BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014870
         (417 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain
           At4g01050 From Arabidopsis Thaliana
 pdb|2DCQ|A Chain A, Fully Automated Nmr Structure Determination Of The
           Rhodanese Homology Domain At4g01050(175-295) From
           Arabidopsis Thaliana
          Length = 134

 Score =  204 bits (520), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 108/122 (88%)

Query: 141 ARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK 200
           A+NAY KLG D +AQLLDIRA  +FRQVGSP+++GLGK+ VS VY G+DKPGFLKKLSLK
Sbjct: 9   AKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLK 68

Query: 201 FKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKA 260
           FK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY IKDGAEGPRGW+NS LPWI PKK 
Sbjct: 69  FKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKT 128

Query: 261 LG 262
            G
Sbjct: 129 SG 130


>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
          Length = 148

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 19/128 (14%)

Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVY---KGDDKPGFLKKLSLK 200
           A+  L D+  A L+D+R   E+R VG PD+  LG+  V + +    G     FL +L  +
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71

Query: 201 F----KEPENTTLFILDKFDGNSEL-VAELVTINGFKNAYTIKDG------AEGPR---G 246
                 + E   +F+     GN  +  AE+ T  G   AY + DG      AEG R   G
Sbjct: 72  IPADADQHERPVIFLCRS--GNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATG 129

Query: 247 WMNSGLPW 254
           W   GLPW
Sbjct: 130 WRAVGLPW 137


>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
           Transferase Homodimer From Wolinella Succinogenes
 pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
           Transferase Homodimer From Wolinella Succinogenes
          Length = 137

 Score = 36.6 bits (83), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 13/114 (11%)

Query: 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL 199
           S ++AY  L ++    L+D+R P E + +G PDV+         + +G  +P  L K  L
Sbjct: 26  SPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKN-----YKHMSRGKLEP-LLAKSGL 79

Query: 200 KFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253
             ++P    + +  K    + L  + +   GFK  Y  + G +    W+  GLP
Sbjct: 80  DPEKP----VVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD---KWLEEGLP 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,193,437
Number of Sequences: 62578
Number of extensions: 389841
Number of successful extensions: 774
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 13
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)