Query 014866
Match_columns 417
No_of_seqs 533 out of 2663
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 4.5E-41 1.5E-45 323.8 21.3 236 128-408 21-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.1E-41 1.1E-45 326.2 19.0 242 128-406 40-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 2.7E-33 9.3E-38 259.1 21.0 166 228-406 12-181 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 1.7E-32 5.8E-37 241.4 20.8 161 232-405 1-166 (166)
5 1l3k_A Heterogeneous nuclear r 100.0 5.9E-32 2E-36 245.1 20.8 177 227-412 9-189 (196)
6 2qfj_A FBP-interacting repress 100.0 8.3E-32 2.8E-36 247.9 18.3 180 229-412 26-211 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 2E-31 6.9E-36 235.5 19.8 159 230-403 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 5.1E-31 1.7E-35 232.2 20.8 158 231-403 2-167 (167)
9 3nmr_A Cugbp ELAV-like family 100.0 4.9E-31 1.7E-35 234.3 20.4 161 230-404 2-175 (175)
10 2cjk_A Nuclear polyadenylated 100.0 1.4E-31 4.8E-36 236.5 14.2 161 230-406 2-166 (167)
11 3tyt_A Heterogeneous nuclear r 100.0 3.5E-30 1.2E-34 237.2 19.3 170 230-403 3-204 (205)
12 2g4b_A Splicing factor U2AF 65 100.0 6.2E-30 2.1E-34 227.0 18.6 156 230-404 3-172 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 1.4E-29 4.6E-34 229.9 20.5 174 230-408 3-196 (198)
14 1fje_B Nucleolin RBD12, protei 100.0 1.2E-30 4.2E-35 232.6 13.1 164 227-406 9-174 (175)
15 2adc_A Polypyrimidine tract-bi 100.0 3.5E-29 1.2E-33 234.0 21.8 177 224-407 27-229 (229)
16 4f02_A Polyadenylate-binding p 100.0 1.2E-30 4.1E-35 241.3 9.0 156 129-306 15-179 (213)
17 1qm9_A Polypyrimidine tract-bi 100.0 2E-29 6.7E-34 229.6 16.7 171 230-407 2-198 (198)
18 3pgw_A U1-A; protein-RNA compl 100.0 9.4E-29 3.2E-33 237.5 22.3 173 228-405 6-282 (282)
19 2ghp_A U4/U6 snRNA-associated 100.0 3.8E-29 1.3E-33 241.4 18.0 161 227-409 37-200 (292)
20 3smz_A Protein raver-1, ribonu 100.0 7E-28 2.4E-32 231.6 21.3 155 228-408 19-177 (284)
21 2cjk_A Nuclear polyadenylated 100.0 3E-29 1E-33 221.5 9.0 158 129-306 3-164 (167)
22 3sde_A Paraspeckle component 1 100.0 7.4E-28 2.5E-32 229.4 19.0 154 228-406 19-179 (261)
23 3md3_A Nuclear and cytoplasmic 100.0 2.2E-28 7.6E-33 215.0 10.6 154 130-306 1-165 (166)
24 2qfj_A FBP-interacting repress 100.0 8.8E-28 3E-32 220.9 14.8 158 129-308 28-205 (216)
25 1b7f_A Protein (SXL-lethal pro 99.9 4.2E-28 1.4E-32 214.1 11.2 157 129-305 3-168 (168)
26 3nmr_A Cugbp ELAV-like family 99.9 6.2E-28 2.1E-32 214.2 11.0 158 129-305 3-174 (175)
27 1l3k_A Heterogeneous nuclear r 99.9 5E-28 1.7E-32 219.2 10.3 157 129-307 13-182 (196)
28 1fxl_A Paraneoplastic encephal 99.9 9.2E-28 3.1E-32 211.3 10.7 156 130-305 3-167 (167)
29 2g4b_A Splicing factor U2AF 65 99.9 6.2E-26 2.1E-30 201.1 9.9 148 129-305 4-171 (172)
30 3tyt_A Heterogeneous nuclear r 99.9 6.3E-26 2.1E-30 208.7 9.2 149 130-305 5-204 (205)
31 2yh0_A Splicing factor U2AF 65 99.9 5E-26 1.7E-30 206.3 6.3 156 129-307 4-193 (198)
32 1fje_B Nucleolin RBD12, protei 99.9 5.4E-26 1.8E-30 202.4 5.2 154 127-306 11-172 (175)
33 3pgw_A U1-A; protein-RNA compl 99.9 7.7E-25 2.6E-29 210.1 12.3 150 129-306 9-281 (282)
34 2adc_A Polypyrimidine tract-bi 99.9 2.6E-24 8.8E-29 200.9 13.8 150 128-307 33-227 (229)
35 1qm9_A Polypyrimidine tract-bi 99.9 2.1E-24 7E-29 196.3 11.6 149 129-307 3-196 (198)
36 3sde_A Paraspeckle component 1 99.9 1E-23 3.6E-28 200.7 10.5 147 129-307 22-178 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 2.3E-22 7.9E-27 176.7 15.2 148 260-409 2-153 (158)
38 4f25_A Polyadenylate-binding p 99.9 1.4E-21 5E-26 162.9 9.5 109 230-344 4-113 (115)
39 2i2y_A Fusion protein consists 99.8 1E-20 3.5E-25 165.0 13.7 141 262-407 4-149 (150)
40 4fxv_A ELAV-like protein 1; RN 99.8 3.9E-19 1.3E-23 144.3 11.6 78 328-406 19-99 (99)
41 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-19 4.4E-24 159.1 8.4 122 178-308 12-150 (158)
42 4f25_A Polyadenylate-binding p 99.8 4.9E-18 1.7E-22 141.4 11.5 79 328-407 5-84 (115)
43 4fxv_A ELAV-like protein 1; RN 99.7 4E-18 1.4E-22 138.2 10.2 78 229-306 17-97 (99)
44 2lxi_A RNA-binding protein 10; 99.7 2.9E-18 9.8E-23 136.9 7.7 81 328-409 1-86 (91)
45 2lea_A Serine/arginine-rich sp 99.7 5E-18 1.7E-22 145.6 8.5 123 273-411 6-132 (135)
46 3s8s_A Histone-lysine N-methyl 99.7 2.3E-17 7.8E-22 136.4 12.1 79 327-406 5-86 (110)
47 2cqi_A Nucleolysin TIAR; RNA r 99.7 6E-17 2.1E-21 131.7 13.4 85 326-411 13-98 (103)
48 1whw_A Hypothetical protein ri 99.7 4.4E-17 1.5E-21 131.5 12.4 87 327-414 7-96 (99)
49 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.8E-17 1.3E-21 128.5 11.5 79 327-406 5-86 (87)
50 3md1_A Nuclear and cytoplasmic 99.7 5.4E-17 1.9E-21 126.4 12.2 78 329-407 2-82 (83)
51 2lkz_A RNA-binding protein 5; 99.7 7.4E-18 2.5E-22 135.7 7.2 79 327-406 8-95 (95)
52 2cq3_A RNA-binding protein 9; 99.7 9E-17 3.1E-21 130.7 13.8 84 326-410 13-97 (103)
53 2dgo_A Cytotoxic granule-assoc 99.7 1E-16 3.6E-21 132.9 14.2 85 326-411 13-100 (115)
54 2dnh_A Bruno-like 5, RNA bindi 99.7 6.1E-17 2.1E-21 132.1 12.1 84 326-410 13-101 (105)
55 2cq0_A Eukaryotic translation 99.7 5.9E-17 2E-21 131.7 11.9 84 326-410 13-99 (103)
56 2dnz_A Probable RNA-binding pr 99.7 7.7E-17 2.6E-21 128.9 12.4 84 327-411 4-90 (95)
57 2cpf_A RNA binding motif prote 99.7 6.8E-17 2.3E-21 130.1 11.6 84 327-411 4-93 (98)
58 2hvz_A Splicing factor, argini 99.7 1.9E-17 6.3E-22 134.3 8.2 99 232-337 1-100 (101)
59 2d9p_A Polyadenylate-binding p 99.7 6.5E-17 2.2E-21 131.5 11.5 85 326-411 13-98 (103)
60 3p5t_L Cleavage and polyadenyl 99.7 8.7E-18 3E-22 133.5 6.1 81 329-410 2-87 (90)
61 1x5t_A Splicing factor 3B subu 99.7 4.9E-17 1.7E-21 130.3 10.5 84 327-411 4-91 (96)
62 2cpz_A CUG triplet repeat RNA- 99.7 8.9E-17 3E-21 133.4 12.4 84 326-410 23-109 (115)
63 2dgs_A DAZ-associated protein 99.7 9.6E-17 3.3E-21 129.5 12.2 83 327-410 9-93 (99)
64 2do4_A Squamous cell carcinoma 99.7 9.2E-17 3.1E-21 129.9 12.0 82 326-408 15-98 (100)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.2E-17 1.8E-21 127.1 10.2 77 327-404 6-85 (85)
66 2dgv_A HnRNP M, heterogeneous 99.7 5.4E-17 1.9E-21 129.0 10.4 83 327-410 7-90 (92)
67 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.1E-17 1.7E-21 131.8 10.3 84 327-411 11-97 (102)
68 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.8E-17 1.7E-21 144.0 11.1 134 276-410 11-156 (165)
69 2x1f_A MRNA 3'-END-processing 99.7 8.6E-17 2.9E-21 129.1 11.5 81 328-409 2-85 (96)
70 2dgx_A KIAA0430 protein; RRM d 99.7 1E-16 3.4E-21 128.9 11.8 81 328-410 9-94 (96)
71 2i2y_A Fusion protein consists 99.7 1.7E-17 5.7E-22 144.5 7.6 115 177-307 11-147 (150)
72 3s8s_A Histone-lysine N-methyl 99.7 6.7E-17 2.3E-21 133.6 10.6 78 229-306 4-84 (110)
73 2cqc_A Arginine/serine-rich sp 99.7 1.3E-16 4.4E-21 127.5 11.7 79 326-405 13-94 (95)
74 3lqv_A PRE-mRNA branch site pr 99.7 3E-17 1E-21 136.2 8.1 103 228-354 5-108 (115)
75 2cqd_A RNA-binding region cont 99.7 2.3E-16 8E-21 131.1 13.5 88 325-414 14-104 (116)
76 1sjq_A Polypyrimidine tract-bi 99.7 9.5E-17 3.3E-21 131.1 10.6 80 326-410 14-96 (105)
77 1x5s_A Cold-inducible RNA-bind 99.7 8.2E-17 2.8E-21 130.6 10.1 85 327-412 11-98 (102)
78 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.3E-16 4.6E-21 129.6 11.2 82 227-308 11-93 (103)
79 2cph_A RNA binding motif prote 99.7 1.7E-16 5.8E-21 129.8 11.8 84 326-410 13-101 (107)
80 1x4h_A RNA-binding protein 28; 99.7 1.9E-16 6.4E-21 130.4 12.1 84 327-411 14-106 (111)
81 2fy1_A RNA-binding motif prote 99.7 1.3E-16 4.5E-21 133.0 11.1 83 327-410 6-90 (116)
82 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-16 5.2E-21 127.0 11.0 78 326-404 14-94 (94)
83 2ywk_A Putative RNA-binding pr 99.7 1.7E-16 5.8E-21 126.9 11.3 78 327-405 15-94 (95)
84 2do0_A HnRNP M, heterogeneous 99.7 3.3E-16 1.1E-20 129.6 13.4 80 327-407 14-95 (114)
85 1x5u_A Splicing factor 3B subu 99.7 1.5E-16 5.2E-21 129.7 11.0 84 326-410 13-99 (105)
86 2err_A Ataxin-2-binding protei 99.7 7.9E-17 2.7E-21 132.8 9.2 82 325-407 26-108 (109)
87 2lxi_A RNA-binding protein 10; 99.7 3E-17 1E-21 130.9 6.4 77 231-307 1-82 (91)
88 1s79_A Lupus LA protein; RRM, 99.7 9.9E-17 3.4E-21 131.0 9.6 78 327-405 10-88 (103)
89 1p27_B RNA-binding protein 8A; 99.7 1.3E-16 4.6E-21 130.2 10.3 80 327-407 22-104 (106)
90 2cq3_A RNA-binding protein 9; 99.7 2.8E-16 9.4E-21 127.8 12.1 82 227-308 11-93 (103)
91 2dnm_A SRP46 splicing factor; 99.7 1.2E-16 4.1E-21 129.9 10.0 82 327-409 12-96 (103)
92 1oo0_B CG8781-PA, drosophila Y 99.7 1.7E-16 5.9E-21 130.6 10.9 82 326-408 24-108 (110)
93 3ucg_A Polyadenylate-binding p 99.7 2.7E-16 9.3E-21 124.1 11.3 78 328-406 6-85 (89)
94 3p5t_L Cleavage and polyadenyl 99.7 5.1E-17 1.8E-21 129.0 7.1 77 232-308 2-83 (90)
95 2dng_A Eukaryotic translation 99.7 3.9E-16 1.3E-20 127.0 12.4 82 327-410 14-97 (103)
96 2jrs_A RNA-binding protein 39; 99.7 2.2E-16 7.5E-21 130.0 11.0 81 326-407 24-107 (108)
97 3s7r_A Heterogeneous nuclear r 99.7 2.7E-16 9.2E-21 123.7 11.1 77 326-403 9-87 (87)
98 4a8x_A RNA-binding protein wit 99.7 2.1E-16 7.1E-21 124.4 10.3 79 328-407 4-86 (88)
99 2div_A TRNA selenocysteine ass 99.7 1.8E-16 6.1E-21 127.8 10.1 81 327-408 8-96 (99)
100 2dhg_A TRNA selenocysteine ass 99.7 2.2E-16 7.5E-21 128.5 10.6 84 327-411 8-95 (104)
101 2dgv_A HnRNP M, heterogeneous 99.7 2.8E-16 9.5E-21 124.9 11.0 81 228-308 5-86 (92)
102 2lea_A Serine/arginine-rich sp 99.7 5.6E-17 1.9E-21 139.0 7.3 117 181-308 6-127 (135)
103 1s79_A Lupus LA protein; RRM, 99.7 1.4E-16 4.7E-21 130.1 8.8 79 228-306 8-87 (103)
104 2lkz_A RNA-binding protein 5; 99.7 7.5E-17 2.6E-21 129.7 7.1 78 229-306 7-93 (95)
105 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.6E-21 124.2 8.8 79 228-306 4-85 (85)
106 2dnz_A Probable RNA-binding pr 99.7 5.4E-16 1.8E-20 124.0 12.0 80 229-308 3-85 (95)
107 2dgs_A DAZ-associated protein 99.7 5.1E-16 1.7E-20 125.2 11.9 81 228-308 7-89 (99)
108 2jwn_A Embryonic polyadenylate 99.7 3.8E-16 1.3E-20 131.3 11.6 84 325-409 33-118 (124)
109 2cpf_A RNA binding motif prote 99.7 2.3E-16 7.9E-21 127.0 9.8 80 229-308 3-88 (98)
110 3ns6_A Eukaryotic translation 99.7 6E-17 2.1E-21 131.4 6.4 77 328-405 6-92 (100)
111 2dgx_A KIAA0430 protein; RRM d 99.7 2.2E-16 7.5E-21 127.0 9.5 79 229-308 7-90 (96)
112 2dgp_A Bruno-like 4, RNA bindi 99.7 3.3E-16 1.1E-20 127.9 10.7 84 326-410 11-100 (106)
113 2cpe_A RNA-binding protein EWS 99.7 3.5E-16 1.2E-20 129.3 11.0 83 326-409 13-106 (113)
114 1wi8_A EIF-4B, eukaryotic tran 99.7 4.9E-16 1.7E-20 126.6 11.6 82 327-410 14-98 (104)
115 1x4a_A Splicing factor, argini 99.7 6.7E-16 2.3E-20 126.9 12.5 83 326-410 20-103 (109)
116 3s7r_A Heterogeneous nuclear r 99.7 2.8E-16 9.4E-21 123.7 9.8 80 226-305 6-87 (87)
117 2la6_A RNA-binding protein FUS 99.7 3E-16 1E-20 126.7 10.2 77 327-404 12-99 (99)
118 3md1_A Nuclear and cytoplasmic 99.7 3.1E-16 1.1E-20 122.1 9.9 76 232-307 2-80 (83)
119 2cq1_A PTB-like protein L; RRM 99.7 5.8E-16 2E-20 125.9 11.9 80 326-410 13-95 (101)
120 1sjq_A Polypyrimidine tract-bi 99.7 2.5E-16 8.6E-21 128.6 9.7 77 228-308 13-92 (105)
121 3ulh_A THO complex subunit 4; 99.7 5.6E-16 1.9E-20 126.7 11.8 78 326-404 27-106 (107)
122 2dgo_A Cytotoxic granule-assoc 99.7 5.9E-16 2E-20 128.4 12.0 85 226-310 10-97 (115)
123 2wbr_A GW182, gawky, LD47780P; 99.7 3.5E-16 1.2E-20 122.7 9.9 72 328-404 7-79 (89)
124 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.6E-16 8.8E-21 123.7 9.2 78 229-306 4-84 (87)
125 3pgw_S U1-70K; protein-RNA com 99.7 8.9E-17 3E-21 163.7 8.3 82 326-408 100-184 (437)
126 2khc_A Testis-specific RNP-typ 99.7 4.8E-16 1.6E-20 129.5 11.3 79 325-404 37-118 (118)
127 1whw_A Hypothetical protein ri 99.7 5.1E-16 1.7E-20 125.2 11.0 81 228-308 5-88 (99)
128 2err_A Ataxin-2-binding protei 99.7 1.8E-16 6.1E-21 130.6 8.3 82 226-307 24-106 (109)
129 1x4g_A Nucleolysin TIAR; struc 99.7 8.6E-16 2.9E-20 126.3 12.4 83 325-412 22-105 (109)
130 2d9p_A Polyadenylate-binding p 99.7 4.8E-16 1.6E-20 126.3 10.7 81 228-308 12-93 (103)
131 1x4b_A Heterogeneous nuclear r 99.7 8.5E-16 2.9E-20 127.7 12.4 85 326-411 25-111 (116)
132 2ad9_A Polypyrimidine tract-bi 99.7 4.3E-16 1.5E-20 130.3 10.5 82 326-412 29-113 (119)
133 2cq0_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 127.1 9.8 83 226-308 10-95 (103)
134 3r27_A HnRNP L, heterogeneous 99.7 5.4E-16 1.8E-20 125.5 10.6 76 326-406 19-97 (100)
135 2kt5_A RNA and export factor-b 99.7 6.6E-16 2.2E-20 130.0 11.6 86 326-412 33-120 (124)
136 2cqg_A TDP-43, TAR DNA-binding 99.7 1.4E-15 4.8E-20 123.6 13.1 84 326-411 13-98 (103)
137 1u6f_A Tcubp1, RNA-binding pro 99.7 8.8E-16 3E-20 131.7 12.5 85 325-410 39-126 (139)
138 2cpi_A CCR4-NOT transcription 99.7 4E-16 1.4E-20 128.9 10.0 81 327-408 14-103 (111)
139 2cqc_A Arginine/serine-rich sp 99.6 3.8E-16 1.3E-20 124.7 9.5 79 228-306 12-93 (95)
140 2dnq_A RNA-binding protein 4B; 99.6 1E-15 3.5E-20 121.3 11.8 77 327-410 7-84 (90)
141 2mss_A Protein (musashi1); RNA 99.6 1.7E-16 5.7E-21 121.3 6.9 73 330-403 1-75 (75)
142 2fc9_A NCL protein; structure 99.6 7.4E-16 2.5E-20 124.7 11.1 82 326-411 13-96 (101)
143 2nlw_A Eukaryotic translation 99.6 3.8E-16 1.3E-20 127.7 9.4 79 327-406 14-100 (105)
144 2dnm_A SRP46 splicing factor; 99.6 4.6E-16 1.6E-20 126.4 9.8 82 227-308 9-93 (103)
145 2dh8_A DAZ-associated protein 99.6 4E-16 1.4E-20 127.2 9.4 84 326-410 14-99 (105)
146 2dgw_A Probable RNA-binding pr 99.6 8.3E-16 2.8E-20 122.0 10.9 79 327-407 9-88 (91)
147 2ywk_A Putative RNA-binding pr 99.6 4.4E-16 1.5E-20 124.5 9.3 79 228-306 13-93 (95)
148 2do4_A Squamous cell carcinoma 99.6 8.6E-16 2.9E-20 124.1 11.0 80 228-307 14-95 (100)
149 2x1f_A MRNA 3'-END-processing 99.6 5.4E-16 1.9E-20 124.4 9.8 77 231-307 2-81 (96)
150 3ns6_A Eukaryotic translation 99.6 1.9E-16 6.6E-21 128.4 7.2 78 229-306 4-91 (100)
151 2rs2_A Musashi-1, RNA-binding 99.6 9E-16 3.1E-20 126.4 11.3 83 325-408 22-106 (109)
152 2cph_A RNA binding motif prote 99.6 7.8E-16 2.7E-20 125.8 10.9 82 227-308 11-97 (107)
153 2dnh_A Bruno-like 5, RNA bindi 99.6 1.3E-15 4.3E-20 124.2 12.0 81 228-308 12-97 (105)
154 2cpz_A CUG triplet repeat RNA- 99.6 8.4E-16 2.9E-20 127.5 11.2 81 228-308 22-105 (115)
155 1x5t_A Splicing factor 3B subu 99.6 5E-16 1.7E-20 124.4 9.4 80 229-308 3-86 (96)
156 1x5u_A Splicing factor 3B subu 99.6 7.5E-16 2.6E-20 125.5 10.6 82 227-308 11-95 (105)
157 2e5h_A Zinc finger CCHC-type a 99.6 3.6E-16 1.2E-20 124.7 8.5 79 228-306 13-94 (94)
158 1p1t_A Cleavage stimulation fa 99.6 2.3E-16 7.8E-21 128.3 7.4 80 327-407 7-89 (104)
159 1p27_B RNA-binding protein 8A; 99.6 6.8E-16 2.3E-20 126.0 10.2 79 229-307 21-102 (106)
160 2la6_A RNA-binding protein FUS 99.6 7.9E-16 2.7E-20 124.2 10.5 78 228-305 10-98 (99)
161 2cqp_A RNA-binding protein 12; 99.6 3.8E-16 1.3E-20 125.7 8.5 80 327-407 14-96 (98)
162 3ex7_B RNA-binding protein 8A; 99.6 4.7E-16 1.6E-20 131.1 9.5 83 327-410 21-106 (126)
163 3n9u_C Cleavage and polyadenyl 99.6 7E-16 2.4E-20 135.4 10.9 79 327-406 54-137 (156)
164 2jrs_A RNA-binding protein 39; 99.6 8.3E-16 2.8E-20 126.5 10.6 82 226-307 21-105 (108)
165 2wbr_A GW182, gawky, LD47780P; 99.6 3.7E-16 1.3E-20 122.6 8.0 72 230-305 6-78 (89)
166 1x4d_A Matrin 3; structural ge 99.6 4.5E-16 1.6E-20 126.7 8.8 79 327-410 14-96 (102)
167 2krb_A Eukaryotic translation 99.6 3.2E-16 1.1E-20 121.8 7.5 72 231-302 1-80 (81)
168 2kxn_B Transformer-2 protein h 99.6 5.9E-16 2E-20 131.6 9.8 80 326-406 44-126 (129)
169 3ucg_A Polyadenylate-binding p 99.6 6.8E-16 2.3E-20 121.8 9.5 78 230-307 5-84 (89)
170 2mss_A Protein (musashi1); RNA 99.6 2.9E-16 9.9E-21 120.0 7.0 73 233-305 1-75 (75)
171 2div_A TRNA selenocysteine ass 99.6 7.5E-16 2.6E-20 124.2 9.8 81 228-308 6-94 (99)
172 1x5s_A Cold-inducible RNA-bind 99.6 6.4E-16 2.2E-20 125.3 9.4 81 228-308 9-92 (102)
173 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.8E-15 6.3E-20 132.4 13.0 83 326-409 37-122 (156)
174 2fy1_A RNA-binding motif prote 99.6 1.5E-15 5.2E-20 126.5 11.9 81 228-308 4-86 (116)
175 4a8x_A RNA-binding protein wit 99.6 6E-16 2.1E-20 121.7 8.8 78 230-307 3-84 (88)
176 2krb_A Eukaryotic translation 99.6 3.2E-16 1.1E-20 121.8 7.1 72 329-401 2-81 (81)
177 2ki2_A SS-DNA binding protein 99.6 1.3E-16 4.5E-21 126.3 4.9 81 329-411 2-85 (90)
178 1why_A Hypothetical protein ri 99.6 1.1E-15 3.7E-20 122.9 10.4 77 327-408 16-95 (97)
179 2cq4_A RNA binding motif prote 99.6 3.1E-16 1E-20 130.0 7.3 80 327-407 24-105 (114)
180 2dis_A Unnamed protein product 99.6 1.5E-15 5.3E-20 124.5 11.3 82 327-409 7-95 (109)
181 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.9E-16 2E-20 125.5 8.6 81 228-308 9-92 (102)
182 2dgt_A RNA-binding protein 30; 99.6 2.8E-15 9.5E-20 119.3 12.3 78 327-411 9-87 (92)
183 1x4e_A RNA binding motif, sing 99.6 2.1E-16 7.3E-21 123.7 5.6 77 327-404 4-83 (85)
184 2ek1_A RNA-binding protein 12; 99.6 4.4E-16 1.5E-20 124.5 7.6 78 327-405 14-94 (95)
185 1x4h_A RNA-binding protein 28; 99.6 1.5E-15 5E-20 125.0 10.9 81 228-308 12-101 (111)
186 2cpd_A Apobec-1 stimulating pr 99.6 3.7E-15 1.3E-19 120.2 13.0 78 326-410 13-93 (99)
187 2hvz_A Splicing factor, argini 99.6 7.4E-16 2.5E-20 124.8 8.8 77 329-409 1-78 (101)
188 2dnp_A RNA-binding protein 14; 99.6 2.6E-15 8.9E-20 118.9 11.7 79 327-412 8-87 (90)
189 2jvo_A Nucleolar protein 3; nu 99.6 1.1E-15 3.9E-20 125.6 10.0 77 325-408 28-105 (108)
190 2jvr_A Nucleolar protein 3; RN 99.6 8.1E-16 2.8E-20 127.2 8.9 77 328-407 28-106 (111)
191 1wez_A HnRNP H', FTP-3, hetero 99.6 6.2E-16 2.1E-20 126.0 8.1 83 327-411 14-97 (102)
192 3pgw_S U1-70K; protein-RNA com 99.6 4E-16 1.4E-20 158.9 8.5 80 229-308 100-182 (437)
193 2dgu_A Heterogeneous nuclear r 99.6 2.7E-15 9.4E-20 122.0 11.9 79 327-412 10-89 (103)
194 1wf1_A RNA-binding protein RAL 99.6 1.3E-15 4.3E-20 125.5 9.9 77 327-410 26-104 (110)
195 1x4a_A Splicing factor, argini 99.6 1.9E-15 6.5E-20 124.1 11.0 80 228-308 19-99 (109)
196 2nlw_A Eukaryotic translation 99.6 7.1E-16 2.4E-20 126.1 8.3 79 228-306 12-98 (105)
197 1x4c_A Splicing factor, argini 99.6 2.6E-15 8.9E-20 123.3 11.8 78 327-410 14-97 (108)
198 1x4e_A RNA binding motif, sing 99.6 4.5E-16 1.5E-20 121.9 6.8 78 229-306 3-83 (85)
199 2xnq_A Nuclear polyadenylated 99.6 2.9E-15 9.8E-20 120.7 11.7 76 325-407 19-96 (97)
200 2cpi_A CCR4-NOT transcription 99.6 5.5E-16 1.9E-20 128.1 7.6 80 229-308 13-101 (111)
201 2dgp_A Bruno-like 4, RNA bindi 99.6 1.3E-15 4.3E-20 124.4 9.7 82 227-308 9-96 (106)
202 2m2b_A RNA-binding protein 10; 99.6 3.7E-16 1.3E-20 132.9 6.7 81 325-407 20-109 (131)
203 1x5o_A RNA binding motif, sing 99.6 3.1E-15 1.1E-19 123.7 12.1 80 326-406 23-112 (114)
204 3r27_A HnRNP L, heterogeneous 99.6 1.3E-15 4.6E-20 123.1 9.5 76 228-307 18-96 (100)
205 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4E-16 1.4E-20 126.4 6.3 80 326-407 17-99 (100)
206 2a3j_A U1 small nuclear ribonu 99.6 1.5E-15 5.1E-20 128.7 10.1 79 327-407 28-111 (127)
207 1fjc_A Nucleolin RBD2, protein 99.6 1.5E-15 5E-20 121.7 9.5 80 326-409 14-94 (96)
208 2dhg_A TRNA selenocysteine ass 99.6 2.5E-15 8.7E-20 122.2 11.0 81 228-308 6-90 (104)
209 2ad9_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 126.2 10.5 76 229-308 29-107 (119)
210 2cpy_A RNA-binding protein 12; 99.6 6.5E-16 2.2E-20 128.2 7.4 81 326-407 13-95 (114)
211 1wex_A Hypothetical protein (r 99.6 1.9E-15 6.5E-20 123.5 10.1 80 326-410 13-95 (104)
212 2kxn_B Transformer-2 protein h 99.6 1.8E-15 6.2E-20 128.5 10.3 81 227-307 42-125 (129)
213 2cqd_A RNA-binding region cont 99.6 2.4E-15 8.2E-20 124.9 10.8 81 227-308 13-96 (116)
214 2do0_A HnRNP M, heterogeneous 99.6 3.4E-15 1.2E-19 123.5 11.5 81 228-308 12-94 (114)
215 2dng_A Eukaryotic translation 99.6 2.1E-15 7.1E-20 122.6 10.1 80 228-308 12-93 (103)
216 1oo0_B CG8781-PA, drosophila Y 99.6 1.3E-15 4.6E-20 125.2 9.0 80 228-307 23-105 (110)
217 2dh8_A DAZ-associated protein 99.6 2E-15 7E-20 123.0 10.0 82 227-308 12-95 (105)
218 3ulh_A THO complex subunit 4; 99.6 2E-15 7E-20 123.4 10.0 79 228-306 26-106 (107)
219 2khc_A Testis-specific RNP-typ 99.6 7.8E-16 2.7E-20 128.2 7.6 79 228-306 37-118 (118)
220 2cq1_A PTB-like protein L; RRM 99.6 2.7E-15 9.3E-20 122.0 10.6 76 229-308 13-91 (101)
221 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5E-20 123.0 9.0 75 327-406 26-101 (101)
222 2dnq_A RNA-binding protein 4B; 99.6 4E-15 1.4E-19 117.8 11.4 75 228-308 5-80 (90)
223 1wg5_A Heterogeneous nuclear r 99.6 2.3E-15 7.9E-20 122.8 10.1 81 327-408 14-96 (104)
224 2dnn_A RNA-binding protein 12; 99.6 2.1E-15 7.1E-20 124.4 9.9 76 328-405 16-92 (109)
225 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.9E-16 2E-20 118.7 6.0 73 329-403 1-76 (77)
226 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.6E-20 127.2 8.7 79 327-406 16-98 (118)
227 2cqh_A IGF-II mRNA-binding pro 99.6 1.4E-15 4.9E-20 121.1 8.5 79 327-411 7-88 (93)
228 2cpe_A RNA-binding protein EWS 99.6 2.2E-15 7.5E-20 124.5 9.8 82 227-308 11-103 (113)
229 3n9u_C Cleavage and polyadenyl 99.6 1.7E-15 5.7E-20 133.0 9.6 77 230-306 54-135 (156)
230 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.9E-15 1.7E-19 126.8 12.2 78 325-403 60-140 (140)
231 1p1t_A Cleavage stimulation fa 99.6 1.6E-15 5.3E-20 123.3 8.6 78 230-307 7-87 (104)
232 1nu4_A U1A RNA binding domain; 99.6 1.4E-15 4.8E-20 122.0 8.2 80 327-408 7-91 (97)
233 1wex_A Hypothetical protein (r 99.6 3.1E-15 1.1E-19 122.3 10.4 76 229-308 13-91 (104)
234 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.8E-20 124.4 7.5 75 229-307 13-91 (102)
235 2ytc_A PRE-mRNA-splicing facto 99.6 4.8E-15 1.6E-19 115.9 10.9 73 327-404 11-85 (85)
236 1wi8_A EIF-4B, eukaryotic tran 99.6 2.3E-15 7.9E-20 122.6 9.3 79 229-308 13-94 (104)
237 2kvi_A Nuclear polyadenylated 99.6 1.5E-15 5.2E-20 121.9 8.0 80 326-412 8-89 (96)
238 2e5j_A Methenyltetrahydrofolat 99.6 2.5E-15 8.5E-20 120.8 9.1 77 327-407 18-95 (97)
239 3lqv_A PRE-mRNA branch site pr 99.6 2.8E-15 9.6E-20 124.2 9.6 79 327-407 7-86 (115)
240 1x4g_A Nucleolysin TIAR; struc 99.6 3.9E-15 1.3E-19 122.3 10.3 78 227-308 21-99 (109)
241 2ytc_A PRE-mRNA-splicing facto 99.6 2.4E-15 8.2E-20 117.6 8.6 75 228-306 9-85 (85)
242 2kt5_A RNA and export factor-b 99.6 5.7E-15 2E-19 124.2 11.4 82 228-309 32-115 (124)
243 1u6f_A Tcubp1, RNA-binding pro 99.6 3.6E-15 1.2E-19 127.8 10.3 82 227-308 38-122 (139)
244 2cqg_A TDP-43, TAR DNA-binding 99.6 6.1E-15 2.1E-19 119.7 11.1 81 227-308 11-93 (103)
245 2cpx_A Hypothetical protein FL 99.6 3.3E-15 1.1E-19 123.7 9.6 82 326-410 23-109 (115)
246 2fc8_A NCL protein; structure 99.6 7.2E-15 2.5E-19 119.0 11.4 81 326-410 13-96 (102)
247 1iqt_A AUF1, heterogeneous nuc 99.6 6.7E-16 2.3E-20 117.9 4.9 73 330-403 1-75 (75)
248 1why_A Hypothetical protein ri 99.6 4.6E-15 1.6E-19 119.2 10.0 76 228-307 14-92 (97)
249 2la4_A Nuclear and cytoplasmic 99.6 2.8E-15 9.5E-20 121.3 8.8 75 228-306 24-99 (101)
250 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.1E-15 3.9E-20 117.1 6.2 73 232-305 1-76 (77)
251 2rs2_A Musashi-1, RNA-binding 99.6 3.4E-15 1.2E-19 123.0 9.4 82 226-307 20-103 (109)
252 1wez_A HnRNP H', FTP-3, hetero 99.6 1.9E-15 6.6E-20 123.0 7.8 80 228-308 12-92 (102)
253 2hgl_A HNRPF protein, heteroge 99.6 1.6E-15 5.3E-20 130.1 7.5 79 228-306 41-123 (136)
254 2jvr_A Nucleolar protein 3; RN 99.6 1.7E-15 5.7E-20 125.3 7.5 77 228-306 25-103 (111)
255 2hgn_A Heterogeneous nuclear r 99.6 3.8E-16 1.3E-20 134.4 3.7 125 271-410 1-127 (139)
256 2jwn_A Embryonic polyadenylate 99.6 3.1E-15 1.1E-19 125.7 9.2 80 229-308 34-115 (124)
257 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.2E-15 4E-20 123.6 6.3 78 228-306 16-96 (100)
258 3ex7_B RNA-binding protein 8A; 99.6 3.5E-15 1.2E-19 125.7 9.5 81 228-308 19-102 (126)
259 2cpj_A Non-POU domain-containi 99.6 4E-15 1.4E-19 120.0 9.2 76 228-307 12-88 (99)
260 1whx_A Hypothetical protein ri 99.6 5.3E-15 1.8E-19 122.2 10.2 77 327-408 9-86 (111)
261 2ki2_A SS-DNA binding protein 99.6 6.3E-16 2.1E-20 122.4 4.3 76 232-308 2-80 (90)
262 2dis_A Unnamed protein product 99.6 6.4E-15 2.2E-19 120.8 10.5 80 229-308 6-92 (109)
263 2cpj_A Non-POU domain-containi 99.6 4.4E-15 1.5E-19 119.7 9.3 78 326-408 13-91 (99)
264 2ek1_A RNA-binding protein 12; 99.6 1.5E-15 5.1E-20 121.4 6.4 77 230-306 14-93 (95)
265 2hgl_A HNRPF protein, heteroge 99.6 1.5E-15 5E-20 130.2 6.8 79 327-406 43-125 (136)
266 1x4b_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 122.7 10.1 79 230-308 26-106 (116)
267 1iqt_A AUF1, heterogeneous nuc 99.6 8.4E-16 2.9E-20 117.3 4.6 73 233-305 1-75 (75)
268 2dgw_A Probable RNA-binding pr 99.6 6.6E-15 2.3E-19 116.8 9.9 79 228-307 7-86 (91)
269 1fj7_A Nucleolin RBD1, protein 99.6 9E-16 3.1E-20 124.2 4.9 81 327-409 16-98 (101)
270 2cq4_A RNA binding motif prote 99.6 2.6E-15 8.9E-20 124.3 7.8 77 230-306 24-102 (114)
271 1wg5_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 121.5 8.6 80 228-307 12-93 (104)
272 2cpy_A RNA-binding protein 12; 99.6 1.7E-15 5.9E-20 125.7 6.6 79 228-306 12-92 (114)
273 2db1_A Heterogeneous nuclear r 99.6 2.1E-15 7.3E-20 126.0 7.2 79 228-306 14-96 (118)
274 2cqp_A RNA-binding protein 12; 99.6 2.4E-15 8.1E-20 121.0 7.1 78 229-306 13-93 (98)
275 2xs2_A Deleted in azoospermia- 99.6 3.2E-15 1.1E-19 121.2 7.7 80 327-408 8-88 (102)
276 2jvo_A Nucleolar protein 3; nu 99.6 6.8E-15 2.3E-19 121.0 9.7 76 226-307 26-102 (108)
277 1x5o_A RNA binding motif, sing 99.6 8.9E-15 3E-19 121.0 10.5 80 227-306 21-110 (114)
278 2e5j_A Methenyltetrahydrofolat 99.6 7.3E-15 2.5E-19 118.1 9.7 77 228-307 16-93 (97)
279 2a3j_A U1 small nuclear ribonu 99.6 5.1E-15 1.8E-19 125.4 9.1 78 229-307 27-109 (127)
280 1x4c_A Splicing factor, argini 99.6 1.2E-14 4.1E-19 119.3 11.1 75 229-308 13-93 (108)
281 1whx_A Hypothetical protein ri 99.6 5.1E-15 1.8E-19 122.3 8.8 75 230-308 9-84 (111)
282 2xnq_A Nuclear polyadenylated 99.6 8.6E-15 2.9E-19 117.9 9.8 75 227-307 18-94 (97)
283 1h2v_Z 20 kDa nuclear CAP bind 99.6 6.8E-15 2.3E-19 128.8 9.9 80 228-307 36-118 (156)
284 2e5g_A U6 snRNA-specific termi 99.6 1.3E-14 4.5E-19 115.9 10.7 76 229-307 6-81 (94)
285 2lmi_A GRSF-1, G-rich sequence 99.6 1.2E-15 4.2E-20 125.1 4.7 79 327-406 10-92 (107)
286 2m2b_A RNA-binding protein 10; 99.6 2.1E-15 7.3E-20 128.2 6.3 80 228-308 20-108 (131)
287 2dnn_A RNA-binding protein 12; 99.6 5.5E-15 1.9E-19 121.8 8.5 75 231-306 16-91 (109)
288 2dgt_A RNA-binding protein 30; 99.6 1.5E-14 5E-19 115.1 10.6 75 228-308 7-82 (92)
289 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.4E-15 2.2E-19 126.0 9.0 78 228-305 60-140 (140)
290 3egn_A RNA-binding protein 40; 99.6 4.2E-15 1.5E-19 128.1 7.9 82 327-410 44-134 (143)
291 2dnp_A RNA-binding protein 14; 99.6 8.9E-15 3E-19 115.8 9.1 75 228-308 6-81 (90)
292 1wg1_A KIAA1579 protein, homol 99.6 8.1E-15 2.8E-19 115.7 8.5 74 328-407 5-79 (88)
293 1x5p_A Negative elongation fac 99.6 3.1E-14 1.1E-18 114.3 12.1 76 327-409 14-90 (97)
294 1x4f_A Matrin 3; structural ge 99.6 4.4E-15 1.5E-19 122.8 7.0 81 325-410 22-106 (112)
295 2kvi_A Nuclear polyadenylated 99.6 8.3E-15 2.8E-19 117.6 8.4 75 228-308 7-83 (96)
296 1wel_A RNA-binding protein 12; 99.6 3.3E-15 1.1E-19 125.8 6.2 79 327-406 24-104 (124)
297 3q2s_C Cleavage and polyadenyl 99.6 6.4E-15 2.2E-19 137.4 8.8 79 327-406 67-150 (229)
298 2lmi_A GRSF-1, G-rich sequence 99.6 2.7E-15 9.4E-20 123.0 5.5 79 228-306 8-90 (107)
299 3zzy_A Polypyrimidine tract-bi 99.5 2.5E-14 8.6E-19 121.1 11.3 76 328-407 28-107 (130)
300 2e5g_A U6 snRNA-specific termi 99.5 4E-14 1.4E-18 113.0 11.9 78 327-408 7-84 (94)
301 2hgm_A HNRPF protein, heteroge 99.5 5.3E-15 1.8E-19 125.0 6.8 77 327-405 41-120 (126)
302 2fc9_A NCL protein; structure 99.5 1.5E-14 5.2E-19 116.9 9.2 78 228-308 12-91 (101)
303 1nu4_A U1A RNA binding domain; 99.5 4E-15 1.4E-19 119.3 5.6 79 228-307 5-88 (97)
304 2e44_A Insulin-like growth fac 99.5 2.1E-14 7.3E-19 114.9 9.8 78 327-407 14-93 (96)
305 2dgu_A Heterogeneous nuclear r 99.5 1.4E-14 4.7E-19 117.8 8.7 74 229-308 9-83 (103)
306 2lcw_A RNA-binding protein FUS 99.3 4.8E-16 1.7E-20 129.2 0.0 82 327-409 6-98 (116)
307 1x4f_A Matrin 3; structural ge 99.5 5.8E-15 2E-19 122.1 6.4 76 228-307 22-101 (112)
308 2dha_A FLJ20171 protein; RRM d 99.5 5.4E-15 1.9E-19 124.5 5.9 79 326-405 21-104 (123)
309 2cpd_A Apobec-1 stimulating pr 99.5 4.7E-14 1.6E-18 113.7 11.2 74 229-308 13-89 (99)
310 2voo_A Lupus LA protein; RNA-b 99.5 7.9E-14 2.7E-18 126.6 13.8 120 280-407 63-188 (193)
311 3d2w_A TAR DNA-binding protein 99.5 3.1E-14 1.1E-18 112.8 9.8 75 326-407 9-85 (89)
312 2cpx_A Hypothetical protein FL 99.5 1.8E-14 6.2E-19 119.2 8.7 79 228-308 22-105 (115)
313 1wel_A RNA-binding protein 12; 99.5 3.8E-15 1.3E-19 125.4 4.7 79 228-306 22-102 (124)
314 1wf1_A RNA-binding protein RAL 99.5 1.8E-14 6E-19 118.6 8.6 73 229-307 25-99 (110)
315 1sjr_A Polypyrimidine tract-bi 99.5 2.8E-14 9.5E-19 125.4 10.3 77 328-407 46-125 (164)
316 2f3j_A RNA and export factor b 99.5 1.5E-14 5.1E-19 129.6 8.6 82 327-409 87-170 (177)
317 3q2s_C Cleavage and polyadenyl 99.5 1.4E-14 4.8E-19 135.1 8.8 77 230-306 67-148 (229)
318 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.3E-14 8E-19 126.6 9.6 79 229-307 70-151 (165)
319 1wg1_A KIAA1579 protein, homol 99.5 1.3E-14 4.5E-19 114.5 7.1 74 230-308 4-78 (88)
320 2hgm_A HNRPF protein, heteroge 99.5 1.1E-14 3.7E-19 123.1 7.0 78 228-306 39-119 (126)
321 2dha_A FLJ20171 protein; RRM d 99.5 1E-14 3.5E-19 122.8 6.7 78 229-306 21-103 (123)
322 1fjc_A Nucleolin RBD2, protein 99.5 9.6E-15 3.3E-19 116.9 6.2 77 228-307 13-90 (96)
323 2cqh_A IGF-II mRNA-binding pro 99.5 1.1E-14 3.9E-19 115.8 6.6 76 228-308 5-83 (93)
324 2pe8_A Splicing factor 45; RRM 99.5 7.6E-14 2.6E-18 114.2 11.6 79 326-405 6-93 (105)
325 2diu_A KIAA0430 protein; struc 99.5 4.2E-14 1.4E-18 112.0 9.5 74 329-411 10-89 (96)
326 1fj7_A Nucleolin RBD1, protein 99.5 3.8E-15 1.3E-19 120.5 3.4 78 229-307 15-94 (101)
327 2cq2_A Hypothetical protein LO 99.5 4.3E-14 1.5E-18 117.0 9.6 78 326-408 23-108 (114)
328 2hgn_A Heterogeneous nuclear r 99.5 6.1E-15 2.1E-19 126.8 4.4 79 228-307 43-122 (139)
329 2e44_A Insulin-like growth fac 99.5 3.6E-14 1.2E-18 113.5 8.5 77 229-307 13-91 (96)
330 2hzc_A Splicing factor U2AF 65 99.5 7E-14 2.4E-18 109.6 9.8 71 327-402 5-86 (87)
331 3d2w_A TAR DNA-binding protein 99.5 4E-14 1.4E-18 112.2 8.4 73 228-306 8-82 (89)
332 2cq2_A Hypothetical protein LO 99.5 1.7E-14 5.9E-19 119.4 6.5 74 229-306 23-104 (114)
333 2e5i_A Heterogeneous nuclear r 99.5 7.4E-14 2.5E-18 117.6 10.3 74 329-407 26-103 (124)
334 1x5p_A Negative elongation fac 99.5 1.2E-13 4.2E-18 110.8 11.2 75 228-308 12-87 (97)
335 3beg_B Splicing factor, argini 99.5 3.9E-14 1.3E-18 117.7 8.5 75 328-408 16-96 (115)
336 2lcw_A RNA-binding protein FUS 99.2 1.7E-15 5.9E-20 125.9 0.0 80 228-307 4-94 (116)
337 1wf0_A TDP-43, TAR DNA-binding 99.5 3.7E-14 1.3E-18 111.8 7.6 79 327-410 4-82 (88)
338 1sjr_A Polypyrimidine tract-bi 99.5 7.1E-14 2.4E-18 122.8 10.0 77 230-308 45-124 (164)
339 3egn_A RNA-binding protein 40; 99.5 2.3E-14 7.7E-19 123.5 6.8 80 228-308 42-130 (143)
340 2fc8_A NCL protein; structure 99.5 6.6E-14 2.3E-18 113.3 9.0 79 227-308 11-92 (102)
341 2xs2_A Deleted in azoospermia- 99.5 2E-14 6.9E-19 116.4 5.8 76 230-306 8-84 (102)
342 2hzc_A Splicing factor U2AF 65 99.5 3.7E-14 1.2E-18 111.2 7.0 71 230-304 5-86 (87)
343 3beg_B Splicing factor, argini 99.5 5.9E-14 2E-18 116.6 8.5 72 230-306 15-92 (115)
344 2f3j_A RNA and export factor b 99.5 6E-14 2E-18 125.6 8.9 80 229-308 86-167 (177)
345 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 117.2 9.7 75 231-308 28-106 (130)
346 2bz2_A Negative elongation fac 99.5 8.4E-14 2.9E-18 116.9 8.7 78 326-410 37-115 (121)
347 2diu_A KIAA0430 protein; struc 99.5 1.5E-13 5.2E-18 108.8 8.7 71 230-308 7-84 (96)
348 1wf0_A TDP-43, TAR DNA-binding 99.5 6.1E-14 2.1E-18 110.5 6.3 76 229-308 3-78 (88)
349 2e5i_A Heterogeneous nuclear r 99.5 2.4E-13 8.3E-18 114.4 10.3 72 233-308 27-102 (124)
350 2dnl_A Cytoplasmic polyadenyla 99.4 2.3E-13 7.9E-18 112.7 9.5 73 229-304 6-84 (114)
351 2voo_A Lupus LA protein; RNA-b 99.4 2.5E-13 8.7E-18 123.2 9.8 78 230-307 108-186 (193)
352 2bz2_A Negative elongation fac 99.4 3E-13 1E-17 113.4 9.2 75 228-308 36-111 (121)
353 2dit_A HIV TAT specific factor 99.4 9.2E-13 3.1E-17 108.8 11.7 81 325-408 12-104 (112)
354 2j8a_A Histone-lysine N-methyl 99.4 2.4E-13 8.1E-18 113.8 7.5 75 232-306 3-94 (136)
355 2dnl_A Cytoplasmic polyadenyla 99.4 4.6E-13 1.6E-17 110.9 9.2 72 327-402 7-84 (114)
356 2j8a_A Histone-lysine N-methyl 99.4 3.6E-13 1.2E-17 112.7 8.2 77 329-406 3-96 (136)
357 2pe8_A Splicing factor 45; RRM 99.4 7.1E-13 2.4E-17 108.4 9.9 78 229-306 6-92 (105)
358 3u1l_A PRE-mRNA-splicing facto 99.4 3.7E-13 1.3E-17 125.7 8.9 81 327-412 133-235 (240)
359 3v4m_A Splicing factor U2AF 65 99.4 7.4E-13 2.5E-17 108.3 9.4 78 327-405 4-96 (105)
360 3u1l_A PRE-mRNA-splicing facto 99.4 8.1E-13 2.8E-17 123.4 8.8 77 228-308 131-229 (240)
361 1jmt_A Splicing factor U2AF 35 99.4 4.1E-13 1.4E-17 109.6 5.4 70 333-403 20-103 (104)
362 3ue2_A Poly(U)-binding-splicin 99.3 4.2E-12 1.4E-16 105.9 9.4 79 326-405 18-108 (118)
363 2dit_A HIV TAT specific factor 99.3 4.3E-12 1.5E-16 104.7 9.4 79 227-307 11-101 (112)
364 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.9E-11 6.6E-16 98.9 11.6 67 338-410 27-94 (100)
365 1jmt_A Splicing factor U2AF 35 99.3 2E-12 7E-17 105.4 4.3 70 236-305 20-103 (104)
366 3v4m_A Splicing factor U2AF 65 99.2 9.5E-12 3.3E-16 101.6 7.3 77 230-306 4-95 (105)
367 3s6e_A RNA-binding protein 39; 99.2 2.5E-11 8.4E-16 100.6 9.4 76 327-405 6-92 (114)
368 3tht_A Alkylated DNA repair pr 99.2 3.9E-11 1.3E-15 117.8 9.6 75 325-404 15-97 (345)
369 3ue2_A Poly(U)-binding-splicin 99.2 5E-11 1.7E-15 99.4 8.1 77 230-306 19-107 (118)
370 3tht_A Alkylated DNA repair pr 99.1 4.9E-11 1.7E-15 117.0 8.1 75 228-306 15-97 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.9E-10 1.3E-14 91.1 11.6 63 241-308 27-90 (100)
372 3s6e_A RNA-binding protein 39; 99.1 3.4E-10 1.1E-14 93.7 8.5 76 229-306 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 1.5E-09 5.1E-14 85.1 9.1 73 327-406 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 98.9 6.7E-09 2.3E-13 86.4 8.6 73 326-403 16-93 (121)
375 1owx_A Lupus LA protein, SS-B, 98.8 1.2E-08 4.1E-13 84.9 9.1 73 229-305 16-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 1E-08 3.5E-13 80.4 7.2 72 230-307 6-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.7 1.6E-08 5.4E-13 79.7 5.9 73 326-405 13-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.7 3.6E-08 1.2E-12 90.7 7.6 64 340-404 141-211 (222)
379 2l9w_A U4/U6 snRNA-associated- 98.6 2.1E-07 7.1E-12 74.8 9.0 70 328-402 21-96 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 3.5E-08 1.2E-12 77.7 4.4 71 229-305 13-92 (95)
381 3dxb_A Thioredoxin N-terminall 98.5 1.8E-07 6.2E-12 86.0 7.7 64 243-306 141-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.1 7E-06 2.4E-10 66.0 7.5 73 228-304 18-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.9 0.00011 3.9E-09 58.4 10.0 89 229-341 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.6 0.0002 6.9E-09 57.2 7.9 75 328-407 5-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.3 0.003 1E-07 50.2 10.7 73 328-406 8-84 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.0 0.0047 1.6E-07 50.6 10.3 70 328-403 24-94 (119)
387 1wey_A Calcipressin 1; structu 96.9 0.0027 9.2E-08 50.7 7.5 73 230-306 4-82 (104)
388 1whv_A Poly(A)-specific ribonu 96.9 0.0032 1.1E-07 49.6 7.5 56 228-290 13-69 (100)
389 1wwh_A Nucleoporin 35, nucleop 96.9 0.0039 1.3E-07 51.1 8.2 71 230-305 23-94 (119)
390 1uw4_A UPF3X; nonsense mediate 96.7 0.0079 2.7E-07 47.0 8.2 74 329-403 2-85 (91)
391 1uw4_A UPF3X; nonsense mediate 96.6 0.0066 2.2E-07 47.5 7.7 65 232-296 2-71 (91)
392 3ctr_A Poly(A)-specific ribonu 96.3 0.0048 1.7E-07 48.6 5.1 53 232-291 7-60 (101)
393 3p3d_A Nucleoporin 53; structu 95.8 0.012 4.2E-07 48.8 5.5 75 329-405 8-98 (132)
394 1whv_A Poly(A)-specific ribonu 95.6 0.034 1.2E-06 43.7 7.1 52 329-388 17-69 (100)
395 3pq1_A Poly(A) RNA polymerase; 94.9 0.013 4.5E-07 59.3 3.5 69 223-295 45-113 (464)
396 3p3d_A Nucleoporin 53; structu 94.5 0.029 9.9E-07 46.6 4.0 75 231-306 7-97 (132)
397 3ctr_A Poly(A)-specific ribonu 94.3 0.062 2.1E-06 42.4 5.2 53 329-389 7-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 94.1 0.028 9.5E-07 56.8 3.6 59 325-388 50-108 (464)
399 2l08_A Regulator of nonsense t 94.0 0.058 2E-06 42.4 4.5 75 328-403 9-93 (97)
400 2l08_A Regulator of nonsense t 93.7 0.045 1.6E-06 43.1 3.4 66 231-296 9-79 (97)
401 3d45_A Poly(A)-specific ribonu 82.4 2.5 8.7E-05 43.1 7.4 54 231-291 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 61.4 20 0.00067 36.5 8.0 53 329-389 441-494 (507)
403 4e8u_A Putative uncharacterize 39.8 44 0.0015 28.7 5.4 57 233-290 14-82 (172)
404 3j21_T 50S ribosomal protein L 37.8 69 0.0024 24.2 5.7 56 330-386 24-80 (86)
405 1xn9_A 30S ribosomal protein S 28.7 1.1E+02 0.0037 23.8 5.6 47 338-385 28-80 (101)
406 2g0c_A ATP-dependent RNA helic 27.3 50 0.0017 23.7 3.3 59 339-404 12-75 (76)
407 1vq8_S 50S ribosomal protein L 26.5 1E+02 0.0034 23.2 4.9 55 330-385 23-78 (85)
408 1ywx_A 30S ribosomal protein S 25.1 1.1E+02 0.0037 23.9 4.9 46 338-384 28-79 (102)
409 2v94_A RPS24, 30S ribosomal pr 23.3 1.2E+02 0.0042 23.8 5.0 46 338-384 37-88 (107)
410 3u5e_X 60S ribosomal protein L 23.0 1.2E+02 0.0041 25.1 5.1 55 330-385 80-135 (142)
411 3u5c_Y RP50, 40S ribosomal pro 22.2 1.8E+02 0.0061 23.9 5.9 46 338-384 33-84 (135)
412 2zkr_s 60S ribosomal protein L 21.3 1.3E+02 0.0044 25.3 5.0 56 330-386 94-150 (156)
413 4a17_R RPL23A, 60S ribosomal p 21.3 1.3E+02 0.0044 25.2 4.9 55 330-385 88-143 (150)
414 4eyt_A Telomerase associated p 20.6 2.8E+02 0.0096 21.0 8.5 67 326-402 10-78 (129)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.5e-41 Score=323.85 Aligned_cols=236 Identities=17% Similarity=0.170 Sum_probs=204.9
Q ss_pred CCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHH
Q 014866 128 NQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVR 205 (417)
Q Consensus 128 ~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~ 205 (417)
..+++||||||++++| |+++|++|| |.++++ +. ++|||||. |.+.+ +| ..|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~----------~~g~afV~-f~~~~-------~A-~~A~ 74 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DK----------YKGTAFVT-LLNGE-------QA-EAAI 74 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ET----------TTTEEEEE-ESSHH-------HH-HHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ec----------CCCEEEEE-eCCHH-------HH-HHHH
Confidence 3478999999999988 999999999 999987 44 78999999 99998 88 8888
Q ss_pred hhcccCC--CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCH
Q 014866 206 RKKSFGQ--GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDE 281 (417)
Q Consensus 206 ~~~~~~~--gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~ 281 (417)
+.++... |++ +++.. ....++|||+|||+++|+++|+++|+.||.|.++.++.+.. .++|||||+|.+.
T Consensus 75 ~~l~~~~~~g~~---i~v~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 147 (284)
T 3smz_A 75 NAFHQSRLRERE---LSVQL----QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKK 147 (284)
T ss_dssp HHHTTCEETTEE---CEEEE----CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred HHcCCCeeCCeE---EEEEe----cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCH
Confidence 8766543 555 44433 23567999999999999999999999999999999998764 3699999999999
Q ss_pred HHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCC-CHHHHHHHHhhcCCceEEE
Q 014866 282 EGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV-TQADVKLFFESVCGEVYRL 359 (417)
Q Consensus 282 e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-te~dL~~~F~~f~G~I~~v 359 (417)
++|.+|+. |+|..+.|++|.|.++...... ......++|||+|||..+ ++++|+++|++ ||.|.++
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v 215 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-----------PALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFC 215 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGGCC-----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEE
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-----------cccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEE
Confidence 99999997 9999999999999998543211 112345899999999995 99999999999 5999999
Q ss_pred EEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 014866 360 RLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVR 408 (417)
Q Consensus 360 ~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~ 408 (417)
.|.++. |.++|||||+|.+.++|.+|+. |||..++|++|.|.|+++...
T Consensus 216 ~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 216 QLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999986 7889999999999999999999 999999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.1e-41 Score=326.22 Aligned_cols=242 Identities=19% Similarity=0.217 Sum_probs=200.0
Q ss_pred CCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHH
Q 014866 128 NQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVR 205 (417)
Q Consensus 128 ~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~ 205 (417)
..+++||||||+++++ |+++|++||+|.+|+++++..+ ++|||||. |.+.+ +| ..|+
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~------------~~g~afV~-f~~~~-------~A-~~A~ 98 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK------------NFRFARIE-FARYD-------GA-LAAI 98 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS------------SSEEEEEE-ESSHH-------HH-HHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC------------CcEEEEEE-ECCHH-------HH-HHHH
Confidence 3578999999999988 9999999999999999998743 45999999 99998 88 8888
Q ss_pred hhcccCC-CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCC-CeeEEEEecCCC-CCceEEEEEecCHH
Q 014866 206 RKKSFGQ-GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPN-SVLRFAFIEFTDEE 282 (417)
Q Consensus 206 ~~~~~~~-gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~-~skG~aFV~F~~~e 282 (417)
+..+... |++ +++.. ...++|||+|||+++++++|+++|+.|| .|.+|+++.+.. .++|||||+|.+.+
T Consensus 99 ~~~~~~~~g~~---i~v~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 99 TKTHKVVGQNE---IIVSH-----LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp TTTTCEETTEE---CEEEE-----CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred HhCCcEeCCcE---EEEEE-----CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 6333222 555 33332 3578999999999999999999999999 999999998775 47899999999999
Q ss_pred HHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCC-CCHHHHHHHHhhcCCceEEEE
Q 014866 283 GARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLR 360 (417)
Q Consensus 283 ~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~dL~~~F~~f~G~I~~v~ 360 (417)
+|.+|+. |+|..+.|++|.|.++........ ........++|||+|||.. +++++|+++|++ ||.|..|+
T Consensus 171 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~ 242 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEGYTLVTKVSNPLEKSKR-------TDSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKIN 242 (292)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEE
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCccccc-------ccccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEE
Confidence 9999999 999999999999999854321111 0112335689999999999 999999999999 59999999
Q ss_pred EeccC---CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 014866 361 LLGDY---HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 361 i~~d~---~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~ 406 (417)
++++. +.++|||||+|.+.++|.+|+.|||..|+|++|.|.|+++.
T Consensus 243 i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 243 IPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred EEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 99875 68899999999999999999999999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.7e-33 Score=259.07 Aligned_cols=166 Identities=25% Similarity=0.388 Sum_probs=148.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++|+++|+++|++||.|.+|+|++|+. .++|||||+|.+.++|.+|++ +++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999875 469999999999999999998 999999999999998
Q ss_pred CCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHH
Q 014866 305 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 305 s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~ 384 (417)
+... .........+|||+|||..+++++|+++|++ ||.|.+|+|+++.+.++|||||+|.+.++|.+
T Consensus 92 ~~~~------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 92 SQRD------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp CCCC------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESSHHHHHH
T ss_pred cccc------------ccccccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccCCCCceEEEEEeCCHHHHHH
Confidence 6421 1122334579999999999999999999999 59999999999988789999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCC
Q 014866 385 ALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 385 Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
|++ |||..|+|++|.|.|+++.
T Consensus 159 Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 159 AIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHhCCCEECCEEEEEEEcCCC
Confidence 998 9999999999999999764
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=241.44 Aligned_cols=161 Identities=21% Similarity=0.336 Sum_probs=146.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAI 309 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~ 309 (417)
|+|||+|||.++|+++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ ++|..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999999875 479999999999999999997 99999999999999975332
Q ss_pred CCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH
Q 014866 310 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN 387 (417)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~ 387 (417)
. .......+|||+|||..+++++|+++|++ ||.|.++.+.++. +.++|||||+|.+.++|.+|+.
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 1 11234589999999999999999999999 5999999999875 7899999999999999999999
Q ss_pred -hCCceeCCeeeEEeecCC
Q 014866 388 -CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 388 -lng~~l~G~~l~V~~a~~ 405 (417)
|||..++|++|+|.||++
T Consensus 148 ~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HhCCCccCCcEEEEEecCC
Confidence 999999999999999974
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.9e-32 Score=245.12 Aligned_cols=177 Identities=18% Similarity=0.262 Sum_probs=147.1
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhcCcccCCcceEEcc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 304 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~ 304 (417)
.+...++|||+|||+++|+++|+++|+.||.|.+|.++.++.+ ++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 3456789999999999999999999999999999999998753 69999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHH
Q 014866 305 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESA 382 (417)
Q Consensus 305 s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A 382 (417)
+........ .......++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|
T Consensus 89 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 89 AVSREDSQR--------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCC-------------------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ccCcccccc--------cccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 754321111 111234589999999999999999999999 5999999999985 78999999999999999
Q ss_pred HHHHHhCCceeCCeeeEEeecCCCCCCCCC
Q 014866 383 IAALNCSGVVLGSLPIRVSPSKTPVRPRAP 412 (417)
Q Consensus 383 ~~Al~lng~~l~G~~l~V~~a~~~~~~~~~ 412 (417)
.+|+..+|..++|+.|.|.|+.+.......
T Consensus 160 ~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 160 DKIVIQKYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HHHHHCSCCEETTEECEEEECC--------
T ss_pred HHHHHhCCcEECCEEEEEEecCChhHhccc
Confidence 999997899999999999999887655443
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=8.3e-32 Score=247.87 Aligned_cols=180 Identities=24% Similarity=0.324 Sum_probs=151.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||.++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3568999999999999999999999999999999998864 469999999999999999999 9999999999999886
Q ss_pred CCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHH
Q 014866 306 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 383 (417)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~ 383 (417)
........ ............++|||+|||..+++++|+++|++ ||.|..|++.++. +.++|||||+|.+.++|.
T Consensus 106 ~~~~~~~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 106 SNIGQAQP---IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp SCCGGGHH---HHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCccccch---hhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 42210000 00000112345689999999999999999999999 5999999999985 788999999999999999
Q ss_pred HHHH-hCCceeCCeeeEEeecCCCCCCCCC
Q 014866 384 AALN-CSGVVLGSLPIRVSPSKTPVRPRAP 412 (417)
Q Consensus 384 ~Al~-lng~~l~G~~l~V~~a~~~~~~~~~ 412 (417)
+|++ |||..|+|+.|+|.|+.++..+..+
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~~~ 211 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPLLT 211 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTTSC
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCCCC
Confidence 9999 9999999999999999988665543
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=2e-31 Score=235.50 Aligned_cols=159 Identities=24% Similarity=0.412 Sum_probs=144.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
..++|||+|||+++++++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999988653 68999999999999999998 99999999999999975
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~ 384 (417)
.... ....++|||+|||..+++++|+++|++ ||.|..+.++++. +.++|||||+|.+.++|.+
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 3211 123489999999999999999999999 5999999999986 6889999999999999999
Q ss_pred HHH-hCCceeCC--eeeEEeec
Q 014866 385 ALN-CSGVVLGS--LPIRVSPS 403 (417)
Q Consensus 385 Al~-lng~~l~G--~~l~V~~a 403 (417)
|++ |||..+.| ++|+|.||
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 999 99999988 99999986
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=5.1e-31 Score=232.22 Aligned_cols=158 Identities=23% Similarity=0.401 Sum_probs=143.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
.++|||+|||+++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999874 468999999999999999998 999999999999999753
Q ss_pred CCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHH
Q 014866 308 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~A 385 (417)
.. ......+|||+|||..+++++|+++|++ ||.|..+.+.++. |.++|||||+|.+.++|.+|
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 21 1223478999999999999999999999 5999999999875 67899999999999999999
Q ss_pred HH-hCCceeCCee--eEEeec
Q 014866 386 LN-CSGVVLGSLP--IRVSPS 403 (417)
Q Consensus 386 l~-lng~~l~G~~--l~V~~a 403 (417)
++ |||..+.|+. |+|.||
T Consensus 147 ~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 147 IKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCccCCCccceEEEeC
Confidence 99 9999999975 999886
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=4.9e-31 Score=234.31 Aligned_cols=161 Identities=23% Similarity=0.324 Sum_probs=141.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHHH-hcCcccC---CcceE
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLG---FYPVR 301 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----skG~aFV~F~~~e~A~~Al~-lng~~i~---g~~l~ 301 (417)
+.++|||+|||+++|+++|+++|++||.|.+|++++++.+ ++|||||+|.+.++|.+|++ |+|..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5689999999999999999999999999999999998754 58999999999999999998 9998875 67888
Q ss_pred EccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHH
Q 014866 302 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAE 380 (417)
Q Consensus 302 V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e 380 (417)
+.++..... .....++|||+|||..+++++|+++|++ ||.|.++.++++. |.++|||||+|.+.+
T Consensus 82 ~~~~~~~~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEKN-------------NAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGCC-------------SCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Ecccccccc-------------ccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 877642211 1224589999999999999999999999 5999999999986 788999999999999
Q ss_pred HHHHHHH-hCCceeC---CeeeEEeecC
Q 014866 381 SAIAALN-CSGVVLG---SLPIRVSPSK 404 (417)
Q Consensus 381 ~A~~Al~-lng~~l~---G~~l~V~~a~ 404 (417)
+|.+|++ |||..+. |++|.|.||.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999998 9998776 4999999984
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.4e-31 Score=236.47 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=144.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++. .++|||||+|.+.++|.+|++ ++..+.|+.|.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 457999999999999999999999999999999999864 479999999999999999998 45789999999888631
Q ss_pred CCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHH
Q 014866 308 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~A 385 (417)
.......++|||+|||..+++++|+++|++ ||.|.++.+..+. +.++|||||+|.+.++|.+|
T Consensus 81 --------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 81 --------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp --------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred --------------hhhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 112234579999999999999999999999 5999999999985 78999999999999999999
Q ss_pred HHhCCceeCCeeeEEeecCCC
Q 014866 386 LNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 386 l~lng~~l~G~~l~V~~a~~~ 406 (417)
++++|..++|++|+|.||++.
T Consensus 146 ~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 146 CQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHCSEECSSSSCEEEEECCCC
T ss_pred HhCCCEEeCCeEEEEeecCCC
Confidence 999999999999999999874
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=3.5e-30 Score=237.21 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=141.8
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
..++|||+||| +.+|+++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++ |||..+.|++|.|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 56899999999 899999999999999999999998764 5999999999999999998 999999999999999864
Q ss_pred CCC-CCCCC-----------CC----CCCch-------hhccccceEEEeCCCCCCCHHHHHHHHhhcCCce--EEEEEe
Q 014866 308 AIA-PVNPT-----------FL----PRTED-------EREMCARTIYCTNIDKKVTQADVKLFFESVCGEV--YRLRLL 362 (417)
Q Consensus 308 ~~~-~~~~~-----------~~----~~~~~-------~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I--~~v~i~ 362 (417)
... +..+. +. .+... ....+.++|||+|||+++|+++|+++|++| |.| .++++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~-G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL-GVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH-TCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEEE
Confidence 321 11000 00 00000 002346789999999999999999999995 999 899999
Q ss_pred ccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe----eeEEeec
Q 014866 363 GDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL----PIRVSPS 403 (417)
Q Consensus 363 ~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~----~l~V~~a 403 (417)
.+.+.++|||||+|.+.++|.+|+. |||..|.|+ ++.|+|+
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8887678999999999999999999 999999988 5777664
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=6.2e-30 Score=227.00 Aligned_cols=156 Identities=23% Similarity=0.346 Sum_probs=140.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 298 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~ 298 (417)
+.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+.+||..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 46899999999999999999999999 7 7888887654 5899999999999999999999999999
Q ss_pred ceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEe
Q 014866 299 PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEF 376 (417)
Q Consensus 299 ~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F 376 (417)
+|.|.++..... ....++|||+|||..+++++|+++|++ ||.|..+.+.++. +.++|||||+|
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEEe
Confidence 999998643211 112589999999999999999999999 5999999999984 78899999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 377 VMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 377 ~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
.+.++|.+|++ |||..++|++|.|.||.
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999 99999999999999973
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.4e-29 Score=229.91 Aligned_cols=174 Identities=21% Similarity=0.297 Sum_probs=145.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 298 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~ 298 (417)
..++|||+|||+++|+++|+++|+.| | .|.++.+.. ++|||||+|.+.++|.+|+.|||..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----~~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----TTTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----CCCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 46899999999999999999999999 5 677776654 35899999999999999999999999999
Q ss_pred ceEEccCCCCCCCCCCCCC-----CC-CchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCce
Q 014866 299 PVRVLPSKTAIAPVNPTFL-----PR-TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTR 370 (417)
Q Consensus 299 ~l~V~~s~~~~~~~~~~~~-----~~-~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG 370 (417)
+|.|.++............ +. .........++|||+|||..+++++|+++|++ ||.|..+.+.++. +.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCCCCCcce
Confidence 9999998654222111000 00 11111245689999999999999999999999 5999999999984 78899
Q ss_pred EEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCC
Q 014866 371 IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVR 408 (417)
Q Consensus 371 ~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~ 408 (417)
||||+|.+.++|.+|++ |||..++|+.|+|.|+++...
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999 999999999999999987754
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.2e-30 Score=232.59 Aligned_cols=164 Identities=17% Similarity=0.241 Sum_probs=140.0
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
.+...++|||+|||.++|+++|+++|..||.+..+.+.... ..++|||||+|.+.++|.+|++|||..+.|++|.|.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 34577899999999999999999999999977662222211 24689999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHH
Q 014866 306 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~A 385 (417)
..... ......++|||+|||..+++++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+|
T Consensus 89 ~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 89 KGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp CCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE---CSSSSCCSEEEEECSSHHHHHHH
T ss_pred CCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe---cCCCCCceEEEEEECCHHHHHHH
Confidence 53211 11234589999999999999999999999 5999877 44578999999999999999999
Q ss_pred HH-hCCceeCCeeeEEeecCCC
Q 014866 386 LN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 386 l~-lng~~l~G~~l~V~~a~~~ 406 (417)
+. |||..++|+.|+|.|+++.
T Consensus 153 ~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 153 LEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHTEEEETTEEEEEEECSSC
T ss_pred HHHhCCCEECCeEEEEEecCCC
Confidence 99 9999999999999999865
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.5e-29 Score=233.97 Aligned_cols=177 Identities=25% Similarity=0.314 Sum_probs=147.5
Q ss_pred hhccCCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceE
Q 014866 224 AQREEIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 301 (417)
Q Consensus 224 ~~~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~ 301 (417)
+.......++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++ |+|..+.|++|.
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 334456789999999999 99999999999999999999999886 5899999999999999998 999999999999
Q ss_pred EccCCCCCCCCCCC------------------CC-CCC--chhhccccceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEE
Q 014866 302 VLPSKTAIAPVNPT------------------FL-PRT--EDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRL 359 (417)
Q Consensus 302 V~~s~~~~~~~~~~------------------~~-~~~--~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v 359 (417)
|.++.......... +. +.. ......+.++|||+|||..+++++|+++|++ || .|.+|
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEE
Confidence 99986432111000 00 000 0011234689999999999999999999999 59 99999
Q ss_pred EEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecCCCC
Q 014866 360 RLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKTPV 407 (417)
Q Consensus 360 ~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~-G~~l~V~~a~~~~ 407 (417)
++.++ .+|||||+|.+.++|.+|++ |||..++ |++|+|.|+++++
T Consensus 183 ~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~i 229 (229)
T 2adc_A 183 KFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229 (229)
T ss_dssp EECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC
T ss_pred EEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCCC
Confidence 99663 36799999999999999999 9999999 9999999998763
No 16
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.2e-30 Score=241.28 Aligned_cols=156 Identities=22% Similarity=0.310 Sum_probs=138.3
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+++||||||++++| |+++|++||+|.+|+|++|+.+++ ++|||||. |.+.+ +| ++|++
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~----------~~G~afV~-F~~~~-------~A-~~Ai~ 75 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR----------SLGYAYVN-FQQPA-------DA-ERALD 75 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEE-ESSHH-------HH-HHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCC----------ccccccce-eCCHH-------HH-HHHHH
Confidence 478999999999988 999999999999999999999999 99999999 99998 88 88988
Q ss_pred hcccCC--Cccccccccchhh----ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecC
Q 014866 207 KKSFGQ--GKRRMNSRTSLAQ----REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD 280 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~ 280 (417)
.++... |+. +++..+. .......+|||+|||+++|+++|+++|+.||.|.+|+|+.+..+++|||||+|.+
T Consensus 76 ~~~~~~~~g~~---i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~ 152 (213)
T 4f02_A 76 TMNFDVIKGKP---VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFET 152 (213)
T ss_dssp HHTTCEETTEE---CEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESS
T ss_pred HhhhhhcCCcc---cccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCC
Confidence 877643 555 3333221 2223567899999999999999999999999999999999988789999999999
Q ss_pred HHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 281 EEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 281 ~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
.++|.+|++ |||..|+|++|.|.++.
T Consensus 153 ~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 153 QEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 999999998 99999999999999975
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2e-29 Score=229.59 Aligned_cols=171 Identities=26% Similarity=0.316 Sum_probs=144.1
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
.+++|||+|||+ ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++ |+|..+.|++|.|.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 468999999999 99999999999999999999999876 5899999999999999998 999999999999998864
Q ss_pred CCCCCCCC------------------CCC-C--CchhhccccceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccC
Q 014866 308 AIAPVNPT------------------FLP-R--TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY 365 (417)
Q Consensus 308 ~~~~~~~~------------------~~~-~--~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~ 365 (417)
........ +.+ . .......+.++|||+|||..+++++|+++|++ || .|.++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQK- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEESST-
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeC-
Confidence 32111000 000 0 00011234789999999999999999999999 59 9999999764
Q ss_pred CCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecCCCC
Q 014866 366 HHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKTPV 407 (417)
Q Consensus 366 ~~~kG~aFV~F~~~e~A~~Al~-lng~~l~-G~~l~V~~a~~~~ 407 (417)
.+|+|||+|.+.++|.+|+. |||..++ |++|+|.|+++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~i 198 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecccC
Confidence 36799999999999999999 9999999 9999999998763
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=9.4e-29 Score=237.47 Aligned_cols=173 Identities=23% Similarity=0.336 Sum_probs=143.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
....++|||+|||+++|+++|+ ++|+.||.|.+|++.+ ...++|||||+|.+.++|.+|++ |||..+.|++|+|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 4568899999999999999976 8999999999999987 33578999999999999999997 9999999999999
Q ss_pred ccCCCCCCCC---CCCC---------------------------------------------------------------
Q 014866 303 LPSKTAIAPV---NPTF--------------------------------------------------------------- 316 (417)
Q Consensus 303 ~~s~~~~~~~---~~~~--------------------------------------------------------------- 316 (417)
.+++...... ...+
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9875432100 0000
Q ss_pred -----------CC--------------------CCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC
Q 014866 317 -----------LP--------------------RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 365 (417)
Q Consensus 317 -----------~~--------------------~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~ 365 (417)
.+ ........+.++|||+|||..+++++|+++|++ ||.|.+|++.++.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecCC
Confidence 00 000012234688999999999999999999999 5999999998764
Q ss_pred CCCceEEEEEeCCHHHHHHHHH-hCCceeC-CeeeEEeecCC
Q 014866 366 HHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKT 405 (417)
Q Consensus 366 ~~~kG~aFV~F~~~e~A~~Al~-lng~~l~-G~~l~V~~a~~ 405 (417)
+|||||+|.+.++|.+|++ |||..+. |+.|+|.|++.
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 5799999999999999999 9999999 99999999973
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=3.8e-29 Score=241.42 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=141.1
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.+..+++|||||+|.+.++|.+|++++|..+.|++|.|.++.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 34567899999999999999999999999999999999988778999999999999999999999999999999999852
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccC-CCCceEEEEEeCCHHHHHH
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY-HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~ 384 (417)
.++|||+|||..+++++|+++|++ || .|.+|.++++. +.++|||||+|.+.++|.+
T Consensus 117 ---------------------~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 117 ---------------------ECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp ---------------------SCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred ---------------------CCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence 379999999999999999999999 59 99999999887 7889999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCCC
Q 014866 385 ALN-CSGVVLGSLPIRVSPSKTPVRP 409 (417)
Q Consensus 385 Al~-lng~~l~G~~l~V~~a~~~~~~ 409 (417)
|+. |||..+.|+.|.|.|+.+....
T Consensus 175 A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999 9999999999999999876543
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=7e-28 Score=231.62 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=141.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|+.|| |.+|.+ ..++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 34678999999999999999999999999 999988 3356899999999999999998 99999999999999852
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHH
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~ 384 (417)
..++|||+|||..+++++|+++|++ ||.|.++.++.+. |.++|||||+|.+.++|.+
T Consensus 94 --------------------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 94 --------------------TDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp --------------------CSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred --------------------CCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 1279999999999999999999999 5999999999875 7899999999999999999
Q ss_pred HHH-hCCceeCCeeeEEeecCCCCC
Q 014866 385 ALN-CSGVVLGSLPIRVSPSKTPVR 408 (417)
Q Consensus 385 Al~-lng~~l~G~~l~V~~a~~~~~ 408 (417)
|+. |||..++|+.|.|.|+.+...
T Consensus 153 A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 153 AKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCCC
Confidence 997 999999999999999987654
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=3e-29 Score=221.47 Aligned_cols=158 Identities=15% Similarity=0.213 Sum_probs=135.0
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+++||||||++++| |+++|++||+|.+|++++++.+++ ++|||||. |.+.+ +| +.|++
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~-f~~~~-------~a-~~A~~ 63 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR----------SRGFGFLS-FEKPS-------SV-DEVVK 63 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSS----------CCSCEEEE-ESSTH-------HH-HHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCC----------ccceEEEE-EccHH-------HH-HHHHh
Confidence 367999999999988 999999999999999999999998 99999999 99998 88 88888
Q ss_pred hcccCCCccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHH
Q 014866 207 KKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGA 284 (417)
Q Consensus 207 ~~~~~~gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A 284 (417)
......|+. +.+............++|||+|||.++|+++|+++|++||.|.+++++.++. .++|||||+|.+.++|
T Consensus 64 ~~~~~~g~~-i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 64 TQHILDGKV-IDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp SCCEETTEE-CCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred cccccCCeE-cccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 633233555 2222222222334567999999999999999999999999999999999864 4799999999999999
Q ss_pred HHHHHhcCcccCCcceEEccCC
Q 014866 285 RAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 285 ~~Al~lng~~i~g~~l~V~~s~ 306 (417)
.+|++++|..++|++|.|.++.
T Consensus 143 ~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 143 DRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHHHHCSEECSSSSCEEEEECC
T ss_pred HHHHhCCCEEeCCeEEEEeecC
Confidence 9999999999999999999975
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=7.4e-28 Score=229.44 Aligned_cols=154 Identities=27% Similarity=0.367 Sum_probs=140.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+. +||..+.|++|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 456689999999999999999999999999999999765 4899999999999999998 99999999999999974
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHH
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~A 385 (417)
. ..+|||+|||..+|+++|+++|++ ||.|.+|.++.+. |.++|||||+|.+.++|.+|
T Consensus 95 ~--------------------~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 95 H--------------------GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp C--------------------SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH
T ss_pred c--------------------CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH
Confidence 1 368999999999999999999999 5999999999986 78999999999999999999
Q ss_pred HH-h-CCceeC---CeeeEEeecCCC
Q 014866 386 LN-C-SGVVLG---SLPIRVSPSKTP 406 (417)
Q Consensus 386 l~-l-ng~~l~---G~~l~V~~a~~~ 406 (417)
+. | +|..+. |++|.|.++.+.
T Consensus 154 ~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 154 LERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHhcCCeEEecCCCceEEEeecccc
Confidence 99 8 556665 999999999765
No 23
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-28 Score=215.03 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=132.6
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
|++||||||++++| |+++|++||+|.+|++++++. +. ++|||||. |.+.+ +| ..|++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~----------~~g~afV~-f~~~~-------~a-~~A~~~ 60 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NK----------NVNYAFVE-YHQSH-------DA-NIALQT 60 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--C----------CEEEEEEE-ESSHH-------HH-HHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CC----------CCCEEEEE-eCCHH-------HH-HHHHHH
Confidence 67899999999988 999999999999999999986 45 89999999 99998 88 888876
Q ss_pred cccCC--Cccccccccchh----hccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEec
Q 014866 208 KSFGQ--GKRRMNSRTSLA----QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFT 279 (417)
Q Consensus 208 ~~~~~--gk~~~~~r~~~~----~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~ 279 (417)
++... |++ +++..+ .......++|||+|||.++|+++|+++|++||.|.++.++.++. .++|||||+|.
T Consensus 61 l~~~~~~g~~---i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 137 (166)
T 3md3_A 61 LNGKQIENNI---VKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 137 (166)
T ss_dssp HTTCEETTEE---CEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEES
T ss_pred cCCCccCCCe---eEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeC
Confidence 66543 555 333222 22344678999999999999999999999999999999998864 46999999999
Q ss_pred CHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 280 DEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 280 ~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
+.++|.+|+. |||..++|++|.|.+++
T Consensus 138 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 138 SQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999998 99999999999999974
No 24
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=8.8e-28 Score=220.89 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=134.5
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+++||+|||++++| |+++|++||+|.+|++++++.+++ ++|||||. |.+.+ +| .+|++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~----------~~g~afV~-f~~~~-------~A-~~A~~ 88 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMK----------HKGFAFVE-YEVPE-------AA-QLALE 88 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-C----------CCSEEEEE-ESSHH-------HH-HHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc----------cCceEEEE-eCCHH-------HH-HHHHH
Confidence 478999999999988 999999999999999999999998 99999999 99998 88 88888
Q ss_pred hcccCC--Cccccccccchhh-------------ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--C
Q 014866 207 KKSFGQ--GKRRMNSRTSLAQ-------------REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--S 269 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r~~~~~-------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~ 269 (417)
.++... |+. +++..+. ......++|||+|||.++|+++|+++|++||.|..|+++.++. .
T Consensus 89 ~l~~~~~~g~~---l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 165 (216)
T 2qfj_A 89 QMNSVMLGGRN---IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK 165 (216)
T ss_dssp HHSSCCCC-CC---CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC
T ss_pred HccCCeeCCee---EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 665433 554 3322211 1234568999999999999999999999999999999999864 4
Q ss_pred CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 270 VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 270 skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
++|||||+|.+.++|.+|+. |||..|+|++|.|.++...
T Consensus 166 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 166 HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 68999999999999999999 9999999999999998654
No 25
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=4.2e-28 Score=214.10 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=135.5
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+++||||||+++++ |+++|++||+|.+|++++++.+++ ++|||||. |.+.+ +| ..|++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~-f~~~~-------~A-~~a~~ 63 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY----------SYGYAFVD-FTSEM-------DS-QRAIK 63 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTE----------ECSEEEEE-ESSHH-------HH-HHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCc----------cceEEEEE-ECCHH-------HH-HHHHH
Confidence 467999999999988 999999999999999999999998 99999999 99998 88 88888
Q ss_pred hcccCC--CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHH
Q 014866 207 KKSFGQ--GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEE 282 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e 282 (417)
.++... |++ +.+....+.......++|||+|||.++++++|+++|++||.|..+.++++.. .++|||||+|.+.+
T Consensus 64 ~l~~~~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 64 VLNGITVRNKR-LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp HHTTCEETTEE-CEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred hcCCCEeCCcE-EEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 665543 554 3233333334445678999999999999999999999999999999999873 46899999999999
Q ss_pred HHHHHHH-hcCcccCC--cceEEccC
Q 014866 283 GARAALN-LAGTMLGF--YPVRVLPS 305 (417)
Q Consensus 283 ~A~~Al~-lng~~i~g--~~l~V~~s 305 (417)
+|.+|+. |||..+.| ++|+|.++
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999 99999987 99999874
No 26
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=6.2e-28 Score=214.22 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=131.8
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCcc--ccCCCCCCCCCCccccccccccCcccccCCccchhHHH
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKT--NNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV 204 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~--~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a 204 (417)
.|++||||||++++| |+++|++||+|.+|++++++.++ + ++|||||. |.+.+ +| +.|
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~----------~~g~afV~-f~~~~-------~A-~~A 63 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQ----------SKGCCFVT-FYTRK-------AA-LEA 63 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCE----------EEEEEEEE-ESSHH-------HH-HHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCC----------cceEEEEE-ECCHH-------HH-HHH
Confidence 478999999999988 99999999999999999999886 7 99999999 99998 88 888
Q ss_pred HhhcccCC--Cccccccccchhh---ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEe
Q 014866 205 RRKKSFGQ--GKRRMNSRTSLAQ---REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEF 278 (417)
Q Consensus 205 ~~~~~~~~--gk~~~~~r~~~~~---~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F 278 (417)
++.++... +.....+.+.... ......++|||+|||.++|+++|+++|++||.|.+|+++.+.. .++|||||+|
T Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 64 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp HHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred HHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 88765432 1111113322222 1223568999999999999999999999999999999999865 4699999999
Q ss_pred cCHHHHHHHHH-hcCcccC---CcceEEccC
Q 014866 279 TDEEGARAALN-LAGTMLG---FYPVRVLPS 305 (417)
Q Consensus 279 ~~~e~A~~Al~-lng~~i~---g~~l~V~~s 305 (417)
.+.++|.+|++ |||..+. |++|.|.++
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99999999998 9998775 499999986
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=5e-28 Score=219.19 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=133.4
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+++||||||++++| |+++|++||+|.+|++++++.++. ++|||||. |.+.+ +| .+|++
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~-f~~~~-------~A-~~A~~ 73 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR----------SRGFGFVT-YATVE-------EV-DAAMN 73 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC----------EEEEEEEE-ESSHH-------HH-HHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCC----------ccceEEEE-eCCHH-------HH-HHHHh
Confidence 478999999999988 999999999999999999999998 99999999 99998 88 88888
Q ss_pred hcccCC-Cccccccccchhh--------ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEE
Q 014866 207 KKSFGQ-GKRRMNSRTSLAQ--------REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAF 275 (417)
Q Consensus 207 ~~~~~~-gk~~~~~r~~~~~--------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aF 275 (417)
..+... |+. +.+..+. ......++|||+|||+++|+++|+++|+.||.|..|.++.+.. .++||||
T Consensus 74 ~~~~~~~g~~---l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~af 150 (196)
T 1l3k_A 74 ARPHKVDGRV---VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150 (196)
T ss_dssp TCSCEETTEE---CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEE
T ss_pred cCCCEECCEE---eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEE
Confidence 754432 554 2222221 1123458999999999999999999999999999999999864 4699999
Q ss_pred EEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 276 IEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 276 V~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
|+|.+.++|.+|+..+|..++|+.|.|.++..
T Consensus 151 V~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp EEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred EEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 99999999999999889999999999999854
No 28
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=9.2e-28 Score=211.28 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=133.2
Q ss_pred CCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHhh
Q 014866 130 RSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK 207 (417)
Q Consensus 130 r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~ 207 (417)
+++||||||++++| |+++|++||+|.++++++++.++. ++|||||. |.+.+ +| ..|++.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~----------~~g~afV~-f~~~~-------~A-~~a~~~ 63 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ----------SLGYGFVN-YIDPK-------DA-EKAINT 63 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCC----------EEEEEEEE-ESSHH-------HH-HHHHHH
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCc----------ceeEEEEE-ECCHH-------HH-HHHHHH
Confidence 67899999999988 999999999999999999998998 99999999 99998 88 888886
Q ss_pred cccCC--CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHH
Q 014866 208 KSFGQ--GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEG 283 (417)
Q Consensus 208 ~~~~~--gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~ 283 (417)
++... |++ +.+....+.......++|||+|||.++++++|+++|++||.|..+++..+.. .++|||||+|.+.++
T Consensus 64 l~~~~~~g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 64 LNGLRLQTKT-IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp HTTCEETTEE-CEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCCCccCCce-EEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 65533 554 2222223333345678999999999999999999999999999999998864 368999999999999
Q ss_pred HHHHHH-hcCcccCCcc--eEEccC
Q 014866 284 ARAALN-LAGTMLGFYP--VRVLPS 305 (417)
Q Consensus 284 A~~Al~-lng~~i~g~~--l~V~~s 305 (417)
|.+|++ |||..+.|+. |.|.++
T Consensus 143 A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCccCCCccceEEEeC
Confidence 999998 9999999964 777764
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=6.2e-26 Score=201.10 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=123.8
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhc----C-------CccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccC
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKL----N-------PMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARN 195 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~----G-------~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~ 195 (417)
.|++||||||++++| |+++|++| | +|.++.+.+ ++|||||+ |.+.+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~----------------~~g~afV~-f~~~~---- 62 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----------------DKNFAFLE-FRSVD---- 62 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET----------------TTTEEEEE-ESSHH----
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC----------------CCCEEEEE-eCCHH----
Confidence 478999999999988 99999999 5 566665543 67999999 99998
Q ss_pred CccchhHHHHhhcccCC--Cccccccccchh--hccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--C
Q 014866 196 GNVNANAAVRRKKSFGQ--GKRRMNSRTSLA--QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--S 269 (417)
Q Consensus 196 ~~~~A~~~a~~~~~~~~--gk~~~~~r~~~~--~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~ 269 (417)
+| ++|+ .++... |++ +++..+ .......++|||+|||.++|+++|+++|++||.|.+|.+..++. .
T Consensus 63 ---~A-~~A~-~~~~~~~~g~~---i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 134 (172)
T 2g4b_A 63 ---ET-TQAM-AFDGIIFQGQS---LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 134 (172)
T ss_dssp ---HH-HHHG-GGTTCEETTEE---CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCS
T ss_pred ---HH-HHHH-HhCCcEecCce---eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 88 8888 444432 555 333333 23334578999999999999999999999999999999999864 4
Q ss_pred CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 270 VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 270 skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
++|||||+|.+.++|.+|++ |||..++|++|.|.++
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 135 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 69999999999999999998 9999999999999986
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=6.3e-26 Score=208.73 Aligned_cols=149 Identities=11% Similarity=0.033 Sum_probs=122.3
Q ss_pred CCCCCCCCC-cChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 130 RSNGGGDFK-RDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 130 r~~~VgnLp-~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
+++|||||| +++++ |+++|++||.|.+|+++++ ++|||||+ |.+.+ +| +.|++
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---------------~~g~afV~-f~~~~-------~A-~~Ai~ 60 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---------------KPGAAMVE-MADGY-------AV-DRAIT 60 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---------------STTCEEEE-ESSHH-------HH-HHHHH
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---------------CCCEEEEE-ECCHH-------HH-HHHHH
Confidence 568999999 78877 9999999999999999875 45999999 99998 88 88998
Q ss_pred hcccCC--Cccccccccchhh---------------------------------------ccCCCCcEEEEcCCCCCCcH
Q 014866 207 KKSFGQ--GKRRMNSRTSLAQ---------------------------------------REEIIRRTVYVSDIDQQVTE 245 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r~~~~~---------------------------------------~~~~~~~~lfV~nLp~~~te 245 (417)
.++... |++ +++..+. +.....++|||+|||+++|+
T Consensus 61 ~lng~~~~g~~---l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~ 137 (205)
T 3tyt_A 61 HLNNNFMFGQK---MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE 137 (205)
T ss_dssp HHTTCEETTEE---CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCH
T ss_pred HhCCCEECCce---EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCH
Confidence 776543 544 2211110 00123568999999999999
Q ss_pred HHHHHHHhcCCCe--eEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCc----ceEEccC
Q 014866 246 EQLAALFVGCGQV--VDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY----PVRVLPS 305 (417)
Q Consensus 246 ~~L~~~F~~~G~I--~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~----~l~V~~s 305 (417)
++|+++|++||.| .+++++.+...++|||||+|.+.++|.+|+. |||..+.|. |+.|+++
T Consensus 138 ~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 138 ENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999 8999998875567999999999999999998 999999876 6666653
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=5e-26 Score=206.30 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=123.2
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEE-----ccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEF-----VPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNAN 201 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~-----v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~ 201 (417)
.|++||||||++++| |+++|++||+|..+. .+.+..+++ ++|||||. |.+.+ +|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~----------~~g~afV~-F~~~~-------~A- 64 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----------DKNFAFLE-FRSVD-------ET- 64 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET----------TTTEEEEE-ESCSH-------HH-
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC----------CCCEEEEE-eCCHH-------HH-
Confidence 478999999999988 999999996443322 111222344 78999999 99998 88
Q ss_pred HHHHhhcccC--CCccccccccchhhc----------------------cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC
Q 014866 202 AAVRRKKSFG--QGKRRMNSRTSLAQR----------------------EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQ 257 (417)
Q Consensus 202 ~~a~~~~~~~--~gk~~~~~r~~~~~~----------------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 257 (417)
++|+ .++.. .|++ +++..+.. .....++|||+|||.++++++|+++|++||.
T Consensus 65 ~~Al-~l~g~~~~g~~---i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 140 (198)
T 2yh0_A 65 TQAM-AFDGIIFQGQS---LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 140 (198)
T ss_dssp HHHG-GGTTEEETTEE---EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC
T ss_pred HHHH-HhcCCEEcCce---EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 8888 44432 2544 22222111 1245689999999999999999999999999
Q ss_pred eeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 258 VVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 258 I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
|.+|++..++. .++|||||+|.+.++|.+|++ |||..++|++|.|.++.+
T Consensus 141 v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 141 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 99999999864 469999999999999999998 999999999999999864
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.92 E-value=5.4e-26 Score=202.44 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=127.4
Q ss_pred CCCCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHH
Q 014866 127 NNQRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV 204 (417)
Q Consensus 127 ~~~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a 204 (417)
...+++||||||++++| |+++|++||.+.. .++.+..++. ++|||||. |.+.+ +| .+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~----------~~g~afV~-f~~~~-------~a-~~A 70 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGT----------NRKFGYVD-FESAE-------DL-EKA 70 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEET----------TTTEEEEE-ESSHH-------HH-HHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCc----------cccEEEEE-ECCHH-------HH-HHH
Confidence 34578999999999987 9999999999988 5677778888 99999999 99998 88 888
Q ss_pred HhhcccCC-Cccccccccchhh----ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEec
Q 014866 205 RRKKSFGQ-GKRRMNSRTSLAQ----REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFT 279 (417)
Q Consensus 205 ~~~~~~~~-gk~~~~~r~~~~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~ 279 (417)
++..+... |++ +++..+. ......++|||+|||.++|+++|+++|++||.|..+ .....++|||||+|.
T Consensus 71 ~~l~g~~~~g~~---l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~ 144 (175)
T 1fje_B 71 LELTGLKVFGNE---IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFK 144 (175)
T ss_dssp HHGGGEEETTEE---EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECS
T ss_pred HhcCCCEeCCeE---EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEEC
Confidence 86333322 665 3333332 223356899999999999999999999999988776 434457899999999
Q ss_pred CHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 280 DEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 280 ~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
+.++|.+|+. |||..+.|++|.|.++.
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 145 SEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 9999999999 99999999999999975
No 33
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=7.7e-25 Score=210.12 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=125.7
Q ss_pred CCCCCCCCCCcChHH--HH----HHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhH
Q 014866 129 QRSNGGGDFKRDMRE--LQ----ELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANA 202 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~----e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~ 202 (417)
.+++||||||++++| |+ ++|++||+|.+|++++ +++ ++|||||+ |.+.+ +| .
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~----------~~g~afV~-f~~~~-------~a-~ 66 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLK----------MRGQAFVI-FKEVS-------SA-T 66 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCC----------cceEEEEE-ECCHH-------HH-H
Confidence 578999999999977 77 8999999999999887 566 88999999 99998 88 8
Q ss_pred HHHhhcccCC--Cccccccccchhh-------------------------------------------------------
Q 014866 203 AVRRKKSFGQ--GKRRMNSRTSLAQ------------------------------------------------------- 225 (417)
Q Consensus 203 ~a~~~~~~~~--gk~~~~~r~~~~~------------------------------------------------------- 225 (417)
+|++.++... |+. +++.++.
T Consensus 67 ~A~~~l~g~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (282)
T 3pgw_A 67 NALRSMQGFPFYDKP---MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPG 143 (282)
T ss_pred HHHHHhcCCeeCCcE---EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCC
Confidence 8887665432 443 2211110
Q ss_pred ----------------------------------------------------------ccCCCCcEEEEcCCCCCCcHHH
Q 014866 226 ----------------------------------------------------------REEIIRRTVYVSDIDQQVTEEQ 247 (417)
Q Consensus 226 ----------------------------------------------------------~~~~~~~~lfV~nLp~~~te~~ 247 (417)
......++|||+|||.++++++
T Consensus 144 ~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 223 (282)
T 3pgw_A 144 MPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELM 223 (282)
T ss_pred CCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHH
Confidence 0112457899999999999999
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccC-CcceEEccCC
Q 014866 248 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPSK 306 (417)
Q Consensus 248 L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~-g~~l~V~~s~ 306 (417)
|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++ |||..+. |++|+|.+++
T Consensus 224 l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 224 LSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999765 4899999999999999999 9999999 9999999975
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=2.6e-24 Score=200.89 Aligned_cols=150 Identities=22% Similarity=0.147 Sum_probs=124.5
Q ss_pred CCCCCCCCCCCc-ChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHH
Q 014866 128 NQRSNGGGDFKR-DMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAV 204 (417)
Q Consensus 128 ~~r~~~VgnLp~-~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a 204 (417)
..+++||||||+ +++| |+++|++||+|.+|++++++ +|||||+ |.+.+ +| ++|
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---------------~g~afV~-F~~~~-------~A-~~A 88 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---------------KENALVQ-MADGN-------QA-QLA 88 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---------------SCCEEEE-ESCHH-------HH-HHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---------------CCEEEEE-ECCHH-------HH-HHH
Confidence 347899999999 8877 99999999999999999874 3899999 99998 88 888
Q ss_pred HhhcccCC--Cccccccccchhhc-------------------------------------cCCCCcEEEEcCCCCCCcH
Q 014866 205 RRKKSFGQ--GKRRMNSRTSLAQR-------------------------------------EEIIRRTVYVSDIDQQVTE 245 (417)
Q Consensus 205 ~~~~~~~~--gk~~~~~r~~~~~~-------------------------------------~~~~~~~lfV~nLp~~~te 245 (417)
++.++... |+. +++..+.. .....++|||+|||.++++
T Consensus 89 i~~l~g~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~ 165 (229)
T 2adc_A 89 MSHLNGHKLHGKP---IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 165 (229)
T ss_dssp HHHHTTCBCSSSB---CEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCH
T ss_pred HHHhCCCeECCeE---EEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCH
Confidence 87655432 444 22211110 0123588999999999999
Q ss_pred HHHHHHHhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccC-CcceEEccCCC
Q 014866 246 EQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPSKT 307 (417)
Q Consensus 246 ~~L~~~F~~~G-~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~-g~~l~V~~s~~ 307 (417)
++|+++|++|| .|.+|+++.+ ++|||||+|.+.++|.+|+. |||..+. |++|+|.+++.
T Consensus 166 ~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 166 EDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999999999 9999999764 35899999999999999999 9999999 99999999864
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=2.1e-24 Score=196.30 Aligned_cols=149 Identities=22% Similarity=0.152 Sum_probs=124.1
Q ss_pred CCCCCCCCCCc-ChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHH
Q 014866 129 QRSNGGGDFKR-DMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVR 205 (417)
Q Consensus 129 ~r~~~VgnLp~-~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~ 205 (417)
.+++||||||+ ++++ |+++|++||+|.+|++++++ +|||||. |.+.+ +| +.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---------------~g~afV~-f~~~~-------~a-~~A~ 58 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---------------KENALVQ-MADGN-------QA-QLAM 58 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---------------SSCCEEE-CTTTH-------HH-HHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---------------CCEEEEE-ECCHH-------HH-HHHH
Confidence 36789999999 8877 99999999999999999874 3899999 99998 88 8888
Q ss_pred hhcccCC--Cccccccccchhhc-------------------------------------cCCCCcEEEEcCCCCCCcHH
Q 014866 206 RKKSFGQ--GKRRMNSRTSLAQR-------------------------------------EEIIRRTVYVSDIDQQVTEE 246 (417)
Q Consensus 206 ~~~~~~~--gk~~~~~r~~~~~~-------------------------------------~~~~~~~lfV~nLp~~~te~ 246 (417)
+.++... |+. +++..+.. .....++|||+|||..++++
T Consensus 59 ~~l~~~~~~g~~---l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 135 (198)
T 1qm9_A 59 SHLNGHKLHGKP---IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEE 135 (198)
T ss_dssp HHHTTCCCSSCC---CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHH
T ss_pred HHhCCCeecCeE---EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHH
Confidence 8665432 444 22221110 01236789999999999999
Q ss_pred HHHHHHhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccC-CcceEEccCCC
Q 014866 247 QLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPSKT 307 (417)
Q Consensus 247 ~L~~~F~~~G-~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~-g~~l~V~~s~~ 307 (417)
+|+++|++|| .|.+|+++.+. +|||||+|.+.++|.+|+. |||..++ |++|.|.+++.
T Consensus 136 ~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 136 DLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred HHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 9999999999 99999997653 5899999999999999999 9999999 99999999754
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=1e-23 Score=200.69 Aligned_cols=147 Identities=22% Similarity=0.242 Sum_probs=124.9
Q ss_pred CCCCCCCCCCcChHH--HHHHHhhcCCccEEEccCCCCccccCCCCCCCCCCccccccccccCcccccCCccchhHHHHh
Q 014866 129 QRSNGGGDFKRDMRE--LQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRR 206 (417)
Q Consensus 129 ~r~~~VgnLp~~~~e--L~e~F~~~G~I~~v~v~~d~~~~~v~~~~~~~~~s~gyafV~~F~~~~~~~~~~~~A~~~a~~ 206 (417)
.+++||||||++++| |+++|++||+|.+|++.+ ++|||||. |.+.+ +| ..|+.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----------------~kg~afV~-f~~~~-------~A-~~A~~ 76 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR----------------DRGFGFIR-LESRT-------LA-EIAKA 76 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET----------------TTTEEEEE-CSSHH-------HH-HHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC----------------CCcEEEEE-ECCHH-------HH-HHHHH
Confidence 367999999999988 999999999999999865 66999999 99998 88 88888
Q ss_pred hcccCC--CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHH
Q 014866 207 KKSFGQ--GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEG 283 (417)
Q Consensus 207 ~~~~~~--gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~ 283 (417)
.++... |+. +++..+ ....+|||+|||..+|+++|+++|+.||.|.+|.++.+.. .++|||||+|.+.++
T Consensus 77 ~l~g~~i~g~~---l~v~~a----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 77 ELDGTILKSRP---LRIRFA----THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp HHTTCEETTEE---CEEEEC----CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred HcCCcEECCce---eEeeec----ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 665532 555 444433 2467999999999999999999999999999999999854 369999999999999
Q ss_pred HHHHHH-h-cCcccC---CcceEEccCCC
Q 014866 284 ARAALN-L-AGTMLG---FYPVRVLPSKT 307 (417)
Q Consensus 284 A~~Al~-l-ng~~i~---g~~l~V~~s~~ 307 (417)
|.+|+. | ++..+. |++|.|.++..
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 999998 8 455554 99999999854
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=2.3e-22 Score=176.71 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=111.3
Q ss_pred EEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCC
Q 014866 260 DCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 338 (417)
Q Consensus 260 ~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 338 (417)
+++++.+..+++|||||+|.+.++|++|+. +++....+..+.+............ ..............+|||+|||.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-SHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-CCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-ccccccccCCCCCCEEEEeCCCC
Confidence 567888877889999999999999999997 7664432222222221100000000 00001111123468999999999
Q ss_pred CCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCC
Q 014866 339 KVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRP 409 (417)
Q Consensus 339 ~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~ 409 (417)
.+++++|+++|++| |.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..++|++|+|.|+++...+
T Consensus 81 ~~~~~~l~~~F~~~-G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 81 RTSPDTLRRVFEKY-GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TCCHHHHHHHHHHH-SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCHHHHHHHHHhc-CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999995 999999999985 7899999999999999999998 9999999999999999876443
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=1.4e-21 Score=162.92 Aligned_cols=109 Identities=20% Similarity=0.351 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
...+|||+|||+++|+++|+++|++||.|.+|+|+.+..+++|||||+|.+.++|.+|++ |+|..+.|++|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 457899999999999999999999999999999999988889999999999999999998 9999999999999998643
Q ss_pred CCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHH
Q 014866 309 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 344 (417)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~d 344 (417)
.... ...........+|||+|||+++|++-
T Consensus 84 ~~~~------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KERE------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------
T ss_pred cccc------cccccccCCCCceEeCCCCCCccccc
Confidence 2111 11111223346899999999998863
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=1e-20 Score=164.97 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=113.3
Q ss_pred EEecCCCCCceEEEEEecCHHHHHHHHH-h-cCcccCCcceEEccCCCCCCCCCC--CCCCCCchhhccccceEEEeCCC
Q 014866 262 RICGDPNSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPSKTAIAPVNP--TFLPRTEDEREMCARTIYCTNID 337 (417)
Q Consensus 262 ~i~~d~~~skG~aFV~F~~~e~A~~Al~-l-ng~~i~g~~l~V~~s~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nLp 337 (417)
.+..+...-+|+++|+|.+.++|++|++ + ||..+.| ++.+.++......... ..............++|||+|||
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 4444444568999999999999999998 8 9999999 9999987542110000 00011112223456899999999
Q ss_pred CCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 338 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 338 ~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
..+++++|+++|++| |.|.+|+++++ ++|||||+|.+.++|.+|+. |||..++|++|+|.|++++.
T Consensus 83 ~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 83 NNGNKTELERAFGYY-GPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCCSCHHHHHHHHHH-SCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCHHHHHHHHHhh-CCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999995 99999999887 58899999999999999999 99999999999999998764
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=144.26 Aligned_cols=78 Identities=31% Similarity=0.459 Sum_probs=73.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
+++|||+|||.++|+++|+++|++ ||.|.+|++++|. |.++|||||+|.+.++|.+|++ |||..++|++|+|+||+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 478999999999999999999999 5999999999986 7899999999999999999998 99999999999999998
Q ss_pred CC
Q 014866 405 TP 406 (417)
Q Consensus 405 ~~ 406 (417)
|.
T Consensus 98 PS 99 (99)
T 4fxv_A 98 PS 99 (99)
T ss_dssp BC
T ss_pred CC
Confidence 63
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=1.3e-19 Score=159.10 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=96.0
Q ss_pred CccccccccccCcccccCCccchhHHHHhhcccC---CCccccccc-----------cchhhccCCCCcEEEEcCCCCCC
Q 014866 178 GGFFANNSLIFNNHNARNGNVNANAAVRRKKSFG---QGKRRMNSR-----------TSLAQREEIIRRTVYVSDIDQQV 243 (417)
Q Consensus 178 s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~~~~---~gk~~~~~r-----------~~~~~~~~~~~~~lfV~nLp~~~ 243 (417)
++|||||+ |.+.+ +| ++|++.++.. .|....... ...........++|||+|||+++
T Consensus 12 ~~G~~fV~-f~~~~-------~A-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 12 LKGETTTE-AVDAA-------TA-EKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp CEEEEEEE-CSSHH-------HH-HHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred ccchhHHH-HHHHH-------hH-HHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 78999999 99998 78 8887665421 111100000 00111223456899999999999
Q ss_pred cHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 244 TEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 244 te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
|+++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.+++..
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999864 479999999999999999998 9999999999999998654
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=4.9e-18 Score=141.39 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=74.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
..+|||+|||+.+++++|+++|++ ||.|.+|+|+++.+.++|||||+|.+.++|.+|++ |||..|+|+.|+|.++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 478999999999999999999999 59999999999988889999999999999999998 9999999999999999875
Q ss_pred C
Q 014866 407 V 407 (417)
Q Consensus 407 ~ 407 (417)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=138.23 Aligned_cols=78 Identities=23% Similarity=0.411 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....+|||+|||+++|+++|+++|++||.|.+|++++|+. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3567899999999999999999999999999999999875 369999999999999999998 9999999999999998
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 5
No 44
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=136.85 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=73.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-h-CCceeCCeeeEEee
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRVSP 402 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-l-ng~~l~G~~l~V~~ 402 (417)
+++|||+|||+++|+++|+++|++| | .|.+|+|++|+ +.++|||||+|.+.++|.+|++ + ++..++|++|+|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~-G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH-GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH-TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh-CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 3689999999999999999999995 9 89999999986 7899999999999999999998 6 56789999999999
Q ss_pred cCCCCCC
Q 014866 403 SKTPVRP 409 (417)
Q Consensus 403 a~~~~~~ 409 (417)
|++....
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 45
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=5e-18 Score=145.57 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=79.0
Q ss_pred EEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhh
Q 014866 273 FAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 351 (417)
Q Consensus 273 ~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~ 351 (417)
+.|++|.+...+..|+. ++|....|+.- ..+.. + .......++|||+|||..+++++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 70 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------P---PPDVEGMTSLKVDNLTYRTSPDTLRRVFEK 70 (135)
T ss_dssp ------------------------------CCSCC-----------S---CSSGGGCCCEEEECCCSSCHHHHHHHHHGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------C---CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 67888888889999998 88876655431 11111 0 111234589999999999999999999999
Q ss_pred cCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCCC
Q 014866 352 VCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRA 411 (417)
Q Consensus 352 f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~~~ 411 (417)
||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|++|+|.|+++...+..
T Consensus 71 -~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 71 -YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 132 (135)
T ss_dssp -GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTT
T ss_pred -cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCcc
Confidence 5999999999875 6899999999999999999998 999999999999999998755543
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=136.41 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=74.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||+.+++++|+++|++ ||.|.+|.|++|. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4589999999999999999999999 5999999999986 6899999999999999999999 9999999999999999
Q ss_pred CCC
Q 014866 404 KTP 406 (417)
Q Consensus 404 ~~~ 406 (417)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6e-17 Score=131.72 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=78.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
...++|||+|||..+++++|+++|++| |.|.+|.|.++.+.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH-SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc-CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 346899999999999999999999995 9999999999987789999999999999999999 99999999999999999
Q ss_pred CCCCCCC
Q 014866 405 TPVRPRA 411 (417)
Q Consensus 405 ~~~~~~~ 411 (417)
++...+.
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqi_A 92 TPSSQKS 98 (103)
T ss_dssp CTTCCCC
T ss_pred CCccccc
Confidence 8765443
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-17 Score=131.49 Aligned_cols=87 Identities=21% Similarity=0.330 Sum_probs=79.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4589999999999999999999999 5999999999986 6889999999999999999997 9999999999999999
Q ss_pred CCCCCCCCCCC
Q 014866 404 KTPVRPRAPRL 414 (417)
Q Consensus 404 ~~~~~~~~~r~ 414 (417)
++...+....+
T Consensus 86 ~~~~~~~~~~~ 96 (99)
T 1whw_A 86 TIKKEASQSGP 96 (99)
T ss_dssp CCCSTTCCCCC
T ss_pred CCCcccccCCC
Confidence 98866554433
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=128.49 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=72.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ ||.|.++.+..+. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3589999999999999999999999 5999999999985 7889999999999999999999 9999999999999999
Q ss_pred CCC
Q 014866 404 KTP 406 (417)
Q Consensus 404 ~~~ 406 (417)
++.
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=5.4e-17 Score=126.41 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=73.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
.+|||+|||..+++++|+++|++ ||.|.++.++++. +.++|||||+|.+.++|.+|++ |||..++|++|+|.|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 68999999999999999999999 5999999999885 7889999999999999999999 999999999999999987
Q ss_pred CC
Q 014866 406 PV 407 (417)
Q Consensus 406 ~~ 407 (417)
..
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=135.68 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=72.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCc--eEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCc----eeCCee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGV----VLGSLP 397 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~--I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~----~l~G~~ 397 (417)
...+|||+|||+.+|+++|+++|++ ||. |.+|++++|+ +.++|||||+|.+.++|.+|++ |||. .++||+
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4589999999999999999999999 595 6799999986 7899999999999999999999 9986 599999
Q ss_pred eEEeecCCC
Q 014866 398 IRVSPSKTP 406 (417)
Q Consensus 398 l~V~~a~~~ 406 (417)
|.|+||+.+
T Consensus 87 i~V~~Akss 95 (95)
T 2lkz_A 87 IGVDFAKSA 95 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999999863
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9e-17 Score=130.66 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=77.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|..+.+.++|||||+|.+.++|.+|++ |||..|+|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34689999999999999999999999 59999999999986789999999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 014866 405 TPVRPR 410 (417)
Q Consensus 405 ~~~~~~ 410 (417)
+...+.
T Consensus 92 ~~~~~~ 97 (103)
T 2cq3_A 92 ARVMTN 97 (103)
T ss_dssp SSCCCC
T ss_pred cCCCCC
Confidence 876544
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=1e-16 Score=132.95 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=77.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999999 5999999999985 7889999999999999999998 999999999999999
Q ss_pred cCCCCCCCC
Q 014866 403 SKTPVRPRA 411 (417)
Q Consensus 403 a~~~~~~~~ 411 (417)
+++...+..
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 987765443
No 54
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=6.1e-17 Score=132.07 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=77.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCC---eeeEE
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGS---LPIRV 400 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G---~~l~V 400 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|.++. +.++|||||+|.+.++|.+|++ |||..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 45689999999999999999999999 5999999999986 7889999999999999999999 99999998 99999
Q ss_pred eecCCCCCCC
Q 014866 401 SPSKTPVRPR 410 (417)
Q Consensus 401 ~~a~~~~~~~ 410 (417)
.|+++...++
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=131.75 Aligned_cols=84 Identities=26% Similarity=0.334 Sum_probs=77.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34689999999999999999999999 5999999999985 6899999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++...+.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 98876544
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=128.94 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=77.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ ||.|..|.+.++. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4589999999999999999999999 5999999999985 6889999999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 014866 404 KTPVRPRA 411 (417)
Q Consensus 404 ~~~~~~~~ 411 (417)
++......
T Consensus 83 ~~~~~~~~ 90 (95)
T 2dnz_A 83 TERLDGGS 90 (95)
T ss_dssp SCCCCCCC
T ss_pred ccccCCCC
Confidence 88766554
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-17 Score=130.11 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=76.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCC-----CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 400 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~-----~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V 400 (417)
+.++|||+|||..+++++|+++|++ ||.|..|.+..+.. .++|||||+|.+.++|.+|++ |||..+.|+.|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3589999999999999999999999 59999999998753 789999999999999999999 9999999999999
Q ss_pred eecCCCCCCCC
Q 014866 401 SPSKTPVRPRA 411 (417)
Q Consensus 401 ~~a~~~~~~~~ 411 (417)
.|+++...+..
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998765543
No 58
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=134.28 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=81.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 310 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~ 310 (417)
++|||+|||+++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999988 67999999999999999998 999999999999999865432
Q ss_pred CCCCCCCCCCchhhccccceEEEeCCC
Q 014866 311 PVNPTFLPRTEDEREMCARTIYCTNID 337 (417)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~V~nLp 337 (417)
..... ..........+|||+||+
T Consensus 78 ~~~~~----~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRFD----RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCC----SCCCSCCCCSCCCSCCCC
T ss_pred cccCC----CCCccccCCCceecCCCC
Confidence 21111 111112335789999997
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.5e-17 Score=131.51 Aligned_cols=85 Identities=18% Similarity=0.328 Sum_probs=78.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
...++|||+|||..+++++|+++|++ ||.|..|.+..+.+.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 35689999999999999999999999 59999999999877889999999999999999999 99999999999999999
Q ss_pred CCCCCCC
Q 014866 405 TPVRPRA 411 (417)
Q Consensus 405 ~~~~~~~ 411 (417)
+...+..
T Consensus 92 ~~~~~~~ 98 (103)
T 2d9p_A 92 RKEERQS 98 (103)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8765443
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=8.7e-18 Score=133.50 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=68.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G--~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
.+|||+|||..+++++|+++|++ || .|.+++++.+. |.++|||||+|.+.++|.+|++ |||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 57999999999999999999999 59 99999999985 7899999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 014866 404 KTPVRPR 410 (417)
Q Consensus 404 ~~~~~~~ 410 (417)
.++..+.
T Consensus 81 ~~~~~~~ 87 (90)
T 3p5t_L 81 NKLEHHH 87 (90)
T ss_dssp -------
T ss_pred CCCcccc
Confidence 9876554
No 61
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.9e-17 Score=130.33 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=77.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEE-EEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v-~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
+.++|||+|||..+++++|+++|++ ||.|..+ .|+++. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4589999999999999999999999 5999999 999874 7889999999999999999999 999999999999999
Q ss_pred cCCCCCCCC
Q 014866 403 SKTPVRPRA 411 (417)
Q Consensus 403 a~~~~~~~~ 411 (417)
+++...+..
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 988765443
No 62
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=8.9e-17 Score=133.44 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=77.4
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999999999999999999 5999999999986 6889999999999999999998 999999999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++.....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98875544
No 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=129.53 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=76.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|++||+..+.|+.|+|.|++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4589999999999999999999999 5999999999985 678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 014866 405 TPVRPR 410 (417)
Q Consensus 405 ~~~~~~ 410 (417)
+.....
T Consensus 88 ~~~~~~ 93 (99)
T 2dgs_A 88 PRDSKS 93 (99)
T ss_dssp CCCCCC
T ss_pred CCcccC
Confidence 875544
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.2e-17 Score=129.90 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=76.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34589999999999999999999999 5999999999987 7889999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 014866 404 KTPVR 408 (417)
Q Consensus 404 ~~~~~ 408 (417)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=5.2e-17 Score=127.11 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=72.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ ||.|.++.++++. +.++|||||+|.+.++|.+|++ |||..++|++|+|.||
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4589999999999999999999999 5999999998875 6789999999999999999998 9999999999999998
Q ss_pred C
Q 014866 404 K 404 (417)
Q Consensus 404 ~ 404 (417)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=5.4e-17 Score=129.02 Aligned_cols=83 Identities=24% Similarity=0.256 Sum_probs=77.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
+.++|||+|||..+++++|+++|++ ||.|..|.+.++.+.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4589999999999999999999999 59999999999878899999999999999999999 999999999999999988
Q ss_pred CCCCC
Q 014866 406 PVRPR 410 (417)
Q Consensus 406 ~~~~~ 410 (417)
...+.
T Consensus 86 ~~~~~ 90 (92)
T 2dgv_A 86 ASGPS 90 (92)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 67
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=131.82 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=77.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 4589999999999999999999999 5999999999885 6889999999999999999998 9999999999999999
Q ss_pred CCCCCCCC
Q 014866 404 KTPVRPRA 411 (417)
Q Consensus 404 ~~~~~~~~ 411 (417)
++...+..
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98765543
No 68
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=4.8e-17 Score=144.01 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=75.7
Q ss_pred EEecCHHHHHHHHH-hcCcccC--CcceEEccCCCCCCCC-CCCC--C---CCCchhhccccceEEEeCCCCCCCHHHHH
Q 014866 276 IEFTDEEGARAALN-LAGTMLG--FYPVRVLPSKTAIAPV-NPTF--L---PRTEDEREMCARTIYCTNIDKKVTQADVK 346 (417)
Q Consensus 276 V~F~~~e~A~~Al~-lng~~i~--g~~l~V~~s~~~~~~~-~~~~--~---~~~~~~~~~~~~~l~V~nLp~~~te~dL~ 346 (417)
.+|.+.++|..|+. +++.... |+.+...++....... .+.. . ...........++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67899999999997 8876654 6665555432111000 0000 0 00001112346899999999999999999
Q ss_pred HHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 014866 347 LFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR 410 (417)
Q Consensus 347 ~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~~ 410 (417)
++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. |||..|.|+.|.|.|+.+...++
T Consensus 91 ~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999 5999999999885 6889999999999999999999 99999999999999998765443
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=8.6e-17 Score=129.14 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=75.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
+++|||+|||..+++++|+++|++ ||.|.+|.+..+. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 589999999999999999999999 5999999999885 6889999999999999999998 99999999999999998
Q ss_pred CCCCC
Q 014866 405 TPVRP 409 (417)
Q Consensus 405 ~~~~~ 409 (417)
+....
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87543
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=128.94 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=75.0
Q ss_pred cceEEEeCCCCCCCHHHHH----HHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 328 ARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~----~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.++|||+|||..+++++|+ ++|++| |.|.+|.|+.+... +|||||+|.+.++|.+|++ |||..++|++|+|.|
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4799999999999999999 999995 99999999998755 8999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++...+.
T Consensus 87 a~~~~~~~ 94 (96)
T 2dgx_A 87 ATGASGPS 94 (96)
T ss_dssp CCCSSCCC
T ss_pred cCCCCCCC
Confidence 98776543
No 71
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=1.7e-17 Score=144.53 Aligned_cols=115 Identities=22% Similarity=0.196 Sum_probs=93.8
Q ss_pred CCccccccccccCcccccCCccchhHHHHhhc-ccCC--Cccccccccchh------------------hccCCCCcEEE
Q 014866 177 NGGFFANNSLIFNNHNARNGNVNANAAVRRKK-SFGQ--GKRRMNSRTSLA------------------QREEIIRRTVY 235 (417)
Q Consensus 177 ~s~gyafV~~F~~~~~~~~~~~~A~~~a~~~~-~~~~--gk~~~~~r~~~~------------------~~~~~~~~~lf 235 (417)
..+|+++|+ |.+.+ +| ++|++.+ +... | . +++..+ .......++||
T Consensus 11 ~l~G~~~ve-~~~~~-------~A-~~a~~~~~ng~~~~G-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (150)
T 2i2y_A 11 TLKGETTTE-AVDAA-------TA-EKVFKQYANDNGVDG-E---WTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVY 77 (150)
T ss_dssp SSCEEEEEE-CSSHH-------HH-TTTHHHHHHHHTCCC-E---EEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEE
T ss_pred cccccceee-ecCHH-------HH-HHHHHHHhcCCCCCC-c---eecccccCccccccccccccccccccCCCCCCEEE
Confidence 367999999 99998 77 7777665 3321 3 2 221111 12234578999
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 236 VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 236 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
|+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+. |||..+.|++|.|.+++.
T Consensus 78 V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp EESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 9999999999999999999999999999987 56999999999999999998 999999999999999853
No 72
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=133.58 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+++++++|+++|++||.|.+|+|+.|+. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999999876 369999999999999999998 9999999999999997
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 73
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=127.51 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=74.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.+.++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34689999999999999999999999 5999999999886 6889999999999999999999 999999999999999
Q ss_pred cCC
Q 014866 403 SKT 405 (417)
Q Consensus 403 a~~ 405 (417)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 975
No 74
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=3e-17 Score=136.22 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=90.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
+...++|||+|||+++|+++|+++|+.||.|.+|.++.+.. ++|||||+|.+.++|.+|+. |||..+.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999997653 48999999999999999999 99999999999999974
Q ss_pred CCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHHhhcCC
Q 014866 307 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG 354 (417)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G 354 (417)
... . . ++++...++++|.++|+++ |
T Consensus 84 ~~~--------------~----~----~~~~~~~~~~~l~~~~~~~-g 108 (115)
T 3lqv_A 84 ANR--------------A----F----QKMDTKKKEEQLKLLKEKY-G 108 (115)
T ss_dssp HHH--------------H----T----TTSCHHHHHHHHHHHHHHH-C
T ss_pred CCh--------------h----h----hhhhHhHhHHHHHHHHHHh-C
Confidence 210 0 0 5677888999999999994 7
No 75
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-16 Score=131.10 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=78.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
....++|||+|||..+++++|+++|++ ||.|..|+|+++. +.++|||||+|.+.++|.+|++ |++ .|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345689999999999999999999999 5999999999985 7899999999999999999999 898 8999999999
Q ss_pred ecCCCCCCCCCCC
Q 014866 402 PSKTPVRPRAPRL 414 (417)
Q Consensus 402 ~a~~~~~~~~~r~ 414 (417)
|+++...++..+.
T Consensus 92 ~a~~~~~~~~~~~ 104 (116)
T 2cqd_A 92 LAYLGAKPRSLQT 104 (116)
T ss_dssp ESTTTCCCCCCCC
T ss_pred EcccCCCccccCC
Confidence 9988766665443
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.5e-17 Score=131.15 Aligned_cols=80 Identities=25% Similarity=0.255 Sum_probs=71.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-ln--g~~l~G~~l~V~~ 402 (417)
.+.++|||+|||+.+++++|+++|++| |.|.+|+|+++ +|||||+|.+.++|.+|++ |+ +..|.|++|+|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f-G~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH-CCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 346899999999999999999999995 99999999976 6799999999999999998 76 4899999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++.....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98765443
No 77
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.2e-17 Score=130.58 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=77.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++| |.|..|.++++. +.++|||||+|.+.++|.+|++ |||..|.|++|+|.|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKY-GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH-SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45899999999999999999999995 999999999975 6789999999999999999998 9999999999999999
Q ss_pred CCCCCCCCC
Q 014866 404 KTPVRPRAP 412 (417)
Q Consensus 404 ~~~~~~~~~ 412 (417)
++....+..
T Consensus 90 ~~~~~~~~~ 98 (102)
T 1x5s_A 90 GKSSDNRSG 98 (102)
T ss_dssp ECCCCCCCC
T ss_pred CCCCCCCCC
Confidence 887665543
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=129.62 Aligned_cols=82 Identities=28% Similarity=0.410 Sum_probs=76.6
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
.....++|||+|||+++++++|+++|++||.|.+|+++.++.+++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345678999999999999999999999999999999999987789999999999999999998 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 653
No 79
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=129.76 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=77.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEecc---CCCCceEEEEEeCCHHHHHHHHH-h-CCceeCCeeeEE
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---YHHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRV 400 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d---~~~~kG~aFV~F~~~e~A~~Al~-l-ng~~l~G~~l~V 400 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+++ .+.++|||||+|.+.++|.+|++ | ||..|.|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 34689999999999999999999999 599999999988 37889999999999999999999 9 999999999999
Q ss_pred eecCCCCCCC
Q 014866 401 SPSKTPVRPR 410 (417)
Q Consensus 401 ~~a~~~~~~~ 410 (417)
.|+++.....
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998875543
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=130.38 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=77.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hC------CceeCCee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CS------GVVLGSLP 397 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-ln------g~~l~G~~ 397 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ || |..++|+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 4689999999999999999999999 5999999999886 6889999999999999999999 99 99999999
Q ss_pred eEEeecCCCCCCCC
Q 014866 398 IRVSPSKTPVRPRA 411 (417)
Q Consensus 398 l~V~~a~~~~~~~~ 411 (417)
|+|.|+.+......
T Consensus 93 l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 93 LKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEEECCCCccCCC
Confidence 99999988755443
No 81
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=133.01 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=76.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3589999999999999999999999 5999999999987 7889999999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 014866 405 TPVRPR 410 (417)
Q Consensus 405 ~~~~~~ 410 (417)
++..+.
T Consensus 85 ~~~~~~ 90 (116)
T 2fy1_A 85 KPSFQS 90 (116)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 776443
No 82
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=126.95 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=73.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34589999999999999999999999 5999999999886 6789999999999999999998 999999999999999
Q ss_pred cC
Q 014866 403 SK 404 (417)
Q Consensus 403 a~ 404 (417)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 83
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=126.89 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=73.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4589999999999999999999999 5999999999987 7889999999999999999999 99999999999999987
Q ss_pred C
Q 014866 405 T 405 (417)
Q Consensus 405 ~ 405 (417)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-16 Score=129.59 Aligned_cols=80 Identities=28% Similarity=0.372 Sum_probs=74.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|..+. +.++|||||+|.+.++|.+|++ |||..|.|+.|.|.|++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 4589999999999999999999999 5999999999886 7789999999999999999999 99999999999999997
Q ss_pred CCC
Q 014866 405 TPV 407 (417)
Q Consensus 405 ~~~ 407 (417)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 553
No 85
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=129.70 Aligned_cols=84 Identities=25% Similarity=0.299 Sum_probs=77.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34589999999999999999999999 5999999999985 6899999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++.....
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 98876544
No 86
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=132.76 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=76.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
....++|||+|||..+++++|+++|++ ||.|.+|.+..+.+.++|||||+|.+.++|.+|++ |||..++|+.|+|.|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 445689999999999999999999999 59999999999987789999999999999999999 9999999999999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
++..
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8753
No 87
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=130.93 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCC-CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-h-cCcccCCcceEEccC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPS 305 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-l-ng~~i~g~~l~V~~s 305 (417)
+++|||+|||+++|+++|+++|++|| .|.+|++++|+. .++|||||+|.+.++|.+|++ + ++..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 899999999875 479999999999999999998 6 456799999999998
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.9e-17 Score=130.99 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=73.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||.++|+++|+++|++ ||.|.+|.|+++. +.++|||||+|.+.++|.+|+.++|..++|+.|.|.|+..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 3589999999999999999999999 5999999999987 7899999999999999999999999999999999999754
No 89
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=130.25 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=74.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ |||..++|+.|.|.|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4589999999999999999999999 5999999999886 6889999999999999999999 9999999999999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
++..
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8754
No 90
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=127.76 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=76.6
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
.....++|||+|||+++++++|+++|++||.|.+|+++.+...++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345678999999999999999999999999999999999887789999999999999999998 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 91
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=129.90 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=76.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|..+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4589999999999999999999999 5999999999876 6889999999999999999999 9999999999999999
Q ss_pred CCCCCC
Q 014866 404 KTPVRP 409 (417)
Q Consensus 404 ~~~~~~ 409 (417)
++....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 876443
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.7e-16 Score=130.56 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=75.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|+. |||..++|+.|+|.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34589999999999999999999999 5999999999875 6889999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 014866 403 SKTPVR 408 (417)
Q Consensus 403 a~~~~~ 408 (417)
+++...
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987644
No 93
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=2.7e-16 Score=124.07 Aligned_cols=78 Identities=32% Similarity=0.537 Sum_probs=73.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
.++|||+|||..+++++|+++|++ ||.|.++.++.+. +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 489999999999999999999999 5999999999885 7889999999999999999999999999999999999987
Q ss_pred C
Q 014866 406 P 406 (417)
Q Consensus 406 ~ 406 (417)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 94
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=5.1e-17 Score=129.01 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999999865 469999999999999999998 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.9e-16 Score=126.95 Aligned_cols=82 Identities=24% Similarity=0.386 Sum_probs=75.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~ 404 (417)
+.++|||+|||..+++++|+++|++| | |..|.|+++. +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.|++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 45899999999999999999999995 8 9999999986 688999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 014866 405 TPVRPR 410 (417)
Q Consensus 405 ~~~~~~ 410 (417)
+.....
T Consensus 92 ~~~~~~ 97 (103)
T 2dng_A 92 GRKQDK 97 (103)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875544
No 96
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=129.96 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=75.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.+.++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34689999999999999999999999 5999999999885 6889999999999999999998 999999999999999
Q ss_pred cCCCC
Q 014866 403 SKTPV 407 (417)
Q Consensus 403 a~~~~ 407 (417)
+++..
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98753
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=2.7e-16 Score=123.73 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=71.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.++|.+|+++++..++|+.|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34589999999999999999999999 5999999999885 78899999999999999999998888999999999986
No 98
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=124.39 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=73.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--C-CCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~-~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
.++|||+|||..+++++|+++|++ ||.|.++.++.+. + .++|||||+|.+.++|.+|++ |||..++|+.|+|.++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 479999999999999999999999 5999999999886 2 389999999999999999999 9999999999999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 99
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=127.84 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=75.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceE-EEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCee----e
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP----I 398 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~-~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~----l 398 (417)
..++|||+|||..+++++|+++|++ ||.|. +|+++++. +.++|||||+|.+.++|.+|++ |||..+.|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4589999999999999999999999 59999 99999986 6889999999999999999999 9999999999 9
Q ss_pred EEeecCCCCC
Q 014866 399 RVSPSKTPVR 408 (417)
Q Consensus 399 ~V~~a~~~~~ 408 (417)
+|.|+++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987754
No 100
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=128.52 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=77.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhh-cCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCce-eCCeeeEEee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFES-VCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVV-LGSLPIRVSP 402 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~-f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~-l~G~~l~V~~ 402 (417)
+.++|||+|||..+++++|+++|++ | |.|.+|.|+.+. +.++|||||+|.+.++|.+|++ |||.. ++|++|.|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4589999999999999999999998 7 999999999986 7889999999999999999999 99999 9999999999
Q ss_pred cCCCCCCCC
Q 014866 403 SKTPVRPRA 411 (417)
Q Consensus 403 a~~~~~~~~ 411 (417)
+++......
T Consensus 87 a~~~~~~~~ 95 (104)
T 2dhg_A 87 AIPKASRVK 95 (104)
T ss_dssp CCCCCSCCC
T ss_pred ccCCCcCCC
Confidence 987655443
No 101
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=2.8e-16 Score=124.88 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||.++++++|+++|++||.|..|++..+...++|||||+|.+.++|.+|++ |||..+.|++|.|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34678999999999999999999999999999999998766689999999999999999998 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 102
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=5.6e-17 Score=138.97 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=77.3
Q ss_pred ccccccccCcccccCCccchhHHHHhhcccCC--CccccccccchhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCe
Q 014866 181 FANNSLIFNNHNARNGNVNANAAVRRKKSFGQ--GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQV 258 (417)
Q Consensus 181 yafV~~F~~~~~~~~~~~~A~~~a~~~~~~~~--gk~~~~~r~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I 258 (417)
|.|.. |.+.. .+ ..|++.++... |+.. .....+.......++|||+|||+++|+++|+++|++||.|
T Consensus 6 ~~~~~-~~~~~-------~~-~~a~~~~~g~~~~g~~~--~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i 74 (135)
T 2lea_A 6 HHHHH-SSGLV-------PR-GSHMASMTGGQQMGRGS--MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRV 74 (135)
T ss_dssp ----------------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCC
T ss_pred ccccc-ccCCC-------ch-hhhhhhccCCCCCCCCC--CCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 45555 55554 34 66666665432 2221 1122223344567899999999999999999999999999
Q ss_pred eEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 259 VDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 259 ~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
..|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.+++..
T Consensus 75 ~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 75 GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp SEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999998864 479999999999999999998 9999999999999998654
No 103
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=130.13 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+.++|..+.|++|.|.++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 44568999999999999999999999999999999999875 47999999999999999999999999999999999853
No 104
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=7.5e-17 Score=129.74 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCC--eeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCc----ccCCcc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ--VVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGT----MLGFYP 299 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~----~i~g~~ 299 (417)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+. .++|||||+|.+.++|.+|++ |||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45678999999999999999999999995 67899999875 479999999999999999998 9997 489999
Q ss_pred eEEccCC
Q 014866 300 VRVLPSK 306 (417)
Q Consensus 300 l~V~~s~ 306 (417)
|.|.+++
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999986
No 105
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.6e-16 Score=124.25 Aligned_cols=79 Identities=30% Similarity=0.419 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++++++|+++|++||.|.+|.++.++.+ ++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999887553 68999999999999999997 999999999999998
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 106
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-16 Score=123.96 Aligned_cols=80 Identities=29% Similarity=0.409 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||.++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4678999999999999999999999999999999999865 468999999999999999999 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
...
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 644
No 107
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=125.24 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
....++|||+|||.++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++|++..+.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999865 3689999999999999999999999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=3.8e-16 Score=131.31 Aligned_cols=84 Identities=31% Similarity=0.504 Sum_probs=77.0
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
....++|||+|||..+++++|+++|++ ||.|.+|.++++. +.++|||||+|.+.++|.+|+.|||..|+|+.|+|.|
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 345689999999999999999999999 5999999999974 7899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014866 403 SKTPVRP 409 (417)
Q Consensus 403 a~~~~~~ 409 (417)
+++....
T Consensus 112 a~~~~~~ 118 (124)
T 2jwn_A 112 KRTNMPG 118 (124)
T ss_dssp SSCCCSS
T ss_pred CCCCCCC
Confidence 9876443
No 109
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=126.97 Aligned_cols=80 Identities=26% Similarity=0.426 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
...++|||+|||+++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568899999999999999999999999999999998765 468999999999999999999 9999999999999
Q ss_pred ccCCCC
Q 014866 303 LPSKTA 308 (417)
Q Consensus 303 ~~s~~~ 308 (417)
.+++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998654
No 110
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=6e-17 Score=131.36 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=73.0
Q ss_pred cceEEEeCCCC------CCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCC-ee
Q 014866 328 ARTIYCTNIDK------KVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS-LP 397 (417)
Q Consensus 328 ~~~l~V~nLp~------~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G-~~ 397 (417)
.++|||+|||. .+++++|+++|++ ||.|.+|+|+++. +.++|||||+|.+.++|.+|++ |||..+.| +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 48999999999 9999999999999 5999999999987 7899999999999999999998 99999999 99
Q ss_pred eEEeecCC
Q 014866 398 IRVSPSKT 405 (417)
Q Consensus 398 l~V~~a~~ 405 (417)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999965
No 111
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=126.97 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
...++|||+|||+++++++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999999999999999 99999999999999998877 8999999999999999999 99999999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
+++..
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 98643
No 112
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=3.3e-16 Score=127.91 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=76.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCcee---CCeeeE
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVL---GSLPIR 399 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l---~G~~l~ 399 (417)
...++|||+|||..+++++|+++|++| |.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+ .|++|+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF-GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH-SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345899999999999999999999995 999999999985 6889999999999999999999 999988 999999
Q ss_pred EeecCCCCCCC
Q 014866 400 VSPSKTPVRPR 410 (417)
Q Consensus 400 V~~a~~~~~~~ 410 (417)
|.|+++.....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998875543
No 113
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=129.31 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=76.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceE--------EEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG 394 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~--------~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~ 394 (417)
...++|||+|||..+++++|+++|++ ||.|. .|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34689999999999999999999999 59999 69999874 7889999999999999999999 9999999
Q ss_pred CeeeEEeecCCCCCC
Q 014866 395 SLPIRVSPSKTPVRP 409 (417)
Q Consensus 395 G~~l~V~~a~~~~~~ 409 (417)
|+.|+|.|+++....
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887554
No 114
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.9e-16 Score=126.58 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=75.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~---~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ || |..|.|+.+. +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4589999999999999999999999 59 9999999886 67899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 014866 404 KTPVRPR 410 (417)
Q Consensus 404 ~~~~~~~ 410 (417)
++.....
T Consensus 92 ~~~~~~~ 98 (104)
T 1wi8_A 92 DQAQDKD 98 (104)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8876544
No 115
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.7e-16 Score=126.86 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=74.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|..+ +.++|||||+|.+.++|.+|++ ||+..|.|+.|+|.|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34689999999999999999999999 599999999765 4579999999999999999998 99999999999999998
Q ss_pred CCCCCC
Q 014866 405 TPVRPR 410 (417)
Q Consensus 405 ~~~~~~ 410 (417)
+...+.
T Consensus 98 ~~~~~~ 103 (109)
T 1x4a_A 98 SGRGTG 103 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 875443
No 116
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=2.8e-16 Score=123.66 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=72.6
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
..+...++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455778999999999999999999999999999999999875 46999999999999999999988889999999998
Q ss_pred cC
Q 014866 304 PS 305 (417)
Q Consensus 304 ~s 305 (417)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 117
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=126.67 Aligned_cols=77 Identities=27% Similarity=0.320 Sum_probs=72.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEE--------EEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS 395 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~--------v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G 395 (417)
..++|||+|||..+++++|+++|++ ||.|.. +++..+. +.++|||||+|.+.++|.+|++ |||..+.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4589999999999999999999999 599999 9999875 7899999999999999999998 99999999
Q ss_pred eeeEEeecC
Q 014866 396 LPIRVSPSK 404 (417)
Q Consensus 396 ~~l~V~~a~ 404 (417)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 118
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=3.1e-16 Score=122.07 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
.+|||+|||.++++++|+++|++||.|.++.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.+++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999999999998864 369999999999999999998 999999999999999853
No 119
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-16 Score=125.95 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=72.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-h--CCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C--SGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-l--ng~~l~G~~l~V~~ 402 (417)
.+.++|||+|||..+++++|+++|++ ||.|.+|.++++ +|||||+|.+.++|.+|++ | ++..+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 35689999999999999999999999 599999999875 6799999999999999998 6 57899999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++.....
T Consensus 88 a~~~~~~~ 95 (101)
T 2cq1_A 88 SNHKELKT 95 (101)
T ss_dssp CSCSSCCC
T ss_pred cCcccCcC
Confidence 98775554
No 120
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=128.64 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC--cccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng--~~i~g~~l~V~~ 304 (417)
+...++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++ +++ ..+.|++|+|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456789999999999999999999999999999999986 4899999999999999998 764 789999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
++..
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8644
No 121
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=5.6e-16 Score=126.75 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=73.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
.+.++|||+|||..+++++|+++|++ ||.|.+|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34689999999999999999999999 5999999999887 7889999999999999999999 9999999999999998
Q ss_pred C
Q 014866 404 K 404 (417)
Q Consensus 404 ~ 404 (417)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 122
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=5.9e-16 Score=128.38 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=76.9
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
......++|||+|||.++++++|+++|+.||.|..|+++.++. .++|||||+|.+.++|.+|++ |||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455788999999999999999999999999999999999864 468999999999999999998 9999999999999
Q ss_pred ccCCCCCC
Q 014866 303 LPSKTAIA 310 (417)
Q Consensus 303 ~~s~~~~~ 310 (417)
.+++....
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99875433
No 123
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=3.5e-16 Score=122.74 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
+..|||+||++.+|+++|+++|.+ ||+|.++.+.. ++|||||+|.+.++|.+|++ ||+..+.|++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 478999999999999999999999 59999999975 68899999999999999999 99999999999999984
No 124
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=123.65 Aligned_cols=78 Identities=24% Similarity=0.389 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||.++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3568999999999999999999999999999999999864 469999999999999999998 9999999999999997
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
+
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 125
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=8.9e-17 Score=163.68 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=75.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.+.++|||+|||..+|+++|.++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+||. |||..|+|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34589999999999999999999999 5999999999885 7889999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 014866 403 SKTPVR 408 (417)
Q Consensus 403 a~~~~~ 408 (417)
+++...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987543
No 126
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=4.8e-16 Score=129.53 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=73.3
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
....++|||+|||..+++++|+++|++ ||.|.+|++.++. +.++|||||+|.+.++|.+|++ |||..++|++|+|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999999999999999999 5999999999885 6889999999999999999999 99999999999999
Q ss_pred ecC
Q 014866 402 PSK 404 (417)
Q Consensus 402 ~a~ 404 (417)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 127
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=125.17 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++|+++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|+. |||..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999874 468999999999999999997 999999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
+...
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 128
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=130.63 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=76.2
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
......++|||+|||.++++++|+++|++||.|.+|+++.++..++|||||+|.+.++|.+|++ |||..++|++|.|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3445778999999999999999999999999999999999887789999999999999999998 999999999999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
++.
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 853
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.6e-16 Score=126.27 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=75.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
....++|||+|||..+++++|+++|++| |.|..|.+.++ +|||||+|.+.++|.+|+. |||..++|+.|+|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF-GQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3456899999999999999999999995 99999999987 6799999999999999998 9999999999999999
Q ss_pred CCCCCCCCC
Q 014866 404 KTPVRPRAP 412 (417)
Q Consensus 404 ~~~~~~~~~ 412 (417)
++......+
T Consensus 97 ~~~~~~~~~ 105 (109)
T 1x4g_A 97 KESPDMTSG 105 (109)
T ss_dssp CCCCSSCCC
T ss_pred CCCCCCCCC
Confidence 987665543
No 130
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=126.35 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|++||.|..|.++.+...++|||||+|.+.++|.+|++ |||..+.|++|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 44678999999999999999999999999999999999844579999999999999999998 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 131
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.5e-16 Score=127.66 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=77.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++.++..|+|+.|+|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34589999999999999999999999 5999999999985 68899999999999999999998999999999999999
Q ss_pred CCCCCCCC
Q 014866 404 KTPVRPRA 411 (417)
Q Consensus 404 ~~~~~~~~ 411 (417)
++......
T Consensus 104 ~~~~~~~~ 111 (116)
T 1x4b_A 104 VAREESGS 111 (116)
T ss_dssp SSCCCCCC
T ss_pred CCCccCCC
Confidence 88765543
No 132
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=130.26 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=73.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-ln--g~~l~G~~l~V~~ 402 (417)
.+.++|||+|||+.+++++|+++|++ ||.|.+|.|+++ +|||||+|.+.++|.+|++ |+ +..|.|++|+|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 45689999999999999999999999 599999999976 6799999999999999998 87 4789999999999
Q ss_pred cCCCCCCCCC
Q 014866 403 SKTPVRPRAP 412 (417)
Q Consensus 403 a~~~~~~~~~ 412 (417)
+++.......
T Consensus 104 a~~k~~~~~~ 113 (119)
T 2ad9_A 104 SNHKELKTDS 113 (119)
T ss_dssp CSSSSCCCCC
T ss_pred ccCCCCCccc
Confidence 9877655543
No 133
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=127.12 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=75.9
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
+.....++|||+|||.++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455778999999999999999999999999999999999864 469999999999999999999 9999999999999
Q ss_pred ccCCCC
Q 014866 303 LPSKTA 308 (417)
Q Consensus 303 ~~s~~~ 308 (417)
.++...
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998644
No 134
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=125.48 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=69.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCce--eCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVV--LGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~--l~G~~l~V~~ 402 (417)
.++++|||+|||+.+|+++|+++|++| |.|.++.++++ ||||||+|.+.++|.+|++ |+|.. +.|++|.|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 456899999999999999999999995 99999999864 6799999999999999999 98864 8899999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
+++.
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9865
No 135
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=6.6e-16 Score=129.97 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=78.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.|.+|.+..+. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.||
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34689999999999999999999999 5999999999987 7789999999999999999999 9999999999999999
Q ss_pred CCCCCCCCC
Q 014866 404 KTPVRPRAP 412 (417)
Q Consensus 404 ~~~~~~~~~ 412 (417)
.+...+.++
T Consensus 112 ~~~~~~~~~ 120 (124)
T 2kt5_A 112 ASQIDLEHH 120 (124)
T ss_dssp CCTTCCCCC
T ss_pred CCCCCCCCC
Confidence 887665543
No 136
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-15 Score=123.56 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=76.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+. ++..++|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 34589999999999999999999999 5999999999985 7899999999999999999998 578999999999999
Q ss_pred CCCCCCCC
Q 014866 404 KTPVRPRA 411 (417)
Q Consensus 404 ~~~~~~~~ 411 (417)
.+......
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqg_A 91 NSKQSQDS 98 (103)
T ss_dssp CTTCCCCC
T ss_pred CCCCcCCC
Confidence 88765544
No 137
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=8.8e-16 Score=131.66 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=77.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
....++|||+|||..+++++|+++|++| |.|.+|.|.++. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY-GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH-SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999995 999999999886 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 014866 402 PSKTPVRPR 410 (417)
Q Consensus 402 ~a~~~~~~~ 410 (417)
|+++.....
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998875543
No 138
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=128.89 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=74.6
Q ss_pred ccceEEEeCCCCCCCHHHHH---HHHhhcCCceEEEEEeccCC-----CCceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 014866 327 CARTIYCTNIDKKVTQADVK---LFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 397 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~---~~F~~f~G~I~~v~i~~d~~-----~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~ 397 (417)
..++|||+|||..+++++|+ ++|++ ||.|..|.|.++.+ .++|||||+|.+.++|.+|++ |||..|.|++
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 35899999999999999999 99999 59999999998863 567999999999999999999 9999999999
Q ss_pred eEEeecCCCCC
Q 014866 398 IRVSPSKTPVR 408 (417)
Q Consensus 398 l~V~~a~~~~~ 408 (417)
|+|.|+++...
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999988763
No 139
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=124.73 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
+...++|||+|||+++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|+. |||..+.|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678899999999999999999999999999999999875 368999999999999999999 999999999999999
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
++
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 140
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=121.34 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=71.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
+.++|||+|||..+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|++ |||..+.|+.|+|.|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4589999999999999999999999 5999999997 5799999999999999998 999999999999999988
Q ss_pred CCCCC
Q 014866 406 PVRPR 410 (417)
Q Consensus 406 ~~~~~ 410 (417)
...+.
T Consensus 80 ~~~~~ 84 (90)
T 2dnq_A 80 KSKAS 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 141
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.7e-16 Score=121.35 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=69.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
+|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++|||..++|++|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999 5999999999885 68999999999999999999999999999999999986
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=124.74 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=73.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.| +++.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 34689999999999999999999999 5987 455554 7889999999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 014866 404 KTPVRPRA 411 (417)
Q Consensus 404 ~~~~~~~~ 411 (417)
++...+..
T Consensus 89 ~~~~~~~~ 96 (101)
T 2fc9_A 89 GPRGSPNS 96 (101)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98866554
No 143
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=127.74 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=73.2
Q ss_pred ccceEEEeCCCCCC------CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe-ee
Q 014866 327 CARTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PI 398 (417)
Q Consensus 327 ~~~~l~V~nLp~~~------te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~-~l 398 (417)
..++|||+|||..+ ++++|+++|++ ||.|.+|.|++..|.++|||||+|.+.++|.+|+. |||..+.|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 35899999999999 78999999999 59999999996668899999999999999999999 999999998 99
Q ss_pred EEeecCCC
Q 014866 399 RVSPSKTP 406 (417)
Q Consensus 399 ~V~~a~~~ 406 (417)
+|.|+...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999754
No 144
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=126.45 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=75.4
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
.....++|||+|||.++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999998875 368999999999999999999 99999999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98654
No 145
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=127.24 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=76.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|+..|+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 34589999999999999999999999 5999999999985 68999999999999999999988999999999999999
Q ss_pred CCCCCCC
Q 014866 404 KTPVRPR 410 (417)
Q Consensus 404 ~~~~~~~ 410 (417)
++.....
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 8775543
No 146
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.3e-16 Score=122.03 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=73.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||..+++++|+++|++ | .|..|.|+++. +.++|||||+|.+.++|.+|++|||..|+|+.|.|.++++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 3589999999999999999999999 6 89999999985 7889999999999999999999999999999999999987
Q ss_pred CC
Q 014866 406 PV 407 (417)
Q Consensus 406 ~~ 407 (417)
.+
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 147
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=124.49 Aligned_cols=79 Identities=32% Similarity=0.486 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 44668999999999999999999999999999999999875 468999999999999999999 9999999999999997
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 148
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.6e-16 Score=124.14 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....++|||+|||.++|+++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34678899999999999999999999999999999999873 468999999999999999998 9999999999999998
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
+.
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 149
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=5.4e-16 Score=124.43 Aligned_cols=77 Identities=34% Similarity=0.466 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
+++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999864 469999999999999999998 999999999999999864
No 150
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=1.9e-16 Score=128.37 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCC-c
Q 014866 229 IIRRTVYVSDIDQ------QVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGF-Y 298 (417)
Q Consensus 229 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g-~ 298 (417)
...++|||+|||+ ++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|.+|++ |||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999999998863 69999999999999999998 99999999 9
Q ss_pred ceEEccCC
Q 014866 299 PVRVLPSK 306 (417)
Q Consensus 299 ~l~V~~s~ 306 (417)
+|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999874
No 151
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=9e-16 Score=126.41 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=73.1
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
....++|||+|||..+++++|+++|++ ||.|.+|.+.++. +.++|||||+|.+.++|.+|++..+..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 345689999999999999999999999 5999999999986 7899999999999999999999446999999999999
Q ss_pred cCCCCC
Q 014866 403 SKTPVR 408 (417)
Q Consensus 403 a~~~~~ 408 (417)
+.+...
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 986643
No 152
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=125.80 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=74.7
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecC-C--CCCceEEEEEecCHHHHHHHHH-h-cCcccCCcceE
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-P--NSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVR 301 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~--~~skG~aFV~F~~~e~A~~Al~-l-ng~~i~g~~l~ 301 (417)
.....++|||+|||+++++++|+++|++||.|..|+++.+ + ..++|||||+|.+.++|.+|+. | |+..+.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999988 3 3479999999999999999998 9 99999999999
Q ss_pred EccCCCC
Q 014866 302 VLPSKTA 308 (417)
Q Consensus 302 V~~s~~~ 308 (417)
|.+++..
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9998643
No 153
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1.3e-15 Score=124.19 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCC---cceEE
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGF---YPVRV 302 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g---~~l~V 302 (417)
....++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+.| ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34678999999999999999999999999999999999874 368999999999999999998 99999988 99999
Q ss_pred ccCCCC
Q 014866 303 LPSKTA 308 (417)
Q Consensus 303 ~~s~~~ 308 (417)
.++...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998644
No 154
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=8.4e-16 Score=127.50 Aligned_cols=81 Identities=19% Similarity=0.387 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34668999999999999999999999999999999999874 468999999999999999997 999999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
++..
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8654
No 155
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=124.39 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEE-EEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC-RICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
...++|||+|||+++++++|+++|++||.|..| +++.++. .++|||||+|.+.++|.+|+. |||..+.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9998854 368999999999999999999 999999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8643
No 156
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.5e-16 Score=125.52 Aligned_cols=82 Identities=32% Similarity=0.413 Sum_probs=75.3
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
.....++|||+|||+++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999999999999999874 479999999999999999999 99999999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
++...
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98643
No 157
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=124.71 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999875 368999999999999999998 999999999999998
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 158
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-16 Score=128.31 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=74.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3589999999999999999999999 5999999999885 6889999999999999999998 9999999999999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
++..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8764
No 159
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=126.03 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||.++++++|+++|++||.|.+|.++.++.+ ++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45688999999999999999999999999999999988753 68999999999999999998 9999999999999998
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 160
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=124.19 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE--------EEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLG 296 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~ 296 (417)
+...++|||+|||.++++++|+++|++||.|.. |+++.++. .++|||||+|.+.++|.+|++ |||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456789999999999999999999999999999 99999865 469999999999999999998 9999999
Q ss_pred CcceEEccC
Q 014866 297 FYPVRVLPS 305 (417)
Q Consensus 297 g~~l~V~~s 305 (417)
|++|+|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999986
No 161
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=125.70 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=72.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4589999999999999999999999 5999888777764 6789999999999999999998 9999999999999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8653
No 162
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=4.7e-16 Score=131.07 Aligned_cols=83 Identities=23% Similarity=0.262 Sum_probs=76.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|.|.|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4589999999999999999999999 5999999999885 6889999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 014866 404 KTPVRPR 410 (417)
Q Consensus 404 ~~~~~~~ 410 (417)
++...+.
T Consensus 100 ~~~~~~~ 106 (126)
T 3ex7_B 100 FVRGPPK 106 (126)
T ss_dssp EESSSCC
T ss_pred cCCCCCC
Confidence 7765544
No 163
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=135.44 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=73.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G--~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
..++|||+|||..+++++|+++|++ || .|.+|+|+.|. |.++|||||+|.+.++|.+|++ |||..|+|+.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3579999999999999999999999 59 99999999885 7899999999999999999999 99999999999999
Q ss_pred ecCCC
Q 014866 402 PSKTP 406 (417)
Q Consensus 402 ~a~~~ 406 (417)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99653
No 164
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=8.3e-16 Score=126.47 Aligned_cols=82 Identities=26% Similarity=0.397 Sum_probs=75.0
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
......++|||+|||..+++++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |||..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34557789999999999999999999999999999999988653 68999999999999999998 9999999999999
Q ss_pred ccCCC
Q 014866 303 LPSKT 307 (417)
Q Consensus 303 ~~s~~ 307 (417)
.+++.
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 99853
No 165
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=3.7e-16 Score=122.59 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++ ||+..+.|++|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999976 56999999999999999999 9999999999999986
No 166
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.5e-16 Score=126.72 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=70.4
Q ss_pred ccceEEEeCCCC-CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeeEEee
Q 014866 327 CARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIRVSP 402 (417)
Q Consensus 327 ~~~~l~V~nLp~-~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng--~~l~G~~l~V~~ 402 (417)
+.++|||+|||+ .+++++|+++|++| |.|.+|.|+++ +|||||+|.+.++|.+|++ ||+ ..|.|++|+|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 568999999999 99999999999995 99999999876 4699999999999999998 875 569999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
|+......
T Consensus 89 a~~~~~~~ 96 (102)
T 1x4d_A 89 SQKYKRIK 96 (102)
T ss_dssp ECCCTTSS
T ss_pred CCCCCCCC
Confidence 98654433
No 167
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=121.82 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCc-ceEE
Q 014866 231 RRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY-PVRV 302 (417)
Q Consensus 231 ~~~lfV~nLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~-~l~V 302 (417)
+++|||+|||..+ ++++|+++|++||.|.+|.+.++.+.++|||||+|.+.++|.+|++ |||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7899999999999999999986555689999999999999999998 999999999 8876
No 168
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=5.9e-16 Score=131.55 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=75.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
.+.++|||+|||..+++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|.+|++ |||..|+|++|+|.|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45689999999999999999999999 5999999999886 6899999999999999999999 999999999999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
+++.
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9875
No 169
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=6.8e-16 Score=121.77 Aligned_cols=78 Identities=36% Similarity=0.598 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
..++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+.+||..+.|++|.|.+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 357899999999999999999999999999999998864 469999999999999999999999999999999999864
No 170
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=2.9e-16 Score=119.98 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
+|||+|||+++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++++|..++|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999998864 4799999999999999999999999999999999874
No 171
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=124.16 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCee-EEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcc----
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYP---- 299 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~---- 299 (417)
....++|||+|||+++++++|+++|++||.|. +|+++.++. .++|||||+|.+.++|.+|++ |||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 999999875 468999999999999999999 9999999999
Q ss_pred eEEccCCCC
Q 014866 300 VRVLPSKTA 308 (417)
Q Consensus 300 l~V~~s~~~ 308 (417)
|+|.+++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998643
No 172
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.4e-16 Score=125.28 Aligned_cols=81 Identities=19% Similarity=0.339 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++++++|+++|++||.|..|+++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999865 368999999999999999997 999999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
++..
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8643
No 173
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.8e-15 Score=132.38 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=76.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999 5999999999986 6789999999999999999999 999999999999999
Q ss_pred cCCCCCC
Q 014866 403 SKTPVRP 409 (417)
Q Consensus 403 a~~~~~~ 409 (417)
+++....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9876543
No 174
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=126.52 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....++|||+|||.++|+++|+++|++||.|.+|.++.+.. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999999999999873 468999999999999999998 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 175
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=121.69 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC---CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~---skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
..++|||+|||.++|+++|+++|++||.|.+|.++.+..+ ++|||||+|.+.++|.+|++ |||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4678999999999999999999999999999999988753 68999999999999999999 9999999999999997
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 176
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=121.80 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCe-eeEE
Q 014866 329 RTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRV 400 (417)
Q Consensus 329 ~~l~V~nLp~~~------te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~-~l~V 400 (417)
++|||+|||..+ ++++|+++|++ ||.|.+|.++++.|.++|||||+|.+.++|.+|++ |||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 78999999999 59999999987668899999999999999999999 999999999 8877
Q ss_pred e
Q 014866 401 S 401 (417)
Q Consensus 401 ~ 401 (417)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 177
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.3e-16 Score=126.32 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=70.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
++|||+|||..+++++|+++|++| |.|.++.+.++. +.++|||||+|.+.+ |.+|+. |||..++|+.|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999999999999999999995 999999999886 788999999999999 999999 999999999999999988
Q ss_pred CCCCCC
Q 014866 406 PVRPRA 411 (417)
Q Consensus 406 ~~~~~~ 411 (417)
...+..
T Consensus 80 ~~~~~~ 85 (90)
T 2ki2_A 80 KKSLEH 85 (90)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 755443
No 178
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=122.90 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=71.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeC--CeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG--SLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~--G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ ||.|.+|.+.++ +|||||+|.+.++|.+|++ |||..+. |++|+|.|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 4589999999999999999999999 599999999865 6799999999999999999 9999999 999999999
Q ss_pred CCCCC
Q 014866 404 KTPVR 408 (417)
Q Consensus 404 ~~~~~ 408 (417)
++...
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=129.97 Aligned_cols=80 Identities=31% Similarity=0.533 Sum_probs=74.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+.|||..|+|+.|+|.|++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999 5999999999886 688999999999999999999999999999999999997
Q ss_pred CCC
Q 014866 405 TPV 407 (417)
Q Consensus 405 ~~~ 407 (417)
+..
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 180
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=124.52 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=74.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCc-eEEEEEe-ccC--CCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeE
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLL-GDY--HHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIR 399 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~-I~~v~i~-~d~--~~~kG~aFV~F~~~e~A~~Al~-ln--g~~l~G~~l~ 399 (417)
..++|||+|||..+++++|+++|++| |. |.+|.++ .+. +.++|||||+|.+.++|.+|++ || +..+.|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV-TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh-cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35899999999999999999999995 98 9999998 555 5889999999999999999999 96 5999999999
Q ss_pred EeecCCCCCC
Q 014866 400 VSPSKTPVRP 409 (417)
Q Consensus 400 V~~a~~~~~~ 409 (417)
|.|+++...+
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999877554
No 181
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.9e-16 Score=125.50 Aligned_cols=81 Identities=30% Similarity=0.401 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999998865 368999999999999999998 999999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
++..
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 182
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=119.29 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=71.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||..+++++|+++|++ ||.|..|.+.+ +||||+|.+.++|.+|++ |||..+.|+.|+|.|+++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4589999999999999999999999 59999999974 499999999999999998 999999999999999988
Q ss_pred CCCCCC
Q 014866 406 PVRPRA 411 (417)
Q Consensus 406 ~~~~~~ 411 (417)
...+.+
T Consensus 82 ~~~~~~ 87 (92)
T 2dgt_A 82 RLRTAS 87 (92)
T ss_dssp CCSCCC
T ss_pred CCCCCC
Confidence 766544
No 183
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-16 Score=123.74 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=72.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|++.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999 5999999999985 7889999999999999999999 9999999999999886
Q ss_pred C
Q 014866 404 K 404 (417)
Q Consensus 404 ~ 404 (417)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 184
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=4.4e-16 Score=124.47 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=71.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
+.++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3589999999999999999999999 5999888887765 6789999999999999999999 9999999999999998
Q ss_pred CC
Q 014866 404 KT 405 (417)
Q Consensus 404 ~~ 405 (417)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 185
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=124.97 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hc------CcccCCc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LA------GTMLGFY 298 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-ln------g~~i~g~ 298 (417)
....++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+. || +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 45678999999999999999999999999999999999875 469999999999999999998 99 9999999
Q ss_pred ceEEccCCCC
Q 014866 299 PVRVLPSKTA 308 (417)
Q Consensus 299 ~l~V~~s~~~ 308 (417)
+|.|.++...
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998643
No 186
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-15 Score=120.23 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=71.4
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcC--CceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVC--GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~--G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ | |.|..|.+. +|||||+|.+.++|.+|+. |||..+.|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34689999999999999999999999 8 899999874 5699999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++.....
T Consensus 86 a~~~~~~~ 93 (99)
T 2cpd_A 86 AKPVDKDS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99876544
No 187
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.4e-16 Score=124.76 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=71.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~ 407 (417)
++|||+|||..+++++|+++|++| |.|.+|.+..+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.|+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY-GPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH-CCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 479999999999999999999995 99999999987 78899999999999999999 99999999999999998876
Q ss_pred CC
Q 014866 408 RP 409 (417)
Q Consensus 408 ~~ 409 (417)
..
T Consensus 77 ~~ 78 (101)
T 2hvz_A 77 RR 78 (101)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 188
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=118.93 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=71.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||..+++++|+++|++| |.|..|.+.+ +||||+|.+.++|.+|++ |||..++|+.|+|.|+++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERR-GRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHH-SCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcC-CCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 45899999999999999999999995 9999999974 499999999999999999 999999999999999998
Q ss_pred CCCCCCC
Q 014866 406 PVRPRAP 412 (417)
Q Consensus 406 ~~~~~~~ 412 (417)
...+..+
T Consensus 81 ~~~~~~~ 87 (90)
T 2dnp_A 81 GQKKSGP 87 (90)
T ss_dssp CCCCCSC
T ss_pred CCCCCCC
Confidence 7554443
No 189
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.1e-15 Score=125.64 Aligned_cols=77 Identities=27% Similarity=0.476 Sum_probs=71.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
....++|||+|||..+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|++ |||..++|+.|.|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456799999999999999999999999 5999999997 6799999999999999999 9999999999999999
Q ss_pred CCCCC
Q 014866 404 KTPVR 408 (417)
Q Consensus 404 ~~~~~ 408 (417)
++...
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87654
No 190
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=8.1e-16 Score=127.24 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=69.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..+|||+|||+.+++++|+++|++ || .|..+.+..+ .++|||||+|.+.++|.+|++ |||..++|+.|+|.+++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 479999999999999999999999 49 8999998643 478999999999999999998 999999999999999986
Q ss_pred CC
Q 014866 406 PV 407 (417)
Q Consensus 406 ~~ 407 (417)
++
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 54
No 191
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=125.96 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=75.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||+.+|+++|+++|++ ||.+ .|.|+.+. +.++|||||+|.+.++|.+|+++|+..|+|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 3589999999999999999999999 5955 99999887 7899999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 014866 406 PVRPRA 411 (417)
Q Consensus 406 ~~~~~~ 411 (417)
+.....
T Consensus 92 ~~~~~~ 97 (102)
T 1wez_A 92 AGTSGS 97 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765543
No 192
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=4e-16 Score=158.88 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+.+|+++|.++|++||.|..|.|+.++. .++|||||+|.+.++|.+||. |||..|.|++|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4567999999999999999999999999999999999864 469999999999999999998 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 643
No 193
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=2.7e-15 Score=121.96 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=71.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
+.++|||+|||..+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+|++ |||..|.|+.|.|.|+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF-GKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH-SCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 45899999999999999999999995 999999996 4599999999999999999 999999999999999988
Q ss_pred CCCCCCC
Q 014866 406 PVRPRAP 412 (417)
Q Consensus 406 ~~~~~~~ 412 (417)
.......
T Consensus 83 ~~~~~~~ 89 (103)
T 2dgu_A 83 PDQKRKE 89 (103)
T ss_dssp CCCCCCC
T ss_pred Ccccchh
Confidence 7655443
No 194
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=1.3e-15 Score=125.50 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=70.2
Q ss_pred ccceEEEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~-~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||.. +++++|+++|++ ||.|..|.+ ++|||||+|.+.++|.+|++ |||..++|+.|+|.|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3589999999999 999999999999 599999999 47799999999999999998 99999999999999998
Q ss_pred CCCCCC
Q 014866 405 TPVRPR 410 (417)
Q Consensus 405 ~~~~~~ 410 (417)
++...+
T Consensus 99 ~~~~~~ 104 (110)
T 1wf1_A 99 EPKPDR 104 (110)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 664443
No 195
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=124.13 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|++||.|..|.+..+. .++|||||+|.+.++|.+|++ ||+..+.|++|.|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3467899999999999999999999999999999997654 378999999999999999997 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 196
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=7.1e-16 Score=126.07 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCC------cHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCc-c
Q 014866 228 EIIRRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY-P 299 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~-~ 299 (417)
....++|||+|||+.+ |+++|+++|++||.|.+|.+++..+.++|||||+|.+.++|.+|+. |||..+.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3457899999999999 8899999999999999999986555679999999999999999999 999999998 9
Q ss_pred eEEccCC
Q 014866 300 VRVLPSK 306 (417)
Q Consensus 300 l~V~~s~ 306 (417)
|.|.++.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 9999975
No 197
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=123.29 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=71.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC-----eeeEE
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS-----LPIRV 400 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G-----~~l~V 400 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+ |||||+|.+.++|.+|++ |||..|.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 3589999999999999999999999 599999999887 799999999999999999 99999999 99999
Q ss_pred eecCCCCCCC
Q 014866 401 SPSKTPVRPR 410 (417)
Q Consensus 401 ~~a~~~~~~~ 410 (417)
.++++....+
T Consensus 88 ~~a~~~~~~~ 97 (108)
T 1x4c_A 88 KVDGPRSPSY 97 (108)
T ss_dssp EESSCCSCCC
T ss_pred EeCCCCCCCC
Confidence 9998865433
No 198
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-16 Score=121.89 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4678999999999999999999999999999999999864 469999999999999999999 9999999999998875
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 199
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2.9e-15 Score=120.75 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=70.0
Q ss_pred ccccceEEEeCCCC-CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 325 EMCARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 325 ~~~~~~l~V~nLp~-~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
..+.++|||+|||. .+++++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++ |||..++|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999998 9999999999999 5999999993 7899999999999999999 999999999999999
Q ss_pred cCCCC
Q 014866 403 SKTPV 407 (417)
Q Consensus 403 a~~~~ 407 (417)
+++..
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 200
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.5e-16 Score=128.06 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHH---HHHhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCcccCCcc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLA---ALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYP 299 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~-----~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~ 299 (417)
...++|||+|||+++++++|+ ++|++||.|.+|.++.+.. .++|||||+|.+.++|.+|++ |||..+.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456789999999999999999 9999999999999998875 357999999999999999999 9999999999
Q ss_pred eEEccCCCC
Q 014866 300 VRVLPSKTA 308 (417)
Q Consensus 300 l~V~~s~~~ 308 (417)
|+|.++.+.
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999998643
No 201
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1.3e-15 Score=124.40 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=74.7
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCccc---CCcce
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTML---GFYPV 300 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i---~g~~l 300 (417)
.+...++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999875 368999999999999999998 999987 89999
Q ss_pred EEccCCCC
Q 014866 301 RVLPSKTA 308 (417)
Q Consensus 301 ~V~~s~~~ 308 (417)
.|.++...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998643
No 202
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=132.93 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=74.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEE--EEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCc----eeCC
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGV----VLGS 395 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~--v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~----~l~G 395 (417)
....++|||+|||+.+|+++|+++|++ ||.|.. |+|++|. +.++|||||+|.+. +|.+|+. |||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 345689999999999999999999999 599977 9999987 78999999999999 9999999 9999 9999
Q ss_pred eeeEEeecCCCC
Q 014866 396 LPIRVSPSKTPV 407 (417)
Q Consensus 396 ~~l~V~~a~~~~ 407 (417)
+.|+|.|+++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998763
No 203
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-15 Score=123.75 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=74.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCcee--------CC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVL--------GS 395 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l--------~G 395 (417)
...++|||+|||..+++++|+++|++ ||.|..|.|+++. +.++|||||+|.+.++|.+|++ |||..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 34689999999999999999999999 5999999999986 6889999999999999999999 999999 68
Q ss_pred eeeEEeecCCC
Q 014866 396 LPIRVSPSKTP 406 (417)
Q Consensus 396 ~~l~V~~a~~~ 406 (417)
++|.|.|++++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 204
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=123.13 Aligned_cols=76 Identities=24% Similarity=0.211 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcc--cCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM--LGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~--i~g~~l~V~~ 304 (417)
..++++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++ |++.. +.|++|.|.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 346789999999999999999999999999999999864 5799999999999999998 98875 7899999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
++.
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 205
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=126.37 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=72.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~---~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|++ || |.+|.|.++. +.++|||||+|.+.++|.+|+.|||..++|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34689999999999999999999999 59 9999999874 6889999999999999999999999999999999999
Q ss_pred cCCCC
Q 014866 403 SKTPV 407 (417)
Q Consensus 403 a~~~~ 407 (417)
+++..
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98753
No 206
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=128.71 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=71.5
Q ss_pred ccceEEEeCCCCCCCHHHHH----HHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 327 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~----~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
+.++|||+|||+.+++++|+ ++|++| |.|.+|.+.. .+.++|||||+|.+.++|.+|+. |||..|.|++|+|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 45899999999999999876 699995 9999998865 36789999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 014866 402 PSKTPV 407 (417)
Q Consensus 402 ~a~~~~ 407 (417)
|+++..
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998764
No 207
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=121.72 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=71.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
...++|||+|||..+++++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+|++ |||..++|+.|+|.|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34689999999999999999999999 4988777 4457889999999999999999999 99999999999999998
Q ss_pred CCCCC
Q 014866 405 TPVRP 409 (417)
Q Consensus 405 ~~~~~ 409 (417)
+....
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76543
No 208
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=122.15 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhc-CCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcc-cCCcceEEc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTM-LGFYPVRVL 303 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~-i~g~~l~V~ 303 (417)
....++|||+|||+++|+++|+++|++ ||.|.+|+++.+.. .++|||||+|.+.++|.+|++ |+|.. +.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 346789999999999999999999999 99999999999873 369999999999999999999 99999 999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
++...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98643
No 209
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=126.17 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC--cccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng--~~i~g~~l~V~~s 305 (417)
...++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++ +++ ..+.|++|+|.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 45789999999999999999999999999999999986 5899999999999999998 774 6799999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 105 ~~k 107 (119)
T 2ad9_A 105 NHK 107 (119)
T ss_dssp SSS
T ss_pred cCC
Confidence 644
No 210
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.5e-16 Score=128.23 Aligned_cols=81 Identities=20% Similarity=0.080 Sum_probs=74.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCce-EEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I-~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
...++|||+|||..+++++|+++|++ ||.| ..|.|+.+. +.++|||||+|.+.++|.+|+++|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 34589999999999999999999999 5999 899999887 78999999999999999999999999999999999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
.+..
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6653
No 211
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=123.54 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=71.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng--~~l~G~~l~V~~ 402 (417)
.+.++|||+|||..+++++|+++|++ ||.|..|.++++ +|||||+|.+.++|.+|++ |++ ..+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35689999999999999999999999 599999999875 6799999999999999998 865 469999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++....+
T Consensus 88 a~~~~~~~ 95 (104)
T 1wex_A 88 STSKRITR 95 (104)
T ss_dssp CSSSSCCC
T ss_pred ccCccccC
Confidence 98765444
No 212
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.8e-15 Score=128.53 Aligned_cols=81 Identities=26% Similarity=0.248 Sum_probs=74.9
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
.+...++|||+|||+++++++|+++|++||.|..|+++.++. .++|||||+|.+.++|.+|++ |||..|.|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999875 469999999999999999998 99999999999999
Q ss_pred cCCC
Q 014866 304 PSKT 307 (417)
Q Consensus 304 ~s~~ 307 (417)
++..
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 9854
No 213
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=124.92 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=74.0
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
.....++|||+|||+++|+++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ +++ .+.|++|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345678999999999999999999999999999999999865 479999999999999999999 888 8999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98644
No 214
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=123.48 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....++|||+|||.++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34578999999999999999999999999999999999875 368999999999999999999 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 643
No 215
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=2.1e-15 Score=122.61 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
....++|||+|||+++++++|+++|++|| |.+|+++.++. .++|||||+|.+.++|.+|+.|||..+.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 99999999875 3699999999999999999999999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
...
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 216
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.3e-15 Score=125.17 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||.++|+++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|+. |||..+.|++|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34668999999999999999999999999999999998864 468999999999999999998 999999999999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
+..
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 853
No 217
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=123.02 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=75.0
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEcc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 304 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~ 304 (417)
.....++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+..++..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 345678999999999999999999999999999999999865 468999999999999999998899999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8643
No 218
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2e-15 Score=123.36 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....++|||+|||+.+++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35678999999999999999999999999999999998874 368999999999999999999 9999999999999986
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 219
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=7.8e-16 Score=128.21 Aligned_cols=79 Identities=22% Similarity=0.396 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..++|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999998864 469999999999999999998 999999999999988
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 220
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=121.97 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-h--cCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L--AGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-l--ng~~i~g~~l~V~~s 305 (417)
...++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++ | ++..+.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 46789999999999999999999999999999999876 5899999999999999998 6 467799999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 644
No 221
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-15 Score=123.00 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=69.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||..+++++|+++|++ ||.|.++++. .++|||||+|.+.++|.+|+. |||..++|+.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4689999999999999999999999 5999999998 357799999999999999998 999999999999999986
Q ss_pred C
Q 014866 406 P 406 (417)
Q Consensus 406 ~ 406 (417)
.
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 222
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=117.83 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||.++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++ |||..+.|++|.|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 4567899999999999999999999999999999998 4799999999999999998 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 223
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=122.81 Aligned_cols=81 Identities=22% Similarity=0.191 Sum_probs=74.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEE-EEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~-v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~ 404 (417)
...+|||+|||+.+++++|+++|++ ||.|.. |.|+.+. +.++|||||+|.+.++|.+|+..|+..++|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 4589999999999999999999999 599987 8888875 789999999999999999999989999999999999997
Q ss_pred CCCC
Q 014866 405 TPVR 408 (417)
Q Consensus 405 ~~~~ 408 (417)
+...
T Consensus 93 ~~~~ 96 (104)
T 1wg5_A 93 RAEV 96 (104)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 6543
No 224
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=124.37 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=71.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
..+|||+|||+++++++|+++|++ | .|..|.|+.+. |+++|||||+|.+.++|.+|+.||+..|+||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 479999999999999999999999 6 79999999887 7899999999999999999999999999999999998854
No 225
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-16 Score=118.71 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=69.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
++|||+|||..+++++|+++|++ ||.|..+.++++. +.++|||||+|.+.++|.+|++ ++ ..++|++|.|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999 5999999999985 6889999999999999999999 88 9999999999987
No 226
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=127.25 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=73.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCc---eEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~---I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
..++|||+|||+++|+++|+++|++ ||. |..|+|+.+. ++++|||||+|.+.++|.+|++|||..|+|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 3589999999999999999999999 598 8999999876 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
+.+.
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8543
No 227
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=121.13 Aligned_cols=79 Identities=25% Similarity=0.272 Sum_probs=69.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCc-eEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCC-ceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG-VVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~-I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng-~~l~G~~l~V~~a 403 (417)
..++|||+|||..+++++|+++|++ ||. |..+.+. ++|||||+|.+.++|.+|++ ||| ..++|+.|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4589999999999999999999999 599 6666663 47799999999999999999 999 9999999999999
Q ss_pred CCCCCCCC
Q 014866 404 KTPVRPRA 411 (417)
Q Consensus 404 ~~~~~~~~ 411 (417)
++......
T Consensus 81 ~~~~~~~~ 88 (93)
T 2cqh_A 81 VSKKLRSS 88 (93)
T ss_dssp CCCCCCCC
T ss_pred cCccccCC
Confidence 88755443
No 228
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=124.48 Aligned_cols=82 Identities=24% Similarity=0.327 Sum_probs=74.7
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCee--------EEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCccc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTML 295 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i 295 (417)
.....++|||+|||+++|+++|+++|++||.|. .|+++.++. .++|||||+|.+.++|.+|++ |||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345778999999999999999999999999999 699998864 468999999999999999998 999999
Q ss_pred CCcceEEccCCCC
Q 014866 296 GFYPVRVLPSKTA 308 (417)
Q Consensus 296 ~g~~l~V~~s~~~ 308 (417)
.|++|.|.+++..
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999998653
No 229
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=133.03 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.|+. .++|||||+|.+.++|.+|++ |||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999865 469999999999999999999 999999999999999
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 230
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=126.78 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=72.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
....++|||+|||..+++++|+++|++ ||.|..++++++. +.++|||||+|.+.++|.+|++ |||..|+|++|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345689999999999999999999999 5999999999885 6889999999999999999998 99999999999999
Q ss_pred ec
Q 014866 402 PS 403 (417)
Q Consensus 402 ~a 403 (417)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 231
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=123.33 Aligned_cols=78 Identities=32% Similarity=0.458 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
..++|||+|||.++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 457899999999999999999999999999999998864 368999999999999999998 99999999999999985
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=1.4e-15 Score=122.01 Aligned_cols=80 Identities=26% Similarity=0.384 Sum_probs=72.8
Q ss_pred ccceEEEeCCCCCCCHHHHH----HHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 327 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~----~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
+.++|||+|||..+++++|+ ++|++ ||.|..|.+... +.++|||||+|.+.++|.+|++ |||..++|+.|+|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 46899999999999999999 99999 599999998743 5678899999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 014866 402 PSKTPVR 408 (417)
Q Consensus 402 ~a~~~~~ 408 (417)
|+++...
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9987643
No 233
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=122.26 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCc--ccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGT--MLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~--~i~g~~l~V~~s 305 (417)
...++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++ |++. .+.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45789999999999999999999999999999999875 5899999999999999998 8664 589999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 89 ~~~ 91 (104)
T 1wex_A 89 TSK 91 (104)
T ss_dssp SSS
T ss_pred cCc
Confidence 654
No 234
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=124.42 Aligned_cols=75 Identities=31% Similarity=0.309 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCc--ccCCcceEEcc
Q 014866 229 IIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGT--MLGFYPVRVLP 304 (417)
Q Consensus 229 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~--~i~g~~l~V~~ 304 (417)
...++|||+|||+ ++|+++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++ |++. .+.|++|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 4678999999999 99999999999999999999998764 799999999999999998 8864 48999999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
++.
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 864
No 235
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=115.86 Aligned_cols=73 Identities=18% Similarity=0.378 Sum_probs=68.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-h-CCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-l-ng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ | +|..++|++|+|.|++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4589999999999999999999999 599999999874 6799999999999999999 8 9999999999999985
No 236
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=122.56 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC---CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+++++++|+++|+.|| |.+|.++.++. .++|||||+|.+.++|.+|+.||+..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 99999999874 4699999999999999999999999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
...
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 237
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.5e-15 Score=121.92 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=70.3
Q ss_pred cccceEEEeCCCC-CCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~-~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a 403 (417)
.+.++|||+|||. .+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|++ |||..+.|++|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 3468999999998 9999999999999 5999999994 6799999999999999999 9999999999999999
Q ss_pred CCCCCCCCC
Q 014866 404 KTPVRPRAP 412 (417)
Q Consensus 404 ~~~~~~~~~ 412 (417)
++...+...
T Consensus 81 ~~~~~~~~~ 89 (96)
T 2kvi_A 81 SSNARPQFD 89 (96)
T ss_dssp ECCCC----
T ss_pred CcCCCCCCC
Confidence 887665543
No 238
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=120.84 Aligned_cols=77 Identities=26% Similarity=0.372 Sum_probs=69.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||..+++++|+++|++ ||.|. +.++.+ .++|||||+|.+.++|.+|++ |||..++|+.|+|.|+++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4589999999999999999999999 59996 666654 578899999999999999998 999999999999999987
Q ss_pred CC
Q 014866 406 PV 407 (417)
Q Consensus 406 ~~ 407 (417)
..
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 239
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=2.8e-15 Score=124.24 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=72.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
+.++|||+|||..+++++|+++|++ ||.|.+|.++.+. .++|||||+|.+.++|.+|++ |||..++|+.|.|.|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3589999999999999999999999 5999999998764 458999999999999999999 999999999999999986
Q ss_pred CC
Q 014866 406 PV 407 (417)
Q Consensus 406 ~~ 407 (417)
..
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 43
No 240
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=122.31 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=72.4
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
.....++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|+. |+|..+.|++|.|.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3456789999999999999999999999999999999987 5899999999999999997 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 241
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=117.60 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-h-cCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-l-ng~~i~g~~l~V~~s 305 (417)
....++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+. | +|..+.|++|.|.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 346689999999999999999999999999999999974 5899999999999999999 8 999999999999986
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 242
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=5.7e-15 Score=124.18 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....++|||+|||.++++++|+++|+.||.|.+|++..+.. .++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34568999999999999999999999999999999999873 368999999999999999999 9999999999999998
Q ss_pred CCCC
Q 014866 306 KTAI 309 (417)
Q Consensus 306 ~~~~ 309 (417)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 243
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=3.6e-15 Score=127.82 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=75.6
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
.+...++|||+|||.++++++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999998754 69999999999999999998 99999999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
+++..
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98654
No 244
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.1e-15 Score=119.73 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=73.2
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEcc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 304 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~ 304 (417)
.....++|||+|||+++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|+. ++..+.|++|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 345678899999999999999999999999999999999865 469999999999999999999 57789999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8654
No 245
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=123.72 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=72.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCce----EEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 400 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I----~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V 400 (417)
.+.++|||+|||..+++++|+++|++| |.| ..+++. .+.++|||||+|.+.++|.+|++ |||..+.|+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF-QEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH-HHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh-CCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 346899999999999999999999995 998 555554 56789999999999999999999 9999999999999
Q ss_pred eecCCCCCCC
Q 014866 401 SPSKTPVRPR 410 (417)
Q Consensus 401 ~~a~~~~~~~ 410 (417)
.|+++.....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9998875544
No 246
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.2e-15 Score=119.00 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=71.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
...++|||+|||..+++++|+++|+.| + .+.++.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS-V---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC-S---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC-e---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456899999999999999999999984 5 45566654 6889999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 014866 403 SKTPVRPR 410 (417)
Q Consensus 403 a~~~~~~~ 410 (417)
+++.....
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 99876544
No 247
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=6.7e-16 Score=117.86 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=68.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
+|||+|||..+++++|+++|++| |.|..+.++++. +.++|||||+|.+.++|.+|+++++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF-GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH-SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 58999999999999999999995 999999999875 68899999999999999999999999999999999886
No 248
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=119.17 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccC--CcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG--FYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~--g~~l~V~~ 304 (417)
....++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++ |||..+. |++|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 345689999999999999999999999999999999865 5899999999999999998 9999999 99999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
++.
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 249
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.8e-15 Score=121.34 Aligned_cols=75 Identities=24% Similarity=0.247 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
+...++|||+|||.++++++|+++|++||.|.+|++.. ++|||||+|.+.++|.+|+. |||..++|+.|+|.+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34568999999999999999999999999999999984 45899999999999999998 99999999999999975
No 250
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=117.06 Aligned_cols=73 Identities=23% Similarity=0.386 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
++|||+|||+++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ ++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4699999999999999999999999999999999874 469999999999999999999 77 8999999999875
No 251
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=3.4e-15 Score=122.96 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=70.5
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
..+...++|||+|||.++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|+...+..+.|+.|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 3445678999999999999999999999999999999999874 47999999999999999999955689999999999
Q ss_pred cCCC
Q 014866 304 PSKT 307 (417)
Q Consensus 304 ~s~~ 307 (417)
++..
T Consensus 100 ~a~~ 103 (109)
T 2rs2_A 100 VAFP 103 (109)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9853
No 252
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=123.01 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
+...++|||+|||+++|+++|+++|++||. .+|+|+.++. .++|||||+|.+.++|.+||++|+..|+|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 346689999999999999999999999995 4999998874 46999999999999999999999999999999999875
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 253
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.6e-15 Score=130.10 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
....++|||+|||+++|+++|+++|++||. |.+|+|+.++. .++|||||+|.+.++|.+|+++|+..|+|+.|.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 456789999999999999999999999999 89999998875 47999999999999999999999999999999999
Q ss_pred cCC
Q 014866 304 PSK 306 (417)
Q Consensus 304 ~s~ 306 (417)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 863
No 254
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=1.7e-15 Score=125.32 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
+....+|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|++|++ |||..+.|++|.|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44567999999999999999999999999 9999998643 367999999999999999998 9999999999999997
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 5
No 255
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=3.8e-16 Score=134.38 Aligned_cols=125 Identities=17% Similarity=0.092 Sum_probs=74.2
Q ss_pred ceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCCHHHHHHHH
Q 014866 271 LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFF 349 (417)
Q Consensus 271 kG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~dL~~~F 349 (417)
+|+||.+|..++.+..++. +.. ..+|...--... ...........++|||+|||+++|+++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMAS-MTGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CCcccccccCccccchhcccchh-ccCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3678888888777776665 322 223322210000 00011122345899999999999999999999
Q ss_pred hhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCCCCC
Q 014866 350 ESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR 410 (417)
Q Consensus 350 ~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~~~~~ 410 (417)
++ || |..|.|++|. +.++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++.++....
T Consensus 68 ~~-~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~~ 127 (139)
T 2hgn_A 68 SP-LN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASN 127 (139)
T ss_dssp CS-CC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC--
T ss_pred Hh-cC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCCC
Confidence 99 59 6799999887 789999999999999999999999999999999999998776543
No 256
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=3.1e-15 Score=125.68 Aligned_cols=80 Identities=31% Similarity=0.519 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
...++|||+|||.++|+++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++|||..|.|+.|.|.+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 3568999999999999999999999999999999999754 46999999999999999999999999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 257
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=123.59 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCC---CCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP---NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~ 304 (417)
....++|||+|||.++++++|+++|+.|| |.+|+++.++ +.++|||||+|.+.++|.+|+.|+|..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45678999999999999999999999999 9999999986 2469999999999999999999999999999999999
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
++
T Consensus 95 a~ 96 (100)
T 2j76_E 95 AD 96 (100)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 258
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=3.5e-15 Score=125.70 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++|+++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999998864 468999999999999999998 999999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
+...
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8643
No 259
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=120.02 Aligned_cols=76 Identities=25% Similarity=0.266 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++ |+|..+.|++|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 456789999999999999999999999999999999865 4799999999999999998 99999999999999986
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 260
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.3e-15 Score=122.21 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=70.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|++ ++|||||+|.+.++|.+|++ |||..+.|++|.|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3589999999999999999999999 59999999875 56799999999999999999 999999999999999977
Q ss_pred CCC
Q 014866 406 PVR 408 (417)
Q Consensus 406 ~~~ 408 (417)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 544
No 261
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=6.3e-16 Score=122.40 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
++|||+|||.++++++|+++|++||.|.+|.++.++. .++|||||+|.+.+ |.+|+. |||..+.|++|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999999875 46999999999999 999999 9999999999999998643
No 262
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.4e-15 Score=120.79 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCC-eeEEEEe-cCCC--CCceEEEEEecCHHHHHHHHH-hc--CcccCCcceE
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRIC-GDPN--SVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVR 301 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~-~d~~--~skG~aFV~F~~~e~A~~Al~-ln--g~~i~g~~l~ 301 (417)
...++|||+|||+++|+++|+++|+.||. |.+|.++ .+.. .++|||||+|.+.++|.+|+. |+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 5655 479999999999999999998 86 5899999999
Q ss_pred EccCCCC
Q 014866 302 VLPSKTA 308 (417)
Q Consensus 302 V~~s~~~ 308 (417)
|.+++..
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998654
No 263
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.4e-15 Score=119.74 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=71.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
.+.++|||+|||..+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ |||..+.|++|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34589999999999999999999999 599999999865 6799999999999999998 99999999999999998
Q ss_pred CCCC
Q 014866 405 TPVR 408 (417)
Q Consensus 405 ~~~~ 408 (417)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 264
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.5e-15 Score=121.36 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
..++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 458999999999999999999999999999888887655 368999999999999999998 99999999999999874
No 265
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.5e-15 Score=130.24 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=73.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCc---eEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~---I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
...+|||+|||+++|+++|+++|++ ||. |..|+|+++. ++++|||||+|.+.++|.+|++|||..|+|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 3489999999999999999999999 599 8999999886 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
+.+.
T Consensus 122 a~~~ 125 (136)
T 2hgl_A 122 SHRT 125 (136)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8643
No 266
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.6e-15 Score=122.68 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
..++|||+|||+++|+++|+++|+.||.|..|+++.++. .++|||||+|.+.++|.+|+..++..|.|+.|.|.++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 457999999999999999999999999999999999865 368999999999999999998899999999999999864
Q ss_pred C
Q 014866 308 A 308 (417)
Q Consensus 308 ~ 308 (417)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 267
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=8.4e-16 Score=117.29 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
+|||+|||+++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999998865 4699999999999999999998999999999998764
No 268
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.6e-15 Score=116.77 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++++++|+++|+.| .|.+|+++.+.. .++|||||+|.+.++|.+|+.|||..++|++|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 3467899999999999999999999999 999999999843 46999999999999999999999999999999999975
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 3
No 269
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=9e-16 Score=124.24 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=72.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++| |.|.. .++.+. +.++|||||+|.+.++|.+|++|||..+.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISEL-FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH-HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45899999999999999999999995 99888 555553 688999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014866 405 TPVRP 409 (417)
Q Consensus 405 ~~~~~ 409 (417)
+....
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76543
No 270
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=124.31 Aligned_cols=77 Identities=29% Similarity=0.435 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
..++|||+|||.++++++|+++|+.||.|..|+++.++. .++|||||+|.+.++|.+|+.|||..|.|+.|.|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999999875 36899999999999999999999999999999999874
No 271
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=121.47 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE-EEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
....++|||+|||+++|+++|+++|++||.|.. |.|+.+.. .++|||||+|.+.++|.+|+..++..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 346789999999999999999999999999987 88888743 4799999999999999999998999999999999887
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 53
No 272
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-15 Score=125.67 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCe-eEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++. .++|||||+|.+.++|.+||++|+..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 4567899999999999999999999999999 8999999874 3699999999999999999999999999999999997
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 273
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=2.1e-15 Score=126.01 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. .++|||||+|.+.++|.+|+++|+..|+|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 346789999999999999999999999998 89999998775 46999999999999999999999999999999998
Q ss_pred cCC
Q 014866 304 PSK 306 (417)
Q Consensus 304 ~s~ 306 (417)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 274
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=120.98 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3567899999999999999999999999998887777654 368999999999999999997 9999999999999997
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 275
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=3.2e-15 Score=121.18 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=73.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|||..+++++|+++|++ ||.|.+|.++.+. +.++|||||+|.+.++|.+|++ +|..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 4589999999999999999999999 5999999999987 7789999999999999999999 99999999999999975
Q ss_pred CCC
Q 014866 406 PVR 408 (417)
Q Consensus 406 ~~~ 408 (417)
...
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 276
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=6.8e-15 Score=120.98 Aligned_cols=76 Identities=28% Similarity=0.458 Sum_probs=69.8
Q ss_pred ccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 226 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 226 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
......++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+. |||..+.|++|.|.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344577899999999999999999999999999999998 5899999999999999998 999999999999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
++.
T Consensus 100 a~~ 102 (108)
T 2jvo_A 100 SKL 102 (108)
T ss_dssp CSC
T ss_pred ecC
Confidence 864
No 277
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.9e-15 Score=121.00 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=72.0
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCccc--------C
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTML--------G 296 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i--------~ 296 (417)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++ |||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 345678999999999999999999999999999999999874 368999999999999999998 999999 5
Q ss_pred CcceEEccCC
Q 014866 297 FYPVRVLPSK 306 (417)
Q Consensus 297 g~~l~V~~s~ 306 (417)
+++|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 7778888875
No 278
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=118.06 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++ |||..+.|++|.|.+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34578999999999999999999999999997 666654 467999999999999999998 99999999999999985
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 279
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=5.1e-15 Score=125.38 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
...++|||+|||+.+++++|+ ++|++||.|.+|.+..+ ..++|||||+|.+.++|..|+. |||..+.|++|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 457899999999999999876 69999999999988653 3578999999999999999998 99999999999999
Q ss_pred cCCC
Q 014866 304 PSKT 307 (417)
Q Consensus 304 ~s~~ 307 (417)
+++.
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9853
No 280
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=119.28 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCC-----cceEE
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF-----YPVRV 302 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g-----~~l~V 302 (417)
...++|||+|||+++|+++|+++|++||.|..|.++.+ |||||+|.+.++|.+|++ |||..|.| ++|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 35689999999999999999999999999999999987 799999999999999999 99999999 99999
Q ss_pred ccCCCC
Q 014866 303 LPSKTA 308 (417)
Q Consensus 303 ~~s~~~ 308 (417)
.++...
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 998653
No 281
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.1e-15 Score=122.30 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
..++|||+|||+++++++|+++|++||.|..|.++. ++|||||+|.+.++|.+|+. |||..+.|++|.|.++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 457899999999999999999999999999999875 45899999999999999998 9999999999999998654
No 282
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=8.6e-15 Score=117.92 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=68.9
Q ss_pred cCCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 227 EEIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
.....++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+. |||..+.|++|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345678999999998 99999999999999999999994 5899999999999999999 999999999999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
++.
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 283
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=6.8e-15 Score=128.75 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||.++|+++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|.+|++ ||+..|.|++|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999998753 68999999999999999999 999999999999999
Q ss_pred CCC
Q 014866 305 SKT 307 (417)
Q Consensus 305 s~~ 307 (417)
++.
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
No 284
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=115.88 Aligned_cols=76 Identities=29% Similarity=0.383 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
...++|||+|||+++|+++|+++|++||.|.+| +.++.+.+ ||||+|.+.++|.+|++|||..+.|+.|.|.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 456799999999999999999999999999987 44554444 99999999999999999999999999999998754
No 285
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=125.11 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=73.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCc---eEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 402 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~---I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~ 402 (417)
...+|||+|||+.+|+++|+++|++ ||. |..|.|+.+. |.++|||||+|.+.++|.+|+++||..++|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 3589999999999999999999999 598 8999999887 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 014866 403 SKTP 406 (417)
Q Consensus 403 a~~~ 406 (417)
+.+.
T Consensus 89 a~~~ 92 (107)
T 2lmi_A 89 INNE 92 (107)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8753
No 286
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=128.22 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE--EEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCc----ccCCc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--CRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGT----MLGFY 298 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~----~i~g~ 298 (417)
....++|||+|||+++|+++|+++|++||.|.. |+|++|+. .++|||||+|.+. +|.+|+. |||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999977 99999884 4799999999999 9999998 9999 99999
Q ss_pred ceEEccCCCC
Q 014866 299 PVRVLPSKTA 308 (417)
Q Consensus 299 ~l~V~~s~~~ 308 (417)
+|.|.+++..
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998653
No 287
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.5e-15 Score=121.82 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
..+|||+|||+++|+++|+++|+.| .|.+|+|+.++. .++|||||+|.+.++|.+|+.+|+..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999998875 47999999999999999999999999999999998864
No 288
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=115.06 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+. |||..+.|+.|.|.+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45678999999999999999999999999999999984 499999999999999998 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 289
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=126.04 Aligned_cols=78 Identities=29% Similarity=0.405 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
....++|||+|||.++++++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999998864 469999999999999999998 999999999999987
Q ss_pred C
Q 014866 305 S 305 (417)
Q Consensus 305 s 305 (417)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 290
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=128.13 Aligned_cols=82 Identities=24% Similarity=0.308 Sum_probs=70.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEE--------EEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL--------RLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 397 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v--------~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~ 397 (417)
+.++|||+|||..+|+++|+++|++ ||.|..+ .+. ..+.++|||||+|.+.++|.+|+. |||..|.|+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4589999999999999999999999 5988764 222 237889999999999999999999 9999999999
Q ss_pred eEEeecCCCCCCC
Q 014866 398 IRVSPSKTPVRPR 410 (417)
Q Consensus 398 l~V~~a~~~~~~~ 410 (417)
|.|.|+++...+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998764433
No 291
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.9e-15 Score=115.84 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|++||.|.+|.+++ +||||+|.+.++|.+|++ |||..+.|++|.|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 45678999999999999999999999999999999984 499999999999999998 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 292
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=8.1e-15 Score=115.71 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=68.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~ 406 (417)
.++|||+|||..+++++|+++|++ | .|.++.+. .++|||||+|.+.++|.+|++ |||..++|++|+|.|+...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 479999999999999999999999 6 89999885 578899999999999999999 9999999999999999765
Q ss_pred C
Q 014866 407 V 407 (417)
Q Consensus 407 ~ 407 (417)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 4
No 293
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.1e-14 Score=114.34 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=69.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 405 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~ 405 (417)
..++|||+|+ .+++++|+++|++ ||.|.+|.+. .++|||||+|.+.++|.+|++ |||..+.|++|+|.|+++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4589999996 8999999999999 5999999995 467799999999999999998 999999999999999987
Q ss_pred CCCC
Q 014866 406 PVRP 409 (417)
Q Consensus 406 ~~~~ 409 (417)
....
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 294
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=4.4e-15 Score=122.77 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=71.0
Q ss_pred ccccceEEEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hC--CceeCCeeeEE
Q 014866 325 EMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRV 400 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~-~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-ln--g~~l~G~~l~V 400 (417)
..+.++|||+|||.+ +++++|+++|++ ||.|.+|.|.+ ++|||||+|.+.++|.+|++ || +..|.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 999999999999 59999999975 46799999999999999998 75 56799999999
Q ss_pred eecCCCCCCC
Q 014866 401 SPSKTPVRPR 410 (417)
Q Consensus 401 ~~a~~~~~~~ 410 (417)
.|++......
T Consensus 97 ~~a~~~~~~~ 106 (112)
T 1x4f_A 97 DLSEKYKKLV 106 (112)
T ss_dssp EEECSCSSSS
T ss_pred EECccccccc
Confidence 9998765443
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.3e-15 Score=117.59 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
....++|||+|||+ ++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34678999999998 99999999999999999999995 5899999999999999998 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 643
No 296
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.3e-15 Score=125.78 Aligned_cols=79 Identities=22% Similarity=0.174 Sum_probs=70.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~ 404 (417)
...+|||+|||+.+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++|||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 4589999999999999999999999 5999885544433 788999999999999999999999999999999999986
Q ss_pred CC
Q 014866 405 TP 406 (417)
Q Consensus 405 ~~ 406 (417)
+.
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 297
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=6.4e-15 Score=137.42 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=72.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCC--ceEEEEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G--~I~~v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
..++|||+|||..+|+++|+++|++ || .|.+|+|++|. +.++|||||+|.+.++|.+||+ |||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 3579999999999999999999999 59 99999999985 7899999999999999999999 99999999999999
Q ss_pred ecCCC
Q 014866 402 PSKTP 406 (417)
Q Consensus 402 ~a~~~ 406 (417)
++++.
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98643
No 298
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=123.00 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
....++|||+|||+++|+++|+++|+.||. |.+|+++.++. .++|||||+|.+.++|.+|+.+++..++|+.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 456789999999999999999999999988 89999998875 47999999999999999999999999999999999
Q ss_pred cCC
Q 014866 304 PSK 306 (417)
Q Consensus 304 ~s~ 306 (417)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 299
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=2.5e-14 Score=121.13 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=69.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeeEEeec
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN-CSGVVLGS--LPIRVSPS 403 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~-aFV~F~~~e~A~~Al~-lng~~l~G--~~l~V~~a 403 (417)
...|||+||++.+|+++|+++|++ ||.|.+|.+..+ .+|| |||+|.+.++|.+|++ |||..|.| ++|+|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 367889999999999999999999 599999998764 3677 9999999999999999 99999988 99999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8763
No 300
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4e-14 Score=113.03 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=67.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~ 406 (417)
..++|||+|||..+++++|+++|++ ||.|.+| +.+....+ ||||+|.+.++|.+|++|||..|+|+.|.|.++.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 3479999999999999999999999 5999998 33332223 999999999999999999999999999999999765
Q ss_pred CC
Q 014866 407 VR 408 (417)
Q Consensus 407 ~~ 408 (417)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 301
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=5.3e-15 Score=125.01 Aligned_cols=77 Identities=23% Similarity=0.180 Sum_probs=70.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceE--EEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVY--RLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~--~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
...+|||+|||+++|+++|+++|++ |+ |. .|+|+.|. |+++|||||+|.+.++|.+|+++++..|+|+.|.|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~-~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSG-LE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTT-SC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 3578999999999999999999999 55 66 89999886 78999999999999999999998889999999999988
Q ss_pred CC
Q 014866 404 KT 405 (417)
Q Consensus 404 ~~ 405 (417)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 302
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=116.95 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
+...++|||+|||+++|+++|+++|++||.| +++.+. ..++|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567999999999999999999999999977 555553 3478999999999999999999 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 303
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=4e-15 Score=119.30 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
....++|||+|||.++++++|+ ++|++||.|.+|.+... ..++|||||+|.+.++|.+|+. |||..+.|++|.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467899999999999999999 99999999999998742 2357999999999999999998 9999999999999
Q ss_pred ccCCC
Q 014866 303 LPSKT 307 (417)
Q Consensus 303 ~~s~~ 307 (417)
.+++.
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99854
No 304
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=114.89 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=70.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEE-EeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~-i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++| |.|.+|+ ++.+.. .|.|||+|.+.++|.+|+. |||..++|++|+|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35899999999999999999999995 9999994 877754 3349999999999999999 99999999999999998
Q ss_pred CCC
Q 014866 405 TPV 407 (417)
Q Consensus 405 ~~~ 407 (417)
+..
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
No 305
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=1.4e-14 Score=117.79 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~ 307 (417)
...++|||+|||+++|+++|+++|++||.|..|.+++ |||||+|.+.++|.+|++ ||+..+.|++|.|.+++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4568899999999999999999999999999999873 699999999999999999 999999999999999865
Q ss_pred C
Q 014866 308 A 308 (417)
Q Consensus 308 ~ 308 (417)
.
T Consensus 83 ~ 83 (103)
T 2dgu_A 83 P 83 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 306
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=4.8e-16 Score=129.24 Aligned_cols=82 Identities=26% Similarity=0.280 Sum_probs=75.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEE--------EEEeccC--CCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS 395 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~--------v~i~~d~--~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G 395 (417)
+.++|||+|||..+++++|+++|++ ||.|.. |.++.+. +.++|||||+|.+.++|.+|++ |||..+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 4589999999999999999999999 599999 8888875 6889999999999999999999 99999999
Q ss_pred eeeEEeecCCCCCC
Q 014866 396 LPIRVSPSKTPVRP 409 (417)
Q Consensus 396 ~~l~V~~a~~~~~~ 409 (417)
++|+|.|+++....
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876543
No 307
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.8e-15 Score=122.05 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc--CcccCCcceEEc
Q 014866 228 EIIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVL 303 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-ln--g~~i~g~~l~V~ 303 (417)
....++|||+|||++ +++++|+++|++||.|.+|++++. +|||||+|.+.++|..|++ |+ +..+.|++|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 446789999999998 999999999999999999999854 5899999999999999998 76 456999999999
Q ss_pred cCCC
Q 014866 304 PSKT 307 (417)
Q Consensus 304 ~s~~ 307 (417)
+++.
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9854
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.4e-15 Score=124.50 Aligned_cols=79 Identities=22% Similarity=0.140 Sum_probs=71.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCce----EEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 400 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I----~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V 400 (417)
....+|||+|||+++|+++|+++|++ ||.| ..|.|+.+. |+++|||||+|.+.++|.+|++.|+..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 34589999999999999999999999 5875 689998876 78999999999999999999999999999999999
Q ss_pred eecCC
Q 014866 401 SPSKT 405 (417)
Q Consensus 401 ~~a~~ 405 (417)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 309
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.7e-14 Score=113.68 Aligned_cols=74 Identities=26% Similarity=0.404 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC--CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+++|+++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+. |||..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467899999999999999999999999 999999875 4799999999999999999 9999999999999998
Q ss_pred CCC
Q 014866 306 KTA 308 (417)
Q Consensus 306 ~~~ 308 (417)
+..
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 310
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=7.9e-14 Score=126.60 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=89.6
Q ss_pred CHHHHHHHHH-h--cCcccCCcceEEccCCCCCCCCCCCCCCCCch--hhccccceEEEeCCCCCCCHHHHHHHHhhcCC
Q 014866 280 DEEGARAALN-L--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTED--EREMCARTIYCTNIDKKVTQADVKLFFESVCG 354 (417)
Q Consensus 280 ~~e~A~~Al~-l--ng~~i~g~~l~V~~s~~~~~~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~te~dL~~~F~~f~G 354 (417)
+.+.+..|+. . ....+.+....|..... .+ .|.... ......++|||+|||..+++++|+++|++ ||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~--~p-----~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS--KP-----LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED-KG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT--SC-----CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT-SC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc--CC-----CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc-CC
Confidence 5567777777 4 34445555555544311 00 111111 12334689999999999999999999999 59
Q ss_pred ceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCCC
Q 014866 355 EVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 407 (417)
Q Consensus 355 ~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~~ 407 (417)
.|.+|+|+++. +.++|||||+|.+.++|.+|+.+.+..++|++|.|.|++.-.
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 99999999886 789999999999999999999954569999999999987643
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=3.1e-14 Score=112.81 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=62.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCC--ceeCCeeeEEeec
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSG--VVLGSLPIRVSPS 403 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng--~~l~G~~l~V~~a 403 (417)
.+..+|||+|||.++|+++|+++|++ ||.|.+|+|+++ ++|||||+|.+.++|.+ ++| ..+.|+.|.|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 34589999999999999999999999 599999999875 78999999999999983 344 4467999999999
Q ss_pred CCCC
Q 014866 404 KTPV 407 (417)
Q Consensus 404 ~~~~ 407 (417)
.+..
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8754
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=119.23 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCe----eEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
....++|||+|||.++|+++|+++|++||.| ..+++. ...++|||||+|.+.++|.+|++ |||..+.|++|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999998 555555 34568999999999999999998 9999999999999
Q ss_pred ccCCCC
Q 014866 303 LPSKTA 308 (417)
Q Consensus 303 ~~s~~~ 308 (417)
.++...
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998654
No 313
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.8e-15 Score=125.38 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s 305 (417)
....++|||+|||+++|+++|+++|+.||.|..+.++.+.. .++|||||+|.+.++|.+||.|||..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34668999999999999999999999999998855554433 4699999999999999999999999999999999987
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 314
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=1.8e-14 Score=118.56 Aligned_cols=73 Identities=22% Similarity=0.460 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
...++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34589999999999 999999999999999999999 45899999999999999997 99999999999999986
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 315
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=2.8e-14 Score=125.40 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=69.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC--eeeEEeecC
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS--LPIRVSPSK 404 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G--~~l~V~~a~ 404 (417)
..+|||+||++.+|+++|+++|++| |.|.+|.|..+. ++|||||+|.+.++|.+|++ |||..|.| ++|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3679999999999999999999995 999999997543 57899999999999999999 99999965 999999998
Q ss_pred CCC
Q 014866 405 TPV 407 (417)
Q Consensus 405 ~~~ 407 (417)
+..
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 763
No 316
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=1.5e-14 Score=129.60 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=76.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
..++|||+|||..+++++|+++|++ ||.|..|.|..+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4689999999999999999999999 5999999999987 7889999999999999999999 99999999999999998
Q ss_pred CCCCC
Q 014866 405 TPVRP 409 (417)
Q Consensus 405 ~~~~~ 409 (417)
+....
T Consensus 166 ~~~~~ 170 (177)
T 2f3j_A 166 SQIDL 170 (177)
T ss_dssp SGGGG
T ss_pred CCCCC
Confidence 76543
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=1.4e-14 Score=135.07 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEcc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 304 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~ 304 (417)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+. .++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999875 469999999999999999999 999999999999999
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 318
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.3e-14 Score=126.65 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 305 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s 305 (417)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|.+||. |||..|.|++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999998653 68999999999999999998 9999999999999998
Q ss_pred CC
Q 014866 306 KT 307 (417)
Q Consensus 306 ~~ 307 (417)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 319
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=1.3e-14 Score=114.47 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
..++|||+|||+++++++|+++|++| .|.+|++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 46789999999999999999999999 99999985 467999999999999999999 9999999999999998543
No 320
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.52 E-value=1.1e-14 Score=123.07 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCee--EEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--DCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~ 304 (417)
....++|||+|||+++|+++|+++|+.| .|. +|+|+.|+. .++|||||+|.+.++|.+|+++++..|+|+.|.|.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 3467889999999999999999999999 677 899998775 479999999999999999999888999999999987
Q ss_pred CC
Q 014866 305 SK 306 (417)
Q Consensus 305 s~ 306 (417)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 63
No 321
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=122.79 Aligned_cols=78 Identities=22% Similarity=0.186 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCe----eEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
....+|||+|||+++|+++|+++|++||.| ..|+|+.+.. .++|||||+|.+.++|.+|++.|+..|+|+.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999975 6899998754 46999999999999999999989999999999988
Q ss_pred cCC
Q 014866 304 PSK 306 (417)
Q Consensus 304 ~s~ 306 (417)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 763
No 322
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=9.6e-15 Score=116.94 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++++++|+++|+.||.|..+ .....++|||||+|.+.++|.+|+. |+|..+.|++|.|.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3456899999999999999999999999988766 3334578999999999999999999 99999999999999985
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 90 ~ 90 (96)
T 1fjc_A 90 E 90 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 323
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=115.85 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCC-eeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC-cccCCcceEEcc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG-TMLGFYPVRVLP 304 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng-~~i~g~~l~V~~ 304 (417)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++ ||| ..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 346688999999999999999999999999 6666663 35899999999999999998 999 999999999999
Q ss_pred CCCC
Q 014866 305 SKTA 308 (417)
Q Consensus 305 s~~~ 308 (417)
++..
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8643
No 324
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=7.6e-14 Score=114.20 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=70.1
Q ss_pred cccceEEEeCCCC-----CCCHHHHHHHHhhcCCceEEEEEeccC---CCCceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 014866 326 MCARTIYCTNIDK-----KVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL 396 (417)
Q Consensus 326 ~~~~~l~V~nLp~-----~~te~dL~~~F~~f~G~I~~v~i~~d~---~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~ 396 (417)
.++++|+|+||.. .-++++|+++|++ ||.|.+|.|++++ +.++|||||+|.+.++|.+|++ |||..++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4568999999963 2378999999999 5999999999875 4789999999999999999999 999999999
Q ss_pred eeEEeecCC
Q 014866 397 PIRVSPSKT 405 (417)
Q Consensus 397 ~l~V~~a~~ 405 (417)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 325
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.2e-14 Score=112.03 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=65.2
Q ss_pred ceEEEeCCCCCCCHHH----HHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEee
Q 014866 329 RTIYCTNIDKKVTQAD----VKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 402 (417)
Q Consensus 329 ~~l~V~nLp~~~te~d----L~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~ 402 (417)
+.|||+|||..+++++ |+++|++ || .|.+|. .|+|||.|.+.++|.+|++ |||..+.||+|+|.|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999988 5589999 75 999991 2899999999999999998 999999999999999
Q ss_pred cCCCCCCCC
Q 014866 403 SKTPVRPRA 411 (417)
Q Consensus 403 a~~~~~~~~ 411 (417)
|+....--.
T Consensus 81 A~~~sd~~~ 89 (96)
T 2diu_A 81 TPKNRELCE 89 (96)
T ss_dssp SCCSCCCCC
T ss_pred cCCCcceeE
Confidence 998765443
No 326
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=3.8e-15 Score=120.54 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
...++|||+|||+++|+++|+++|+.||.|.. .++.+.. .++|||||+|.+.++|.+|++|||..+.|+.|.|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45789999999999999999999999999887 5555443 47899999999999999999999999999999999985
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 94 ~ 94 (101)
T 1fj7_A 94 G 94 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 327
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.3e-14 Score=117.04 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=69.5
Q ss_pred cccceEEE--eCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCcee-----CCee
Q 014866 326 MCARTIYC--TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL-----GSLP 397 (417)
Q Consensus 326 ~~~~~l~V--~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l-----~G~~ 397 (417)
.++++||| +||+..+++++|+++|++| |.|.+|.++.+ +|||||+|.+.++|.+|++ |||..+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f-G~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC-GLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH-SCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc-CCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 34689999 6699999999999999995 99999998753 6799999999999999999 999998 7999
Q ss_pred eEEeecCCCCC
Q 014866 398 IRVSPSKTPVR 408 (417)
Q Consensus 398 l~V~~a~~~~~ 408 (417)
|.|.|++.-+-
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999986543
No 328
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=6.1e-15 Score=126.84 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|||+++|+++|+++|++|| |.+|+|+.++. .++|||||+|.+.++|.+||++|+..|+|+.|.|..+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34667899999999999999999999999 77999998875 47999999999999999999999999999999998875
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 329
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=113.54 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEE-EecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-ICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~-i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
...++|||+|||+++++++|+++|++||.|.+|+ ++.++.+ |.|||+|.+.++|.+|+. |||..+.|++|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3568899999999999999999999999999994 7777654 459999999999999998 99999999999999985
Q ss_pred C
Q 014866 307 T 307 (417)
Q Consensus 307 ~ 307 (417)
.
T Consensus 91 ~ 91 (96)
T 2e44_A 91 D 91 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 330
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=7e-14 Score=109.57 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=65.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcC----C-------ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVC----G-------EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 395 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~----G-------~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G 395 (417)
..++|||+|||..+++++|+++|++ | | .|.++.+.++ +|||||+|.+.++|.+|+.|||..+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 3589999999999999999999999 7 7 8999999765 679999999999999999999999999
Q ss_pred eeeEEee
Q 014866 396 LPIRVSP 402 (417)
Q Consensus 396 ~~l~V~~ 402 (417)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 331
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.50 E-value=4e-14 Score=112.23 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=62.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcc--cCCcceEEccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTM--LGFYPVRVLPS 305 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~--i~g~~l~V~~s 305 (417)
.....+|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 346789999999999999999999999999999999885 67999999999999884 45554 46999999987
Q ss_pred C
Q 014866 306 K 306 (417)
Q Consensus 306 ~ 306 (417)
.
T Consensus 82 ~ 82 (89)
T 3d2w_A 82 E 82 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 332
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-14 Score=119.41 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=67.1
Q ss_pred CCCcEEEE--cCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCccc-----CCcce
Q 014866 229 IIRRTVYV--SDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML-----GFYPV 300 (417)
Q Consensus 229 ~~~~~lfV--~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i-----~g~~l 300 (417)
...++||| |||++++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++ |||..+ .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 45788999 789999999999999999999999988753 6899999999999999998 999988 68899
Q ss_pred EEccCC
Q 014866 301 RVLPSK 306 (417)
Q Consensus 301 ~V~~s~ 306 (417)
.|.++.
T Consensus 99 ~v~~a~ 104 (114)
T 2cq2_A 99 YLNFVE 104 (114)
T ss_dssp EEEEES
T ss_pred EEEecc
Confidence 999875
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=7.4e-14 Score=117.55 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=66.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeeEEeecC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN-CSGVVLGS--LPIRVSPSK 404 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~-aFV~F~~~e~A~~Al~-lng~~l~G--~~l~V~~a~ 404 (417)
..|||+||++.+++++|+++|++ ||.|.+|.|... .|| |||+|.+.++|..|++ |||..|.| +.|+|.||+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999 599999999753 376 9999999999999999 99999987 699999998
Q ss_pred CCC
Q 014866 405 TPV 407 (417)
Q Consensus 405 ~~~ 407 (417)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 774
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=110.82 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
....++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+. |||..+.|++|.|.++.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 446789999996 89999999999999999999995 356899999999999999997 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=3.9e-14 Score=117.71 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=66.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCee-----eEEe
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP-----IRVS 401 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~-----l~V~ 401 (417)
..+|||+|||..+++++|+++|++ ||.|..|.|+.+ |||||+|.+.++|.+|++ |||..|+|+. |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 489999999999999999999999 599999999876 799999999999999999 9999999998 8888
Q ss_pred ecCCCCC
Q 014866 402 PSKTPVR 408 (417)
Q Consensus 402 ~a~~~~~ 408 (417)
.+.+...
T Consensus 90 ~~~~~~~ 96 (115)
T 3beg_B 90 VDGPRSP 96 (115)
T ss_dssp ECC----
T ss_pred cCCCCCC
Confidence 8766543
No 336
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-15 Score=125.85 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeE--------EEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLG 296 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~ 296 (417)
....++|||+|||.++++++|+++|++||.|.. |+++.++. .++|||||+|.+.++|.+|+. |||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 88988764 468999999999999999998 9999999
Q ss_pred CcceEEccCCC
Q 014866 297 FYPVRVLPSKT 307 (417)
Q Consensus 297 g~~l~V~~s~~ 307 (417)
|++|.|.+++.
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999864
No 337
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=111.77 Aligned_cols=79 Identities=14% Similarity=0.280 Sum_probs=67.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeecCCC
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 406 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a~~~ 406 (417)
..++|||+|||..+++++|+++|++ ||.|.+|.++.+ ++|||||+|.+.++|++|+.. +..+.|++|.|.++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 3589999999999999999999999 599999999875 688999999999999764332 35669999999999877
Q ss_pred CCCC
Q 014866 407 VRPR 410 (417)
Q Consensus 407 ~~~~ 410 (417)
....
T Consensus 79 ~~~~ 82 (88)
T 1wf0_A 79 HNSN 82 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 338
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=7.1e-14 Score=122.82 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCC--cceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g--~~l~V~~s~ 306 (417)
.-.+|||+||++.+|+++|+++|++||.|.+|.+..+. ++|||||+|.+.++|..|++ |||..|.| ++|+|.+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34569999999999999999999999999999997543 56899999999999999998 99999965 999999987
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 339
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=123.54 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEE--------EEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCc
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC--------RICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY 298 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v--------~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~ 298 (417)
....++|||+|||+++|+++|+++|+.||.|..| ++.. ...++|||||+|.+.++|.+|+. |||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3467899999999999999999999999998764 3322 34578999999999999999999 999999999
Q ss_pred ceEEccCCCC
Q 014866 299 PVRVLPSKTA 308 (417)
Q Consensus 299 ~l~V~~s~~~ 308 (417)
+|.|.+++..
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998643
No 340
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.6e-14 Score=113.29 Aligned_cols=79 Identities=28% Similarity=0.367 Sum_probs=69.5
Q ss_pred cCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 227 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~--~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
.....++|||+|||+++|+++|+++|+.|+ .|.++.++. .++|||||+|.+.++|.+|++ |||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999874 677777654 468999999999999999998 99999999999999
Q ss_pred cCCCC
Q 014866 304 PSKTA 308 (417)
Q Consensus 304 ~s~~~ 308 (417)
+++..
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98643
No 341
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=2e-14 Score=116.44 Aligned_cols=76 Identities=18% Similarity=0.369 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~ 306 (417)
..++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 457899999999999999999999999999999999873 368999999999999999999 9999999999998874
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=3.7e-14 Score=111.21 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 298 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~ 298 (417)
..++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+.|||..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 46899999999999999999999999 8 9999999866 5899999999999999999999999999
Q ss_pred ceEEcc
Q 014866 299 PVRVLP 304 (417)
Q Consensus 299 ~l~V~~ 304 (417)
+|+|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999875
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=5.9e-14 Score=116.60 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcc-----eEEc
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYP-----VRVL 303 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~-----l~V~ 303 (417)
...+|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+ |||..|.|+. |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4578999999999999999999999999999999877 799999999999999999 9999999998 6666
Q ss_pred cCC
Q 014866 304 PSK 306 (417)
Q Consensus 304 ~s~ 306 (417)
.+.
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 654
No 344
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=6e-14 Score=125.64 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
...++|||+|||+.+++++|+++|+.||.|..|.+..+.. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4568999999999999999999999999999999999873 468999999999999999998 99999999999999985
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 345
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.1e-13 Score=117.24 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceE-EEEEecCHHHHHHHHH-hcCcccCC--cceEEccCC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSK 306 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~-aFV~F~~~e~A~~Al~-lng~~i~g--~~l~V~~s~ 306 (417)
--.|||+||++.+|+++|+++|++||.|.+|.+..+. +|| |||+|.+.++|.+|++ |||..|.| ++|+|.+++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3468899999999999999999999999999988643 587 9999999999999998 99999987 899999987
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=8.4e-14 Score=116.86 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=69.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
...++|||+|+ .+++++|+++|++ ||.|.+|.+. .++|||||+|.+.++|.+|++ |||..+.|+.|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 34689999996 6999999999999 5999999996 467899999999999999998 99999999999999998
Q ss_pred CCCCCC
Q 014866 405 TPVRPR 410 (417)
Q Consensus 405 ~~~~~~ 410 (417)
+.....
T Consensus 110 ~~~~~~ 115 (121)
T 2bz2_A 110 KQPMLD 115 (121)
T ss_dssp SSCC--
T ss_pred CCCCCC
Confidence 775443
No 347
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=108.83 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCcE-EEEcCCCCCCcHHH----HHHHHhcC-CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 230 IRRT-VYVSDIDQQVTEEQ----LAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 230 ~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
+..+ |||+|||+.+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++ |+|..+.|++|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3455 99999999999988 55899999 5999981 1899999999999999998 9999999999999
Q ss_pred ccCCCC
Q 014866 303 LPSKTA 308 (417)
Q Consensus 303 ~~s~~~ 308 (417)
.+++..
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 998654
No 348
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=110.48 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCCC
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~~ 308 (417)
...++|||+|||+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|+.. +..+.|++|.|.++...
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 35689999999999999999999999999999999876 579999999999999764332 23458999999997543
No 349
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.4e-13 Score=114.38 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceE-EEEEecCHHHHHHHHH-hcCcccCC--cceEEccCCCC
Q 014866 233 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSKTA 308 (417)
Q Consensus 233 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~-aFV~F~~~e~A~~Al~-lng~~i~g--~~l~V~~s~~~ 308 (417)
.|||+||++.+|+++|+++|++||.|.+|.+... .|| |||+|.+.++|..|++ |||..|.| ++|+|.+++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4789999999999999999999999999999763 286 9999999999999998 99999987 68999998754
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=112.70 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=61.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEE
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 302 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V 302 (417)
...++|||+|||+++|+++|+++|++||.|. +.++.+.. .++|||||+|.+.++|.+|++ |+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578899999999999999999999999999 88877653 469999999999999999998 73 255555555
Q ss_pred cc
Q 014866 303 LP 304 (417)
Q Consensus 303 ~~ 304 (417)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 44
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=2.5e-13 Score=123.24 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCcccCCcceEEccCCC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 307 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~~s~~ 307 (417)
..++|||+|||+++|+++|+++|++||.|.+|+++++.. .++|||||+|.+.++|.+|+.+.+..+.|++|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 358999999999999999999999999999999998765 469999999999999999999555699999999998753
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=3e-13 Score=113.44 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
+...++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 456789999996 69999999999999999999996 356899999999999999997 99999999999999986
Q ss_pred CC
Q 014866 307 TA 308 (417)
Q Consensus 307 ~~ 308 (417)
..
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=9.2e-13 Score=108.76 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=68.9
Q ss_pred ccccceEEEeCCCCCCC-----------HHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCce
Q 014866 325 EMCARTIYCTNIDKKVT-----------QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVV 392 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~t-----------e~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~ 392 (417)
..++++|+|+||..... +++|+++|++ ||.|..|.| .+. .++|||||+|.+.++|.+|+. |||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34568999999954332 6899999999 599999966 444 379999999999999999998 99999
Q ss_pred eCCeeeEEeecCCCCC
Q 014866 393 LGSLPIRVSPSKTPVR 408 (417)
Q Consensus 393 l~G~~l~V~~a~~~~~ 408 (417)
++|++|+|.|+.+...
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999987544
No 354
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.4e-13 Score=113.82 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=66.6
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhcCCCeeEEEEecCCCC--CceEEEEEecC----HHH----HHHHHH---hcCcc
Q 014866 232 RTVYVSDI----DQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD----EEG----ARAALN---LAGTM 294 (417)
Q Consensus 232 ~~lfV~nL----p~~~te~~L~~~F~~~G~I~~v~i~~d~~~--skG~aFV~F~~----~e~----A~~Al~---lng~~ 294 (417)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.+ ++|||||+|.+ +++ |.+|+. +||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999999999986 69999999996 333 778875 69999
Q ss_pred cCCcceEEccCC
Q 014866 295 LGFYPVRVLPSK 306 (417)
Q Consensus 295 i~g~~l~V~~s~ 306 (417)
|+|++|+|...+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.6e-13 Score=110.91 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=59.6
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC-----CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEE
Q 014866 327 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 400 (417)
Q Consensus 327 ~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~-----~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V 400 (417)
..++|||+|||..+++++|+++|++ ||.|. +.++.+. |.++|||||+|.+.++|.+|++ |+ .++|+.|.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3589999999999999999999999 59999 8777765 4789999999999999999998 72 244444444
Q ss_pred ee
Q 014866 401 SP 402 (417)
Q Consensus 401 ~~ 402 (417)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 356
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.6e-13 Score=112.72 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=67.7
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHhhcCCceEEEEEeccC--CCCceEEEEEeCC----HHH----HHHHHH---hCCc
Q 014866 329 RTIYCTNI----DKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVM----AES----AIAALN---CSGV 391 (417)
Q Consensus 329 ~~l~V~nL----p~~~te~dL~~~F~~f~G~I~~v~i~~d~--~~~kG~aFV~F~~----~e~----A~~Al~---lng~ 391 (417)
..|||+|| |+.+++++|+++|++ ||+|.+|.++.|+ |.++|||||+|.+ +++ |.+|+. |||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999 5999999999998 7999999999996 333 788875 7999
Q ss_pred eeCCeeeEEeecCCC
Q 014866 392 VLGSLPIRVSPSKTP 406 (417)
Q Consensus 392 ~l~G~~l~V~~a~~~ 406 (417)
.|+|++|+|.+-+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986543
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=7.1e-13 Score=108.37 Aligned_cols=78 Identities=22% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHHhcCCCeeEEEEecCCC---CCceEEEEEecCHHHHHHHHH-hcCcccCCcc
Q 014866 229 IIRRTVYVSDIDQ-----QVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEEGARAALN-LAGTMLGFYP 299 (417)
Q Consensus 229 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~I~~v~i~~d~~---~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~ 299 (417)
..+++|+|+||.. +-++++|++.|++||.|.+|.|+.++. .++|||||+|.+.++|.+|++ |||..+.|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 236899999999999999999998763 469999999999999999998 9999999999
Q ss_pred eEEccCC
Q 014866 300 VRVLPSK 306 (417)
Q Consensus 300 l~V~~s~ 306 (417)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999974
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.7e-13 Score=125.71 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=68.4
Q ss_pred ccceEEEeCCCCCC---------CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCcee---
Q 014866 327 CARTIYCTNIDKKV---------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL--- 393 (417)
Q Consensus 327 ~~~~l~V~nLp~~~---------te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l--- 393 (417)
..++|||+||+..+ ++++|+++|++ ||.|.+|+|+.+ +|||||+|.+.++|+.|++ |+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 45899999999998 79999999999 599999999864 6799999999999999999 999999
Q ss_pred ---------CCeeeEEeecCCCCCCCCC
Q 014866 394 ---------GSLPIRVSPSKTPVRPRAP 412 (417)
Q Consensus 394 ---------~G~~l~V~~a~~~~~~~~~ 412 (417)
.|+.|.|.||+..+.|...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pnp~~~ 235 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPDPAAQ 235 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC--------
T ss_pred ccccccccCCCCEEEEEEccCCCCHHHh
Confidence 8999999999987766553
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=7.4e-13 Score=108.27 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=68.0
Q ss_pred ccceEEEeCC--CCCCC--------HHHHHHHHhhcCCceEEEEEeccC----CCCceEEEEEeCCHHHHHHHHH-hCCc
Q 014866 327 CARTIYCTNI--DKKVT--------QADVKLFFESVCGEVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN-CSGV 391 (417)
Q Consensus 327 ~~~~l~V~nL--p~~~t--------e~dL~~~F~~f~G~I~~v~i~~d~----~~~kG~aFV~F~~~e~A~~Al~-lng~ 391 (417)
+++.|.|.|+ |..+. ++||++.|++ ||.|.+|.|+++. +.++|+|||+|.+.++|.+|++ |||+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5689999998 33443 4799999999 5999999999876 2579999999999999999999 9999
Q ss_pred eeCCeeeEEeecCC
Q 014866 392 VLGSLPIRVSPSKT 405 (417)
Q Consensus 392 ~l~G~~l~V~~a~~ 405 (417)
.++||.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=8.1e-13 Score=123.37 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCccc--
Q 014866 228 EIIRRTVYVSDIDQQV---------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML-- 295 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i-- 295 (417)
....++|||||||..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|++ |+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3467899999999998 79999999999999999999864 5899999999999999998 999999
Q ss_pred ----------CCcceEEccCCCC
Q 014866 296 ----------GFYPVRVLPSKTA 308 (417)
Q Consensus 296 ----------~g~~l~V~~s~~~ 308 (417)
.|+.|.|.|++..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 8999999998643
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=4.1e-13 Score=109.62 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=60.2
Q ss_pred EeCCCCCCCHHHHHHHH------------hhcCCceEEEEEeccC-CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeee
Q 014866 333 CTNIDKKVTQADVKLFF------------ESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPI 398 (417)
Q Consensus 333 V~nLp~~~te~dL~~~F------------~~f~G~I~~v~i~~d~-~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l 398 (417)
+.|||..+++++|++.| ++ ||.|.+|.|+++. +.++|||||+|.+.++|.+|+. |||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555666776666555 99 5999999999886 6889999999999999999999 99999999999
Q ss_pred EEeec
Q 014866 399 RVSPS 403 (417)
Q Consensus 399 ~V~~a 403 (417)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=4.2e-12 Score=105.93 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=68.4
Q ss_pred cccceEEEeCCCC--CC---CHHHHHHHHhhcCCceEEEEEeccC------CCCceEEEEEeCCHHHHHHHHH-hCCcee
Q 014866 326 MCARTIYCTNIDK--KV---TQADVKLFFESVCGEVYRLRLLGDY------HHSTRIAFVEFVMAESAIAALN-CSGVVL 393 (417)
Q Consensus 326 ~~~~~l~V~nLp~--~~---te~dL~~~F~~f~G~I~~v~i~~d~------~~~kG~aFV~F~~~e~A~~Al~-lng~~l 393 (417)
.++++|+|+|+-. ++ .++||++.|++ ||.|.+|.|+++. +.++|+|||+|.+.++|.+|++ |||+.+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4678999999842 22 36899999999 5999999999874 2467999999999999999999 999999
Q ss_pred CCeeeEEeecCC
Q 014866 394 GSLPIRVSPSKT 405 (417)
Q Consensus 394 ~G~~l~V~~a~~ 405 (417)
+||.|.|.++..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999999753
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.3e-12 Score=104.68 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=67.7
Q ss_pred cCCCCcEEEEcCCCCCCc-----------HHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcc
Q 014866 227 EEIIRRTVYVSDIDQQVT-----------EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM 294 (417)
Q Consensus 227 ~~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~ 294 (417)
.+..+++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+. |||..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 345788999999954332 6899999999999999966 444 378999999999999999998 99999
Q ss_pred cCCcceEEccCCC
Q 014866 295 LGFYPVRVLPSKT 307 (417)
Q Consensus 295 i~g~~l~V~~s~~ 307 (417)
+.|++|.|.++..
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999999753
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.9e-11 Score=98.87 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecCCCCCCC
Q 014866 338 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR 410 (417)
Q Consensus 338 ~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~~~~~~~ 410 (417)
..+++++|+++|++ ||.|..|.|+ +.++|||||+|.+.++|.+|++ +++ +.|++|+|.|+++.....
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 46899999999999 5999999998 4678999999999999999999 666 689999999998775433
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=2e-12 Score=105.44 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=62.3
Q ss_pred EcCCCCCCcHHHHHHHH------------hcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCcccCCcceE
Q 014866 236 VSDIDQQVTEEQLAALF------------VGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 301 (417)
Q Consensus 236 V~nLp~~~te~~L~~~F------------~~~G~I~~v~i~~d~~-~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~ 301 (417)
+.|||..+++++|++.| ++||.|.+|.++++.. .++|||||+|.+.++|.+|+. |||..+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 66788888888887766 9999999999998765 479999999999999999998 999999999999
Q ss_pred EccC
Q 014866 302 VLPS 305 (417)
Q Consensus 302 V~~s 305 (417)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=9.5e-12 Score=101.61 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=67.0
Q ss_pred CCcEEEEcCC--CCCCc--------HHHHHHHHhcCCCeeEEEEecCCC----CCceEEEEEecCHHHHHHHHH-hcCcc
Q 014866 230 IRRTVYVSDI--DQQVT--------EEQLAALFVGCGQVVDCRICGDPN----SVLRFAFIEFTDEEGARAALN-LAGTM 294 (417)
Q Consensus 230 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~----~skG~aFV~F~~~e~A~~Al~-lng~~ 294 (417)
+++.|.+.|+ |.++. +++|++.|++||.|.+|.|+++.. .++|||||+|.+.++|.+|+. |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 43443 478999999999999999998764 368999999999999999998 99999
Q ss_pred cCCcceEEccCC
Q 014866 295 LGFYPVRVLPSK 306 (417)
Q Consensus 295 i~g~~l~V~~s~ 306 (417)
++|++|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999863
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.5e-11 Score=100.62 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=65.0
Q ss_pred ccceEEEeCCCCCC----------CHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 014866 327 CARTIYCTNIDKKV----------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 395 (417)
Q Consensus 327 ~~~~l~V~nLp~~~----------te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G 395 (417)
++++|.+.|+-..- .++||++.|++ ||.|.+|.|.++. ++|+|||+|.+.++|.+|++ |||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45889999984321 24689999999 5999999997764 58999999999999999999 99999999
Q ss_pred eeeEEeecCC
Q 014866 396 LPIRVSPSKT 405 (417)
Q Consensus 396 ~~l~V~~a~~ 405 (417)
|.|.|.|+..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999843
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.9e-11 Score=117.76 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=64.9
Q ss_pred ccccceEEEeC--CCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCcee---CCe--
Q 014866 325 EMCARTIYCTN--IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL---GSL-- 396 (417)
Q Consensus 325 ~~~~~~l~V~n--Lp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l---~G~-- 396 (417)
..++++|||+| |+..+|+++|+++|++ ||.|.+|.+.+ +||||||+|.+.++|++|++ |||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 34568999999 5789999999999999 59999998865 47899999999999999999 999988 344
Q ss_pred eeEEeecC
Q 014866 397 PIRVSPSK 404 (417)
Q Consensus 397 ~l~V~~a~ 404 (417)
.|.|.|++
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888875
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.17 E-value=5e-11 Score=99.41 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCcEEEEcCCC--CCC---cHHHHHHHHhcCCCeeEEEEecCCC------CCceEEEEEecCHHHHHHHHH-hcCcccCC
Q 014866 230 IRRTVYVSDID--QQV---TEEQLAALFVGCGQVVDCRICGDPN------SVLRFAFIEFTDEEGARAALN-LAGTMLGF 297 (417)
Q Consensus 230 ~~~~lfV~nLp--~~~---te~~L~~~F~~~G~I~~v~i~~d~~------~skG~aFV~F~~~e~A~~Al~-lng~~i~g 297 (417)
.+++|++.|+- .++ -+++|++.|++||.|.+|.|+++.. .++||+||+|.+.++|.+|+. |||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999983 222 3689999999999999999998753 257999999999999999998 99999999
Q ss_pred cceEEccCC
Q 014866 298 YPVRVLPSK 306 (417)
Q Consensus 298 ~~l~V~~s~ 306 (417)
++|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999863
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=4.9e-11 Score=117.03 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCCcEEEEcC--CCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccC---Cc--c
Q 014866 228 EIIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG---FY--P 299 (417)
Q Consensus 228 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~---g~--~ 299 (417)
...+++||||| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++ |||..+. |+ +
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 45678999999 578999999999999999999988764 46899999999999999999 9999873 45 6
Q ss_pred eEEccCC
Q 014866 300 VRVLPSK 306 (417)
Q Consensus 300 l~V~~s~ 306 (417)
|.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777753
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.9e-10 Score=91.14 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCCCC
Q 014866 241 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 308 (417)
Q Consensus 241 ~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~~~ 308 (417)
..+++++|+++|++||.|.+|.|+. .++|||||+|.+.++|..|++ +++ +.|++|+|.+++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 5689999999999999999999983 567999999999999999998 554 67999999998643
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.07 E-value=3.4e-10 Score=93.74 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCCC----------cHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCC
Q 014866 229 IIRRTVYVSDIDQQV----------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 297 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g 297 (417)
..++.|.+.|+=..- -+++|++.|++||.|.+|.+.++. ++|||||+|.+.++|.+|+. |||..++|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457788888873211 136889999999999999997653 58999999999999999998 99999999
Q ss_pred cceEEccCC
Q 014866 298 YPVRVLPSK 306 (417)
Q Consensus 298 ~~l~V~~s~ 306 (417)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999863
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-09 Score=85.13 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=62.1
Q ss_pred ccceEEEeCCCC----CCCH----HHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 014866 327 CARTIYCTNIDK----KVTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 398 (417)
Q Consensus 327 ~~~~l~V~nLp~----~~te----~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l 398 (417)
+..||+|.-.+. +.-+ .+|.+.|++ ||.|..+++..+. +||+|.+.++|.+|++|||..++||.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 346888877662 3333 679999999 5999999998874 899999999999999999999999999
Q ss_pred EEeecCCC
Q 014866 399 RVSPSKTP 406 (417)
Q Consensus 399 ~V~~a~~~ 406 (417)
+|+++.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999865
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=6.7e-09 Score=86.44 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=64.6
Q ss_pred cccceEEEeCCCCC-CCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCC-HHHHHHHHH-h--CCceeCCeeeEE
Q 014866 326 MCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM-AESAIAALN-C--SGVVLGSLPIRV 400 (417)
Q Consensus 326 ~~~~~l~V~nLp~~-~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~-~e~A~~Al~-l--ng~~l~G~~l~V 400 (417)
..+..|+|+||+.. +++++|+++|++ ||.|.+|.+.++.. .|||+|.+ .++|..|+. | ++..|.|..+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 34689999999999 999999999999 59999999988765 69999999 899999998 8 478999988888
Q ss_pred eec
Q 014866 401 SPS 403 (417)
Q Consensus 401 ~~a 403 (417)
+..
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.2e-08 Score=84.89 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecC-HHHHHHHHH-h--cCcccCCcceEEc
Q 014866 229 IIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALN-L--AGTMLGFYPVRVL 303 (417)
Q Consensus 229 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~-~e~A~~Al~-l--ng~~i~g~~l~V~ 303 (417)
.....|||+||+.+ +++++|+++|+.||+|..|.+.++.. .|||.|.+ .++|..|+. + ++..|.|..+++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 35678999999999 99999999999999999999999876 69999999 899999998 7 4677889888876
Q ss_pred cC
Q 014866 304 PS 305 (417)
Q Consensus 304 ~s 305 (417)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1e-08 Score=80.37 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=61.2
Q ss_pred CCcEEEEcCCC----CCCcH----HHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceE
Q 014866 230 IRRTVYVSDID----QQVTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVR 301 (417)
Q Consensus 230 ~~~~lfV~nLp----~~~te----~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~ 301 (417)
...||+|.-.| .++-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++|||..+.|+.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 45677777665 23333 5788999999999999999875 8999999999999999999999999999
Q ss_pred EccCCC
Q 014866 302 VLPSKT 307 (417)
Q Consensus 302 V~~s~~ 307 (417)
|..+++
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999754
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.6e-08 Score=79.70 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=61.6
Q ss_pred cccceEEEeCCCCC-----CCH----HHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCe
Q 014866 326 MCARTIYCTNIDKK-----VTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSL 396 (417)
Q Consensus 326 ~~~~~l~V~nLp~~-----~te----~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~ 396 (417)
++..||+|.-++.. +-+ .+|.+.|.+ ||.|..+++..|. +||+|.+.++|.+|++|||..++||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 34578999888643 222 568999999 5999999999874 8999999999999999999999999
Q ss_pred eeEEeecCC
Q 014866 397 PIRVSPSKT 405 (417)
Q Consensus 397 ~l~V~~a~~ 405 (417)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.66 E-value=3.6e-08 Score=90.66 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCHHHHHHHHhhcCCceEEEEEeccC------CCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 340 VTQADVKLFFESVCGEVYRLRLLGDY------HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 340 ~te~dL~~~F~~f~G~I~~v~i~~d~------~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
-.+++|++.|++ ||.|.++.|+++. +.++|++||+|.+.++|.+|++ |||+.++||.|.+.++.
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 357899999999 5999999998653 3789999999999999999999 99999999999999975
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.1e-07 Score=74.84 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=65.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcC-----CceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVC-----GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~-----G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
.++|-+-|||.++++..|+.+.++ | |.|..+.+.+|.+ -|+|+|.+...|.+|.- |+|.+|.|++|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 489999999999999999999999 8 9999999999986 69999999999988886 99999999999997
Q ss_pred e
Q 014866 402 P 402 (417)
Q Consensus 402 ~ 402 (417)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 5
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=3.5e-08 Score=77.71 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCCcEEEEcCCCCC-----CcH----HHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcc
Q 014866 229 IIRRTVYVSDIDQQ-----VTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYP 299 (417)
Q Consensus 229 ~~~~~lfV~nLp~~-----~te----~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~ 299 (417)
....||+|.-++.+ +-. .+|.+.|.+||.|..+++..|+ +||+|.+.++|.+||+|||..++||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 35678889877643 222 4688999999999999999875 99999999999999999999999999
Q ss_pred eEEccC
Q 014866 300 VRVLPS 305 (417)
Q Consensus 300 l~V~~s 305 (417)
|+|.+.
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999874
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.50 E-value=1.8e-07 Score=85.95 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=57.3
Q ss_pred CcHHHHHHHHhcCCCeeEEEEecCCC------CCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEccCC
Q 014866 243 VTEEQLAALFVGCGQVVDCRICGDPN------SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 306 (417)
Q Consensus 243 ~te~~L~~~F~~~G~I~~v~i~~d~~------~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~~s~ 306 (417)
-.+++|++.|++||.|.++.++++.. .++|++||+|.+.++|.+|+. |||..++||+|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46789999999999999999986532 368999999999999999998 99999999999999863
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=7e-06 Score=66.02 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=66.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcC-----CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceE
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGC-----GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 301 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~ 301 (417)
....++|-+-|||..+++..|+.+..++ |.+..+.+..|-. -|+|+|.+...|-+|.- |+|..|.|++|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 3457889999999999999999999999 9999999999875 69999999999999875 999999999999
Q ss_pred Ecc
Q 014866 302 VLP 304 (417)
Q Consensus 302 V~~ 304 (417)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 865
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00011 Score=58.44 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc-----CCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCCcceEEc
Q 014866 229 IIRRTVYVSDIDQQVTEEQLAALFVG-----CGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 303 (417)
Q Consensus 229 ~~~~~lfV~nLp~~~te~~L~~~F~~-----~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g~~l~V~ 303 (417)
...++|.|.|||..+.++.|.-+|+. =|+|.++.... +-|+|+|.+.+.|++.|+...+.|.|.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 45688999999999999999999986 25899888866 26899999999999999877889999999998
Q ss_pred cCCCCCCCCCCCCCCCCchhhccccceEEEeCCCCCCC
Q 014866 304 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 341 (417)
Q Consensus 304 ~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 341 (417)
+... . ...+|++.+|++.++
T Consensus 80 P~~~-----------~-------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPP-----------R-------APARLLLQGLPPGTS 99 (104)
T ss_dssp ECCC-----------C-------CCCCCCCCSCCCCCC
T ss_pred cCCC-----------C-------CcceEeeecCCCCCC
Confidence 7421 1 126788888887654
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.0002 Score=57.22 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=63.8
Q ss_pred cceEEEeCCCCCC-C----HHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEe
Q 014866 328 ARTIYCTNIDKKV-T----QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 401 (417)
Q Consensus 328 ~~~l~V~nLp~~~-t----e~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~ 401 (417)
.++|+|.||+.++ . .+.++++|.. |+.+......+... -..|.|.++++|.+|.. |++..+.|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 3789999998865 2 2578999999 59988888887654 47999999999999998 99999999999999
Q ss_pred ecCCCC
Q 014866 402 PSKTPV 407 (417)
Q Consensus 402 ~a~~~~ 407 (417)
|+++..
T Consensus 80 Fgq~~~ 85 (104)
T 1wey_A 80 FAQTLH 85 (104)
T ss_dssp CCCCSS
T ss_pred ecCCCC
Confidence 998553
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.003 Score=50.24 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=62.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhc----CCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCCeeeEEeec
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESV----CGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 403 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f----~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G~~l~V~~a 403 (417)
..+|.|.|||+.++++.|.-+|+.- =|.|.++.... +-|+|+|.+.+.|++.+.-..+.|.|.+|.|...
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 4799999999999999999999861 24899998865 3799999999999999986678899999999875
Q ss_pred CCC
Q 014866 404 KTP 406 (417)
Q Consensus 404 ~~~ 406 (417)
-+.
T Consensus 82 ~~~ 84 (104)
T 2dhx_A 82 PPR 84 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.05 E-value=0.0047 Score=50.60 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=58.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHhCCceeCC-eeeEEeec
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS-LPIRVSPS 403 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~lng~~l~G-~~l~V~~a 403 (417)
...|.|-+.|+.. ...|...|++ ||.|.+...... ..+-.|.|.++.+|++||..||..++| ..|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMSNT----GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEECSS----SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccCCC----CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 4789999999885 6788889999 599999887322 239999999999999999999999985 67777775
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.91 E-value=0.0027 Score=50.71 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCC-c----HHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCcccCCcceEEc
Q 014866 230 IRRTVYVSDIDQQV-T----EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 303 (417)
Q Consensus 230 ~~~~lfV~nLp~~~-t----e~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-lng~~i~g~~l~V~ 303 (417)
-..+|+|.||+.++ . .+.++++|..|+++......+.-. =..|.|.+.++|.+|.. |++..+.|+.|+|-
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 45789999999765 2 257899999999999888776443 46899999999999998 99999999999999
Q ss_pred cCC
Q 014866 304 PSK 306 (417)
Q Consensus 304 ~s~ 306 (417)
++.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 976
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.89 E-value=0.0032 Score=49.57 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=47.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-h
Q 014866 228 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L 290 (417)
Q Consensus 228 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-l 290 (417)
+...+.+++ ++|.++...||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+. +
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhc
Confidence 345566777 999999999999999999954 47777775 69999999999999998 5
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0039 Score=51.10 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCcccCC-cceEEccC
Q 014866 230 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGF-YPVRVLPS 305 (417)
Q Consensus 230 ~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i~g-~~l~V~~s 305 (417)
....|.|-+.|+.. ...|...|++||.|.+....... .+-.|.|.+..+|++||..||..+.| ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~----NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG----NWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS----SEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC----CeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 45679999999985 56677889999999988763222 48999999999999999999999975 56777764
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.65 E-value=0.0079 Score=47.01 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=57.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---C-CCceEEEEEeCCHHHHHHHHH-hCCceeCCe-----ee
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSL-----PI 398 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~---~-~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~-----~l 398 (417)
.+|.|++||+.+|++++.+.+++. +.+........+ + ..-.-|+|.|.+.+++..-.+ ++|+.+-+. +-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM-PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC-CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc-ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 578999999999999999999994 888777776644 1 233479999999999988888 999877432 33
Q ss_pred EEeec
Q 014866 399 RVSPS 403 (417)
Q Consensus 399 ~V~~a 403 (417)
.|++|
T Consensus 81 ~VE~A 85 (91)
T 1uw4_A 81 IVEFA 85 (91)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 45555
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.64 E-value=0.0066 Score=47.47 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=54.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHHH-hcCcccC
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLG 296 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----skG~aFV~F~~~e~A~~Al~-lng~~i~ 296 (417)
.+|-|++||+.+|++++.+.++....+.....+..+.+ .-.-|||.|.+.+++....+ ++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 46889999999999999999999988877777665432 24579999999999999888 9998874
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.32 E-value=0.0048 Score=48.65 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=45.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc
Q 014866 232 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA 291 (417)
Q Consensus 232 ~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-ln 291 (417)
+.+++ ++|.++...||.++|+.|| -..|+.+.|. -|||.|.+++.|..|+. +.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 34556 9999999999999999999 4557777775 69999999999999998 54
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.81 E-value=0.012 Score=48.84 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=56.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEE-EEEecc--------------CC-CCceEEEEEeCCHHHHHHHHHhCCce
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGD--------------YH-HSTRIAFVEFVMAESAIAALNCSGVV 392 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~-v~i~~d--------------~~-~~kG~aFV~F~~~e~A~~Al~lng~~ 392 (417)
..|.|-+.|+.. ...+.+.|++| |.|.. ....++ +. ...++-.|+|+++.+|.+|+..||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~-G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEF-GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGG-SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhh-ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 568888998765 56788899995 99866 221110 00 12458999999999999999999999
Q ss_pred eCCeeeEEeecCC
Q 014866 393 LGSLPIRVSPSKT 405 (417)
Q Consensus 393 l~G~~l~V~~a~~ 405 (417)
|+|.-|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888888753
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.62 E-value=0.034 Score=43.67 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=41.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-h
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C 388 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-l 388 (417)
..++| ++|+++...||.++|++ ||.|. |+-+-| . .|||.|.+++.|..|+. +
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~-fggv~-I~WidD-T----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSA-FGNIQ-ISWIDD-T----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTT-TCSCC-CEEEET-T----EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhc-cCCEE-EEEEcC-C----eEEEEecCHHHHHHHHHhc
Confidence 56666 99999999999999999 48432 222222 2 79999999999999998 5
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.95 E-value=0.013 Score=59.25 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=50.4
Q ss_pred hhhccCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCccc
Q 014866 223 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTML 295 (417)
Q Consensus 223 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~lng~~i 295 (417)
...+.....|+|+|. .|..+++.+|.++|++||+|.++.+..+.+ -|+.|+|.+.+++..++...+...
T Consensus 45 ~~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 45 QNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HHHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCC
T ss_pred HHHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCc
Confidence 334555567899997 799999999999999999999998887664 599999999999998775433333
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.53 E-value=0.029 Score=46.58 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=54.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeE-EEEecC-----------CC----CCceEEEEEecCHHHHHHHHHhcCcc
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGD-----------PN----SVLRFAFIEFTDEEGARAALNLAGTM 294 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d-----------~~----~skG~aFV~F~~~e~A~~Al~lng~~ 294 (417)
...|.|-+.|++.+. .+.+.|++||.|.+ +...+. +. +...+-.|+|.+..+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 345778888776654 55678999999876 221110 00 12357899999999999999999999
Q ss_pred cCCcceEEccCC
Q 014866 295 LGFYPVRVLPSK 306 (417)
Q Consensus 295 i~g~~l~V~~s~ 306 (417)
|.|.-|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877887753
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.34 E-value=0.062 Score=42.35 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=41.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 389 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-ln 389 (417)
..++| ++|+++...||.++|++ ||.| .|.-+-| . .|||.|.+++.|..|+. +.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~-fggv-~I~WidD-T----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWIDD-T----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTT-SEEE-EEEEEET-T----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhc-cCCE-EEEEEcC-C----eEEEEecCHHHHHHHHHhcc
Confidence 45566 99999999999999999 5833 3333323 2 69999999999999998 54
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.11 E-value=0.028 Score=56.84 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=45.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHHh
Q 014866 325 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 388 (417)
Q Consensus 325 ~~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~l 388 (417)
....++|+|. .|..+++.+|.++|++| |.|.++.+..+.| -||.|+|.+.+++..++..
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~-g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQF-GPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGG-SCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhc-CCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 3446899998 79999999999999995 9999999987665 4999999999999988763
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.03 E-value=0.058 Score=42.44 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=53.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccC---C-CCceEEEEEeCCHHHHHHHHH-hCCceeCCe-----e
Q 014866 328 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSL-----P 397 (417)
Q Consensus 328 ~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~---~-~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~-----~ 397 (417)
+-+|.|+.||+.+|++++.+.+++. -.+......... + ..-.-|+|.|.+.++...-.+ .+|..+-+. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3689999999999999999998885 455443333322 1 112358999999999988888 999877432 3
Q ss_pred eEEeec
Q 014866 398 IRVSPS 403 (417)
Q Consensus 398 l~V~~a 403 (417)
-.|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445555
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.75 E-value=0.045 Score=43.06 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=48.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHHH-hcCcccC
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLG 296 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~----skG~aFV~F~~~e~A~~Al~-lng~~i~ 296 (417)
+-+|-|+.||+.+|++++.+.++..-.+.....+..+.+ .-.-|||.|.+.++.....+ ++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 456899999999999998888776545433333322211 13458999999999999888 9998864
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.39 E-value=2.5 Score=43.11 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc
Q 014866 231 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA 291 (417)
Q Consensus 231 ~~~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~~skG~aFV~F~~~e~A~~Al~-ln 291 (417)
...++|+ +|..+...+|.++|+.||. .+|+.+.+. .|||.|.+.+.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 4567776 9999999999999999995 456666654 69999999999999998 64
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.43 E-value=20 Score=36.45 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=41.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hC
Q 014866 329 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 389 (417)
Q Consensus 329 ~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-ln 389 (417)
..++++ +|..+...+|.++|+.| |.+ +|+.+-+ ..|||.|.+.+.|..+++ ++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~f-g~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAF-GNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGG-CCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhc-CCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 566666 99999999999999995 854 3433222 269999999999999998 64
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.85 E-value=44 Score=28.74 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=38.9
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHH--hcCCCeeEEEEecCCCCCceEEEEEecCHH-HHHHHHHh
Q 014866 233 TVYVSDIDQ-Q--------VTEEQLAALF--VGCGQVVDCRICGDPNSVLRFAFIEFTDEE-GARAALNL 290 (417)
Q Consensus 233 ~lfV~nLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~d~~~skG~aFV~F~~~e-~A~~Al~l 290 (417)
.+.|-|+|. . .+..+|++.| +.|.++. |+....+..+.|++.|.|.+.- .-..|+.|
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 355667775 1 4457899977 8998866 6666666677899999997633 33345543
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.83 E-value=69 Score=24.16 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=40.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 386 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al 386 (417)
.-|+-.++...+..+|++.++.+|| .|..|....-+.. .--|+|.+....+|....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~-~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG-EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS-CEEEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC-ceEEEEEcCCCCcHHHHH
Confidence 3445557788999999999999888 7888876654421 225999998877775543
No 405
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=28.68 E-value=1.1e+02 Score=23.82 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHhhcCC---ceEEEEEecc---CCCCceEEEEEeCCHHHHHHH
Q 014866 338 KKVTQADVKLFFESVCG---EVYRLRLLGD---YHHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 338 ~~~te~dL~~~F~~f~G---~I~~v~i~~d---~~~~kG~aFV~F~~~e~A~~A 385 (417)
.+.+..+|++-..+.|+ .+.-|.=++. .|.++|||.| |++.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788888888776666 3333332222 2577888866 5666666544
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=27.29 E-value=50 Score=23.66 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHhhcCC----ceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH-hCCceeCCeeeEEeecC
Q 014866 339 KVTQADVKLFFESVCG----EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 404 (417)
Q Consensus 339 ~~te~dL~~~F~~f~G----~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~-lng~~l~G~~l~V~~a~ 404 (417)
.+...+|..++..-.| .|-.|.+..+ |.||+-.. +.|..+++ |++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4566677777765323 5667777533 78999876 44677777 89999999999998764
No 407
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=26.47 E-value=1e+02 Score=23.17 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~A 385 (417)
.-|+-.++...+..+|++.++.+|| .|..|....-+. ..--|+|.+....+|...
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SSEEEEEEECTTSCHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-CceEEEEEECCCCcHHHH
Confidence 3455567888999999999998888 788887665442 122699999877665443
No 408
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.14 E-value=1.1e+02 Score=23.90 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHhhcCC---ceEEEEEec-c--CCCCceEEEEEeCCHHHHHH
Q 014866 338 KKVTQADVKLFFESVCG---EVYRLRLLG-D--YHHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 338 ~~~te~dL~~~F~~f~G---~I~~v~i~~-d--~~~~kG~aFV~F~~~e~A~~ 384 (417)
.+.+..+|++-..+.|+ .+.-|.=++ . .|.+.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888887776555 233333222 2 2578888866 567666643
No 409
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.35 E-value=1.2e+02 Score=23.75 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHhhcCC---ceEEEEEec-cC--CCCceEEEEEeCCHHHHHH
Q 014866 338 KKVTQADVKLFFESVCG---EVYRLRLLG-DY--HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 338 ~~~te~dL~~~F~~f~G---~I~~v~i~~-d~--~~~kG~aFV~F~~~e~A~~ 384 (417)
.+.+..+|++-....|+ .+.-|.=++ .. |.++|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788888887776555 233333223 22 578888866 577776654
No 410
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=22.98 E-value=1.2e+02 Score=25.10 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=40.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~A 385 (417)
.-|+--++...+..+|++.++.+|| .|..|..+.-++..+ -|||.+....+|...
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K-KAyV~L~~~~daldv 135 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK-KAYVRLTADYDALDI 135 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE-EEEEEECTTCCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce-EEEEEeCCCCcHHHH
Confidence 3455557788999999999998888 788887766553222 599999877666543
No 411
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=22.23 E-value=1.8e+02 Score=23.85 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHhhcCC---ceEEEEEec-cC--CCCceEEEEEeCCHHHHHH
Q 014866 338 KKVTQADVKLFFESVCG---EVYRLRLLG-DY--HHSTRIAFVEFVMAESAIA 384 (417)
Q Consensus 338 ~~~te~dL~~~F~~f~G---~I~~v~i~~-d~--~~~kG~aFV~F~~~e~A~~ 384 (417)
.+++..+|++-+...|+ .+..|.=++ .. |.+.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 46889999999887777 333333222 22 567888877 566666654
No 412
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.28 E-value=1.3e+02 Score=25.34 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=40.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 386 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al 386 (417)
.-|+-.++...+..+|++.++.+|| .|..|..+.-.+. .--|||.+....+|....
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~-~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDG-EKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSS-CEEEEEEECTTSCHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCC-ceEEEEEECCCCcHHHHH
Confidence 3445557788999999999998888 8888877665542 226999998766654443
No 413
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.26 E-value=1.3e+02 Score=25.18 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhhcCC-ceEEEEEeccCCCCceEEEEEeCCHHHHHHH
Q 014866 330 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 385 (417)
Q Consensus 330 ~l~V~nLp~~~te~dL~~~F~~f~G-~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~A 385 (417)
.-|+--++...+..+|++.++.+|| .|..|..+.-++. .--|||.+....+|...
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g-~KKAyV~La~~~dAldv 143 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITG-NKKAYIRLAADSDSLTL 143 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-CEEEEEEECSSSCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC-cEEEEEEcCCCCcHHHH
Confidence 3445556778999999999998888 7888877665432 22599999876666543
No 414
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.62 E-value=2.8e+02 Score=20.98 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhhcCCceEEEEEeccCCCCceEEEEEeCCHHHHHHHHH--hCCceeCCeeeEEee
Q 014866 326 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN--CSGVVLGSLPIRVSP 402 (417)
Q Consensus 326 ~~~~~l~V~nLp~~~te~dL~~~F~~f~G~I~~v~i~~d~~~~kG~aFV~F~~~e~A~~Al~--lng~~l~G~~l~V~~ 402 (417)
...+.|-|-|+|..+-..++.-...-. |--..|... .|.|.|.|.+.++-.-|+. ||. ++..|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhl-gyefycdyi------dgqamirfqnsdeqrlaiqkllnh---nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHL-GYEFYCDYI------DGQAMIRFQNSDEQRLAIQKLLNH---NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTT-CCCEEEEEC------SSCEEEEESSHHHHHHHHHHHEET---TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhc-CeeEeeeee------cCeeEEEecCChHHHHHHHHHHhc---CCCEEEEEE
Done!