80 E-value=5.9e-09 Score=100.81 Aligned_cols=176 Identities=20% Similarity=0.203 Sum_probs=133.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCc-ccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALNLAGT-MLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~~skG~aFV~F~~~e~A~~Al~lng~-~i~g~~l~V~~s~ 306 (417)
...++|+|++...+.+.++..++..+|....+.+.... ..++|++++.|...+.+..|+.+.+. .+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999977776665533 35799999999999999999997764 4555555444332
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~ 384 (417)
.-..... .+.............+++|+++.+++++|+..|.. +|.|..++++.+. +.++|||+|.|.+...+..
T Consensus 167 ~~~~~~~---n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~ 242 (285)
T KOG4210|consen 167 RRGLRPK---NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKL 242 (285)
T ss_pred ccccccc---chhcccccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhHHH
Confidence 2111000 00001111222334449999999999999999998 6999999999887 6899999999999999988
Q ss_pred HHHhCCceeCCeeeEEeecCCCCCC
Q 014866 385 ALNCSGVVLGSLPIRVSPSKTPVRP 409 (417)
Q Consensus 385 Al~lng~~l~G~~l~V~~a~~~~~~ 409 (417)
++..+...+.|+++.+....+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 243 ALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred HhhcccCcccCcccccccCCCCccc
Confidence 8877778999999999998876443
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=3.6e-09 Score=111.86 Aligned_cols=162 Identities=17% Similarity=0.251 Sum_probs=133.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...+++||+|||+..+++.+|+..|..+|.|.+|.|.... ++..-||||.|.+...+-.|.. +.+..|..-.+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3457889999999999999999999999999999987653 3445699999999999999886 8888876555555553
Q ss_pred CCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHH
Q 014866 306 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~A 385 (417)
.. .....+.+++++|+..+....|...|..| |.|..|.+-. | .-||+|.|.+...|+.|
T Consensus 449 ~~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~f-Gpir~Idy~h--g--q~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 449 QP----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF-GPIRIIDYRH--G--QPYAYIQYESPPAAQAA 507 (975)
T ss_pred cc----------------ccccceeeccCCCCCCChHHHHHHHhhcc-Ccceeeeccc--C--CcceeeecccCccchhh
Confidence 11 12234789999999999999999999995 9999987743 3 33999999999999999
Q ss_pred HH-hCCceeCC--eeeEEeecCCCCCCC
Q 014866 386 LN-CSGVVLGS--LPIRVSPSKTPVRPR 410 (417)
Q Consensus 386 l~-lng~~l~G--~~l~V~~a~~~~~~~ 410 (417)
+. |-|..|+| ++|.|.++.++-.+.
T Consensus 508 ~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HHHHhcCcCCCCCcccccccccCCCCCh
Confidence 99 99999977 689999998775443
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.78 E-value=6.4e-09 Score=95.80 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=119.6
Q ss_pred EEEcCCCCCCcHHH-H--HHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 234 VYVSDIDQQVTEEQ-L--AALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 234 lfV~nLp~~~te~~-L--~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
.+++++-..+..+- | ...|+.|-.+....++++.. .-++++|+.|.....-.++-. -+++.++-.++++.-...-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45555555554443 3 56777776666677777654 347899999988777777665 6777777776665543211
Q ss_pred CCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHH
Q 014866 309 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAAL 386 (417)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al 386 (417)
..+. ..+-......||++.|..+++++-|...|.+| -.....++++|. |+++||+||.|.++.++..|+
T Consensus 179 edPs--------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf-psf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 179 EDPS--------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF-PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred CCcc--------cccCccccceeecccccccccHHHHHHHHHhc-cchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 1111 01112234789999999999999999999995 888888999987 899999999999999999999
Q ss_pred H-hCCceeCCeeeEEeec
Q 014866 387 N-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 387 ~-lng~~l~G~~l~V~~a 403 (417)
. |||..++.++|++.-+
T Consensus 250 rem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 250 REMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HhhcccccccchhHhhhh
Confidence 8 9999999999987654
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=90.84 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=72.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
...+++..+|..+.+.++..+|.+|.|.+..+++.++. |+++|||||+|++.+.|.-|-+ ||+..|.|+.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 46789999999999999999999976899999998876 8999999999999999999999 99999999999999876
Q ss_pred CC
Q 014866 405 TP 406 (417)
Q Consensus 405 ~~ 406 (417)
|-
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.6e-08 Score=99.07 Aligned_cols=143 Identities=16% Similarity=0.144 Sum_probs=100.7
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCcc---ccccccccCcccccCCccchhHHH
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGF---FANNSLIFNNHNARNGNVNANAAV 204 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~g---yafV~~F~~~~~~~~~~~~A~~~a 204 (417)
|.+|||+||++++| |...|..||.+. |.++..... . .....+| |.|+- |.++. .. ...
T Consensus 260 ~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~-~------~~~ppkGs~~Yvflv-Fe~E~-------sV-~~L 322 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANS-R------GRAPPKGSYGYVFLV-FEDER-------SV-QSL 322 (520)
T ss_pred cceeecCCCccccHHHHHhhcccccceE-eecCCCccc-c------ccCCCCCcccEEEEE-ecchH-------HH-HHH
Confidence 77899999999998 999999999985 455642111 1 1223445 99998 99986 22 221
Q ss_pred Hh-----hccc-C----C---Ccc--ccccccch------hhccCCCCcEEEEcCCCCCCcHHHHHHHHh-cCCCeeEEE
Q 014866 205 RR-----KKSF-G----Q---GKR--RMNSRTSL------AQREEIIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCR 262 (417)
Q Consensus 205 ~~-----~~~~-~----~---gk~--~~~~r~~~------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~ 262 (417)
+. ..++ . . .+. .+.+++.. ....-...+|||||+||.-++.++|..+|. -||.|..+-
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaG 402 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVG 402 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEE
Confidence 11 1111 0 0 110 00122211 123345688999999999999999999999 799999999
Q ss_pred EecCCC-C-CceEEEEEecCHHHHHHHHH
Q 014866 263 ICGDPN-S-VLRFAFIEFTDEEGARAALN 289 (417)
Q Consensus 263 i~~d~~-~-skG~aFV~F~~~e~A~~Al~ 289 (417)
|-.|++ + ++|-|-|+|.+..+-.+||.
T Consensus 403 IDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 403 IDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred eccCcccCCCCCcceeeecccHHHHHHHh
Confidence 988854 3 79999999999999999997
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=2.6e-08 Score=95.58 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH--hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN--LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~--lng~~i~g~~l~V~~s 305 (417)
+....+||||+|-..++|.+|+++|-+||+|.++.+.... |+|||+|.+.++|+.|.+ +|...|.|++|.|.|+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3456789999999999999999999999999999998765 599999999999999996 8877899999999998
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 65
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=3.7e-08 Score=104.39 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=115.7
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.|++|+|||+..+++ |+..|..+|.|.+|.|-+-.. +. ...||||. |.+.. .+ -.|..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~----------esa~~f~~-~~n~d-------mt-p~ak~ 431 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KT----------ESAYAFVS-LLNTD-------MT-PSAKF 431 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-Cc----------ccchhhhh-hhccc-------cC-cccch
Confidence 488999999999988 999999999999998766543 33 55889999 99886 33 33333
Q ss_pred hcccC-CCccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHH
Q 014866 207 KKSFG-QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGAR 285 (417)
Q Consensus 207 ~~~~~-~gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~ 285 (417)
.+... .|.-. +++...+......+.+|+++|+..+....|...|..||.|..|.+-... -|+||.|++...++
T Consensus 432 e~s~~~I~~g~--~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq 505 (975)
T KOG0112|consen 432 EESGPLIGNGT--HRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQ 505 (975)
T ss_pred hhcCCccccCc--ccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccch
Confidence 32221 11111 1222222234567789999999999999999999999999987765433 49999999999999
Q ss_pred HHHH-hcCcccCC--cceEEccCCCC
Q 014866 286 AALN-LAGTMLGF--YPVRVLPSKTA 308 (417)
Q Consensus 286 ~Al~-lng~~i~g--~~l~V~~s~~~ 308 (417)
.|+. |-|..|+| +.+.|.++...
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccCC
Confidence 9998 99999975 67888887543
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.4e-08 Score=95.76 Aligned_cols=78 Identities=24% Similarity=0.467 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
.+...|||.-|.+-+|+++|.-+|+.||.|.+|.+++|..+ +..||||+|.+.+++++|.- |++..|..+.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45678999999999999999999999999999999999875 68899999999999999996 9999999999999886
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 3
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.5e-08 Score=94.71 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=73.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
++.+.|||--|.+-++++||.-+|+.| |.|.+|.+++|. |.+-.||||+|++.+++++|.- |++..|.+++|.|.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrF-G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRF-GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhc-ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 456899999999999999999999995 999999999997 6788899999999999999997 999999999999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
++.-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8654
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.66 E-value=4.2e-08 Score=102.41 Aligned_cols=77 Identities=29% Similarity=0.440 Sum_probs=70.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..++||||++|+..+++.||.++|+. ||.|.+|.+.. ++|+|||.+.+..+|.+|+. |+...+.++.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHh-cccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 45799999999999999999999999 59999999864 57799999999999999998 99999999999999997
Q ss_pred CCC
Q 014866 405 TPV 407 (417)
Q Consensus 405 ~~~ 407 (417)
...
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 653
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.64 E-value=6.6e-08 Score=93.58 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=118.9
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
..+.|+|++...+.+ ...+|..+|....+.+........ ++||+++. |...+ .+ ..++.
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~----------sk~~~s~~-f~~ks-------~~-~~~l~ 148 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLS----------SKGGLSVH-FAGKS-------QF-FAALE 148 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccc----------cccceeec-cccHH-------HH-HHHHH
Confidence 456899999999988 888889999998888777666666 99999999 99987 44 44444
Q ss_pred hccc-CC----Ccccccc-cc-----chhhccCCCCcEEE-EcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--Cce
Q 014866 207 KKSF-GQ----GKRRMNS-RT-----SLAQREEIIRRTVY-VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLR 272 (417)
Q Consensus 207 ~~~~-~~----gk~~~~~-r~-----~~~~~~~~~~~~lf-V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG 272 (417)
.... .. +...++- +. ...........++| |+||+.++++++|+.+|..+|.|..+++..+..+ .+|
T Consensus 149 ~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg 228 (285)
T KOG4210|consen 149 ESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKG 228 (285)
T ss_pred hhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhh
Confidence 3321 11 1111100 01 01111223344555 9999999999999999999999999999988764 599
Q ss_pred EEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 273 FAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 273 ~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
||||.|.....+..++..+...+.++++.+....
T Consensus 229 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 229 FAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred hhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 9999999999998888766777899999998864
No 126
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.62 E-value=6.9e-08 Score=100.86 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
..++|||||+|+.++++.+|..+|+.||+|.+|.++.. +|+|||.+....+|.+|+. |+...+.++.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 45789999999999999999999999999999999764 4799999999999999998 99999999999999984
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.61 E-value=8.3e-08 Score=86.19 Aligned_cols=77 Identities=25% Similarity=0.322 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC-CCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
.....+||..+|..+.+.++..+|.+| |.+..+++-+++.+ |+|||||+|++++.|.-|-+ ||+..|.|+-|.|..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345569999999999999999999988 78888888787754 79999999999999999998 999999999998877
Q ss_pred C
Q 014866 305 S 305 (417)
Q Consensus 305 s 305 (417)
-
T Consensus 127 m 127 (214)
T KOG4208|consen 127 M 127 (214)
T ss_pred e
Confidence 4
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=2.4e-08 Score=90.17 Aligned_cols=141 Identities=23% Similarity=0.274 Sum_probs=110.9
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.|++||+|+...++| |.|+|-+.|+|..|.|+.++.... + ||||. |.++- .. ..|++
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-----------k-Fa~v~-f~~E~-------sv-~~a~~ 67 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-----------K-FAYVF-FPNEN-------SV-QLAGQ 67 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-----------c-eeeee-ccccc-------ch-hhhhh
Confidence 489999999999998 999999999999999988877663 3 99999 99986 44 77777
Q ss_pred hcccCCCccccccccchhhccCCCCcEEEEcC----CCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCH
Q 014866 207 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSD----IDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDE 281 (417)
Q Consensus 207 ~~~~~~gk~~~~~r~~~~~~~~~~~~~lfV~n----Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~ 281 (417)
.+|... . ......++++.|+ |...++++.+.+.|+.-|++..+++..+.+ .++-++|+.+...
T Consensus 68 L~ng~~--------l----~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 68 LENGDD--------L----EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred hcccch--------h----ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 776632 0 1122456788888 888899999999999999999999988775 4677899999887
Q ss_pred HHHHHHHH-hcCcccCCcceEE
Q 014866 282 EGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 282 e~A~~Al~-lng~~i~g~~l~V 302 (417)
.+.-.++. ..+....-+++.+
T Consensus 136 ~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 136 CAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hcCcHHhhhhcccCcCCCCccc
Confidence 77777776 6665544444333
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=2.5e-07 Score=89.72 Aligned_cols=164 Identities=21% Similarity=0.187 Sum_probs=113.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEec-C-CCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-D-PNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~-d-~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~ 308 (417)
...+..++||+..++.+|..+|+-..-..--+.+. . ...-.|.|.|.|.+.+.-+.|++-+.+.++++.|.|-.+...
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 34567789999999999999998432111111111 1 112248999999999999999998888889999998776432
Q ss_pred CC----C----CCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhc---CCceEEEEEecc-CCCCceEEEEEe
Q 014866 309 IA----P----VNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESV---CGEVYRLRLLGD-YHHSTRIAFVEF 376 (417)
Q Consensus 309 ~~----~----~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f---~G~I~~v~i~~d-~~~~kG~aFV~F 376 (417)
.. + ..+.|.++ ...-.|.+++||+++++.|+.++|.+- -|..+.|-+++. .|+..|-|||.|
T Consensus 140 ~f~~iagg~s~e~~~flsk------~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 140 EFLKIAGGTSNEAAPFLSK------ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred hheEecCCccccCCCCCCc------ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 10 0 01112111 123578889999999999999999632 134556655554 589999999999
Q ss_pred CCHHHHHHHHHhCCceeCCeeeEE
Q 014866 377 VMAESAIAALNCSGVVLGSLPIRV 400 (417)
Q Consensus 377 ~~~e~A~~Al~lng~~l~G~~l~V 400 (417)
...++|+.|+.-|...++-|.|.+
T Consensus 214 a~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999986666666665544
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=1e-07 Score=87.94 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=109.5
Q ss_pred CCCCCCcChHH-----HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 133 GGGDFKRDMRE-----LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 133 ~VgnLp~~~~e-----L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
+++++-.++.. +...|+.+-.+....+.++.-.. -+++||+. |.... |..++-..
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~-----------~~~~~~~~-~k~s~--------a~~k~~~~ 159 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQP-----------IRPEAFES-FKASD--------ALLKAETE 159 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCc-----------cCcccccC-cchhh--------hhhhhccc
Confidence 45555555533 57788888777777777776554 45789998 76653 31222111
Q ss_pred ccc-CCCcc--ccccccchhh----ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEe
Q 014866 208 KSF-GQGKR--RMNSRTSLAQ----REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEF 278 (417)
Q Consensus 208 ~~~-~~gk~--~~~~r~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F 278 (417)
.+. ..|++ ++..-..|.+ ..+...-.||+|.|..+++++.|-..|.+|-.....++++|+.+ ++||+||.|
T Consensus 160 ~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf 239 (290)
T KOG0226|consen 160 KEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSF 239 (290)
T ss_pred cccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeee
Confidence 111 11333 1111122221 22345668999999999999999999999999888999999864 799999999
Q ss_pred cCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 279 TDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 279 ~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
.+..++..|+. |+|..++.++|++..+.+
T Consensus 240 ~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 240 RDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 99999999998 999999999998877643
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=2e-07 Score=94.34 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=74.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||.+|...+...||+++|++ ||.|+-.+++.+. -..++||||++.+.++|.+||+ |+.++|.|+.|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44689999999999999999999999 5999999999875 2468899999999999999999 999999999999999
Q ss_pred cCCCCC
Q 014866 403 SKTPVR 408 (417)
Q Consensus 403 a~~~~~ 408 (417)
++.-+.
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 977653
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.49 E-value=2.7e-07 Score=93.37 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
..++|||.+|+..+...+|+.+|++||.|.-.+++.+..+ -+.||||++.+.++|.+||+ |+...|.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4567999999999999999999999999999999987764 38999999999999999999 99999999999999886
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.7e-07 Score=95.00 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=116.8
Q ss_pred chhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcce
Q 014866 222 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPV 300 (417)
Q Consensus 222 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l 300 (417)
..+.......++|+|-|||.++++++|+.+|+.||+|..|+..+.+ +|.+||+|-+..+|+.|++ |++..+.|+.|
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3333445578899999999999999999999999999997766554 4899999999999999998 99999999998
Q ss_pred EEccCCCCCCC--CCCCCC-----CCCch-hhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEE
Q 014866 301 RVLPSKTAIAP--VNPTFL-----PRTED-EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIA 372 (417)
Q Consensus 301 ~V~~s~~~~~~--~~~~~~-----~~~~~-~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~a 372 (417)
........... ....+. +.... ...-+...+++- |++..+..-++.+|. ++|.+.. +...-.+. .-
T Consensus 143 k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~-~~~~~~~-~~~~~~~h---q~ 216 (549)
T KOG4660|consen 143 KRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISS-VDGSSPG-RETPLLNH---QR 216 (549)
T ss_pred cCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchh-ccCcccc-ccccchhh---hh
Confidence 83221110000 000000 00000 000012234333 888888755566665 5788776 43322222 45
Q ss_pred EEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 014866 373 FVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 373 FV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~ 406 (417)
|++|.+..++..+..-.|..+.+....+.++.+.
T Consensus 217 ~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRGGFLISNSSGVITFSGPG 250 (549)
T ss_pred hhhhccccchhhcccCCceecCCCCceEEecCCC
Confidence 8888888888555552288888888888777653
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.48 E-value=5.3e-07 Score=84.57 Aligned_cols=81 Identities=26% Similarity=0.364 Sum_probs=74.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..+|+|.|||..++++||+++|..| |.++.+-+.++. |.+.|.|-|.|...++|.+|++ +||..++|+.|++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~-~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF-GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh-ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4789999999999999999999995 999999999998 8999999999999999999999 999999999999998766
Q ss_pred CCCC
Q 014866 406 PVRP 409 (417)
Q Consensus 406 ~~~~ 409 (417)
+...
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 6443
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.42 E-value=1.2e-07 Score=92.07 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=126.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC-----CceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~-----skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
..|.|.||.+++|.++++.+|...|.|..++|+..... ....|||.|.+...+..|..|.+..+-++.|.|.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 47999999999999999999999999999999885432 3678999999999999998888888888888776643
Q ss_pred CCCCCCC------------C------CCC-------------------CCCch-----hhccccceEEEeCCCCCCCHHH
Q 014866 307 TAIAPVN------------P------TFL-------------------PRTED-----EREMCARTIYCTNIDKKVTQAD 344 (417)
Q Consensus 307 ~~~~~~~------------~------~~~-------------------~~~~~-----~~~~~~~~l~V~nLp~~~te~d 344 (417)
....+.. + ..+ |..+. .-+...++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2111100 0 000 00000 0023357899999999999999
Q ss_pred HHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 345 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 345 L~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
+.+.|.. ||.|.+..+.-... .-+|.|+|....+...|+.++|..+.-+...+..-
T Consensus 168 ~~e~f~r-~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai~ 223 (479)
T KOG4676|consen 168 SGESFER-KGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAII 223 (479)
T ss_pred hhhhhhh-cchhhhhhhhccCC--CcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhhc
Confidence 9999998 69998887755433 33788999999999999999998877544444333
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.36 E-value=7.9e-07 Score=83.42 Aligned_cols=81 Identities=31% Similarity=0.445 Sum_probs=74.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
......+||+|+.+.+|.+++...|+. ||.|..+.++.|. +.++|||||+|.+.+.+..|+.|||..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 445689999999999999999999998 9999999999987 5799999999999999999999999999999999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8665
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=1.4e-07 Score=99.65 Aligned_cols=140 Identities=17% Similarity=0.023 Sum_probs=115.3
Q ss_pred CCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhc
Q 014866 131 SNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKK 208 (417)
Q Consensus 131 ~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~ 208 (417)
+.||.||++.+.+ |...|..+|.+..+++.-.+..++ -+|+||+. |...+ .+ .+|+...
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~----------~rG~~Y~~-F~~~~-------~~-~aaV~f~ 729 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKR----------FRGKAYVE-FLKPE-------HA-GAAVAFR 729 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccc----------cccceeeE-eecCC-------ch-hhhhhhh
Confidence 4689999999966 999999999999888876777788 88999999 99988 77 5555442
Q ss_pred ccCCCccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHH
Q 014866 209 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAA 287 (417)
Q Consensus 209 ~~~~gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~A 287 (417)
.... .....|+|.|.|+..|.++++.++..+|.+.+.+++..+. .++|.|||.|.++.++..+
T Consensus 730 d~~~----------------~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 730 DSCF----------------FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred hhhh----------------hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhh
Confidence 2211 1145699999999999999999999999999999888775 5799999999999999999
Q ss_pred HH-hcCcccCCcceEEccC
Q 014866 288 LN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 288 l~-lng~~i~g~~l~V~~s 305 (417)
.. .+...+..+.+.|..+
T Consensus 794 ~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 794 VASVDVAGKRENNGEVQVS 812 (881)
T ss_pred cccchhhhhhhcCcccccc
Confidence 87 8777777666666654
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=90.94 Aligned_cols=173 Identities=13% Similarity=0.030 Sum_probs=126.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CC-ceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SV-LRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~s-kG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
.+.+.+-+.+.+++.++.+++++|... .|.++.|..+.- .+ .|-++|.|....++++|++-|...+-.|.+.+.+..
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 345556778999999999999999743 455555555443 22 689999999999999999988888889999887753
Q ss_pred CCCCCCCCC------------------CCCCCch-------hhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEE-EE
Q 014866 307 TAIAPVNPT------------------FLPRTED-------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LR 360 (417)
Q Consensus 307 ~~~~~~~~~------------------~~~~~~~-------~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~-v~ 360 (417)
...-...+. ..++... -....+.+|||..||..+++.++.++|... -.|++ |.
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~-~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA-AAVEDFIE 466 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh-hhhhheeE
Confidence 211000000 0011000 012236799999999999999999999986 45554 77
Q ss_pred EeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 361 LLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 361 i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
|.+.+ +..++-|||.|..++++..|.. -+.+.++.+.|+|...
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 77766 6788899999999999999988 6677788888988754
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.29 E-value=1.4e-06 Score=90.35 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCcccCCcceE
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 301 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~ 301 (417)
+....+|||+||++.++++.|...|..||+|.+++|+.... ..+-+|||.|-+..+|++|++ |+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34567899999999999999999999999999999987542 246699999999999999998 999999999999
Q ss_pred EccCCCCC
Q 014866 302 VLPSKTAI 309 (417)
Q Consensus 302 V~~s~~~~ 309 (417)
+.|++.-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986543
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.28 E-value=1.7e-06 Score=87.43 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=69.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
..+|||+|||.+++..+|+++|..| |.|+...|.... +...+||||+|.+.+++..|++-+-..++|++|.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F-G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF-GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc-ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 3569999999999999999999995 999999887744 4444899999999999999999778999999999998877
Q ss_pred CCC
Q 014866 406 PVR 408 (417)
Q Consensus 406 ~~~ 408 (417)
..+
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 543
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.28 E-value=2.6e-06 Score=88.54 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=73.6
Q ss_pred hccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-----CCCceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 014866 324 REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 397 (417)
Q Consensus 324 ~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-----~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~ 397 (417)
.++.+++|||+||++.++++.|...|+.| |.|.+++|+--. ...+.+|||-|-+..+|++|++ |+|..+.+..
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrf-gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRF-GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhccc-CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 35567899999999999999999999995 999999988532 2456699999999999999999 9999999999
Q ss_pred eEEeecCCCCC
Q 014866 398 IRVSPSKTPVR 408 (417)
Q Consensus 398 l~V~~a~~~~~ 408 (417)
+++.|+++-+-
T Consensus 249 ~K~gWgk~V~i 259 (877)
T KOG0151|consen 249 MKLGWGKAVPI 259 (877)
T ss_pred eeecccccccc
Confidence 99999965543
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=1.3e-06 Score=81.98 Aligned_cols=83 Identities=24% Similarity=0.348 Sum_probs=75.6
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
....+.+.+||+|+.+.+|.+++..+|+.||.|..+.+..|+.. ++||+||+|.+.+.+..|+.|||..+.|+.+.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 44567789999999999999999999999999999999988754 6999999999999999999999999999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87665
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.25 E-value=1.5e-06 Score=87.83 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
..+|||+|||.+++.++|+++|..||.|....|.... .+..+||||+|.+.+++..|+.-+-..+++++|.|+.-+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 3449999999999999999999999999987776533 3333899999999999999999777889999999987654
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.24 E-value=3.2e-06 Score=79.39 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....+|+|.|||+.+++++|+++|..||.+..+-+..++. .+.|.|-|.|...++|..|++ ++|..+.|++|.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3446799999999999999999999999999999999886 478999999999999999999 99999999999887653
No 145
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.23 E-value=3.3e-06 Score=81.26 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=71.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceE--------EEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 397 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~--------~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~ 397 (417)
...|||.|||..+|.+++.++|++ ||.|. .|+|.++. |..+|-|.+.|--.++..-|++ |++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 467999999999999999999999 79775 57888887 8999999999999999999999 9999999999
Q ss_pred eEEeecCCC
Q 014866 398 IRVSPSKTP 406 (417)
Q Consensus 398 l~V~~a~~~ 406 (417)
|+|+.|+-.
T Consensus 213 ~rVerAkfq 221 (382)
T KOG1548|consen 213 LRVERAKFQ 221 (382)
T ss_pred EEEehhhhh
Confidence 999998644
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.16 E-value=1.6e-05 Score=64.24 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=64.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhh-cCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeC----CeeeEE
Q 014866 329 RTIYCTNIDKKVTQADVKLFFES-VCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG----SLPIRV 400 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~-f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~----G~~l~V 400 (417)
+||.|+|||...|.++|.+++.. +.|...-+.++.|. +.+.|||||.|.+++.|.+-.+ ++|.... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998875 34677777787775 5789999999999999999998 9997764 556788
Q ss_pred eecCCC
Q 014866 401 SPSKTP 406 (417)
Q Consensus 401 ~~a~~~ 406 (417)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887644
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=2.3e-06 Score=86.97 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=66.3
Q ss_pred chhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 014866 321 EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 399 (417)
Q Consensus 321 ~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~ 399 (417)
+.+...+.++|+|-|||..+++++|+.+|+. ||+|..|+.-+. .+|..||+|-|..+|++|++ |++.++.|+.|+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3444566799999999999999999999998 699999776543 46799999999999999999 999999999998
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.14 E-value=2.5e-07 Score=90.72 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=115.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcc-cCCcceEEccCCCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM-LGFYPVRVLPSKTAI 309 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~-i~g~~l~V~~s~~~~ 309 (417)
..+|++||.+.++..+|+.+|...-.-.+-.++. ..||+||.+.+...|.+|++ ++|.. +.|.++.+..+-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~-- 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP-- 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh--
Confidence 3689999999999999999998431111111111 13899999999999999999 88865 7899999887631
Q ss_pred CCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEec-cCCCCceEEEEEeCCHHHHHHHHH-
Q 014866 310 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG-DYHHSTRIAFVEFVMAESAIAALN- 387 (417)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~-d~~~~kG~aFV~F~~~e~A~~Al~- 387 (417)
... .++.+-|+|+|+..-++-|..+... ||.+..|.... +.. .-..-|+|.+.+.+..|+.
T Consensus 76 ---------kkq-----rsrk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~k 138 (584)
T KOG2193|consen 76 ---------KKQ-----RSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHK 138 (584)
T ss_pred ---------HHH-----HhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHh
Confidence 111 1366889999999999999999998 79999996543 322 1234578889999999999
Q ss_pred hCCceeCCeeeEEeec
Q 014866 388 CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 388 lng~~l~G~~l~V~~a 403 (417)
|+|..+....++|.|-
T Consensus 139 l~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 139 LNGPQLENQHLKVGYI 154 (584)
T ss_pred hcchHhhhhhhhcccC
Confidence 9999999999999985
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=2.4e-05 Score=60.72 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=47.2
Q ss_pred ceEEEeCCCCCCCHH----HHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 329 RTIYCTNIDKKVTQA----DVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 329 ~~l~V~nLp~~~te~----dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
..|+|.|||...+.. .|++++.. || .|.+|. .|.|+|.|.+.+.|.+|.+ |+|..+.|+.|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 579999999987765 56677777 67 777662 3489999999999999999 999999999999999
Q ss_pred cC
Q 014866 403 SK 404 (417)
Q Consensus 403 a~ 404 (417)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 83
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.93 E-value=6.7e-05 Score=60.69 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=61.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc--CCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccC----CcceEE
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVG--CGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLG----FYPVRV 302 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~--~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~----g~~l~V 302 (417)
.||.|+|||...|.++|.+++.. .|...-+.++.|-. .+.|||||.|.+++.|....+ ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998874 36667778887765 469999999999999999998 9998874 345566
Q ss_pred ccCC
Q 014866 303 LPSK 306 (417)
Q Consensus 303 ~~s~ 306 (417)
.+++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.61 E-value=0.0002 Score=58.96 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-h--C---CceeCCeeeEEe
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C--S---GVVLGSLPIRVS 401 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-l--n---g~~l~G~~l~V~ 401 (417)
..|+|.+++..++.++|++.|++ ||.|.+|.+.+... .|+|.|.+.++|+.|+. + . +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46889999999999999999999 59999999976543 79999999999999997 3 3 356666665554
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.57 E-value=0.00026 Score=55.01 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=46.4
Q ss_pred cEEEEcCCCCCCcHHHH----HHHHhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 232 RTVYVSDIDQQVTEEQL----AALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L----~~~F~~~G-~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
..|||.|||.+.+...| +.++..|| .|.+|. .+.|+|.|.+.+.|.+|.+ |+|..+.|+.|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 35999999999887655 45666786 666652 1589999999999999999 9999999999999997
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.41 E-value=0.0006 Score=56.18 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=36.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 289 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~ 289 (417)
..|+|.+++..++.++|++.|+.||.|..|.+.+... -|||.|.+.+.|+.|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHH
Confidence 3588999999999999999999999999999987554 79999999999999997
No 154
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.24 E-value=0.00084 Score=70.19 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=64.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCce-EEEEEecc-CCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I-~~v~i~~d-~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.+.|-+.|+|++++-+||.++|.. |-.+ -+|.+.++ .|..+|-|.|-|++.++|.+|.. |+++.|..+.|.+.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~d-Y~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFND-YEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcc-cccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 458899999999999999999998 4433 46666664 48999999999999999999998 999999999998864
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.22 E-value=0.0022 Score=52.18 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=53.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEE-Eecc-------C-CCCceEEEEEeCCHHHHHHHHHhCCceeCCe-e
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGD-------Y-HHSTRIAFVEFVMAESAIAALNCSGVVLGSL-P 397 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~-i~~d-------~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~-~ 397 (417)
...|.|-+.|+. ....|.+.|++ ||.|.+.. +.++ + .....+-.|+|+++.+|.+||..||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 367889999988 56788899999 59998875 1111 1 1223499999999999999999999999986 4
Q ss_pred eEEeecCCC
Q 014866 398 IRVSPSKTP 406 (417)
Q Consensus 398 l~V~~a~~~ 406 (417)
+-|.+.++.
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 557776543
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.18 E-value=0.00079 Score=64.85 Aligned_cols=76 Identities=16% Similarity=0.350 Sum_probs=62.3
Q ss_pred ceEEEeCCCCCCCHHHH------HHHHhhcCCceEEEEEeccC---CCCceE--EEEEeCCHHHHHHHHH-hCCceeCCe
Q 014866 329 RTIYCTNIDKKVTQADV------KLFFESVCGEVYRLRLLGDY---HHSTRI--AFVEFVMAESAIAALN-CSGVVLGSL 396 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL------~~~F~~f~G~I~~v~i~~d~---~~~kG~--aFV~F~~~e~A~~Al~-lng~~l~G~ 396 (417)
.-+||-+||+.+..+++ .++|++ ||.|..|.+-+.. +...+. .||+|.+.++|.+||. .+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 57899999998877762 379999 6999999987753 222332 3999999999999998 999999999
Q ss_pred eeEEeecCC
Q 014866 397 PIRVSPSKT 405 (417)
Q Consensus 397 ~l~V~~a~~ 405 (417)
.|+..+..+
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998754
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.18 E-value=0.00099 Score=47.77 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 288 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al 288 (417)
+.|-|.+.+.+..+. +..+|..||+|..+.+..... +.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc----EEEEEECCHHHHHhhC
Confidence 467888888776654 555899999999988874343 8999999999999985
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.18 E-value=0.00036 Score=67.98 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=69.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceE--------EEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS 395 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~--------~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G 395 (417)
...+|||-+||..+++.+|.++|.+ ||.|. .|.|.++. +.++|-|.|.|.+...|+.|+. +++..+.|
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3579999999999999999999998 79874 34455554 6799999999999999999999 99999999
Q ss_pred eeeEEeecCCC
Q 014866 396 LPIRVSPSKTP 406 (417)
Q Consensus 396 ~~l~V~~a~~~ 406 (417)
.+|+|.+|...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999998654
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.09 E-value=0.00052 Score=66.85 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE--------EEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG 296 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~ 296 (417)
.....+|||-+||..+++++|.++|.+||.|.. |.+.+++.+ ++|-|.|.|.+...|+.|+. +++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345678999999999999999999999997743 566666654 69999999999999999999 9999999
Q ss_pred CcceEEccCC
Q 014866 297 FYPVRVLPSK 306 (417)
Q Consensus 297 g~~l~V~~s~ 306 (417)
|.+|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999998874
No 160
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.00 E-value=7.6e-05 Score=73.65 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=104.8
Q ss_pred CCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhhc
Q 014866 131 SNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKK 208 (417)
Q Consensus 131 ~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~ 208 (417)
.+|+|||.+.++- |..+|... .++-++.-- .--||+||+ ..+.. -| -+|++.+
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~~~~g~fl----------~k~gyafvd-~pdq~-------wa-~kaie~~ 57 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFL----------VKSGYAFVD-CPDQQ-------WA-NKAIETL 57 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cCCCCccee----------eecceeecc-CCchh-------hh-hhhHHhh
Confidence 4789999998865 99999875 112221111 144999999 88876 56 6777777
Q ss_pred ccCC---CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEec-CCCCCceEEEEEecCHHHH
Q 014866 209 SFGQ---GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEEGA 284 (417)
Q Consensus 209 ~~~~---gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~-d~~~skG~aFV~F~~~e~A 284 (417)
+... |++ ..+...-.....++.+-|.|+|+..-.+.|..++..||.++.|..+. +..+ -.--|+|...+.+
T Consensus 58 sgk~elqGkr---~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~~ 132 (584)
T KOG2193|consen 58 SGKVELQGKR---QEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQH 132 (584)
T ss_pred chhhhhcCce---eeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHHH
Confidence 6542 666 33332222223456799999999999999999999999999987754 2221 2344788899999
Q ss_pred HHHHH-hcCcccCCcceEEccC
Q 014866 285 RAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 285 ~~Al~-lng~~i~g~~l~V~~s 305 (417)
..||. ++|..+....+++.+-
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccC
Confidence 99998 9999999888888774
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.98 E-value=0.0031 Score=51.33 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEE-EecC-------C-CCCceEEEEEecCHHHHHHHHHhcCcccCCcce
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-ICGD-------P-NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPV 300 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~-i~~d-------~-~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l 300 (417)
....|.|-+.|+. ....|.+.|++||.|.+.. +.++ + .....+-.|+|.++.+|.+||..||..+.|.-|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456888899998 5566778899999998774 1111 0 012348999999999999999999999988644
Q ss_pred -EEccC
Q 014866 301 -RVLPS 305 (417)
Q Consensus 301 -~V~~s 305 (417)
-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 46664
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.93 E-value=0.0026 Score=45.57 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=42.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHH
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 386 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al 386 (417)
+.|-|.|.++... +.+...|.. ||+|..+.+....+ +.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~-fGeI~~~~~~~~~~----~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFAS-FGEIVDIYVPESTN----WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHh-cCCEEEEEcCCCCc----EEEEEECCHHHHHhhC
Confidence 5788999997765 456668888 59999999873333 8999999999999985
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.82 E-value=0.0028 Score=63.08 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=55.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc---C----CC--------CceEEEEEeCCHHHHHHHHH-h
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---Y----HH--------STRIAFVEFVMAESAIAALN-C 388 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d---~----~~--------~kG~aFV~F~~~e~A~~Al~-l 388 (417)
+.+.++|.+-|||.+-..+.|.++|+. ||.|..|+|+.- + +. .+-+|+|+|+..+.|.+|.+ |
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 346799999999999888999999999 599999999864 2 11 24589999999999999999 6
Q ss_pred CCc
Q 014866 389 SGV 391 (417)
Q Consensus 389 ng~ 391 (417)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 443
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=0.0028 Score=59.18 Aligned_cols=100 Identities=25% Similarity=0.279 Sum_probs=81.4
Q ss_pred HHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEE
Q 014866 283 GARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 361 (417)
Q Consensus 283 ~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i 361 (417)
-|..|-. |++....|+.++|.++. ...|||.||..-++.+.+.+.|+.| |.|....+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~---------------------~a~l~V~nl~~~~sndll~~~f~~f-g~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM---------------------HAELYVVNLMQGASNDLLEQAFRRF-GPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec---------------------cceEEEEecchhhhhHHHHHhhhhc-Cccchhee
Confidence 4566665 99999999999999963 1579999999999999999999995 99998888
Q ss_pred eccC-CCCceEEEEEeCCHHHHHHHHH-h--CC--ceeCCeeeEEeecC
Q 014866 362 LGDY-HHSTRIAFVEFVMAESAIAALN-C--SG--VVLGSLPIRVSPSK 404 (417)
Q Consensus 362 ~~d~-~~~kG~aFV~F~~~e~A~~Al~-l--ng--~~l~G~~l~V~~a~ 404 (417)
..|. +++.|-++|+|...-.|.+|+. + .| ....+++.-|....
T Consensus 64 ~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 64 KVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred eecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 7776 8888999999999999988887 4 33 34566666665543
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.66 E-value=0.0039 Score=60.20 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCcHHHH------HHHHhcCCCeeEEEEecCCC---CCce-E-EEEEecCHHHHHHHHH-hcCcccCCcc
Q 014866 232 RTVYVSDIDQQVTEEQL------AALFVGCGQVVDCRICGDPN---SVLR-F-AFIEFTDEEGARAALN-LAGTMLGFYP 299 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L------~~~F~~~G~I~~v~i~~d~~---~skG-~-aFV~F~~~e~A~~Al~-lng~~i~g~~ 299 (417)
.-+||-+||+.+-.++. .++|.+||.|..|.+-+... +-.+ + .||+|.+.++|.+||. .+|..++|+-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 44999999988776662 48999999999987765431 1123 2 3999999999999998 9999999999
Q ss_pred eEEccCCC
Q 014866 300 VRVLPSKT 307 (417)
Q Consensus 300 l~V~~s~~ 307 (417)
|+..+..+
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99988643
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0035 Score=64.30 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=60.3
Q ss_pred cceEEEeCCCCCCC------HHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeC-Ceee
Q 014866 328 ARTIYCTNIDKKVT------QADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPI 398 (417)
Q Consensus 328 ~~~l~V~nLp~~~t------e~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~-G~~l 398 (417)
...|+|-|+|.--. ..-|..+|++ +|+|..+.++.+. |.++||.|++|.+..+|+.|++ |||+.|. .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 47889999986321 2345678999 4999999999887 7899999999999999999999 9998775 4566
Q ss_pred EEeec
Q 014866 399 RVSPS 403 (417)
Q Consensus 399 ~V~~a 403 (417)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66543
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.62 E-value=0.0062 Score=57.84 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=58.7
Q ss_pred cceEEEeCCC--CCCC---HHHHHHHHhhcCCceEEEEEeccCCCC---ceEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 014866 328 ARTIYCTNID--KKVT---QADVKLFFESVCGEVYRLRLLGDYHHS---TRIAFVEFVMAESAIAALN-CSGVVLGSLPI 398 (417)
Q Consensus 328 ~~~l~V~nLp--~~~t---e~dL~~~F~~f~G~I~~v~i~~d~~~~---kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l 398 (417)
++.|.++|+- ..++ ++++.+.+++ ||.|..|.|.-.++.+ .---||+|...++|.+|+- |||..|+||.+
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3446666652 2333 4678889999 7999999988776422 1247999999999999997 99999999999
Q ss_pred EEeecCC
Q 014866 399 RVSPSKT 405 (417)
Q Consensus 399 ~V~~a~~ 405 (417)
...|.+-
T Consensus 360 ~A~Fyn~ 366 (378)
T KOG1996|consen 360 SACFYNL 366 (378)
T ss_pred eheeccH
Confidence 9887653
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.51 E-value=0.0089 Score=51.71 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 014866 344 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 344 dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~ 406 (417)
+|.+.|.. ||.+.-+++.-+ .-.|+|.+-++|.+|+.|+|..++|+.|+|....|.
T Consensus 52 ~ll~~~~~-~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQ-YGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHC-CS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHh-CCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 67778888 699998888754 469999999999999999999999999999987654
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.27 E-value=0.0029 Score=59.05 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC----------Cce----EEEEEecCHHHHHHHHH-hcCcc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----------VLR----FAFIEFTDEEGARAALN-LAGTM 294 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----------skG----~aFV~F~~~e~A~~Al~-lng~~ 294 (417)
....||+++||+.+...-|+++|+.||.|-.|.+-+.... +.+ -|.|+|.+...|..+-. ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999988764322 111 27899999999999887 99999
Q ss_pred cCCcc
Q 014866 295 LGFYP 299 (417)
Q Consensus 295 i~g~~ 299 (417)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 170
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.21 E-value=0.0076 Score=59.38 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=65.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC-----CCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~-----~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
..|.|.||.++++.++++.||..+ |.|..+.|++..+ .....|||.|.+...+..|..|..+.|=|+.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l-GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL-GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc-cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 489999999999999999999975 9999999998542 3445999999999999999888888888888877765
Q ss_pred CCC
Q 014866 404 KTP 406 (417)
Q Consensus 404 ~~~ 406 (417)
-..
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 433
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.11 E-value=0.017 Score=49.93 Aligned_cols=54 Identities=30% Similarity=0.431 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 247 QLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 247 ~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
+|.+.|..||++.-+++..+ --+|+|.+-++|.+|+.++|..++|+.|+|....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 67788999999998988875 3699999999999999999999999999998853
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.016 Score=59.63 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=60.9
Q ss_pred CCCcEEEEcCCCCCCc--H----HHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccC-Ccc
Q 014866 229 IIRRTVYVSDIDQQVT--E----EQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLG-FYP 299 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~t--e----~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~-g~~ 299 (417)
.....|+|-|+|---. - .-|..+|+++|++....++.+.. +.+||.|++|.+..+|+.|++ +||..+. .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4556799999985322 2 34568999999999999987765 469999999999999999998 9999875 666
Q ss_pred eEEcc
Q 014866 300 VRVLP 304 (417)
Q Consensus 300 l~V~~ 304 (417)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.01 E-value=0.0061 Score=59.16 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...+|||||-|.+|++||.+.+...| .+.++++..+.. .++|||+|...+..+..+.++ |-...|.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35699999999999999999998877 677777777654 589999999999999999999 8888898886666543
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.86 E-value=0.0054 Score=57.30 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=58.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC----------CCc----eEEEEEeCCHHHHHHHHH-hCCc
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH----------HST----RIAFVEFVMAESAIAALN-CSGV 391 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~----------~~k----G~aFV~F~~~e~A~~Al~-lng~ 391 (417)
....||+++||+.+.-..|+++|+. ||.|-.|.+.+... ..+ --|.|+|.+...|..+.. ||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999 69999999987431 111 147899999999998888 9999
Q ss_pred eeCCee
Q 014866 392 VLGSLP 397 (417)
Q Consensus 392 ~l~G~~ 397 (417)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.85 E-value=0.0095 Score=59.42 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=55.7
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecC---CCC------------CceEEEEEecCHHHHHHHHHh
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---PNS------------VLRFAFIEFTDEEGARAALNL 290 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~~------------skG~aFV~F~~~e~A~~Al~l 290 (417)
.++-..++|.+-|||.+-.-+-|.++|..+|.|..|+|+.- +.. .+-+|+|+|...+.|.+|.++
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33457899999999999999999999999999999999875 211 145799999999999999994
Q ss_pred c
Q 014866 291 A 291 (417)
Q Consensus 291 n 291 (417)
.
T Consensus 306 ~ 306 (484)
T KOG1855|consen 306 L 306 (484)
T ss_pred h
Confidence 3
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.84 E-value=0.0038 Score=58.36 Aligned_cols=62 Identities=27% Similarity=0.291 Sum_probs=51.4
Q ss_pred HHHHHHHh-hcCCceEEEEEeccCC-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 343 ADVKLFFE-SVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 343 ~dL~~~F~-~f~G~I~~v~i~~d~~-~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
+||...|+ + ||+|+.+.|..+-+ .-+|-++|.|...++|++|++ ||+..+.|++|...+..-
T Consensus 83 Ed~f~E~~~k-ygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDK-YGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHH-hhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 5 79999998876653 567889999999999999999 999999999999998743
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.71 E-value=0.0053 Score=57.43 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=50.1
Q ss_pred HHHHHHHh-cCCCeeEEEEecCCCC-CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 246 EQLAALFV-GCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 246 ~~L~~~F~-~~G~I~~v~i~~d~~~-skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
++|...|+ +||+|+++.+..+..- -.|-.||.|...++|++|++ ||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 8999999987765543 37899999999999999999 99999999999988863
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.55 E-value=0.059 Score=42.07 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA 291 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-ln 291 (417)
.....||+ .|..+...||.++|+.||.|. |..+.|. -|||.....+.|..|+. +.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 34556776 999999999999999999875 6777765 59999999999999987 54
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.15 E-value=0.02 Score=55.73 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=62.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G--~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.-++||+||-.-+|++||.+..... | .+..++++.+. |.++|||.|...+..+.++-|+ |-.+.|.|+.-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3689999999999999999988874 7 56677776654 7999999999999998899999 999999998655544
Q ss_pred c
Q 014866 403 S 403 (417)
Q Consensus 403 a 403 (417)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.47 E-value=0.19 Score=37.08 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=43.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcC---CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGC---GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 289 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~ 289 (417)
..|+|.|+. +++.++|+.+|..| .....|.++.|.. |-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-----cNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-----CNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-----EEEEECCHHHHHHHHH
Confidence 469999995 48889999999988 2356788888874 8899999999999986
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.17 E-value=0.035 Score=57.57 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=61.3
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCcee---CCeeeEE
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL---GSLPIRV 400 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l---~G~~l~V 400 (417)
...++.|||.||-.-.|.-+|+.++.+.+|.|....| |+ -+..|||.|.+.++|.+... |||... +++.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4457899999999999999999999976677777633 32 23479999999999999998 999644 6778888
Q ss_pred eecC
Q 014866 401 SPSK 404 (417)
Q Consensus 401 ~~a~ 404 (417)
.|+.
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 8864
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.13 E-value=0.42 Score=39.65 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=51.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 395 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G 395 (417)
..+.+...|.-++-++|..+.+++...|..++|.+|....+-.+.++|.+.++|..-.. .||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444455555666677766666555889999999886678799999999999999888 99987754
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.03 E-value=0.24 Score=42.60 Aligned_cols=75 Identities=19% Similarity=0.082 Sum_probs=55.4
Q ss_pred ccccceEEEeCCCCCC----CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 014866 325 EMCARTIYCTNIDKKV----TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 399 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~----te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~ 399 (417)
+++..+|.|+=|..++ +-..+....+.| |.|.+|.+. .+-.|.|.|.+..+|.+|+. ++. ...|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~f-GpI~SVT~c-----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF-GPIQSVTLC-----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhc-CCcceeeec-----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 4566788886655543 333444556665 999999875 23479999999999999998 655 67888999
Q ss_pred EeecCCC
Q 014866 400 VSPSKTP 406 (417)
Q Consensus 400 V~~a~~~ 406 (417)
+.|-..=
T Consensus 156 CsWqqrF 162 (166)
T PF15023_consen 156 CSWQQRF 162 (166)
T ss_pred eeccccc
Confidence 9997643
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.77 E-value=0.39 Score=35.48 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 387 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G--~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~ 387 (417)
..|+|+|+. +++.+||+.+|..+|. ....|.-+-|. -|-|.|.+.+.|.+|+.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 589999996 5889999999998422 45566665554 48999999999999986
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.65 E-value=0.17 Score=48.40 Aligned_cols=61 Identities=25% Similarity=0.195 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCCC---ceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 245 EEQLAALFVGCGQVVDCRICGDPNSV---LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 245 e~~L~~~F~~~G~I~~v~i~~d~~~s---kG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
++++.+...+||.|..|.|..+++.. .---||+|...++|.+|+- |||..|+|+.+...+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35677888899999999988876532 2247999999999999997 9999999999887664
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.33 E-value=0.42 Score=37.37 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=38.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 389 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-ln 389 (417)
...+|. .|.++...||.++|++| |.|.---| -| .-|||...+.+.|..|+. ++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf-G~I~VsWi-~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF-GQIYVSWI-ND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC-CCEEEEEE-CT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccC-CcEEEEEE-cC-----CcEEEEeecHHHHHHHHHHhc
Confidence 455565 99999999999999995 98864444 12 279999999999999887 54
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.20 E-value=0.29 Score=44.41 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=46.3
Q ss_pred CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEEeecCCC
Q 014866 341 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 341 te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-ln--g~~l~G~~l~V~~a~~~ 406 (417)
..+.|+++|.. |+.+..+..++..+ -..|.|.+.++|.+|.. |+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHh-cCCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999 59999998887654 68999999999999999 99 99999999999999544
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.17 E-value=0.26 Score=50.96 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=54.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhh-cCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeeEEee
Q 014866 329 RTIYCTNIDKKVTQADVKLFFES-VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIRVSP 402 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~-f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng--~~l~G~~l~V~~ 402 (417)
+.|.++-||.++..++++.||+. -|..+.+|.+..+.+ -||+|++..+|+.|.. |.. +.|.|++|...+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 66778999999999999999973 256889998876654 6999999999999987 644 567777664443
No 189
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.61 E-value=0.16 Score=47.79 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=58.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEec-CCCCCceEEEEEecCHHHHHHHHH-h--cCc--ccCCcceEEccC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG-DPNSVLRFAFIEFTDEEGARAALN-L--AGT--MLGFYPVRVLPS 305 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~-d~~~skG~aFV~F~~~e~A~~Al~-l--ng~--~i~g~~l~V~~s 305 (417)
..|||.||+.-++.+.|.+-|+.||+|....++- +...+.|-++|.|...-.|.+|+. + .|. ...+++.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999998755544 445677889999999999999997 4 222 234666666553
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.41 E-value=0.38 Score=48.66 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=61.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 395 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G 395 (417)
++.|+|-.+|..++-.||..+...+.-.|.++++++|.-..+-...|.|.+.++|..-.+ +||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 689999999999999999999998877999999999875556689999999999999998 99987754
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.34 E-value=0.49 Score=45.52 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=54.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCee-eEEee
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP-IRVSP 402 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~-l~V~~ 402 (417)
..-|-|-++|+.- -.-|..+|++ ||.|.+.....+.+ |-+|.|.+.-+|.+||..||+.|+|.. |-|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~-cG~Vvkhv~~~ngN----wMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSR-CGEVVKHVTPSNGN----WMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHh-hCeeeeeecCCCCc----eEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 3567788888754 4568889998 89999887763323 999999999999999999999998874 34444
No 192
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.84 E-value=0.15 Score=40.52 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=47.0
Q ss_pred EEEEecCHHHHHHHHHhcCcc--cCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHh
Q 014866 274 AFIEFTDEEGARAALNLAGTM--LGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 350 (417)
Q Consensus 274 aFV~F~~~e~A~~Al~lng~~--i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~ 350 (417)
|.|+|.+..-|+..+.+..+. +++..+.|..+.-.... ..+..-....+.++|.|.|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~-----~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGH-----LQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCC-----ceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999844443 56665555443111000 0111111244568999999999999999998765
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.69 E-value=1.6 Score=36.22 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=48.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCC
Q 014866 234 VYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 297 (417)
Q Consensus 234 lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g 297 (417)
+.+...|..++.++|..+.+.+- .|..++|++|...++=.+.+.|.+.++|..... +||..+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444555566667766666553 678899999877666679999999999999998 99988753
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.67 E-value=0.27 Score=44.34 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=49.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCce---EEEEEeccC---C-CCceEEEEEeCCHHHHHHHHH-hCCceeCC----
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEV---YRLRLLGDY---H-HSTRIAFVEFVMAESAIAALN-CSGVVLGS---- 395 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I---~~v~i~~d~---~-~~kG~aFV~F~~~e~A~~Al~-lng~~l~G---- 395 (417)
..+|.|++||+.+|++++++.+++.+|.. .++.-.... . ..-.-|||.|.+.+++..-.. ++|+.|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 46899999999999999999887733655 333311211 1 223369999999999888887 99977633
Q ss_pred -eeeEEeecCC
Q 014866 396 -LPIRVSPSKT 405 (417)
Q Consensus 396 -~~l~V~~a~~ 405 (417)
.+-.|++|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 2556777643
No 195
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.55 E-value=0.14 Score=53.29 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh-cCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCccc---CCcceEEcc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML---GFYPVRVLP 304 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i---~g~~l~V~~ 304 (417)
.+..|||.||=.-.|.-+|++++. .+|.|++. ++. + -+..|||.|.+.++|..... |+|..+ +++.|.+.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD-k--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD-K--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HHH-H--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 456799999999999999999999 66777776 322 2 12479999999999999998 999876 466777766
Q ss_pred C
Q 014866 305 S 305 (417)
Q Consensus 305 s 305 (417)
.
T Consensus 519 ~ 519 (718)
T KOG2416|consen 519 V 519 (718)
T ss_pred c
Confidence 4
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.05 E-value=0.62 Score=40.14 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCCcEEEEcCCCCCCcH-H---HHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 228 EIIRRTVYVSDIDQQVTE-E---QLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te-~---~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
+..-.+|.|+-|..++.. + .+...++.||+|.+|.+... .-|.|.|.+..+|.+|+..-+....|..+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQSRAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcCCCCCceEEee
Confidence 345567888877766542 3 44556778999999988654 36999999999999999833346778888888
Q ss_pred cC
Q 014866 304 PS 305 (417)
Q Consensus 304 ~s 305 (417)
|.
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 74
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.95 E-value=1 Score=33.74 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 242 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 242 ~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
.++-++++..+..|+- .+|..|+. || ||.|.+..+|+++.. .+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t---Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT---GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC---EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4778899999999963 34445554 65 999999999999998 8988887766654
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.93 E-value=0.38 Score=46.23 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=53.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcc-eEEccC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYP-VRVLPS 305 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~-l~V~~s 305 (417)
..-|-|-++|+.-. ..|..+|++||.|++.....+. -+-+|.|.+.-+|++||..||..|+|.. |-|.++
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 44566778887644 4567789999999887655332 2899999999999999999999998764 455554
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.90 E-value=0.15 Score=51.67 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=58.7
Q ss_pred eEEEeCCCCCC-CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCC
Q 014866 330 TIYCTNIDKKV-TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 330 ~l~V~nLp~~~-te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~~ 407 (417)
.|-+.-.|+.+ +-.+|...|.+ ||.|..|.+-.... -|.|+|.+..+|-.|-..++..|++|.|+|-|-++..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~-fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQ-FGEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhh-cCccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 33344445553 56789999999 59999998865422 5899999999998888889999999999999998854
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.46 E-value=0.3 Score=44.04 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-CCCe---eEEEEecCCC--C--CceEEEEEecCHHHHHHHHH-hcCcccC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVG-CGQV---VDCRICGDPN--S--VLRFAFIEFTDEEGARAALN-LAGTMLG 296 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~I---~~v~i~~d~~--~--skG~aFV~F~~~e~A~~Al~-lng~~i~ 296 (417)
....|.|++||+++|++++.+.++. ++.- ..+.-..... . .-.-|||.|.+.+++..... ++|+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4568999999999999999997776 6655 3333222221 1 24469999999999888887 9998864
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.94 E-value=0.23 Score=53.75 Aligned_cols=76 Identities=29% Similarity=0.273 Sum_probs=63.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCcee--CCeeeEEeecCCCC
Q 014866 331 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL--GSLPIRVSPSKTPV 407 (417)
Q Consensus 331 l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l--~G~~l~V~~a~~~~ 407 (417)
.++.|.+-..+-.-|..+|+. ||.|.+++..++.+ .|.|+|.+.+.|..|++ |+|+++ -|-+.+|.+|++.+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSD-YGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHh-hcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344455567778889999999 69999999999877 89999999999999999 999754 78899999999876
Q ss_pred CCCC
Q 014866 408 RPRA 411 (417)
Q Consensus 408 ~~~~ 411 (417)
.-.+
T Consensus 376 ~~ep 379 (1007)
T KOG4574|consen 376 MYEP 379 (1007)
T ss_pred cccC
Confidence 5443
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.64 E-value=0.16 Score=51.54 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=59.8
Q ss_pred CcEEEEcCCCCCC-cHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 231 RRTVYVSDIDQQV-TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 231 ~~~lfV~nLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
.+.|-+.-.|+.+ +-++|..+|.+||.|..|.+-.... -|.|+|.+..+|-.|....+..|+++.|+|.|-+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3445555566664 4578999999999999999876533 58999999999988888899999999999999754
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.50 E-value=1.3 Score=44.85 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=58.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC-CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 297 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g 297 (417)
....|+|-.+|..+|-.||..|...+ -.|.++++++|....+=...|.|.+.++|....+ +||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37789999999999999999998865 4789999999776556668999999999999998 99998863
No 204
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.34 E-value=0.13 Score=50.06 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCCHHHHH---HHHhhcCCceEEEEEeccCC-----CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeE
Q 014866 329 RTIYCTNIDKKVTQADVK---LFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 399 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~---~~F~~f~G~I~~v~i~~d~~-----~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~ 399 (417)
+.+||-+|+..+..+.+. +.|.+ ||.|..|.+..+.. ..-.-++|+|...++|..||. .+|..+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 567788888876655554 58888 69999999988651 122258999999999999999 999999999988
Q ss_pred EeecCCC
Q 014866 400 VSPSKTP 406 (417)
Q Consensus 400 V~~a~~~ 406 (417)
..++.++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887654
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.10 E-value=0.21 Score=48.82 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=60.1
Q ss_pred CcEEEEcCCCCCCcHHHHH---HHHhcCCCeeEEEEecCCC--C---CceEEEEEecCHHHHHHHHH-hcCcccCCcceE
Q 014866 231 RRTVYVSDIDQQVTEEQLA---ALFVGCGQVVDCRICGDPN--S---VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 301 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~--~---skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~ 301 (417)
..-+||-+|+.....+.+. +.|.+||.|..|.+..+.. . +..-+||+|...++|..||. .+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3458899999886655443 5899999999999888762 1 12238999999999999998 999999999987
Q ss_pred EccCC
Q 014866 302 VLPSK 306 (417)
Q Consensus 302 V~~s~ 306 (417)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 76653
No 206
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.18 E-value=1 Score=46.87 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh--cCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC--cccCCcceEE
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFV--GCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRV 302 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~--~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng--~~i~g~~l~V 302 (417)
..+.|.++-||..+-.++++.+|+ .|-.+.+|.+-.+.+ =||+|++..+|+.|.+ |.. ..|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 445688899999999999999998 477889998876653 4899999999999987 543 3477887743
No 207
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.08 E-value=16 Score=35.35 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=99.2
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC---------CCceEEEEEecCHHHHHHHHH--h---cC
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---------SVLRFAFIEFTDEEGARAALN--L---AG 292 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------~skG~aFV~F~~~e~A~~Al~--l---ng 292 (417)
+.-..|.|.+.|+..+++-..+...|-+||+|++|.++.+.. +......+.|-+.+.+..... | +.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 344577899999999999999999999999999999998661 124578899999888765442 2 21
Q ss_pred --cccCCcceEEccCCC-----CCCCC-CCCC---C-CC--CchhhccccceEEEeCCCCCCCHHH-HHHHH---hhcCC
Q 014866 293 --TMLGFYPVRVLPSKT-----AIAPV-NPTF---L-PR--TEDEREMCARTIYCTNIDKKVTQAD-VKLFF---ESVCG 354 (417)
Q Consensus 293 --~~i~g~~l~V~~s~~-----~~~~~-~~~~---~-~~--~~~~~~~~~~~l~V~nLp~~~te~d-L~~~F---~~f~G 354 (417)
..+....|.+.+..- ..... .+.+ . +. ..-.....+|.|.|.-- ..+.+++ +.+.+ .. -+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~-~~ 168 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKN-SN 168 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhcc-CC
Confidence 124556666655321 10000 0111 0 00 00011334677777543 3443333 33322 11 13
Q ss_pred ----ceEEEEEeccC----CCCceEEEEEeCCHHHHHHHHH-hC
Q 014866 355 ----EVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN-CS 389 (417)
Q Consensus 355 ----~I~~v~i~~d~----~~~kG~aFV~F~~~e~A~~Al~-ln 389 (417)
.+++|.++... .-++.||.+.|-+...|...++ +.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 47788877643 2466799999999999999987 53
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.99 E-value=2.5 Score=38.40 Aligned_cols=59 Identities=24% Similarity=0.180 Sum_probs=44.7
Q ss_pred cHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc--CcccCCcceEEccCC
Q 014866 244 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVLPSK 306 (417)
Q Consensus 244 te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-ln--g~~i~g~~l~V~~s~ 306 (417)
..+.|+++|..|+.+......+.- +-..|.|.+.+.|..|.. |+ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999999888877654 358999999999999998 88 889999999998874
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.87 E-value=3.9 Score=31.14 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHhhcCC----ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 339 KVTQADVKLFFESVCG----EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 339 ~~te~dL~~~F~~f~G----~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
.++..+|..++....| .|-.|+|..+ |+||+-.. +.|..+++ |++..+.|++|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788889888876423 5667777644 89999875 46788888 9999999999999875
No 210
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.90 E-value=2.2 Score=36.92 Aligned_cols=121 Identities=11% Similarity=-0.045 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHhc-CCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCCCCCCCCCCCCCCC
Q 014866 242 QVTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRT 320 (417)
Q Consensus 242 ~~te~~L~~~F~~-~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~ 320 (417)
..+-..|...+.. .+....+.+..-. .++..+.|.+.+++.+++......++|..+.+..-.+...+....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~---~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~----- 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG---DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK----- 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC---CCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc-----
Confidence 3555566655543 2222223332211 268999999999999998877777888888777654222111100
Q ss_pred chhhccccceEEEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEE
Q 014866 321 EDEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 374 (417)
Q Consensus 321 ~~~~~~~~~~l~V~nLp~~-~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV 374 (417)
-....--|.|.|||.. .+++-++.+-+. +|.+..+...........|+-|
T Consensus 100 ---~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 100 ---FEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred ---eeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCCCCcccccEEEE
Confidence 0111245678899998 677888899888 5999999876544222334444
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.72 E-value=1.3 Score=47.05 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=59.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
+..++||+|+-..+..+-++.+... ||.|.++.... |||..|..+..+..|+. ++-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3478999999999999999999986 99999887653 99999999999999998 888889998887766
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.58 E-value=0.99 Score=49.10 Aligned_cols=72 Identities=29% Similarity=0.315 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCccc--CCcceEEccCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML--GFYPVRVLPSKT 307 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i--~g~~l~V~~s~~ 307 (417)
.+.++.|.+-..+..-|..+|..||.|.+.+..++-+ .|.|.|.+.+.|..|++ ++|..+ -|-|.+|.+++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3466777788889999999999999999999988876 79999999999999998 999885 588899988865
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.92 E-value=1.6 Score=46.31 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=91.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
....++||+|+...+..+-++.+...||.|.++.... |||..|..+.....|+. ++...++|..+.+.....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 4567899999999999999999999999998876654 99999999999999998 888888888877665321
Q ss_pred CCCCC----------CCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEe
Q 014866 308 AIAPV----------NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEF 376 (417)
Q Consensus 308 ~~~~~----------~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F 376 (417)
..... ...+.|... .+-++|.|+|-...+......+.-. +...+..-..+. +...-++|-+|
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~s------rr~e~i~~k~~~l~~~~~~~~~~is-~s~~s~~~~~e~d~h~~e~~~~~~ 183 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSS------RRQESIQNKPLSLDEQIHKKSLQIS-SSAASRRQIAEADDHCLELEKTET 183 (668)
T ss_pred hhcCccccccchhhhhcccCCchh------HHHHHhhccccchhHHHHHHHHhcc-chhhhhhhhHHHHHHHHHHHHhhc
Confidence 11100 011122211 3566788888777766666666532 333333333222 22233445555
Q ss_pred CCHHHHHHHH
Q 014866 377 VMAESAIAAL 386 (417)
Q Consensus 377 ~~~e~A~~Al 386 (417)
.+...+-.+.
T Consensus 184 ~s~~~~~~~~ 193 (668)
T KOG2253|consen 184 ESNSALSKEA 193 (668)
T ss_pred ccccccCccc
Confidence 5444443333
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.71 E-value=11 Score=28.27 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 014866 339 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 400 (417)
Q Consensus 339 ~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V 400 (417)
.++-++++..+..+ + -..|. .|. .| =||.|.+..+|+++.. .+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y-~-~~~I~--~d~---tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-R-WDRIR--DDR---TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC-C-cceEE--ecC---CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 36788999999985 3 33343 332 23 4999999999999999 9999998888765
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.07 E-value=17 Score=27.53 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHhcCC-----CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 241 QQVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 241 ~~~te~~L~~~F~~~G-----~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
..++..+|..++...+ .|-.|.+..+ |+||+-... .|..++. |++..+.|+++.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578889999888664 4456766553 899998654 7788887 9999999999998753
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.80 E-value=25 Score=37.09 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcC----CCeeEEEEecCC
Q 014866 228 EIIRRTVYVSDIDQQ-VTEEQLAALFVGC----GQVVDCRICGDP 267 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~d~ 267 (417)
...++.|-|.|+.|+ +...+|.-+|+.| |.|.+|.|.+..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe 215 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE 215 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh
Confidence 346778999999987 7889999999865 589999997643
No 217
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=66.02 E-value=21 Score=28.01 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=43.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 387 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~ 387 (417)
.-|.--++...+..+|++.++.+|| .|.+|....-++.- --|||.+....+|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHH
Confidence 3455567889999999999999888 78888877655322 269999999888866543
No 218
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.59 E-value=25 Score=27.12 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=42.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 386 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al 386 (417)
.-|+-.++...+..+|++.++.+|| .|.+|....-++.-+ -|||.+...+.|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K-KA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK-KAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce-EEEEEECCCCcHHHHH
Confidence 4566678889999999999999888 788887766553222 6999998887775544
No 219
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.60 E-value=10 Score=31.75 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=28.6
Q ss_pred CcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHH-HHHHHHHh
Q 014866 243 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEE-GARAALNL 290 (417)
Q Consensus 243 ~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e-~A~~Al~l 290 (417)
++.+.|++.|+.|..+. ++...+...+.|++.|.|...- --..|+.|
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 35588999999998875 6666666667899999997643 33445544
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.86 E-value=34 Score=34.53 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCC-eeEEEEecCCCCCceEEEEEecCHHHHHHHHHh
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEEGARAALNL 290 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~l 290 (417)
.-.+.|=|-++|.....+||...|..||. --.|+++.|. .+|-.|.+...|..||.+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 34567899999999999999999999973 3557777665 699999999999999986
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.40 E-value=36 Score=28.44 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=30.5
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCH-HHHHHHHH
Q 014866 329 RTIYCTNIDKK---------VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA-ESAIAALN 387 (417)
Q Consensus 329 ~~l~V~nLp~~---------~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~-e~A~~Al~ 387 (417)
.++.|-|++.+ .+.++|++.|..| ..++ ++.+.+...+.|++.|+|... .--..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f-~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF-NPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH----SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhc-CCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 35566666543 3557899999995 6664 555566656789999999863 33355554
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=45.28 E-value=24 Score=33.95 Aligned_cols=45 Identities=7% Similarity=0.166 Sum_probs=35.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCe-eEEEEecCCCCCceEEEEEecCH
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICGDPNSVLRFAFIEFTDE 281 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~~skG~aFV~F~~~ 281 (417)
-||++|||.++.-.||+..+.+.|.+ .++.+. .+.|-||+.|.+.
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCc
Confidence 49999999999999999999877632 344332 3467899999874
No 223
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=42.21 E-value=46 Score=32.35 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=58.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---------CCCceEEEEEeCCHHHHHHHHH-----hCC--c
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---------HHSTRIAFVEFVMAESAIAALN-----CSG--V 391 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~---------~~~kG~aFV~F~~~e~A~~Al~-----lng--~ 391 (417)
+|.|.+.|+..+++-..+...|-+ ||.|++|.++.+. .+......+.|-+.+.+..--+ |.. .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999 5999999999765 1234578999999888755442 322 4
Q ss_pred eeCCeeeEEeecC
Q 014866 392 VLGSLPIRVSPSK 404 (417)
Q Consensus 392 ~l~G~~l~V~~a~ 404 (417)
.+....|.|.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 6777778887753
No 224
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.13 E-value=12 Score=29.76 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHh
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFV 253 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~ 253 (417)
....++|.|.|||..+++++|++.+.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 45678999999999999999997654
No 225
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=36.77 E-value=61 Score=25.86 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCC
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYH 366 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~ 366 (417)
.-|+-.++..++..+|++.++.+|| .|.+|....-.|
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~g 58 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKG 58 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCC
Confidence 4556667889999999999999888 788887666554
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.29 E-value=87 Score=31.78 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=48.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 398 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l 398 (417)
...|-|.++|.....+||...|+.| | .=..|..+-|. .||-.|.+...|..|+-|....+.=|+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~y-q~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETY-QNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHh-hcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 4788899999999999999999985 5 33334333332 6899999999999999875545444443
No 227
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=33.66 E-value=1.3e+02 Score=26.31 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=40.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~A 385 (417)
.-|+--++...+..+|++.++.+|| .|..|....-++..+ -|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K-KA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK-KAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce-EEEEEECCCCcHHHH
Confidence 4555567888999999999998778 788887666553222 699999877765443
No 228
>CHL00030 rpl23 ribosomal protein L23
Probab=32.84 E-value=75 Score=25.46 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=30.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCC
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHH 367 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~ 367 (417)
.-|+--++...+..+|++.++.+|| .|..|....-++.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 4566667889999999999999888 7888877665543
No 229
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=29.25 E-value=44 Score=30.19 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=48.8
Q ss_pred ceEEEeCCCCCC-CHH----HHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe-eeEEe
Q 014866 329 RTIYCTNIDKKV-TQA----DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRVS 401 (417)
Q Consensus 329 ~~l~V~nLp~~~-te~----dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~-~l~V~ 401 (417)
.++.+.+++..+ ++. ...++|.+ |-+..-..++ ++.+..-|.|.+++.|..|.- +++..|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq-~n~~~~fq~l----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQ-INEDATFQLL----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhh-hCcchHHHHH----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 456667776653 222 23344444 2333333333 344577899999999999997 999999998 89888
Q ss_pred ecCCCC
Q 014866 402 PSKTPV 407 (417)
Q Consensus 402 ~a~~~~ 407 (417)
++++.-
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 887654
No 230
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=32 Score=34.38 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=34.7
Q ss_pred CccccceeeeccccccccCCCcccchhhhhccccceeeeeEEeeecc
Q 014866 2 RWKRHSTVHFQDDVKQIPHSSIRRSSSVFDSLSNSLCVNYFVTESKK 48 (417)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (417)
||+.|+...| ||-.+.=||.|-=-...+++-+||||-.+-+
T Consensus 242 rwe~~~~lsF------IPPDGkFrLlsy~v~~~~~v~~pvyv~~~i~ 282 (418)
T KOG2740|consen 242 RWESHSVLSF------IPPDGKFRLLSYRVDAQNQVAIPVYVKNSIS 282 (418)
T ss_pred ccccccceEE------cCCCCcEEEEEEEEehhhccccceEEeeeec
Confidence 7998877776 8999999999988889999999999976433
No 231
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=26.86 E-value=1.3e+02 Score=23.71 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=33.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEec
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFT 279 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~ 279 (417)
..-|||||++..+-|.-...+.+..+.=.-+-+..+.+ ..||+|-+..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeC
Confidence 44599999999888877666666555544444444444 6799998874
No 232
>PF12743 ESR1_C: Oestrogen-type nuclear receptor final C-terminal ; InterPro: IPR024736 This entry represents C-terminal domain (also known as the F domain) of the estrogen-type receptors. The actual function of this domain is not known, but it is absent from all the other types of nuclear receptors. Oestrogen receptors modulate AP-1-dependent transcription [] through two distinct mechanisms: via protein-protein interactions on DNA; and via non-genomic actions. The mechanism used depends on the cellular localisation of the receptor. In addition to the more extensively studied cross-talk on DNA, additional non-genomic actions might be very important in target tissues in which membrane-associated ERs are found. These non-genomic actions probably contribute to the overall physiological responses mediated by ligand-bound ERs [] and might possibly be mediated via this C-terminal domain.
Probab=25.63 E-value=33 Score=23.36 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.9
Q ss_pred hhccccceeeeeEEe
Q 014866 30 FDSLSNSLCVNYFVT 44 (417)
Q Consensus 30 ~~~~~~~~~~~~~~~ 44 (417)
=++.+.+|| ||||.
T Consensus 20 ~stsshsLQ-~yYin 33 (43)
T PF12743_consen 20 ASTSSHSLQ-TYYIN 33 (43)
T ss_pred ccCCccccc-ceeec
Confidence 467889999 99996
No 233
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=25.32 E-value=1.1e+02 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=30.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCC
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYH 366 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~ 366 (417)
..|+-.++...+..+|++.++.+|| .|..|....-.+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 4577788999999999999999888 788887765443
No 234
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.68 E-value=83 Score=23.24 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCeeEEEEe
Q 014866 246 EQLAALFVGCGQVVDCRIC 264 (417)
Q Consensus 246 ~~L~~~F~~~G~I~~v~i~ 264 (417)
.+|+++|+..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999998776554
No 235
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=22.81 E-value=2e+02 Score=21.49 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCC-ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 014866 343 ADVKLFFESVCG-EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 343 ~dL~~~F~~f~G-~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~ 406 (417)
++|.+-|... | .|..+.-+... ..+...-||+.+...+...+ ++=..++|..|+|+.....
T Consensus 2 ~~I~~~L~~~-G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQ-GHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHc-CCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecCCCC
Confidence 4677788774 8 77777666554 45556888888876553333 5566789999999887644
No 236
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.30 E-value=87 Score=23.24 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=26.4
Q ss_pred CcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEE
Q 014866 243 VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFI 276 (417)
Q Consensus 243 ~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV 276 (417)
.-+.+|..+|-+-..|.++.+...+.-.+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 3456788888888899999998877655677777
No 237
>PF14893 PNMA: PNMA
Probab=21.32 E-value=73 Score=31.74 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh----cCCCeeEEEEecC---CCCCceEEEEEecC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFV----GCGQVVDCRICGD---PNSVLRFAFIEFTD 280 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d---~~~skG~aFV~F~~ 280 (417)
..+.|.|.+||.++++++|++.+. ..|. +++... +....--++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~---yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGR---YRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhccccc---ceehhhHhhhhcccceeeeeccc
Confidence 467799999999999999998776 4453 233221 11123467888864
No 238
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.15 E-value=1.1e+02 Score=30.95 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=46.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC----CCCceEEEEEeCCHHHHHHHHH-hCCcee
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN-CSGVVL 393 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~----~~~kG~aFV~F~~~e~A~~Al~-lng~~l 393 (417)
..+.|.+||+.+++.+|.+-..+|--.+....+.+.. ..-.+.|+|.|...++...-.. .+|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 6788999999999999999888852244444444321 2235689999999998655555 788655
No 239
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=14 Score=37.63 Aligned_cols=77 Identities=5% Similarity=-0.192 Sum_probs=60.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
...++..+|...+++++.-+|.. ||.|..+.+.+.. +...-.+||.-.+ ++|..+++ +....+.|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d-~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHED-PSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccC-CcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 45678889999999999999998 6999998887754 3344477877654 56788887 888888888888888765
Q ss_pred CC
Q 014866 406 PV 407 (417)
Q Consensus 406 ~~ 407 (417)
..
T Consensus 82 s~ 83 (572)
T KOG4365|consen 82 SS 83 (572)
T ss_pred hh
Confidence 53
No 240
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.49 E-value=1.8e+02 Score=28.43 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=36.0
Q ss_pred EEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHh
Q 014866 274 AFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 350 (417)
Q Consensus 274 aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~ 350 (417)
|||+|.+..+|..|.+ +.... ++.+.+..+.. .+.|.=.||..+..+..+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe--------------------P~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE--------------------PDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC--------------------cccccccccCCChHHHHHHHHHH
Confidence 7999999999999998 43332 23445555421 14466677766666666666554
No 241
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.29 E-value=1.1e+02 Score=30.84 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC-CeeEEEEecCC-C---CCceEEEEEecCHHHHHHHHH-hcCccc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDP-N---SVLRFAFIEFTDEEGARAALN-LAGTML 295 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~-~---~skG~aFV~F~~~e~A~~Al~-lng~~i 295 (417)
....+.|.+||+..++++|.+-..++- .+....+.... . .-.+.+||.|...++...... ++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 345688999999999999998888764 22233333211 1 126789999999999777776 888775
No 242
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=20.29 E-value=2.5e+02 Score=21.93 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHhhcCCc----eEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 014866 338 KKVTQADVKLFFESVCGE----VYRLRLLGDY--HHSTRIAFVEFVMAESAI 383 (417)
Q Consensus 338 ~~~te~dL~~~F~~f~G~----I~~v~i~~d~--~~~kG~aFV~F~~~e~A~ 383 (417)
.+.+..+|++.+...|+. |.--.+.... +.+.|||.| |++.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~k 61 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALK 61 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHH
Confidence 456788888887766662 2222233333 456777776 45555554
No 243
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=20.10 E-value=1.7e+02 Score=24.51 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHhhcCCceEEEEE---eccC---CCCceEEEEEeCCHHHHH
Q 014866 339 KVTQADVKLFFESVCGEVYRLRL---LGDY---HHSTRIAFVEFVMAESAI 383 (417)
Q Consensus 339 ~~te~dL~~~F~~f~G~I~~v~i---~~d~---~~~kG~aFV~F~~~e~A~ 383 (417)
+++.+||++-..+.|-.-.++.+ .+.. |++.|||.| |++.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 57788888777665543222222 2222 578889987 56666554
Done!