Query 014870
Match_columns 417
No_of_seqs 299 out of 1621
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05320 rhodanese superfamily 99.9 1.8E-23 3.8E-28 203.6 10.1 201 49-268 25-233 (257)
2 PRK01415 hypothetical protein; 99.9 3.1E-23 6.6E-28 201.1 9.5 201 49-268 27-231 (247)
3 COG1054 Predicted sulfurtransf 99.8 1.9E-21 4.1E-26 191.4 4.4 260 48-334 26-293 (308)
4 cd01518 RHOD_YceA Member of th 99.8 7.1E-20 1.5E-24 151.8 8.4 99 138-249 3-101 (101)
5 PRK00142 putative rhodanese-re 99.8 1.6E-19 3.5E-24 180.4 11.1 202 51-273 28-236 (314)
6 PLN02160 thiosulfate sulfurtra 99.8 4E-19 8.7E-24 157.3 10.8 110 135-258 13-130 (136)
7 cd01533 4RHOD_Repeat_2 Member 99.8 7.2E-19 1.6E-23 147.9 10.8 100 136-251 9-109 (109)
8 KOG1530 Rhodanese-related sulf 99.8 1.6E-18 3.4E-23 153.1 10.1 110 134-255 20-135 (136)
9 PRK00162 glpE thiosulfate sulf 99.8 4.1E-18 8.9E-23 143.1 10.8 104 136-258 4-107 (108)
10 cd01522 RHOD_1 Member of the R 99.8 3.4E-18 7.4E-23 146.7 10.3 108 139-255 1-116 (117)
11 cd01523 RHOD_Lact_B Member of 99.7 4.4E-18 9.5E-23 140.6 9.0 96 139-248 1-99 (100)
12 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.7E-17 3.6E-22 151.3 12.3 113 132-254 31-162 (162)
13 cd01527 RHOD_YgaP Member of th 99.7 1.5E-17 3.2E-22 137.0 9.5 97 138-254 3-99 (99)
14 cd01534 4RHOD_Repeat_3 Member 99.7 2E-17 4.2E-22 136.0 9.4 93 139-248 1-94 (95)
15 COG0607 PspE Rhodanese-related 99.7 4.3E-17 9.3E-22 134.9 9.2 96 146-257 13-109 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 1E-16 2.2E-21 138.0 9.1 106 137-254 8-118 (122)
17 cd01528 RHOD_2 Member of the R 99.7 2E-16 4.3E-21 131.2 10.1 96 139-249 2-98 (101)
18 cd01525 RHOD_Kc Member of the 99.7 1.1E-16 2.5E-21 132.6 7.8 100 139-248 1-104 (105)
19 cd01444 GlpE_ST GlpE sulfurtra 99.7 3.1E-16 6.7E-21 127.5 9.8 93 139-248 2-95 (96)
20 cd01447 Polysulfide_ST Polysul 99.7 2.6E-16 5.6E-21 129.3 9.3 101 139-251 1-103 (103)
21 cd01519 RHOD_HSP67B2 Member of 99.7 2.7E-16 5.8E-21 130.3 9.5 99 140-249 2-106 (106)
22 cd01521 RHOD_PspE2 Member of t 99.7 3.7E-16 8E-21 132.0 10.3 100 137-254 8-110 (110)
23 cd01530 Cdc25 Cdc25 phosphatas 99.6 3.4E-16 7.4E-21 135.7 8.5 97 138-248 3-120 (121)
24 cd01448 TST_Repeat_1 Thiosulfa 99.6 1E-15 2.2E-20 130.6 10.9 101 139-251 2-122 (122)
25 smart00450 RHOD Rhodanese Homo 99.6 9.3E-16 2E-20 122.4 9.5 92 151-253 2-100 (100)
26 cd01520 RHOD_YbbB Member of th 99.6 1.3E-15 2.9E-20 132.5 10.3 98 139-249 1-126 (128)
27 cd01449 TST_Repeat_2 Thiosulfa 99.6 8.7E-16 1.9E-20 129.8 7.7 101 139-249 1-118 (118)
28 cd01531 Acr2p Eukaryotic arsen 99.6 1.3E-15 2.9E-20 129.1 8.8 101 137-250 2-112 (113)
29 cd01535 4RHOD_Repeat_4 Member 99.6 1.8E-15 4E-20 135.5 9.9 100 144-261 2-101 (145)
30 cd01532 4RHOD_Repeat_1 Member 99.6 2.1E-15 4.5E-20 123.9 8.6 85 147-249 5-92 (92)
31 cd01529 4RHOD_Repeats Member o 99.6 2.4E-15 5.1E-20 123.6 8.4 86 151-249 10-96 (96)
32 PRK08762 molybdopterin biosynt 99.6 3.5E-15 7.6E-20 151.9 10.9 105 136-258 2-106 (376)
33 cd01524 RHOD_Pyr_redox Member 99.6 4.8E-15 1.1E-19 120.6 9.3 89 139-248 1-89 (90)
34 PF00581 Rhodanese: Rhodanese- 99.6 4.1E-15 8.9E-20 122.6 8.9 100 140-250 1-113 (113)
35 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 5.6E-15 1.2E-19 125.4 8.4 98 138-248 3-112 (113)
36 cd00158 RHOD Rhodanese Homolog 99.5 1.2E-14 2.6E-19 114.9 6.8 88 144-248 2-89 (89)
37 TIGR02981 phageshock_pspE phag 99.5 4.6E-14 1E-18 119.6 9.7 81 151-248 16-96 (101)
38 PRK07878 molybdopterin biosynt 99.5 3.3E-14 7.1E-19 146.0 10.0 102 136-253 286-387 (392)
39 PRK10287 thiosulfate:cyanide s 99.5 1E-13 2.2E-18 118.2 9.0 81 151-248 18-98 (104)
40 PRK07411 hypothetical protein; 99.5 1.3E-13 2.7E-18 141.7 9.6 105 136-254 281-386 (390)
41 PRK05600 thiamine biosynthesis 99.4 1.8E-13 4E-18 139.8 8.8 95 138-241 272-368 (370)
42 PRK11493 sseA 3-mercaptopyruva 99.4 8.5E-13 1.8E-17 129.3 11.1 110 138-258 6-137 (281)
43 PRK11493 sseA 3-mercaptopyruva 99.4 5E-13 1.1E-17 130.9 8.5 108 140-257 156-280 (281)
44 PRK09629 bifunctional thiosulf 99.4 1.1E-12 2.4E-17 141.7 11.4 108 138-257 10-130 (610)
45 PLN02723 3-mercaptopyruvate su 99.3 4.5E-12 9.7E-17 126.9 10.8 109 137-257 22-152 (320)
46 TIGR03167 tRNA_sel_U_synt tRNA 99.3 2.1E-12 4.6E-17 129.4 8.0 93 153-256 2-121 (311)
47 PRK05597 molybdopterin biosynt 99.3 3E-12 6.5E-17 130.0 8.7 94 138-250 262-355 (355)
48 PRK11784 tRNA 2-selenouridine 99.3 3.7E-12 7.9E-17 129.3 9.0 103 140-255 4-134 (345)
49 PLN02723 3-mercaptopyruvate su 99.3 4.4E-12 9.5E-17 126.9 8.8 109 139-257 192-318 (320)
50 cd01446 DSP_MapKP N-terminal r 99.3 9.9E-12 2.1E-16 108.1 9.7 101 139-249 2-126 (132)
51 PRK09629 bifunctional thiosulf 99.2 2.1E-11 4.7E-16 131.9 10.3 112 138-259 148-274 (610)
52 cd01445 TST_Repeats Thiosulfat 99.2 1.1E-10 2.3E-15 103.9 9.8 100 139-248 1-137 (138)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.0 1.1E-09 2.3E-14 115.6 8.9 74 151-239 405-482 (482)
54 COG2897 SseA Rhodanese-related 98.8 1.1E-08 2.4E-13 101.8 9.4 110 138-257 157-283 (285)
55 KOG2017 Molybdopterin synthase 98.7 1.2E-08 2.6E-13 103.3 4.9 102 137-250 317-419 (427)
56 COG2897 SseA Rhodanese-related 98.6 4.2E-07 9.1E-12 90.6 11.1 108 138-256 12-138 (285)
57 KOG3772 M-phase inducer phosph 98.1 5.4E-06 1.2E-10 83.7 6.3 107 132-250 151-276 (325)
58 KOG1529 Mercaptopyruvate sulfu 97.4 0.0013 2.8E-08 65.7 10.4 109 138-258 6-138 (286)
59 PLN03209 translocon at the inn 97.2 0.00061 1.3E-08 74.1 6.0 20 398-417 372-391 (576)
60 PLN03209 translocon at the inn 97.1 0.00055 1.2E-08 74.4 4.9 19 399-417 440-458 (576)
61 KOG1529 Mercaptopyruvate sulfu 96.5 0.0055 1.2E-07 61.3 6.4 89 151-249 170-275 (286)
62 TIGR01244 conserved hypothetic 96.1 0.029 6.3E-07 49.8 8.2 86 137-226 13-106 (135)
63 COG5105 MIH1 Mitotic inducer, 96.1 0.01 2.3E-07 60.4 5.9 114 132-264 237-372 (427)
64 PF04273 DUF442: Putative phos 95.8 0.034 7.3E-07 48.3 7.2 85 137-225 13-105 (110)
65 PF14159 CAAD: CAAD domains of 95.4 0.044 9.6E-07 46.2 6.2 39 303-341 48-86 (90)
66 PLN02777 photosystem I P subun 90.5 0.26 5.6E-06 45.9 3.4 39 305-343 125-163 (167)
67 COG2603 Predicted ATPase [Gene 88.9 0.47 1E-05 48.2 4.1 83 151-241 13-123 (334)
68 cd00127 DSPc Dual specificity 88.4 1.7 3.8E-05 37.1 6.8 65 151-222 26-98 (139)
69 PF13350 Y_phosphatase3: Tyros 87.0 2.6 5.6E-05 38.1 7.4 48 136-186 27-74 (164)
70 smart00195 DSPc Dual specifici 86.9 3.2 6.9E-05 35.8 7.7 74 151-231 25-106 (138)
71 PLN02727 NAD kinase 85.1 3.1 6.6E-05 48.2 8.2 88 137-227 267-364 (986)
72 COG3453 Uncharacterized protei 67.9 17 0.00038 32.7 6.3 79 137-223 14-104 (130)
73 PF09992 DUF2233: Predicted pe 65.5 7.5 0.00016 35.1 3.7 38 204-241 98-140 (170)
74 PTZ00242 protein tyrosine phos 64.0 43 0.00093 30.8 8.4 26 204-229 96-123 (166)
75 PF05706 CDKN3: Cyclin-depende 63.3 19 0.00041 34.0 5.9 85 143-230 63-159 (168)
76 PF00782 DSPc: Dual specificit 61.1 8.3 0.00018 32.9 3.0 74 152-232 18-102 (133)
77 PF01451 LMWPc: Low molecular 58.2 8.6 0.00019 33.4 2.6 33 209-241 1-38 (138)
78 cd00927 Cyt_c_Oxidase_VIc Cyto 55.1 50 0.0011 26.9 6.3 40 314-357 26-65 (70)
79 PRK00575 tatA twin arginine tr 50.9 43 0.00093 28.7 5.5 59 309-373 11-70 (92)
80 KOG1093 Predicted protein kina 50.7 4.7 0.0001 44.5 -0.3 91 138-241 623-715 (725)
81 PF03162 Y_phosphatase2: Tyros 49.3 27 0.00059 32.2 4.5 27 203-229 88-115 (164)
82 TIGR00853 pts-lac PTS system, 48.5 21 0.00046 30.0 3.4 35 206-241 3-41 (95)
83 PF13344 Hydrolase_6: Haloacid 48.4 29 0.00062 29.2 4.2 36 192-232 21-57 (101)
84 PTZ00393 protein tyrosine phos 46.0 65 0.0014 32.0 6.8 72 151-232 115-198 (241)
85 PF02937 COX6C: Cytochrome c o 43.1 1E+02 0.0022 25.2 6.4 32 322-357 36-67 (73)
86 PRK12361 hypothetical protein; 42.9 68 0.0015 34.8 7.0 85 139-228 108-199 (547)
87 TIGR02689 ars_reduc_gluta arse 42.4 42 0.0009 29.1 4.4 49 207-255 1-57 (126)
88 smart00226 LMWPc Low molecular 41.6 34 0.00074 29.8 3.8 36 209-247 1-37 (140)
89 cd05565 PTS_IIB_lactose PTS_II 40.9 29 0.00064 29.7 3.1 33 208-241 2-38 (99)
90 PRK09590 celB cellobiose phosp 40.6 30 0.00065 29.8 3.1 34 207-241 2-39 (104)
91 COG2453 CDC14 Predicted protei 39.7 43 0.00093 31.0 4.3 29 204-232 103-134 (180)
92 PF03853 YjeF_N: YjeF-related 39.5 48 0.001 30.4 4.5 54 203-257 22-87 (169)
93 cd00133 PTS_IIB PTS_IIB: subun 37.9 30 0.00065 26.3 2.6 26 208-233 1-31 (84)
94 PF02302 PTS_IIB: PTS system, 37.7 41 0.00088 26.8 3.4 25 208-232 1-30 (90)
95 PRK10499 PTS system N,N'-diace 37.4 40 0.00087 28.9 3.4 21 207-227 4-24 (106)
96 cd05564 PTS_IIB_chitobiose_lic 37.3 34 0.00074 28.6 2.9 33 208-241 1-37 (96)
97 PRK10126 tyrosine phosphatase; 36.2 45 0.00098 29.8 3.7 34 207-241 3-37 (147)
98 PRK00142 putative rhodanese-re 36.0 7.7 0.00017 39.4 -1.4 83 139-235 16-105 (314)
99 COG0062 Uncharacterized conser 35.1 88 0.0019 30.3 5.7 36 206-241 49-87 (203)
100 COG4822 CbiK Cobalamin biosynt 33.9 85 0.0019 31.2 5.4 45 193-237 123-173 (265)
101 PRK10310 PTS system galactitol 33.4 52 0.0011 27.5 3.4 33 208-241 4-41 (94)
102 cd00115 LMWPc Substituted upda 33.0 50 0.0011 28.9 3.4 34 208-241 2-37 (141)
103 PF14606 Lipase_GDSL_3: GDSL-l 32.8 64 0.0014 30.6 4.3 82 134-239 42-144 (178)
104 PRK13530 arsenate reductase; P 32.3 78 0.0017 28.0 4.6 35 207-241 4-39 (133)
105 PRK11391 etp phosphotyrosine-p 31.1 73 0.0016 28.5 4.2 34 207-241 3-37 (144)
106 PLN03050 pyridoxine (pyridoxam 30.1 72 0.0016 31.4 4.3 27 206-232 60-89 (246)
107 smart00012 PTPc_DSPc Protein t 30.1 77 0.0017 25.0 3.8 17 206-222 39-56 (105)
108 smart00404 PTPc_motif Protein 30.1 77 0.0017 25.0 3.8 17 206-222 39-56 (105)
109 PRK03100 sec-independent trans 30.0 2.4E+02 0.0053 25.7 7.3 10 356-365 81-90 (136)
110 TIGR03167 tRNA_sel_U_synt tRNA 29.8 1.5E+02 0.0032 30.4 6.6 71 137-219 136-209 (311)
111 PRK07688 thiamine/molybdopteri 29.3 56 0.0012 33.6 3.6 37 135-172 275-316 (339)
112 PLN02918 pyridoxine (pyridoxam 28.9 96 0.0021 34.3 5.4 48 206-254 135-192 (544)
113 PF04122 CW_binding_2: Putativ 28.4 75 0.0016 25.8 3.5 34 205-241 49-82 (92)
114 PF10777 YlaC: Inner membrane 27.7 27 0.00059 32.4 0.9 67 104-174 30-97 (155)
115 PF04722 Ssu72: Ssu72-like pro 27.0 72 0.0016 30.8 3.6 29 208-237 3-32 (195)
116 TIGR03642 cas_csx13 CRISPR-ass 26.8 1.1E+02 0.0024 27.4 4.6 29 209-237 92-123 (124)
117 KOG0333 U5 snRNP-like RNA heli 26.7 93 0.002 34.7 4.7 47 194-241 505-551 (673)
118 TIGR00201 comF comF family pro 26.2 87 0.0019 29.1 4.0 33 205-237 151-186 (190)
119 cd05566 PTS_IIB_galactitol PTS 24.8 79 0.0017 25.3 3.0 25 208-232 2-31 (89)
120 cd05567 PTS_IIB_mannitol PTS_I 24.6 86 0.0019 25.4 3.2 25 208-232 2-31 (87)
121 cd00079 HELICc Helicase superf 23.9 1.2E+02 0.0027 24.7 4.1 36 205-241 27-62 (131)
122 PF03276 Gag_spuma: Spumavirus 23.7 4.6E+02 0.0099 29.3 9.2 19 301-319 136-154 (582)
123 PRK15375 pathogenicity island 23.5 1.3E+02 0.0028 33.3 5.1 34 57-90 16-49 (535)
124 TIGR02691 arsC_pI258_fam arsen 23.4 1E+02 0.0022 27.0 3.7 34 209-242 1-35 (129)
125 PLN03049 pyridoxine (pyridoxam 23.0 1.5E+02 0.0033 31.9 5.5 27 206-232 59-88 (462)
126 COG1440 CelA Phosphotransferas 22.9 87 0.0019 27.3 3.0 23 207-229 2-24 (102)
127 PF15086 UPF0542: Uncharacteri 22.8 96 0.0021 25.6 3.0 33 93-125 2-34 (74)
128 TIGR00640 acid_CoA_mut_C methy 22.4 2E+02 0.0044 25.5 5.4 48 206-253 53-107 (132)
129 COG0394 Wzb Protein-tyrosine-p 22.3 1.2E+02 0.0026 27.3 3.9 35 207-241 3-38 (139)
130 COG0514 RecQ Superfamily II DN 22.2 1.2E+02 0.0025 34.0 4.6 59 204-263 228-292 (590)
131 PF02590 SPOUT_MTase: Predicte 22.2 89 0.0019 28.8 3.1 41 204-244 65-110 (155)
132 KOG1368 Threonine aldolase [Am 22.1 6.3E+02 0.014 26.6 9.3 201 151-364 95-338 (384)
133 PF07462 MSP1_C: Merozoite sur 22.1 3.7E+02 0.0081 30.0 8.1 17 357-373 254-270 (574)
134 PF00156 Pribosyltran: Phospho 22.1 1.3E+02 0.0027 25.1 3.8 32 205-236 87-121 (125)
135 PF01488 Shikimate_DH: Shikima 21.9 1.7E+02 0.0037 25.6 4.8 33 205-238 11-43 (135)
136 PF02863 Arg_repressor_C: Argi 21.9 1.2E+02 0.0026 24.0 3.5 26 204-229 45-70 (70)
137 COG2518 Pcm Protein-L-isoaspar 21.5 87 0.0019 30.5 3.1 41 208-251 96-137 (209)
138 cd05563 PTS_IIB_ascorbate PTS_ 21.4 91 0.002 24.8 2.7 26 208-233 1-31 (86)
139 PRK11192 ATP-dependent RNA hel 21.2 1.9E+02 0.0042 29.9 5.8 37 204-241 243-279 (434)
140 PRK04837 ATP-dependent RNA hel 21.2 1.8E+02 0.0039 30.1 5.5 37 204-241 253-289 (423)
141 TIGR02804 ExbD_2 TonB system t 21.1 4E+02 0.0086 22.9 6.9 34 204-237 82-118 (121)
142 TIGR03158 cas3_cyano CRISPR-as 20.8 1.9E+02 0.0041 29.6 5.5 38 204-241 270-308 (357)
143 TIGR00197 yjeF_nterm yjeF N-te 20.8 1.5E+02 0.0032 28.2 4.4 32 205-237 44-78 (205)
144 PF09796 QCR10: Ubiquinol-cyto 20.7 1.2E+02 0.0026 24.3 3.1 46 284-348 15-61 (64)
145 KOG0559 Dihydrolipoamide succi 20.2 68 0.0015 34.0 2.1 8 382-389 172-179 (457)
146 PRK04537 ATP-dependent RNA hel 20.2 1.6E+02 0.0034 32.4 5.0 39 202-241 253-291 (572)
No 1
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.89 E-value=1.8e-23 Score=203.62 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=137.1
Q ss_pred HHHHHhhhhccceeeecccccccccccccHHHHHHhhhcCCCCCCchhHHHHHHHhhhccCHHHHHHHHHHHHHHHHH-H
Q 014870 49 FLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVL-S 127 (417)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~li~F~~~np~lia~~va~l~l~~vi-~ 127 (417)
+.-|-..++.|||||+.||||+++|.+....+++...+..- +.++.+..+ +++...+|+--.-.-+- =.++. .
T Consensus 25 ~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~~---~~~~dl~~k-~~~~~~~pF~~l~vk~k--~eiv~~g 98 (257)
T PRK05320 25 LARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRAD---ARFADLQVK-ESLSDSQPFRRMLVKLK--REIITMK 98 (257)
T ss_pred HHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhhC---CCccCceee-cccccCCCchhccchhh--hHHhhcC
Confidence 45577889999999999999999999999888888877742 233333222 13444555533111110 00100 0
Q ss_pred H-hhcCCC-CCcccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhh
Q 014870 128 Q-VLNKPK-SWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK 200 (417)
Q Consensus 128 ~-~~~~~k-~~g~ISa~ea~elLn~~-----~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~ 200 (417)
. ..+... ....+++.++.+++++. ++.++||||++.||+. ||++ |++|||+..+. ++.+.+...
T Consensus 99 ~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~-Ghi~------GAiniPl~~f~--~~~~~l~~~ 169 (257)
T PRK05320 99 RPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDV-GTFD------GALDYRIDKFT--EFPEALAAH 169 (257)
T ss_pred CcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHcc-CccC------CCEeCChhHhh--hhHHHHHhh
Confidence 0 011111 23589999999998642 3479999999999986 7776 89999986422 222233322
Q ss_pred hCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCCCCcccccchh
Q 014870 201 FKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNL 268 (417)
Q Consensus 201 lk~~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~k~~~~dl~rq 268 (417)
....++++|++||++|.||.+|++.|+++||++||+|+||| .+|.+.--.-.-.++.|.|| +|.
T Consensus 170 ~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~G~~fVFD-~R~ 233 (257)
T PRK05320 170 RADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGI---LKYFEEVGGAHYDGDCFVFD-YRT 233 (257)
T ss_pred hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCH---HHHHHhCCCCeeeeeeeeec-Cee
Confidence 22237899999999999999999999999999999999999 99987422212334678898 654
No 2
>PRK01415 hypothetical protein; Validated
Probab=99.89 E-value=3.1e-23 Score=201.13 Aligned_cols=201 Identities=9% Similarity=0.060 Sum_probs=136.4
Q ss_pred HHHHHhhhhccceeeecccccccccccccHHHHHHhhhcCCCCCCchhHHHHHHHhhhccCHHHHHHHHHH--HHHHHHH
Q 014870 49 FLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI--LAVPLVL 126 (417)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~li~F~~~np~lia~~va~--l~l~~vi 126 (417)
+.-|-..++.|||||+.||||++||.+..-.+++.+.+.+.+. +..+--.+ +....+||--+-+-.- ++ .+-+
T Consensus 27 ~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~~---~~~~~~k~-s~~~~~~F~~l~vr~k~eiV-~~g~ 101 (247)
T PRK01415 27 LLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLTG---PKDVNVKI-NYSDVHPFQKLKVRLKKEIV-AMNV 101 (247)
T ss_pred HHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCcC---CCCceeec-ccccCCCCCccEEEeeceEE-ecCC
Confidence 4567789999999999999999999998888888877775332 22221111 1233454321111000 00 0000
Q ss_pred HHhhcCCCCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCC
Q 014870 127 SQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPEN 206 (417)
Q Consensus 127 ~~~~~~~k~~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kd 206 (417)
............|+++++.++++ ++++++||||++.||+. ||++ ||+|+|+..+. ++.+.+......+++
T Consensus 102 ~~~~~~~~~g~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~-Ghi~------gAinip~~~f~--e~~~~~~~~~~~~k~ 171 (247)
T PRK01415 102 DDLNVDLFKGEYIEPKDWDEFIT-KQDVIVIDTRNDYEVEV-GTFK------SAINPNTKTFK--QFPAWVQQNQELLKG 171 (247)
T ss_pred CCCCccccCccccCHHHHHHHHh-CCCcEEEECCCHHHHhc-CCcC------CCCCCChHHHh--hhHHHHhhhhhhcCC
Confidence 11111111235899999999997 78899999999999997 7776 89999976321 121112111123689
Q ss_pred CeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCc--cCCCCCcccccchh
Q 014870 207 TTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLSNL 268 (417)
Q Consensus 207 k~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv--~~~~k~~~~dl~rq 268 (417)
++|++||++|.||.+|++.|+++||++||+|+||| .+|.+..-+- .-.++.|+|| +|.
T Consensus 172 k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi---~~w~~~~~~~~~~w~G~~fVFD-~R~ 231 (247)
T PRK01415 172 KKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGI---LQYLEDTQNKNNLWQGECFVFD-DRR 231 (247)
T ss_pred CeEEEECCCChHHHHHHHHHHHcCCCcEEEechHH---HHHHHhcccCCCeeeeeeeeeC-cee
Confidence 99999999999999999999999999999999999 9998865432 1234679999 654
No 3
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.83 E-value=1.9e-21 Score=191.41 Aligned_cols=260 Identities=15% Similarity=0.089 Sum_probs=172.9
Q ss_pred hHHHHHhhhhccceeeecccccccccccccHHHHHHhhhcCCCCCCchhHHHHHHHhhhccCHHHHHHHHHH--HHHHHH
Q 014870 48 NFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTI--LAVPLV 125 (417)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~li~F~~~np~lia~~va~--l~l~~v 125 (417)
-++-|-+.++.||||||+||||+++|.+....|++.+.+.+.+ .++++.-+ ++...++||.-+-+..= ++...
T Consensus 26 l~~~~~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~---~f~~l~~K-~s~~~~~pF~r~kVk~kkEIV~lg- 100 (308)
T COG1054 26 LLALCKALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADP---GFADLRFK-ISEADEKPFWRLKVKLKKEIVALG- 100 (308)
T ss_pred HHHHHHHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCc---ccccceee-eccccCCCcceEEEeehhhheecC-
Confidence 3677889999999999999999999999999999999999755 33343333 22444555543221000 00000
Q ss_pred HHHhhcCCCCC-cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCC
Q 014870 126 LSQVLNKPKSW-GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEP 204 (417)
Q Consensus 126 i~~~~~~~k~~-g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~ 204 (417)
+..-.+..... ..|+|+++++++. +++.++||+|+..||+. ||.. ||++.+...+. +|.+.++......
T Consensus 101 ~~ddv~p~~~vG~yl~p~~wn~~l~-D~~~vviDtRN~YE~~i-G~F~------gAv~p~~~tFr--efP~~v~~~~~~~ 170 (308)
T COG1054 101 VEDDVDPLENVGTYLSPKDWNELLS-DPDVVVIDTRNDYEVAI-GHFE------GAVEPDIETFR--EFPAWVEENLDLL 170 (308)
T ss_pred CCCCcCccccccCccCHHHHHHHhc-CCCeEEEEcCcceeEee-eeec------CccCCChhhhh--hhHHHHHHHHHhc
Confidence 01111222223 4899999999996 89999999999999995 8886 89988765321 3434444333345
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCCh-hhHHhCCCCccCCCCCcccccchhhHHHhhhhccC----
Q 014870 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP-RGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEG---- 279 (417)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~-~aWk~aGLPv~~~~k~~~~dl~rqvr~ia~~v~~~---- 279 (417)
++++|++||..|.|++++..+|+..||++||+|+|||..| ..-...|.=| -++-|+|| +|+.-.+.......
T Consensus 171 ~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~~g~lw--~G~cFVFD-eRvav~~~l~~~~~~~C~ 247 (308)
T COG1054 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVGTEGSLW--DGKCFVFD-ERVAVPIGLVEGDHTPCD 247 (308)
T ss_pred cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcCccCcee--ccceeEec-ceecccCcccCCCcchhh
Confidence 7889999999999999999999999999999999999555 2222233322 23578899 77665554433211
Q ss_pred CcchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 014870 280 SEGFSVTLAIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQ 334 (417)
Q Consensus 280 s~~~P~~~~laa~vG~Gl~a~~~~e~~lq~~Gt~al~~~l~~kl~~~e~rk~t~~ 334 (417)
-...|.... +. .+.-+..-++.|.|.-...-.-|+.|.+-+++...
T Consensus 248 ~C~~p~~~~--------~~-~~~~~~~~~~~~~C~~ec~~~~~~r~~e~~r~~~~ 293 (308)
T COG1054 248 NCRNPLCNL--------LF-ISCEYCEGKYCGCCSDECSEEPRLRYEERQRQRAL 293 (308)
T ss_pred hcCCCCCHH--------Hh-hcchhhhcccCCCccHHHhhhhhhHHHHHHHHHHH
Confidence 112233322 11 23334445778888888888778877776666554
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=7.1e-20 Score=151.83 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=81.6
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCc
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (417)
.|++.++.++++ +++.++||||++.||+. ||++ |++|||+..+. .+.+.+....+.+++++|||||++|.
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~-ghi~------gA~~ip~~~~~--~~~~~~~~~~~~~~~~~ivvyC~~G~ 72 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDI-GHFK------GAVNPDVDTFR--EFPFWLDENLDLLKGKKVLMYCTGGI 72 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhc-CEec------cccCCCcccHh--HhHHHHHhhhhhcCCCEEEEECCCch
Confidence 589999999996 67899999999999997 6665 89999987432 12223322122368899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHh
Q 014870 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 218 RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~ 249 (417)
||..++.+|+++||++||+|.||+ .+|.+
T Consensus 73 rs~~a~~~L~~~G~~~v~~l~GG~---~~W~~ 101 (101)
T cd01518 73 RCEKASAYLKERGFKNVYQLKGGI---LKYLE 101 (101)
T ss_pred hHHHHHHHHHHhCCcceeeechhH---HHHhC
Confidence 999999999999999999999999 99963
No 5
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.80 E-value=1.6e-19 Score=180.43 Aligned_cols=202 Identities=13% Similarity=0.135 Sum_probs=133.9
Q ss_pred HHHhhhhccceeeecccccccccccccHHHHHHhhhcCCC--CCCchhHHHHHHHhhhccCHHHHH--HHHHHHHHHHHH
Q 014870 51 ECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSA--SDVDASGFIDSVISFGTENPLAIA--GGVTILAVPLVL 126 (417)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~m~~li~F~~~np~lia--~~va~l~l~~vi 126 (417)
.|..-.+.|+++++.+|||++|+.|..-.++....+.... .++++- .+...++++--+ -..--+ +.+-+
T Consensus 28 ~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~~~~~~i~l~------~~~~~~~~f~~l~~~~~~eL-v~~G~ 100 (314)
T PRK00142 28 LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKADPRFADIRFK------ISEDDGHAFPRLSVKVRKEI-VALGL 100 (314)
T ss_pred HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhCcCCCCceEE------eccccCCCcccceeeeeeee-eecCC
Confidence 3456778899999999999999999877777766665431 122221 011112222000 000000 00000
Q ss_pred H-HhhcCCCCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCC
Q 014870 127 S-QVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPE 205 (417)
Q Consensus 127 ~-~~~~~~k~~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~K 205 (417)
. ++.........++++++.++++ +++.++||||++.||+. ||++ ||+|+|+..+. ++.+.+...+...+
T Consensus 101 d~~v~~~~~~~~~is~~el~~~l~-~~~~vlIDVR~~~E~~~-GhI~------GAi~ip~~~~~--~~~~~l~~~~~~~k 170 (314)
T PRK00142 101 DDDIDPLENVGTYLKPKEVNELLD-DPDVVFIDMRNDYEYEI-GHFE------NAIEPDIETFR--EFPPWVEENLDPLK 170 (314)
T ss_pred CCCCCccccCCcccCHHHHHHHhc-CCCeEEEECCCHHHHhc-CcCC------CCEeCCHHHhh--hhHHHHHHhcCCCC
Confidence 0 1111112235899999999996 67899999999999996 7776 89999987432 23333433334468
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCc--cCCCCCcccccchhhHHHh
Q 014870 206 NTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLSNLTETIS 273 (417)
Q Consensus 206 dk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv--~~~~k~~~~dl~rqvr~ia 273 (417)
+++||+||++|.||..++.+|+++||++||+|.||| .+|.+.=-+- .-.++.|+|| +|+...+.
T Consensus 171 dk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~w~G~~fVFD-~R~~~~~~ 236 (314)
T PRK00142 171 DKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGI---ITYGEDPETQGLLWDGKLYVFD-ERMAVPIN 236 (314)
T ss_pred cCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchH---HHHHHhhccccceeecCCcccc-CcccCCCC
Confidence 899999999999999999999999999999999999 8897642211 1234679999 77764333
No 6
>PLN02160 thiosulfate sulfurtransferase
Probab=99.79 E-value=4e-19 Score=157.35 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=89.0
Q ss_pred CCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCc--EEeccCC------CCCchhHHHHhhhhCCCCC
Q 014870 135 SWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP--VSIVYKG------DDKPGFLKKLSLKFKEPEN 206 (417)
Q Consensus 135 ~~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgA--vnIPl~~------~~~~~fl~eL~~~lk~~Kd 206 (417)
.+..+++.++.++++ + +.++||||++.||.. ||++ |+ +|||+.. +.++++..++... .+++
T Consensus 13 ~~~~i~~~e~~~~~~-~-~~~lIDVR~~~E~~~-ghIp------gA~~iniP~~~~~~~~~l~~~~~~~~~~~~--~~~~ 81 (136)
T PLN02160 13 EVVSVDVSQAKTLLQ-S-GHQYLDVRTQDEFRR-GHCE------AAKIVNIPYMLNTPQGRVKNQEFLEQVSSL--LNPA 81 (136)
T ss_pred eeeEeCHHHHHHHHh-C-CCEEEECCCHHHHhc-CCCC------CcceecccchhcCcccccCCHHHHHHHHhc--cCCC
Confidence 356899999999986 3 468999999999997 6665 78 8999732 1222344434321 2578
Q ss_pred CeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCC
Q 014870 207 TTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (417)
Q Consensus 207 k~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~ 258 (417)
++||+||++|.||..|++.|.++||++||++.||+ .+|+++|+|++...
T Consensus 82 ~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 130 (136)
T PLN02160 82 DDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY---LAWVDHSFPINQEE 130 (136)
T ss_pred CcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH---HHHhhCCCCccccc
Confidence 89999999999999999999999999999999999 99999999998753
No 7
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.79 E-value=7.2e-19 Score=147.91 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=82.9
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC
Q 014870 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (417)
Q Consensus 136 ~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (417)
...++++++.++++++.+.++||||++.||.. ||++ |++|||+.+ +.+.+. .+..+++++||+||++
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~-ghIp------gainip~~~-----l~~~~~-~l~~~~~~~ivv~C~~ 75 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGRRFDEYRK-MTIP------GSVSCPGAE-----LVLRVG-ELAPDPRTPIVVNCAG 75 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhc-CcCC------CceeCCHHH-----HHHHHH-hcCCCCCCeEEEECCC
Confidence 45799999999997444689999999999997 6665 899999862 322232 2233578999999999
Q ss_pred CchHHHHHHHHHHcCCCc-EEEcCCCCCChhhHHhCC
Q 014870 216 DGNSELVAELVTINGFKN-AYTIKDGAEGPRGWMNSG 251 (417)
Q Consensus 216 G~RS~~AA~~L~~~Gfkn-Vy~L~GGi~g~~aWk~aG 251 (417)
|.||..++..|+.+||++ |++|.||+ .+|+++|
T Consensus 76 G~rs~~a~~~L~~~G~~~~v~~l~gG~---~~W~~~g 109 (109)
T cd01533 76 RTRSIIGAQSLINAGLPNPVAALRNGT---QGWTLAG 109 (109)
T ss_pred CchHHHHHHHHHHCCCCcceeEecCCH---HHHHhcC
Confidence 999999999999999998 99999999 9999876
No 8
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.6e-18 Score=153.09 Aligned_cols=110 Identities=24% Similarity=0.328 Sum_probs=94.3
Q ss_pred CCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccC------CCCCchhHHHHhhhhCCCCCC
Q 014870 134 KSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYK------GDDKPGFLKKLSLKFKEPENT 207 (417)
Q Consensus 134 k~~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~------~~~~~~fl~eL~~~lk~~Kdk 207 (417)
+....++..++.++++ .++.++||||+|+||.+ ||++ .++|||+. .+.+++|.+++.. .+.+.|+
T Consensus 20 ~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~-gh~~------~siNiPy~~~~~~~~l~~~eF~kqvg~-~kp~~d~ 90 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQ-GHIP------ASINIPYMSRPGAGALKNPEFLKQVGS-SKPPHDK 90 (136)
T ss_pred CCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhc-cCCc------ceEeccccccccccccCCHHHHHHhcc-cCCCCCC
Confidence 3456899999999996 77799999999999998 5544 79999984 2457788888863 2345678
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCcc
Q 014870 208 TLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (417)
Q Consensus 208 ~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~ 255 (417)
.||++|++|.||..|.+.|..+||+||.++.||+ .+|.+.|+|.+
T Consensus 91 eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~---~~W~~k~~~~~ 135 (136)
T KOG1530|consen 91 EIIFGCASGVRSLKATKILVSAGYKNVGNYPGSY---LAWVDKGGPKK 135 (136)
T ss_pred cEEEEeccCcchhHHHHHHHHcCcccccccCccH---HHHHHccCCCC
Confidence 9999999999999999999999999999999999 99999998864
No 9
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.76 E-value=4.1e-18 Score=143.10 Aligned_cols=104 Identities=19% Similarity=0.303 Sum_probs=88.1
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC
Q 014870 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (417)
Q Consensus 136 ~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (417)
+..++++++.++++ +++.++||||++.||+. ||++ |++|+|+. .+.+.+. . .+++++|+|||.+
T Consensus 4 ~~~is~~el~~~l~-~~~~~ivDvR~~~e~~~-ghi~------gA~~ip~~-----~l~~~~~-~--~~~~~~ivv~c~~ 67 (108)
T PRK00162 4 FECINVEQAHQKLQ-EGGAVLVDIRDPQSFAM-GHAP------GAFHLTND-----SLGAFMR-Q--ADFDTPVMVMCYH 67 (108)
T ss_pred ccccCHHHHHHHHH-cCCCEEEEcCCHHHHhc-CCCC------CCeECCHH-----HHHHHHH-h--cCCCCCEEEEeCC
Confidence 45799999999996 56689999999999997 6665 89999975 2322232 1 2578999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCC
Q 014870 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (417)
Q Consensus 216 G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~ 258 (417)
|.||..++..|+..||++|+++.||+ .+|++.|+|+++.+
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~---~~w~~~~~~~~~~~ 107 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGF---EAWRRTFPAEVASG 107 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCH---HHHHhcCCCccCCC
Confidence 99999999999999999999999999 99999999998753
No 10
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.76 E-value=3.4e-18 Score=146.74 Aligned_cols=108 Identities=27% Similarity=0.432 Sum_probs=86.9
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhh-hcCCCCCCCCCCCcEEeccCCCCC----chhHHHHhhhhCCCCCCeEEEEe
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFR-QVGSPDVRGLGKRPVSIVYKGDDK----PGFLKKLSLKFKEPENTTLFILD 213 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~-~~G~p~lr~~~kgAvnIPl~~~~~----~~fl~eL~~~lk~~Kdk~IVV~C 213 (417)
||++++.++++++++.++||||++.||+ . ||++ |++|+|+..+.+ ..+...+.... +++++||+||
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~ivv~C 71 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFV-GGVP------DAVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVLLLC 71 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcc-cCCC------CceecchhhccccccCHHHHHHHHhhC--CCCCeEEEEc
Confidence 5889999999754689999999999999 7 5555 899999874321 23444444222 5789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCCCh---hhHHhCCCCcc
Q 014870 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLPWI 255 (417)
Q Consensus 214 ~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~---~aWk~aGLPv~ 255 (417)
++|.||..+++.|+++||++++++.|||+++ .||+...+||.
T Consensus 72 ~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~~~~~~~~~~ 116 (117)
T cd01522 72 RSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGWR 116 (117)
T ss_pred CCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCCcccccCCCC
Confidence 9999999999999999999999999999877 66666666663
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.75 E-value=4.4e-18 Score=140.64 Aligned_cols=96 Identities=21% Similarity=0.372 Sum_probs=77.5
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhH---HHHhhhhCCCCCCeEEEEeCC
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL---KKLSLKFKEPENTTLFILDKF 215 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl---~eL~~~lk~~Kdk~IVV~C~s 215 (417)
|+++++.++++++++.++||||++.||+. ||++ |++|+|+..... .+. ++.... .+++++||+||++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~-ghi~------ga~~ip~~~~~~-~~~~~~~~~~~~--~~~~~~ivv~C~~ 70 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYER-WKID------GENNTPYFDPYF-DFLEIEEDILDQ--LPDDQEVTVICAK 70 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhh-cccC------CCcccccccchH-HHHHhhHHHHhh--CCCCCeEEEEcCC
Confidence 58899999997556789999999999997 6665 899999874321 111 111111 2578999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHH
Q 014870 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 216 G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk 248 (417)
|.||..+++.|+++||+ +|+|+||+ .+|+
T Consensus 71 G~rs~~aa~~L~~~G~~-~~~l~GG~---~~W~ 99 (100)
T cd01523 71 EGSSQFVAELLAERGYD-VDYLAGGM---KAWS 99 (100)
T ss_pred CCcHHHHHHHHHHcCce-eEEeCCcH---Hhhc
Confidence 99999999999999999 99999999 9996
No 12
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.74 E-value=1.7e-17 Score=151.25 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=87.6
Q ss_pred CCCCCcccCHHHHHHHhcCCCCceEEEecChh----hhhhc--------CCCCCCCCCCCcEEeccCC---CCC---chh
Q 014870 132 KPKSWGVESARNAYAKLGDDASAQLLDIRAPV----EFRQV--------GSPDVRGLGKRPVSIVYKG---DDK---PGF 193 (417)
Q Consensus 132 ~~k~~g~ISa~ea~elLn~~~~avLIDVRt~~----Ef~~~--------G~p~lr~~~kgAvnIPl~~---~~~---~~f 193 (417)
..+++..|+++++.++++ +++.+|||||++. ||..+ +|++ ||+|+|+.. +.. +.|
T Consensus 31 ~~~~~~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIP------GAv~ip~~~~~~l~~~~~~~~ 103 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIP------GSLWLPNTGYGNLAPAWQAYF 103 (162)
T ss_pred ccCCccccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCC------CcEEecccCCCCCCCchhHHH
Confidence 345567899999999996 6779999999876 56542 2565 899999632 111 123
Q ss_pred HHHHhhhhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCc
Q 014870 194 LKKLSLKFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (417)
Q Consensus 194 l~eL~~~lk~~Kdk~IVV~C~sG~-RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv 254 (417)
.+.+.+....++|++||+||++|. ||..++..|+++||++||+|.||+ .+|+++|+|+
T Consensus 104 ~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~---~aW~~aG~Pv 162 (162)
T TIGR03865 104 RRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT---DGWQAAGLPL 162 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH---HHHHHcCCCC
Confidence 344432112368999999999997 899999999999999999999999 9999999995
No 13
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.73 E-value=1.5e-17 Score=136.99 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=82.4
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCc
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (417)
.++++++.++++ ++ .++||||+++||.. ||++ |++|+|+..+. +.. ...+++++||+||++|.
T Consensus 3 ~i~~~el~~~~~-~~-~~liDvR~~~e~~~-~hi~------ga~~ip~~~~~-----~~~---~~~~~~~~iv~~c~~g~ 65 (99)
T cd01527 3 TISPNDACELLA-QG-AVLVDIREPDEYLR-ERIP------GARLVPLSQLE-----SEG---LPLVGANAIIFHCRSGM 65 (99)
T ss_pred ccCHHHHHHHHH-CC-CEEEECCCHHHHHh-CcCC------CCEECChhHhc-----ccc---cCCCCCCcEEEEeCCCc
Confidence 589999999986 43 89999999999997 6766 89999986422 111 12367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCc
Q 014870 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (417)
Q Consensus 218 RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv 254 (417)
||..++..|+++||.+|+++.||+ .+|+..|+|+
T Consensus 66 ~s~~~~~~L~~~g~~~v~~l~gG~---~~W~~~~~~~ 99 (99)
T cd01527 66 RTQQNAERLAAISAGEAYVLEGGL---DAWKAAGLPV 99 (99)
T ss_pred hHHHHHHHHHHcCCccEEEeeCCH---HHHHHCcCCC
Confidence 999999999999999999999999 9999999985
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.72 E-value=2e-17 Score=135.99 Aligned_cols=93 Identities=13% Similarity=0.212 Sum_probs=75.5
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCc
Q 014870 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (417)
Q Consensus 139 ISa~ea~elLn~~-~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (417)
||+.++.++++++ ++.++||||++.||+. ||++ |++|+|+.. +..... .+...++++||+||++|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghip------ga~~ip~~~-----l~~~~~-~~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEA-GHLP------GFRHTPGGQ-----LVQETD-HFAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHh-CCCC------CcEeCCHHH-----HHHHHH-HhcccCCCeEEEECCCCC
Confidence 5889999999744 3578999999999997 6665 899999752 222221 122245789999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHH
Q 014870 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 218 RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk 248 (417)
||..++..|+.+||+ |+++.||+ .+|+
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~---~~W~ 94 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGL---AAAL 94 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcH---HHhc
Confidence 999999999999999 99999999 9996
No 15
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.3e-17 Score=134.92 Aligned_cols=96 Identities=25% Similarity=0.416 Sum_probs=78.0
Q ss_pred HHhcCCCCceEEEecChhhhhhcCCCCCCCCCCC-cEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCchHHHHHH
Q 014870 146 AKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR-PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAE 224 (417)
Q Consensus 146 elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kg-AvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA~ 224 (417)
.++...++.++||||++.||+..|+| + ++|||+.++. .+...+. .+++++||+||++|.||..|++
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~-------~~~~~ip~~~~~--~~~~~~~----~~~~~~ivv~C~~G~rS~~aa~ 79 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIP-------GAAINIPLSELK--AAENLLE----LPDDDPIVVYCASGVRSAAAAA 79 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCC-------cceeeeecccch--hhhcccc----cCCCCeEEEEeCCCCChHHHHH
Confidence 33434678999999999999985666 6 9999987532 1111110 2579999999999999999999
Q ss_pred HHHHcCCCcEEEcCCCCCChhhHHhCCCCccCC
Q 014870 225 LVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (417)
Q Consensus 225 ~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~ 257 (417)
.|+++||++++++.||+ .+|+..++|+...
T Consensus 80 ~L~~~G~~~~~~l~gG~---~~w~~~~~~~~~~ 109 (110)
T COG0607 80 ALKLAGFTNVYNLDGGI---DAWKGAGLPLVRG 109 (110)
T ss_pred HHHHcCCccccccCCcH---HHHHhcCCCcccC
Confidence 99999999999999999 9999999998764
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.68 E-value=1e-16 Score=138.04 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=84.5
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhh----hhCCCCCCeEEEE
Q 014870 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL----KFKEPENTTLFIL 212 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~----~lk~~Kdk~IVV~ 212 (417)
..|+++++.+++++++++++||||++.||.. ||++ |++|||+.++. .....+.. ....+++++||+|
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~~~-~hIp------gai~ip~~~~~--~~~~~~~~~~~~~~~~~~~~~ivv~ 78 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHFEI-CRLP------EAINIPLSELL--SKAAELKSLQELPLDNDKDSPIYVV 78 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHhhc-ccCC------CCeEccHHHHh--hhhhhhhhhhhcccccCCCCcEEEE
Confidence 5799999999997546789999999999997 5555 89999986421 11112210 1112678999999
Q ss_pred eCCCchHHHHHHHHHHcCC-CcEEEcCCCCCChhhHHhCCCCc
Q 014870 213 DKFDGNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNSGLPW 254 (417)
Q Consensus 213 C~sG~RS~~AA~~L~~~Gf-knVy~L~GGi~g~~aWk~aGLPv 254 (417)
|++|.||..+++.|+..|| ++|+++.||+ .+|+....+.
T Consensus 79 C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~---~~W~~~~~~~ 118 (122)
T cd01526 79 CRRGNDSQTAVRKLKELGLERFVRDIIGGL---KAWADKVDPT 118 (122)
T ss_pred CCCCCcHHHHHHHHHHcCCccceeeecchH---HHHHHHhCcc
Confidence 9999999999999999999 7999999999 9999876654
No 17
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.68 E-value=2e-16 Score=131.15 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=78.4
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCc
Q 014870 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (417)
Q Consensus 139 ISa~ea~elLn~~-~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (417)
|++.++.++++.. ++.++||||++.||+. +|++ |++|+|+.++. ++.+.+.. .+++++||+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~-~hI~------ga~~ip~~~~~--~~~~~~~~---~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEI-AFLP------GFLHLPMSEIP--ERSKELDS---DNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhc-CcCC------CCEecCHHHHH--HHHHHhcc---cCCCCeEEEEeCCCc
Confidence 7899999999743 3689999999999997 5665 89999986321 23333321 146899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHh
Q 014870 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 218 RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~ 249 (417)
||..++..|.+.||++|+++.||+ .+|++
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~---~~w~~ 98 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGI---DAWSL 98 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCH---HHHhh
Confidence 999999999999999999999999 99965
No 18
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.67 E-value=1.1e-16 Score=132.61 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=76.8
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCC-chhHHHHh--hhhCCCCCCeEEEEeC
Q 014870 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-PGFLKKLS--LKFKEPENTTLFILDK 214 (417)
Q Consensus 139 ISa~ea~elLn~~-~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~-~~fl~eL~--~~lk~~Kdk~IVV~C~ 214 (417)
||++++.+++.++ ++.++||||++.||+. ||++ |++|+|+..... ......+. ..+...++++||+||+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~ 73 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRR-GHIE------GSINIPFSSVFLKEGELEQLPTVPRLENYKGKIIVIVSH 73 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhC-CccC------CCEeCCHHHhcccccccccccchHHHHhhcCCeEEEEeC
Confidence 6889999999633 3689999999999997 6665 899999864211 01111111 1112235889999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHH
Q 014870 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 215 sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk 248 (417)
+|.||..++..|+..||++||+|.||+ .+|+
T Consensus 74 ~g~~s~~~a~~L~~~G~~~v~~l~GG~---~a~~ 104 (105)
T cd01525 74 SHKHAALFAAFLVKCGVPRVCILDGGI---NALK 104 (105)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEeCcH---HHhc
Confidence 999999999999999999999999999 9996
No 19
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.67 E-value=3.1e-16 Score=127.55 Aligned_cols=93 Identities=15% Similarity=0.252 Sum_probs=77.4
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhc-CCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCc
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQV-GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~~-G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (417)
|++.++.++++++.+.++||||++.||+.. ||++ |++|+|+.+ +.+.+. . .+++++|||||++|.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~------ga~~ip~~~-----~~~~~~-~--~~~~~~ivv~c~~g~ 67 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIP------GAIHLDEDS-----LDDWLG-D--LDRDRPVVVYCYHGN 67 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCC------CCeeCCHHH-----HHHHHh-h--cCCCCCEEEEeCCCC
Confidence 788999999864467999999999999861 5665 899999862 222222 1 257899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHH
Q 014870 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 218 RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk 248 (417)
||..++..|+..||++|++++||+ .+|+
T Consensus 68 ~s~~a~~~l~~~G~~~v~~l~gG~---~~w~ 95 (96)
T cd01444 68 SSAQLAQALREAGFTDVRSLAGGF---EAWR 95 (96)
T ss_pred hHHHHHHHHHHcCCceEEEcCCCH---HHhc
Confidence 999999999999999999999999 9996
No 20
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.67 E-value=2.6e-16 Score=129.32 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=78.9
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHh--hhhCCCCCCeEEEEeCCC
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDKFD 216 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~--~~lk~~Kdk~IVV~C~sG 216 (417)
|+++++.++++ +++.++||||++.||...||++ |++|+|+..+. .+.+... .....+++++||+||.+|
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIp------ga~~ip~~~~~--~~~~~~~~~~~~~~~~~~~ivv~c~~g 71 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIP------GAFHAPRGMLE--FWADPDSPYHKPAFAEDKPFVFYCASG 71 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCC------CcEEcccchhh--hhcCccccccccCCCCCCeEEEEcCCC
Confidence 57899999996 5678999999999995457776 89999975321 0110000 000125789999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCC
Q 014870 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (417)
Q Consensus 217 ~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aG 251 (417)
.||..++..|+..||++|+++.||+ .+|..+|
T Consensus 72 ~~s~~~~~~l~~~G~~~v~~l~Gg~---~~w~~~g 103 (103)
T cd01447 72 WRSALAGKTLQDMGLKPVYNIEGGF---KDWKEAG 103 (103)
T ss_pred CcHHHHHHHHHHcChHHhEeecCcH---HHHhhcC
Confidence 9999999999999999999999999 9998765
No 21
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.67 E-value=2.7e-16 Score=130.34 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=77.4
Q ss_pred CHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCC------chhHHHHhhhhCCCCCCeEEEEe
Q 014870 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK------PGFLKKLSLKFKEPENTTLFILD 213 (417)
Q Consensus 140 Sa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~------~~fl~eL~~~lk~~Kdk~IVV~C 213 (417)
|++++.++++.+++.++||||++.||.. ||++ |++|+|+.++.+ .+|.+.+. ....+++++||+||
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~c 73 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKT-GKIP------GAINIPLSSLPDALALSEEEFEKKYG-FPKPSKDKELIFYC 73 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhc-CcCC------CcEEechHHhhhhhCCCHHHHHHHhc-ccCCCCCCeEEEEC
Confidence 6778888884256799999999999996 6665 899999874321 12222221 11235789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHh
Q 014870 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 214 ~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~ 249 (417)
++|.||..++..|+.+||++|+++.||+ .+|.+
T Consensus 74 ~~g~~s~~~~~~l~~~G~~~v~~~~Gg~---~~W~~ 106 (106)
T cd01519 74 KAGVRSKAAAELARSLGYENVGNYPGSW---LDWAA 106 (106)
T ss_pred CCcHHHHHHHHHHHHcCCccceecCCcH---HHHcC
Confidence 9999999999999999999999999999 99963
No 22
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.67 E-value=3.7e-16 Score=132.04 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=82.1
Q ss_pred cccCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC
Q 014870 137 GVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (417)
Q Consensus 137 g~ISa~ea~elLn~~-~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (417)
..++++++.+++.++ ++.++||||++.||.. ||++ |++|+|+..+.. ..+. ..+++++||+||++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~l~~----~~~~---~i~~~~~vvvyc~~ 73 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYAR-GHVP------GAINLPHREICE----NATA---KLDKEKLFVVYCDG 73 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhc-CCCC------CCEeCCHHHhhh----Hhhh---cCCCCCeEEEEECC
Confidence 579999999999644 4689999999999997 6665 899999763210 1111 12678999999998
Q ss_pred Cc--hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCc
Q 014870 216 DG--NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (417)
Q Consensus 216 G~--RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv 254 (417)
|. +|..++..|+++||+ +++|.||+ .+|+.+|+|+
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~---~~W~~~g~~~ 110 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGL---DWWKREGYAT 110 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCH---HHHHHCCCCC
Confidence 84 899999999999995 99999999 9999999985
No 23
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.65 E-value=3.4e-16 Score=135.72 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=77.6
Q ss_pred ccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhh---hhCCCCCCeE
Q 014870 138 VESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL---KFKEPENTTL 209 (417)
Q Consensus 138 ~ISa~ea~elLn~~-----~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~---~lk~~Kdk~I 209 (417)
.|+++++.++++++ ++.++||||++.||+. ||++ ||+|||+.+ .+.+.+.. ....+++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghI~------gA~~ip~~~----~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNG-GHIK------GAVNLSTKD----ELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhC-CcCC------CCEeCCcHH----HHHHHHHHhhcccccCCCCEE
Confidence 58999999999743 4789999999999997 6665 899999752 12222211 1123689999
Q ss_pred EEEeC-CCchHHHHHHHHHHc------------CCCcEEEcCCCCCChhhHH
Q 014870 210 FILDK-FDGNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 210 VV~C~-sG~RS~~AA~~L~~~------------GfknVy~L~GGi~g~~aWk 248 (417)
|+||. +|.||..++..|+++ ||++||+|+||| .+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~---~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGY---KNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChh---Hhhc
Confidence 99997 999999999999985 999999999999 8884
No 24
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.65 E-value=1e-15 Score=130.62 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=80.6
Q ss_pred cCHHHHHHHhcCCCCceEEEecCh-------hhhhhcCCCCCCCCCCCcEEeccCCCCC------------chhHHHHhh
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAP-------VEFRQVGSPDVRGLGKRPVSIVYKGDDK------------PGFLKKLSL 199 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~-------~Ef~~~G~p~lr~~~kgAvnIPl~~~~~------------~~fl~eL~~ 199 (417)
++++++.++++ +++.++||||++ .||+. ||++ |++|+|+..... .++.+.+.
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~-ghI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLE-GHIP------GAVFFDLDEDLDDKSPGPHMLPSPEEFAELLG- 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhh-CCCC------CCEEcChhhccccCCCCCCCCCCHHHHHHHHH-
Confidence 68899999996 567899999999 99987 6665 899999764321 11222221
Q ss_pred hhCCCCCCeEEEEeCC-CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCC
Q 014870 200 KFKEPENTTLFILDKF-DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (417)
Q Consensus 200 ~lk~~Kdk~IVV~C~s-G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aG 251 (417)
....+++++||+||++ |.+|..++..|+.+||++|+++.||+ .+|+++|
T Consensus 73 ~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g 122 (122)
T cd01448 73 SLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGL---QAWKAEG 122 (122)
T ss_pred HcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH---HHHHhCc
Confidence 2234679999999999 58999999999999999999999999 9999875
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.64 E-value=9.3e-16 Score=122.37 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=73.3
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCch-------hHHHHhhhhCCCCCCeEEEEeCCCchHHHHH
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPG-------FLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~-------fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA 223 (417)
+++.++||||++.||.. ||++ |++|+|+....... +.+.+ ......++++||+||.+|.|+..++
T Consensus 2 ~~~~~ivDvR~~~e~~~-~hi~------ga~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv~~c~~g~~a~~~~ 73 (100)
T smart00450 2 DEKVVLLDVRSPEEYEG-GHIP------GAVNIPLSELLDRRGELDILEFEELL-KRLGLDKDKPVVVYCRSGNRSAKAA 73 (100)
T ss_pred CCCEEEEECCCHHHhcc-CCCC------CceeCCHHHhccCCCCcCHHHHHHHH-HHcCCCCCCeEEEEeCCCcHHHHHH
Confidence 46789999999999997 6665 89999986422110 11111 1223467899999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCCChhhHHhCCCC
Q 014870 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253 (417)
Q Consensus 224 ~~L~~~GfknVy~L~GGi~g~~aWk~aGLP 253 (417)
..|++.||++||+|.||+ .+|++.|+|
T Consensus 74 ~~l~~~G~~~v~~l~GG~---~~w~~~~~~ 100 (100)
T smart00450 74 WLLRELGFKNVYLLDGGY---KEWSAAGPP 100 (100)
T ss_pred HHHHHcCCCceEEecCCH---HHHHhcCCC
Confidence 999999999999999999 999999875
No 26
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.63 E-value=1.3e-15 Score=132.46 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=75.5
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchh------------------------H
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGF------------------------L 194 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~f------------------------l 194 (417)
||++++.++++ ++.++||||++.||.. ||++ ||+|||+.......+ +
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~-ghIp------gAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFE-GHLP------GAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKL 71 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhcc-CcCC------CcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhH
Confidence 68899999985 4689999999999997 6665 899999863211000 1
Q ss_pred HHHhhhh---CCCCCCeEEEEeC-CCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHh
Q 014870 195 KKLSLKF---KEPENTTLFILDK-FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 195 ~eL~~~l---k~~Kdk~IVV~C~-sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~ 249 (417)
+++..++ ..+++++||+||+ +|.||..++..|+.+|| +|++|.||+ .+|+.
T Consensus 72 ~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~---~aw~~ 126 (128)
T cd01520 72 KRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGY---KAYRK 126 (128)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcH---HHHHh
Confidence 1111111 2468999999997 68999999999999999 599999999 99975
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.62 E-value=8.7e-16 Score=129.84 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=78.6
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhh----------cCCCCCCCCCCCcEEeccCCCC-------CchhHHHHhhhh
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ----------VGSPDVRGLGKRPVSIVYKGDD-------KPGFLKKLSLKF 201 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~----------~G~p~lr~~~kgAvnIPl~~~~-------~~~fl~eL~~~l 201 (417)
++++++.++++ +++.++||||++.||.. .||++ |++|+|+.... +++.++++...+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIp------gA~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 73 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIP------GAVNIPWTSLLDEDGTFKSPEELRALFAAL 73 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCC------CCcccChHHhcCCCCCcCCHHHHHHHHHHc
Confidence 57889999886 56789999999999974 16665 89999986422 111222221222
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHh
Q 014870 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 202 k~~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~ 249 (417)
...++++||+||++|.||..++..|+.+||++++++.||+ .+|++
T Consensus 74 ~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~---~~W~~ 118 (118)
T cd01449 74 GITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW---SEWGS 118 (118)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH---HHhcC
Confidence 3467899999999999999999999999999999999999 99963
No 28
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.62 E-value=1.3e-15 Score=129.07 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=77.6
Q ss_pred cccCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeC-
Q 014870 137 GVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK- 214 (417)
Q Consensus 137 g~ISa~ea~elLn~~-~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~- 214 (417)
..|+++++.++++++ ++.++||||++ ||.. ||++ |++|+|+..+. ....++......+++++||+||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~-~hi~------gA~~ip~~~l~--~~~~~~~~~~~~~~~~~iv~yC~~ 71 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAG-GHIK------GSWHYPSTRFK--AQLNQLVQLLSGSKKDTVVFHCAL 71 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCC-CcCC------CCEecCHHHHh--hCHHHHHHHHhcCCCCeEEEEeec
Confidence 358999999998644 56789999999 9987 6665 89999987422 12233322211256789999998
Q ss_pred CCchHHHHHHHHHH--------cCCCcEEEcCCCCCChhhHHhC
Q 014870 215 FDGNSELVAELVTI--------NGFKNAYTIKDGAEGPRGWMNS 250 (417)
Q Consensus 215 sG~RS~~AA~~L~~--------~GfknVy~L~GGi~g~~aWk~a 250 (417)
+|.||..+++.|.+ .||++||+|.||+ .+|+++
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~---~~w~~~ 112 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGF---NAWESS 112 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChH---HHHHhh
Confidence 77899999998765 5999999999999 999864
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.62 E-value=1.8e-15 Score=135.48 Aligned_cols=100 Identities=16% Similarity=0.263 Sum_probs=81.2
Q ss_pred HHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCchHHHHH
Q 014870 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (417)
Q Consensus 144 a~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA 223 (417)
+.+++..+.+.++||||++.||+. ||++ |++++|.. .+.+.+. .+ +++++|||||.+|.+|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~-gHIp------gAi~~~~~-----~l~~~l~-~l--~~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVK-RHIP------GAWWVLRA-----QLAQALE-KL--PAAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHc-CCCC------CceeCCHH-----HHHHHHH-hc--CCCCCEEEEeCCChHHHHHH
Confidence 345665455689999999999997 6665 89999854 2333333 22 45789999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCCCCc
Q 014870 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKAL 261 (417)
Q Consensus 224 ~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~k~~ 261 (417)
..|+..||++|++|.||+ .+|+++|+|+..+.+..
T Consensus 67 ~~L~~~G~~~v~~L~GG~---~aW~~~g~pl~~~~~~~ 101 (145)
T cd01535 67 ADLAALTVKPVFVLEGGT---AAWIAAGLPVESGETRL 101 (145)
T ss_pred HHHHHcCCcCeEEecCcH---HHHHHCCCCcccCCCCC
Confidence 999999999999999999 99999999999875544
No 30
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.61 E-value=2.1e-15 Score=123.86 Aligned_cols=85 Identities=16% Similarity=0.320 Sum_probs=67.7
Q ss_pred HhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhH-HHHhhhhCCCCCCeEEEEeCCCch--HHHHH
Q 014870 147 KLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL-KKLSLKFKEPENTTLFILDKFDGN--SELVA 223 (417)
Q Consensus 147 lLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl-~eL~~~lk~~Kdk~IVV~C~sG~R--S~~AA 223 (417)
+++ +++.++||||++.||.. ||++ |++|+|+.. +. .... .+ .+++++|||||++|.| |..++
T Consensus 5 ~~~-~~~~~liDvR~~~e~~~-~hi~------ga~~ip~~~-----~~~~~~~-~~-~~~~~~ivl~c~~G~~~~s~~aa 69 (92)
T cd01532 5 LLA-REEIALIDVREEDPFAQ-SHPL------WAANLPLSR-----LELDAWV-RI-PRRDTPIVVYGEGGGEDLAPRAA 69 (92)
T ss_pred hhc-CCCeEEEECCCHHHHhh-CCcc------cCeeCCHHH-----HHhhhHh-hC-CCCCCeEEEEeCCCCchHHHHHH
Confidence 443 67899999999999998 6665 899999752 11 1111 11 2368999999999988 68999
Q ss_pred HHHHHcCCCcEEEcCCCCCChhhHHh
Q 014870 224 ELVTINGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 224 ~~L~~~GfknVy~L~GGi~g~~aWk~ 249 (417)
+.|+++||++|++++||+ .+|++
T Consensus 70 ~~L~~~G~~~v~~l~GG~---~~W~~ 92 (92)
T cd01532 70 RRLSELGYTDVALLEGGL---QGWRA 92 (92)
T ss_pred HHHHHcCccCEEEccCCH---HHHcC
Confidence 999999999999999999 99964
No 31
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.60 E-value=2.4e-15 Score=123.64 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhh-CCCCCCeEEEEeCCCchHHHHHHHHHHc
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF-KEPENTTLFILDKFDGNSELVAELVTIN 229 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~l-k~~Kdk~IVV~C~sG~RS~~AA~~L~~~ 229 (417)
+++.++||||++.||+. ||++ |++|+|+..+.. ..+.++. + ..+++++||+||.+|.||..++..|+..
T Consensus 10 ~~~~~iiDvR~~~~~~~-~hIp------gA~~ip~~~~~~--~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~ 79 (96)
T cd01529 10 EPGTALLDVRAEDEYAA-GHLP------GKRSIPGAALVL--RSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLAL 79 (96)
T ss_pred CCCeEEEeCCCHHHHcC-CCCC------CcEeCCHHHhcC--CHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 56789999999999997 6665 899999753211 1122211 1 1367899999999999999999999999
Q ss_pred CCCcEEEcCCCCCChhhHHh
Q 014870 230 GFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 230 GfknVy~L~GGi~g~~aWk~ 249 (417)
||++|+++.||+ .+|++
T Consensus 80 G~~~v~~l~GG~---~~W~~ 96 (96)
T cd01529 80 GGKPVALLDGGT---SAWVA 96 (96)
T ss_pred CCCCEEEeCCCH---HHhcC
Confidence 999999999999 99963
No 32
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.60 E-value=3.5e-15 Score=151.91 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=87.6
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC
Q 014870 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (417)
Q Consensus 136 ~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (417)
+..|+++++.++++ + +.++||||+++||+. ||++ |++|+|+.. +.+.+. .+..+++++||+||++
T Consensus 2 v~~is~~el~~~l~-~-~~~ivDvR~~~e~~~-ghIp------gAi~ip~~~-----l~~~~~-~~~~~~~~~IvvyC~~ 66 (376)
T PRK08762 2 IREISPAEARARAA-Q-GAVLIDVREAHERAS-GQAE------GALRIPRGF-----LELRIE-THLPDRDREIVLICAS 66 (376)
T ss_pred CceeCHHHHHHHHh-C-CCEEEECCCHHHHhC-CcCC------CCEECCHHH-----HHHHHh-hhcCCCCCeEEEEcCC
Confidence 35799999999985 3 489999999999997 6665 899999752 222222 1112578999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCC
Q 014870 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (417)
Q Consensus 216 G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~ 258 (417)
|.||..|++.|+.+||++|+++.||+ .+|+++|+|+..+.
T Consensus 67 G~rs~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 106 (376)
T PRK08762 67 GTRSAHAAATLRELGYTRVASVAGGF---SAWKDAGLPLERPR 106 (376)
T ss_pred CcHHHHHHHHHHHcCCCceEeecCcH---HHHHhcCCcccccc
Confidence 99999999999999999999999999 99999999998764
No 33
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.59 E-value=4.8e-15 Score=120.63 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=73.6
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCch
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN 218 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~R 218 (417)
++++++.+++ +++.++||+|+++||.. ||++ |++|+|+.. +.+.+. . .+++++||+||++|.+
T Consensus 1 ~~~~e~~~~~--~~~~~iiD~R~~~~~~~-~hip------gA~~ip~~~-----~~~~~~-~--~~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYR--ADGVTLIDVRTPQEFEK-GHIK------GAINIPLDE-----LRDRLN-E--LPKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHHh--cCCCEEEECCCHHHHhc-CCCC------CCEeCCHHH-----HHHHHH-h--cCCCCcEEEEcCCChh
Confidence 4678888888 35678999999999997 6665 899999752 322222 1 2567899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEcCCCCCChhhHH
Q 014870 219 SELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 219 S~~AA~~L~~~GfknVy~L~GGi~g~~aWk 248 (417)
+..+++.|++.|| ++++|.||+ .+|+
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~---~~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGY---KTYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCH---HHhc
Confidence 9999999999999 999999999 9996
No 34
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.59 E-value=4.1e-15 Score=122.57 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=77.2
Q ss_pred CHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCC---CCchhHHHHh---hh--hCCCCCCeEEE
Q 014870 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD---DKPGFLKKLS---LK--FKEPENTTLFI 211 (417)
Q Consensus 140 Sa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~---~~~~fl~eL~---~~--lk~~Kdk~IVV 211 (417)
||+|+.+++ .+++.+|||||++.||.. ||++ |++|||+... ....+.+.+. .. ...+++++||+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~-~hI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYER-GHIP------GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHH-SBET------TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHc-CCCC------CCcccccccccccccccccccccccccccccccccccccee
Confidence 689999999 588999999999999997 6665 8999998321 0111111111 11 12467889999
Q ss_pred EeCCCchHHHHHHH-----HHHcCCCcEEEcCCCCCChhhHHhC
Q 014870 212 LDKFDGNSELVAEL-----VTINGFKNAYTIKDGAEGPRGWMNS 250 (417)
Q Consensus 212 ~C~sG~RS~~AA~~-----L~~~GfknVy~L~GGi~g~~aWk~a 250 (417)
||++|.++..++.. |.++||++|++|.||+ .+|+++
T Consensus 73 yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~---~~w~~~ 113 (113)
T PF00581_consen 73 YCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGF---EAWKAE 113 (113)
T ss_dssp EESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHH---HHHHHH
T ss_pred eeecccccchhHHHHHHHHHHHcCCCCEEEecChH---HHHhcC
Confidence 99999999998888 8999999999999999 999863
No 35
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.57 E-value=5.6e-15 Score=125.39 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=73.6
Q ss_pred ccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEE
Q 014870 138 VESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFIL 212 (417)
Q Consensus 138 ~ISa~ea~elLn~~-----~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~ 212 (417)
.|+++++.++++++ ++.++||||++ ||.. ||++ |++|+|+..+. ....++...+...++++||+|
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~-ghip------gAi~ip~~~~~--~~~~~~~~~~~~~~~~~iv~~ 72 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEG-GHIK------GSINLPAQSCY--QTLPQVYALFSLAGVKLAIFY 72 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCC-Cccc------CceecchhHHH--HHHHHHHHHhhhcCCCEEEEE
Confidence 68999999999744 46889999999 9997 6666 89999986421 122222222223467899999
Q ss_pred eCC-CchHHHHHHHHHH----cCC--CcEEEcCCCCCChhhHH
Q 014870 213 DKF-DGNSELVAELVTI----NGF--KNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 213 C~s-G~RS~~AA~~L~~----~Gf--knVy~L~GGi~g~~aWk 248 (417)
|.+ |.||..++++|.+ .|| .++|+|.||+ .+|+
T Consensus 73 C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~---~~w~ 112 (113)
T cd01443 73 CGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGI---KAWY 112 (113)
T ss_pred CCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChh---hhhc
Confidence 997 6899988877654 465 7899999999 9995
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.54 E-value=1.2e-14 Score=114.95 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=71.0
Q ss_pred HHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCchHHHHH
Q 014870 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (417)
Q Consensus 144 a~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA 223 (417)
+.++++ +++.++||+|++.||+. ||++ |++|+|+.... ... .....+++++||+||.+|.++..++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~-~~i~------ga~~~~~~~~~-----~~~-~~~~~~~~~~vv~~c~~~~~a~~~~ 67 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAA-GHIP------GAINIPLSELE-----ERA-ALLELDKDKPIVVYCRSGNRSARAA 67 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhc-cccC------CCEecchHHHh-----hHH-HhhccCCCCeEEEEeCCCchHHHHH
Confidence 445665 77899999999999997 6665 89999986321 110 0112368899999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCCChhhHH
Q 014870 224 ELVTINGFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 224 ~~L~~~GfknVy~L~GGi~g~~aWk 248 (417)
..|++.||.+++++.||+ .+|+
T Consensus 68 ~~l~~~G~~~v~~l~gG~---~~w~ 89 (89)
T cd00158 68 KLLRKAGGTNVYNLEGGM---LAWK 89 (89)
T ss_pred HHHHHhCcccEEEecCCh---hhcC
Confidence 999999999999999999 8884
No 37
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.53 E-value=4.6e-14 Score=119.58 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=66.0
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHcC
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTING 230 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA~~L~~~G 230 (417)
..+..+||||+++||.. ||++ |++|||+.+ +.+.+. .+..+++++||+||++|.||..++..|+++|
T Consensus 16 ~~~~~lIDvR~~~ef~~-ghIp------gAinip~~~-----l~~~l~-~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G 82 (101)
T TIGR02981 16 FAAEHWIDVRIPEQYQQ-EHIQ------GAINIPLKE-----IKEHIA-TAVPDKNDTVKLYCNAGRQSGMAKDILLDMG 82 (101)
T ss_pred ccCCEEEECCCHHHHhc-CCCC------CCEECCHHH-----HHHHHH-HhCCCCCCeEEEEeCCCHHHHHHHHHHHHcC
Confidence 34678999999999997 6665 899999852 323332 2223578899999999999999999999999
Q ss_pred CCcEEEcCCCCCChhhHH
Q 014870 231 FKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 231 fknVy~L~GGi~g~~aWk 248 (417)
|++++++ ||+ .+|.
T Consensus 83 ~~~v~~~-GG~---~~~~ 96 (101)
T TIGR02981 83 YTHAENA-GGI---KDIA 96 (101)
T ss_pred CCeEEec-CCH---HHhh
Confidence 9999986 999 9996
No 38
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.52 E-value=3.3e-14 Score=145.96 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=84.2
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC
Q 014870 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (417)
Q Consensus 136 ~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s 215 (417)
+..++++++.++++++++.++||||++.||+. ||++ |++|+|+.++... ..+. . .+++++||+||++
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~-ghIp------GAinip~~~l~~~---~~~~-~--l~~d~~iVvyC~~ 352 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDI-VHIP------GAQLIPKSEILSG---EALA-K--LPQDRTIVLYCKT 352 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhc-CCCC------CCEEcChHHhcch---hHHh-h--CCCCCcEEEEcCC
Confidence 35799999999997555678999999999997 6665 8999998743211 1222 1 2578999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCC
Q 014870 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253 (417)
Q Consensus 216 G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLP 253 (417)
|.||..++..|++.||++|++++||+ .+|++++.|
T Consensus 353 G~rS~~aa~~L~~~G~~~V~~L~GG~---~~W~~~~~~ 387 (392)
T PRK07878 353 GVRSAEALAALKKAGFSDAVHLQGGV---VAWAKQVDP 387 (392)
T ss_pred ChHHHHHHHHHHHcCCCcEEEecCcH---HHHHHhcCC
Confidence 99999999999999999999999999 999988765
No 39
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.49 E-value=1e-13 Score=118.22 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=65.9
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHcC
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTING 230 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA~~L~~~G 230 (417)
..+-++||||+++||+. ||++ |++|+|+.+ +.+.+. .+..+++++||+||++|.||..++..|.++|
T Consensus 18 ~~~~~lIDvR~~~ef~~-ghIp------GAiniP~~~-----l~~~l~-~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G 84 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQ-EHVQ------GAINIPLKE-----VKERIA-TAVPDKNDTVKLYCNAGRQSGQAKEILSEMG 84 (104)
T ss_pred cCCCEEEECCCHHHHhc-CCCC------ccEECCHHH-----HHHHHH-hcCCCCCCeEEEEeCCChHHHHHHHHHHHcC
Confidence 45567999999999997 5655 899999752 333333 2333567899999999999999999999999
Q ss_pred CCcEEEcCCCCCChhhHH
Q 014870 231 FKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 231 fknVy~L~GGi~g~~aWk 248 (417)
|+++++ .||+ .+|.
T Consensus 85 ~~~v~~-~GG~---~~~~ 98 (104)
T PRK10287 85 YTHAEN-AGGL---KDIA 98 (104)
T ss_pred CCeEEe-cCCH---HHHh
Confidence 999988 6999 8995
No 40
>PRK07411 hypothetical protein; Validated
Probab=99.47 E-value=1.3e-13 Score=141.72 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=83.3
Q ss_pred CcccCHHHHHHHhcCCC-CceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeC
Q 014870 136 WGVESARNAYAKLGDDA-SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK 214 (417)
Q Consensus 136 ~g~ISa~ea~elLn~~~-~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~ 214 (417)
...|+++++.++++++. +.++||||++.||+. ||++ |++|||+.++......+++.. ..++++||+||+
T Consensus 281 ~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~-ghIp------GAiniP~~~l~~~~~~~~l~~---l~~d~~IVvyC~ 350 (390)
T PRK07411 281 IPEMTVTELKALLDSGADDFVLIDVRNPNEYEI-ARIP------GSVLVPLPDIENGPGVEKVKE---LLNGHRLIAHCK 350 (390)
T ss_pred cCccCHHHHHHHHhCCCCCeEEEECCCHHHhcc-CcCC------CCEEccHHHhhcccchHHHhh---cCCCCeEEEECC
Confidence 35799999999996443 579999999999997 6665 899999864322111223331 257899999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCc
Q 014870 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (417)
Q Consensus 215 sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv 254 (417)
+|.||..++..|+++||++ +++.||+ .+|++...|.
T Consensus 351 ~G~RS~~aa~~L~~~G~~~-~~l~GG~---~~W~~~~~p~ 386 (390)
T PRK07411 351 MGGRSAKALGILKEAGIEG-TNVKGGI---TAWSREVDPS 386 (390)
T ss_pred CCHHHHHHHHHHHHcCCCe-EEecchH---HHHHHhcCCC
Confidence 9999999999999999985 6899999 9999887665
No 41
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.45 E-value=1.8e-13 Score=139.79 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=72.2
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCc-hhHHHHhhhhCCCCCCeEEEEeCCC
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP-GFLKKLSLKFKEPENTTLFILDKFD 216 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~-~fl~eL~~~lk~~Kdk~IVV~C~sG 216 (417)
.++++++.++++ ++++++||||+++||+. ||++- ..+++|||+.++... .+.+++ ...++++|||||++|
T Consensus 272 ~~~~~el~~~l~-~~~~~lIDVR~~~E~~~-ghI~~---~~gAinIPl~~l~~~~~~~~~l----~~~~~~~Ivv~C~sG 342 (370)
T PRK05600 272 RTDTTSLIDATL-NGSATLLDVREPHEVLL-KDLPE---GGASLKLPLSAITDDADILHAL----SPIDGDNVVVYCASG 342 (370)
T ss_pred ccCHHHHHHHHh-cCCeEEEECCCHHHhhh-ccCCC---CCccEeCcHHHhhcchhhhhhc----cccCCCcEEEECCCC
Confidence 478899999996 55689999999999998 55530 015999998643211 112222 222334999999999
Q ss_pred chHHHHHHHHHHcCCCc-EEEcCCCC
Q 014870 217 GNSELVAELVTINGFKN-AYTIKDGA 241 (417)
Q Consensus 217 ~RS~~AA~~L~~~Gfkn-Vy~L~GGi 241 (417)
.||..|++.|+++||++ ||+|+|||
T Consensus 343 ~RS~~Aa~~L~~~G~~~~v~~l~GG~ 368 (370)
T PRK05600 343 IRSADFIEKYSHLGHELTLHNLPGGV 368 (370)
T ss_pred hhHHHHHHHHHHcCCCCceEEecccc
Confidence 99999999999999996 99999999
No 42
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.42 E-value=8.5e-13 Score=129.27 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=85.1
Q ss_pred ccCHHHHHHHhcCCCCceEEEecC----------hhhhhhcCCCCCCCCCCCcEEeccCCCC-----------CchhHHH
Q 014870 138 VESARNAYAKLGDDASAQLLDIRA----------PVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------KPGFLKK 196 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt----------~~Ef~~~G~p~lr~~~kgAvnIPl~~~~-----------~~~fl~e 196 (417)
.++++++.++++ +++.++||+|+ +.||+. ||++ ||+|+|+.... .++.+++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~-GHIp------GA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRA-GHIP------GAVFFDIEALSDHTSPLPHMMPRPETFAV 77 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHh-CcCC------CCEEcCHHHhcCCCCCCCCCCCCHHHHHH
Confidence 589999999996 77899999997 788987 6665 89999865321 1111122
Q ss_pred HhhhhCCCCCCeEEEEeCCCch-HHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCC
Q 014870 197 LSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (417)
Q Consensus 197 L~~~lk~~Kdk~IVV~C~sG~R-S~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~ 258 (417)
+-..+..+++++||+||.+|.+ +..+...|+..||++|+++.||+ .+|+++|+|+....
T Consensus 78 ~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 137 (281)
T PRK11493 78 AMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGL---AGWQRDDLLLEEGA 137 (281)
T ss_pred HHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCH---HHHHHcCCCccCCC
Confidence 2223334789999999998875 55677889999999999999999 99999999987653
No 43
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.41 E-value=5e-13 Score=130.89 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=83.0
Q ss_pred CHHHHHHHhcCCCCceEEEecChhhhh----------hcCCCCCCCCCCCcEEeccCCCCCc-hh--HHHHhhhhC---C
Q 014870 140 SARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP-GF--LKKLSLKFK---E 203 (417)
Q Consensus 140 Sa~ea~elLn~~~~avLIDVRt~~Ef~----------~~G~p~lr~~~kgAvnIPl~~~~~~-~f--l~eL~~~lk---~ 203 (417)
+.+++...++ +++.+|||+|+++||. ..|||+ ||+|+|+..+.+. .+ .++|++.+. .
T Consensus 156 ~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIp------gA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~ 228 (281)
T PRK11493 156 RLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIP------GALNVPWTELVREGELKTTDELDAIFFGRGV 228 (281)
T ss_pred cHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCC------CcCCCCHHHhcCCCCcCCHHHHHHHHHhcCC
Confidence 4455555554 5678999999999995 137776 8999998643221 11 234443332 3
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHh-CCCCccCC
Q 014870 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN-SGLPWIPP 257 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~-aGLPv~~~ 257 (417)
+++++||+||++|.||..+...|+.+||++|+++.||+ ..|.. .++|++.+
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~---~eW~~~~~~P~~~~ 280 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW---SEWGARADLPVEPA 280 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH---HHHccCCCCCcCCC
Confidence 67889999999999999999999999999999999999 99998 79999865
No 44
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.40 E-value=1.1e-12 Score=141.75 Aligned_cols=108 Identities=13% Similarity=0.206 Sum_probs=87.1
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCC-----------CCc-hhHHHHhhhhCCCC
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD-----------DKP-GFLKKLSLKFKEPE 205 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~-----------~~~-~fl~eL~~~lk~~K 205 (417)
.||++++.++++ +++.++||||++.||.. |||+ ||+|++++.. ..+ ++.+.+. .+...+
T Consensus 10 lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~-GHIP------GAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~-~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLD-APELILVDLTSSARYEA-GHIR------GARFVDPKRTQLGKPPAPGLLPDTADLEQLFG-ELGHNP 80 (610)
T ss_pred eecHHHHHHHhc-CCCEEEEECCChHHHHh-CCCC------CcEEcChhHhhccCCCCCCCCCCHHHHHHHHH-HcCCCC
Confidence 599999999996 67899999999999997 6665 8999987521 111 2222222 334578
Q ss_pred CCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCC
Q 014870 206 NTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (417)
Q Consensus 206 dk~IVV~C~sG~-RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~ 257 (417)
|++|||||++|. ++..++-.|+.+||++|++|.||+ .+|+.+|+|+...
T Consensus 81 d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~---~aW~~ag~p~~~~ 130 (610)
T PRK09629 81 DAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGV---LAWEAQALPLSTD 130 (610)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCH---HHHHHcCCccccC
Confidence 999999999884 788999999999999999999999 9999999998654
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.34 E-value=4.5e-12 Score=126.89 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=83.9
Q ss_pred cccCHHHHHHHhcCCCCceEEEec--------C-hhhhhhcCCCCCCCCCCCcEEeccCCCCC------------chhHH
Q 014870 137 GVESARNAYAKLGDDASAQLLDIR--------A-PVEFRQVGSPDVRGLGKRPVSIVYKGDDK------------PGFLK 195 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVR--------t-~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~------------~~fl~ 195 (417)
..|+++++.++++ +++.+||||| + ..||.. |||+ ||+|++++.+.+ ..|.+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~-gHIP------gAi~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQV-AHIP------GALFFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHh-ccCC------CCeecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 3699999999996 6789999996 3 378987 6665 899998653111 12222
Q ss_pred HHhhhhCCCCCCeEEEEeCCCchH-HHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCC
Q 014870 196 KLSLKFKEPENTTLFILDKFDGNS-ELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (417)
Q Consensus 196 eL~~~lk~~Kdk~IVV~C~sG~RS-~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~ 257 (417)
.+. .+...++++|||||++|.++ ..+...|+..||++|++|.||+ .+|+++|+|+...
T Consensus 94 ~l~-~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~---~~W~~~G~pv~~~ 152 (320)
T PLN02723 94 AVS-ALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGL---PKWRASGYDVESS 152 (320)
T ss_pred HHH-HcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCH---HHHHHcCCCcccC
Confidence 222 33346788999999999764 5677889999999999999999 9999999999764
No 46
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.33 E-value=2.1e-12 Score=129.42 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=68.3
Q ss_pred CceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCC-------------------------chhHHHHhhhhC-CCCC
Q 014870 153 SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------------------PGFLKKLSLKFK-EPEN 206 (417)
Q Consensus 153 ~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~-------------------------~~fl~eL~~~lk-~~Kd 206 (417)
+.++||||++.||.. ||++ ||+|||+..... +.+.+.+..... .+++
T Consensus 2 ~~~liDVRsp~Ef~~-ghip------gAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~ 74 (311)
T TIGR03167 2 FDPLIDVRSPAEFAE-GHLP------GAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGP 74 (311)
T ss_pred CCEEEECCCHHHHhc-CCCc------CCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCC
Confidence 468999999999997 6665 899999852100 001111111111 1344
Q ss_pred CeEEEEe-CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccC
Q 014870 207 TTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (417)
Q Consensus 207 k~IVV~C-~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~ 256 (417)
++||+|| ++|.||..++.+|+.+|| +|+++.||+ .+|+..+++...
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~---~aw~~~~~~~~~ 121 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGY---KAYRRFVIDQLE 121 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChH---HHHHHhhhhhhh
Confidence 5699999 589999999999999999 699999999 999999887654
No 47
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.33 E-value=3e-12 Score=130.03 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=73.4
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCc
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~ 217 (417)
.++++++.++ .++.++||||+++||+. ||++ |++|||+.++ ..... ....+++++||+||++|.
T Consensus 262 ~i~~~~~~~~---~~~~~IIDVR~~~ef~~-ghIp------gAinip~~~l-----~~~~~-~~~~~~~~~IvvyC~~G~ 325 (355)
T PRK05597 262 VLDVPRVSAL---PDGVTLIDVREPSEFAA-YSIP------GAHNVPLSAI-----REGAN-PPSVSAGDEVVVYCAAGV 325 (355)
T ss_pred ccCHHHHHhc---cCCCEEEECCCHHHHcc-CcCC------CCEEeCHHHh-----hhccc-cccCCCCCeEEEEcCCCH
Confidence 4566666643 24679999999999997 6665 8999998632 11111 011257899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhC
Q 014870 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMNS 250 (417)
Q Consensus 218 RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~a 250 (417)
||..|+..|++.||++|++++||+ .+|+++
T Consensus 326 rS~~Aa~~L~~~G~~nV~~L~GGi---~~W~~~ 355 (355)
T PRK05597 326 RSAQAVAILERAGYTGMSSLDGGI---EGWLDS 355 (355)
T ss_pred HHHHHHHHHHHcCCCCEEEecCcH---HHHhhC
Confidence 999999999999999999999999 999753
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.32 E-value=3.7e-12 Score=129.34 Aligned_cols=103 Identities=15% Similarity=0.224 Sum_probs=75.3
Q ss_pred CHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCC-------------------------CchhH
Q 014870 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD-------------------------KPGFL 194 (417)
Q Consensus 140 Sa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~-------------------------~~~fl 194 (417)
...++.+++ .++.++||||++.||.. ||++ ||+|+|+.... .+.+.
T Consensus 4 ~~~~~~~~~--~~~~~lIDVRsp~Ef~~-ghIp------gAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~ 74 (345)
T PRK11784 4 DAQDFRALF--LNDTPLIDVRSPIEFAE-GHIP------GAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIA 74 (345)
T ss_pred cHHHHHHHH--hCCCEEEECCCHHHHhc-CCCC------CeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHH
Confidence 456666665 35789999999999997 6665 89999985210 00111
Q ss_pred HHHhhhhCC--CCCCeEEEEe-CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCcc
Q 014870 195 KKLSLKFKE--PENTTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (417)
Q Consensus 195 ~eL~~~lk~--~Kdk~IVV~C-~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~ 255 (417)
+.+...+.. .++++||+|| ++|.||..++.+|+.+|| ++++|.||+ .+|++.+++..
T Consensus 75 ~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~---~awr~~~~~~~ 134 (345)
T PRK11784 75 AHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGY---KAYRRFVIDTL 134 (345)
T ss_pred HHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCH---HHHHHhhHHHH
Confidence 111111111 3789999999 588999999999999999 599999999 99998877543
No 49
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.31 E-value=4.4e-12 Score=126.93 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=84.1
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhh----------hcCCCCCCCCCCCcEEeccCCCCCc--hh--HHHHhhhh---
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP--GF--LKKLSLKF--- 201 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~----------~~G~p~lr~~~kgAvnIPl~~~~~~--~f--l~eL~~~l--- 201 (417)
++.+++.+.++ +++.+|||+|++.||. ..|||+ ||+|+|+..+.+. .| .++|++.+
T Consensus 192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIP------gAvnip~~~~~~~~~~~~~~~el~~~~~~~ 264 (320)
T PLN02723 192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIP------GSKCVPFPQMLDSSQTLLPAEELKKRFEQE 264 (320)
T ss_pred ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCC------CCcccCHHHhcCCCCCCCCHHHHHHHHHhc
Confidence 57788888785 6678999999999983 236776 8999998532111 11 23344333
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhC-CCCccCC
Q 014870 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPP 257 (417)
Q Consensus 202 k~~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~a-GLPv~~~ 257 (417)
...++++||+||.+|.||..+.-.|+.+||++|+++.||+ ..|.+. ++|+..+
T Consensus 265 gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~---~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 265 GISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSW---TEWGALPDTPVATS 318 (320)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCH---HHHhcCCCCCccCC
Confidence 2367899999999999999999999999999999999999 999875 6887654
No 50
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.31 E-value=9.9e-12 Score=108.08 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=75.5
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCch----hH--------HHHhhhhCCCC
Q 014870 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPG----FL--------KKLSLKFKEPE 205 (417)
Q Consensus 139 ISa~ea~elLn~~-~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~----fl--------~eL~~~lk~~K 205 (417)
|+++++.++++.+ ++.++||||++.||+. ||++ +++|+|+..+.... .. ++...++...+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~-~hI~------~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSS-SHIR------GAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGE 74 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhh-Cccc------CcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCC
Confidence 7899999999743 5789999999999997 6665 89999976310000 00 01111222236
Q ss_pred CCeEEEEeCCCch---------HHHHHHHHHH--cCCCcEEEcCCCCCChhhHHh
Q 014870 206 NTTLFILDKFDGN---------SELVAELVTI--NGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 206 dk~IVV~C~sG~R---------S~~AA~~L~~--~GfknVy~L~GGi~g~~aWk~ 249 (417)
+++|||||.+|.+ +..+++.|.+ .|+.+|+.|+||+ .+|++
T Consensus 75 ~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~---~~w~~ 126 (132)
T cd01446 75 SLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF---EQFSS 126 (132)
T ss_pred CCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH---HHHHh
Confidence 7899999999886 7788888988 5888999999999 99975
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.25 E-value=2.1e-11 Score=131.87 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=87.4
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhh-------hcCCCCCCCCCCCcEEeccCCCCCc--h--hHHHHhhhh---CC
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFR-------QVGSPDVRGLGKRPVSIVYKGDDKP--G--FLKKLSLKF---KE 203 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~-------~~G~p~lr~~~kgAvnIPl~~~~~~--~--fl~eL~~~l---k~ 203 (417)
.++.+++.+.++ +++.+|||+|+++||. ..|||+ ||+|+|+....+. . -.+++++.+ ..
T Consensus 148 ~v~~e~v~~~l~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIP------GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi 220 (610)
T PRK09629 148 TATREYLQSRLG-AADLAIWDARAPTEYSGEKVVAAKGGHIP------GAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220 (610)
T ss_pred cccHHHHHHhhC-CCCcEEEECCCccccCCcccccccCCCCC------CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence 467888888885 6778999999999995 247776 9999998532110 0 112333222 34
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhC-CCCccCCCC
Q 014870 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPPKK 259 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~a-GLPv~~~~k 259 (417)
.++++||+||.+|.||..+.-.|+.+||++|+++.||+ .+|.+. ++|++.+..
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw---~eW~~~~~lPv~~~~~ 274 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW---GEWGNHPDTPVEVPTV 274 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH---HHHhCCCCCccccCCC
Confidence 68899999999999999999999999999999999999 999875 799987764
No 52
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.18 E-value=1.1e-10 Score=103.88 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=74.7
Q ss_pred cCHHHHHHHhcC---CCCceEEEecCh--------hhhhhc-----------CCCCCCCCCCCcEEeccCCCC-------
Q 014870 139 ESARNAYAKLGD---DASAQLLDIRAP--------VEFRQV-----------GSPDVRGLGKRPVSIVYKGDD------- 189 (417)
Q Consensus 139 ISa~ea~elLn~---~~~avLIDVRt~--------~Ef~~~-----------G~p~lr~~~kgAvnIPl~~~~------- 189 (417)
+|++++.+.++. +++.++||+|.. .||... ||++ ||+++|+....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIP------gAv~~~~~~~~~~~~~~~ 74 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIP------GASFFDFEECLDEAGFEE 74 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCC------CCEeeCHHHhhCcCCCCC
Confidence 578888888853 467999999987 889851 6665 89999975310
Q ss_pred ----Cc-hhHHHHhhhhCCCCCCeEEEEeCC---CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHH
Q 014870 190 ----KP-GFLKKLSLKFKEPENTTLFILDKF---DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (417)
Q Consensus 190 ----~~-~fl~eL~~~lk~~Kdk~IVV~C~s---G~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk 248 (417)
++ +|.+.+ ..+....+++||+||.+ |.++..+.=.|+.+|+++|+++.||+ .+|+
T Consensus 75 ~~~p~~~~~~~~~-~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~---~~W~ 137 (138)
T cd01445 75 SMEPSEAEFAAMF-EAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGF---FEWF 137 (138)
T ss_pred CCCCCHHHHHHHH-HHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCH---HHhh
Confidence 00 222222 22345678999999986 67788888899999999999999999 9995
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.99 E-value=1.1e-09 Score=115.59 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCC----cEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHH
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKR----PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELV 226 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kg----AvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA~~L 226 (417)
.+++++||||+++||+. +|++ | ++|+|+.+ +.+.+. . .+++++||+||++|.||..+++.|
T Consensus 405 ~~~~~lIDVR~~~E~~~-~hI~------g~~~~a~niP~~~-----l~~~~~-~--l~~~~~iivyC~~G~rS~~aa~~L 469 (482)
T PRK01269 405 PPDDVIIDIRSPDEQED-KPLK------LEGVEVKSLPFYK-----LSTQFG-D--LDQSKTYLLYCDRGVMSRLQALYL 469 (482)
T ss_pred CCCCEEEECCCHHHHhc-CCCC------CCCceEEECCHHH-----HHHHHh-h--cCCCCeEEEECCCCHHHHHHHHHH
Confidence 46789999999999997 6665 7 99999863 222232 1 257889999999999999999999
Q ss_pred HHcCCCcEEEcCC
Q 014870 227 TINGFKNAYTIKD 239 (417)
Q Consensus 227 ~~~GfknVy~L~G 239 (417)
+++||+||+++.+
T Consensus 470 ~~~G~~nv~~y~~ 482 (482)
T PRK01269 470 REQGFSNVKVYRP 482 (482)
T ss_pred HHcCCccEEecCC
Confidence 9999999998753
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.84 E-value=1.1e-08 Score=101.80 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=82.5
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhh---------cCCCCCCCCCCCcEEeccCCCCCc-------hhHHHHhhhh
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQ---------VGSPDVRGLGKRPVSIVYKGDDKP-------GFLKKLSLKF 201 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~~---------~G~p~lr~~~kgAvnIPl~~~~~~-------~fl~eL~~~l 201 (417)
..+..+....+. ....+|||+|+++||+. .|||+ ||+|||+....++ +.++.+.+..
T Consensus 157 ~~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIP------GAiNipw~~~~~~~~~~~~~~~~~~l~~~~ 229 (285)
T COG2897 157 VVDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIP------GAINIPWTDLVDDGGLFKSPEEIARLYADA 229 (285)
T ss_pred cCCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCC------CCcCcCHHHHhcCCCccCcHHHHHHHHHhc
Confidence 455566666664 67788999999999995 37776 9999998743221 1222222122
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCC-CCccCC
Q 014870 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG-LPWIPP 257 (417)
Q Consensus 202 k~~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aG-LPv~~~ 257 (417)
....+++||+||.+|.||...--.|+..|+.++.++.|+. ..|-+.. .|+..+
T Consensus 230 gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSW---sEWg~~~~~PV~~g 283 (285)
T COG2897 230 GIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSW---SEWGSDPDRPVETG 283 (285)
T ss_pred CCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChH---HHhhcCCCCccccC
Confidence 2478899999999999999999999999999889999999 9998764 477654
No 55
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.71 E-value=1.2e-08 Score=103.33 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=79.2
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCCC
Q 014870 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~sG 216 (417)
..||..+..+++++.+..++||||++.||+..+.| .++|||+.++..... +++... .....++|+|+|+.|
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP-------~avNIPL~~l~~~~~-~~~~~~-~~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP-------EAVNIPLKELRSRSG-KKLQGD-LNTESKDIFVICRRG 387 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc-------cccccchhhhhhhhh-hhhccc-ccccCCCEEEEeCCC
Confidence 47999999999986688999999999999998888 599999875432111 222211 124567799999999
Q ss_pred chHHHHHHHHHHcCC-CcEEEcCCCCCChhhHHhC
Q 014870 217 GNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNS 250 (417)
Q Consensus 217 ~RS~~AA~~L~~~Gf-knVy~L~GGi~g~~aWk~a 250 (417)
+.|..|+++|++.++ .+|+.+.||. .+|...
T Consensus 388 NdSQ~Av~~Lre~~~~~~vrDvigGl---~~w~~~ 419 (427)
T KOG2017|consen 388 NDSQRAVRILREKFPDSSVRDVIGGL---KAWAAK 419 (427)
T ss_pred CchHHHHHHHHhhCCchhhhhhhhHH---HHHHHh
Confidence 999999999997654 4677788888 999764
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.56 E-value=4.2e-07 Score=90.58 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=80.5
Q ss_pred ccCHHHHHHHhcCCC-----CceEEEecCh--hhhhhcCCCCCCCCCCCcEEeccCCC-----------CCchhHHHHhh
Q 014870 138 VESARNAYAKLGDDA-----SAQLLDIRAP--VEFRQVGSPDVRGLGKRPVSIVYKGD-----------DKPGFLKKLSL 199 (417)
Q Consensus 138 ~ISa~ea~elLn~~~-----~avLIDVRt~--~Ef~~~G~p~lr~~~kgAvnIPl~~~-----------~~~~fl~eL~~ 199 (417)
-++++-+.+.+. ++ ++.+++++.. .+|.. +||+ ||+.++++.. .+++...++-.
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~-~HIP------GAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLE-GHIP------GAVFFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHh-ccCC------CCEecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 578888877774 44 6777777766 88887 5555 8999887631 12222233322
Q ss_pred hhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccC
Q 014870 200 KFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (417)
Q Consensus 200 ~lk~~Kdk~IVV~C~sG~-RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~ 256 (417)
.+-...|++||+|+..|+ -+..+.=.|+-+|.++|++|.||+ .+|+++|+|+..
T Consensus 84 ~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~---~~W~~~g~p~~~ 138 (285)
T COG2897 84 ELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGL---PAWKAAGLPLET 138 (285)
T ss_pred HcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCH---HHHHHcCCCccC
Confidence 344578999999997665 577888899999999999999999 999999999875
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=5.4e-06 Score=83.74 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=75.7
Q ss_pred CCCCCcccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHH-HHhhhhCCCC
Q 014870 132 KPKSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLK-KLSLKFKEPE 205 (417)
Q Consensus 132 ~~k~~g~ISa~ea~elLn~~-----~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~-eL~~~lk~~K 205 (417)
+-..++.||++++..++... ...++||+|-|.||. +|||. ||+||+..+.....|.. .+.. ...+
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~-GGHIk------gavnl~~~~~~~~~f~~~~~~~--~~~~ 221 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYE-GGHIK------GAVNLYSKELLQDFFLLKDGVP--SGSK 221 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCccccc-Ccccc------cceecccHhhhhhhhccccccc--cccC
Confidence 44556799999999998631 236789999999998 48886 99999865321111111 1100 0134
Q ss_pred CCeEEEEeCCC-chHHHHHHHHHH------------cCCCcEEEcCCCCCChhhHHhC
Q 014870 206 NTTLFILDKFD-GNSELVAELVTI------------NGFKNAYTIKDGAEGPRGWMNS 250 (417)
Q Consensus 206 dk~IVV~C~sG-~RS~~AA~~L~~------------~GfknVy~L~GGi~g~~aWk~a 250 (417)
..-+|++|..- .|.-.+|+.|+. .-|..+|+|.||+ ..|-..
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGY---k~ff~~ 276 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGY---KEFFSN 276 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccH---HHHHHh
Confidence 56799999954 689999999983 3567799999999 888654
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=97.36 E-value=0.0013 Score=65.73 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=76.8
Q ss_pred ccCHHHHHHHhcCCCCceEEEec---------ChhhhhhcCCCCCCCCCCCcEEeccCCCC-----------C-chhHHH
Q 014870 138 VESARNAYAKLGDDASAQLLDIR---------APVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------K-PGFLKK 196 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVR---------t~~Ef~~~G~p~lr~~~kgAvnIPl~~~~-----------~-~~fl~e 196 (417)
.++.+-+.+++. ++..++||-- ...||..-|+| |+.++.++... . +.|.+-
T Consensus 6 iv~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~hip-------ga~~fdld~~~~~s~~~~~~lp~~e~Fa~y 77 (286)
T KOG1529|consen 6 IVSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLERHIP-------GASHFDLDIISYPSSPYRHMLPTAEHFAEY 77 (286)
T ss_pred ccChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhccCC-------CceeeeccccccCCCcccccCccHHHHHHH
Confidence 356666777775 5678888853 34567654555 78888776421 1 122222
Q ss_pred HhhhhCCCCCCeEEEEeC--CCch-HHHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCC
Q 014870 197 LSLKFKEPENTTLFILDK--FDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (417)
Q Consensus 197 L~~~lk~~Kdk~IVV~C~--sG~R-S~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~ 258 (417)
. .++....++.+|||.+ .|+- |..+.=.++-.|+++|+.|.||+ ++|+..|+|+....
T Consensus 78 ~-~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~---~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 78 A-SRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGF---RAWKAAGGPVDSSK 138 (286)
T ss_pred H-HhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcH---HHHHHcCCcccccc
Confidence 2 3445577889999999 7764 44555578899999999999999 99999999987654
No 59
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.15 E-value=0.00061 Score=74.06 Aligned_cols=20 Identities=60% Similarity=1.124 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 014870 398 DPPPQYPDLKPPTSPTPSQP 417 (417)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~ 417 (417)
+||+.|+|||||+||+|++|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~ 391 (576)
T PLN03209 372 SPYTAYEDLKPPTSPIPTPP 391 (576)
T ss_pred CCccccccCCCCCCCCCCCC
Confidence 49999999999999999986
No 60
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.09 E-value=0.00055 Score=74.37 Aligned_cols=19 Identities=63% Similarity=1.244 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 014870 399 PPPQYPDLKPPTSPTPSQP 417 (417)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~ 417 (417)
||+.||||||||||+|++|
T Consensus 440 ~~~~~~~~~~~~~~~~~~~ 458 (576)
T PLN03209 440 PYARYEDLKPPTSPSPTAP 458 (576)
T ss_pred cccccccCCCCCCCCCCCC
Confidence 9999999999999999984
No 61
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=96.49 E-value=0.0055 Score=61.31 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCCceEEEecChhhhhhc----------CCCCCCCCCCCcEEeccCCCCCc-hh---HHHHhhhh---CCCCCCeEEEEe
Q 014870 151 DASAQLLDIRAPVEFRQV----------GSPDVRGLGKRPVSIVYKGDDKP-GF---LKKLSLKF---KEPENTTLFILD 213 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~----------G~p~lr~~~kgAvnIPl~~~~~~-~f---l~eL~~~l---k~~Kdk~IVV~C 213 (417)
..+...||-|+..+|... ||++ |++|+|+.+...+ .+ .+++...+ +...++|+|+-|
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIp------Ga~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC 243 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIP------GAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSC 243 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCC------CcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEee
Confidence 356899999999999743 4555 8999998753211 12 12333222 224579999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHHh
Q 014870 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (417)
Q Consensus 214 ~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~~aWk~ 249 (417)
..|..+...+-.|...| .+|..+.|++ ..|.-
T Consensus 244 ~~Gisa~~i~~al~r~g-~~~~lYdGS~---~Ew~~ 275 (286)
T KOG1529|consen 244 GTGISASIIALALERSG-PDAKLYDGSW---TEWAL 275 (286)
T ss_pred ccchhHHHHHHHHHhcC-CCcceecccH---HHHhh
Confidence 99999999999999999 7889999999 89975
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.10 E-value=0.029 Score=49.77 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=52.3
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCC---C----CCCCCcEEeccCCC-CCchhHHHHhhhhCCCCCCe
Q 014870 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV---R----GLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENTT 208 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~l---r----~~~kgAvnIPl~~~-~~~~fl~eL~~~lk~~Kdk~ 208 (417)
+.+++++...+-. .+=-.+||.|+..|.. +.|.. + ..+-.-+++|+... .++.-+..+...+. ..++|
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~--~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~-~~~~p 88 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEE--SQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG-AAEGP 88 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCCC
Confidence 5789999876553 5567899999988854 22220 0 01113577886521 12223333333332 34689
Q ss_pred EEEEeCCCchHHHHHHHH
Q 014870 209 LFILDKFDGNSELVAELV 226 (417)
Q Consensus 209 IVV~C~sG~RS~~AA~~L 226 (417)
|+++|++|.|+..+..++
T Consensus 89 vL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 89 VLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred EEEEcCCChHHHHHHHHH
Confidence 999999999988876543
No 63
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=96.08 E-value=0.01 Score=60.44 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=75.8
Q ss_pred CCCCCcccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhC---C
Q 014870 132 KPKSWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFK---E 203 (417)
Q Consensus 132 ~~k~~g~ISa~ea~elLn~~-----~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk---~ 203 (417)
+...++.|+++.+..++... -+.++||-|=+.||.. |||. +++||--. ++|...+. .
T Consensus 237 k~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~G-GHIi------naVNi~s~--------~~l~~~F~hkpl 301 (427)
T COG5105 237 KSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRG-GHII------NAVNISST--------KKLGLLFRHKPL 301 (427)
T ss_pred cccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecC-ceee------eeeecchH--------HHHHHHHHhccc
Confidence 33445789999998887521 2467999999999995 6765 79998632 12221111 1
Q ss_pred CCCCeEEEEeCC-CchHHHHHHHHHHcC------------CCcEEEcCCCCCChhhHHhCCCC-ccCCCCCcccc
Q 014870 204 PENTTLFILDKF-DGNSELVAELVTING------------FKNAYTIKDGAEGPRGWMNSGLP-WIPPKKALGLD 264 (417)
Q Consensus 204 ~Kdk~IVV~C~s-G~RS~~AA~~L~~~G------------fknVy~L~GGi~g~~aWk~aGLP-v~~~~k~~~~d 264 (417)
.-.+-+|+.|.. ..|+-..|..|+.+. |..||+|+||+ ...-. ++| +-.++.-+.|+
T Consensus 302 Thp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGY---k~fy~-n~p~lCdP~~YV~Mn 372 (427)
T COG5105 302 THPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGY---KKFYS-NYPDLCDPKGYVTMN 372 (427)
T ss_pred cCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcH---HHHhh-cCccccCcccccccc
Confidence 224679999984 468888898887542 56799999999 76643 343 33444434454
No 64
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.84 E-value=0.034 Score=48.30 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=42.0
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCC-------CCCCCCcEEeccCCC-CCchhHHHHhhhhCCCCCCe
Q 014870 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV-------RGLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENTT 208 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~l-------r~~~kgAvnIPl~~~-~~~~fl~eL~~~lk~~Kdk~ 208 (417)
+.++++++.++-. .+=-.+|+.|+..|=. +.|.. +..+-.-+|+|+... ..++.+..+...+. ..++|
T Consensus 13 ~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~-~~~~P 88 (110)
T PF04273_consen 13 GQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE-SLPKP 88 (110)
T ss_dssp CS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH-TTTTS
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCCC
Confidence 5799999887775 6667899999886632 22110 112224688898641 12223333332232 24679
Q ss_pred EEEEeCCCchHHHHHHH
Q 014870 209 LFILDKFDGNSELVAEL 225 (417)
Q Consensus 209 IVV~C~sG~RS~~AA~~ 225 (417)
|++||++|.||...-.+
T Consensus 89 vl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 89 VLAHCRSGTRASALWAL 105 (110)
T ss_dssp EEEE-SCSHHHHHHHHH
T ss_pred EEEECCCChhHHHHHHH
Confidence 99999999999765543
No 65
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=95.40 E-value=0.044 Score=46.16 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhh
Q 014870 303 IETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLN 341 (417)
Q Consensus 303 ~e~~lq~~Gt~al~~~l~~kl~~~e~rk~t~~~~~~~~~ 341 (417)
+..++|++|..-.++|.++.|+++++|++-.++++++-+
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k~ 86 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSLKK 86 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHHH
Confidence 566899999999999999999999999999999998744
No 66
>PLN02777 photosystem I P subunit (PSI-P)
Probab=90.48 E-value=0.26 Score=45.95 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhcc
Q 014870 305 TILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTK 343 (417)
Q Consensus 305 ~~lq~~Gt~al~~~l~~kl~~~e~rk~t~~~~~~~~~~~ 343 (417)
.+||++|..=.++|.++.|+|.++|++-.++|+++.++.
T Consensus 125 ~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~I 163 (167)
T PLN02777 125 GVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEI 163 (167)
T ss_pred chHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999986543
No 67
>COG2603 Predicted ATPase [General function prediction only]
Probab=88.89 E-value=0.47 Score=48.19 Aligned_cols=83 Identities=23% Similarity=0.306 Sum_probs=50.4
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCC------------CchhH---------HHHhhh-h---C-CC
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD------------KPGFL---------KKLSLK-F---K-EP 204 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~------------~~~fl---------~eL~~~-l---k-~~ 204 (417)
..+..+||||.|.||..++.| +++|+|.-..+ ..... .++... + + -.
T Consensus 13 ~~~~~lid~rap~ef~~g~~~-------ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~ 85 (334)
T COG2603 13 LADTPLIDVRAPIEFENGAMP-------IAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ 85 (334)
T ss_pred hcCCceeeccchHHHhcccch-------hhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 346789999999999984444 68888753100 00000 011100 0 0 12
Q ss_pred CCCeEEEEeCCC-chHHHHHHHH-HHcCCCcEEEcCCCC
Q 014870 205 ENTTLFILDKFD-GNSELVAELV-TINGFKNAYTIKDGA 241 (417)
Q Consensus 205 Kdk~IVV~C~sG-~RS~~AA~~L-~~~GfknVy~L~GGi 241 (417)
.+.|+-++|..| .||...+++| ...|+.- --+.||.
T Consensus 86 e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~-~r~iGGe 123 (334)
T COG2603 86 EENPVGILCARGGLRSKIVQKWLGYAAGIDY-PRVIGGE 123 (334)
T ss_pred HhCCcceeeccccchhHHHHHHHHHHHHhhh-hhhhchH
Confidence 345666668755 5999999999 7778863 3456998
No 68
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=88.35 E-value=1.7 Score=37.13 Aligned_cols=65 Identities=6% Similarity=-0.064 Sum_probs=36.9
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhH-------HHHhhhhCCCCCCeEEEEeCCCc-hHHHH
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL-------KKLSLKFKEPENTTLFILDKFDG-NSELV 222 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl-------~eL~~~lk~~Kdk~IVV~C~sG~-RS~~A 222 (417)
.+-..+||+|+..++....... -.-.++|+.+....... +.+... ...+++|+|+|..|. ||..+
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~--~~~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSD-----FNYLYVPILDLPSQDISKYFDEAVDFIDDA--REKGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCC-----ceEEEEEceeCCCCChHHHHHHHHHHHHHH--HhcCCcEEEECCCCCchhHHH
Confidence 5557899999998861111111 13577887632212111 112211 134679999999996 88754
No 69
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=87.05 E-value=2.6 Score=38.12 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=23.4
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccC
Q 014870 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYK 186 (417)
Q Consensus 136 ~g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~ 186 (417)
...+|.++...+. .-+=-.+||.|++.|......+... +-..+|+|+.
T Consensus 27 l~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~~~p~~~~~--g~~~~~~p~~ 74 (164)
T PF13350_consen 27 LSNLTEADLERLR-ELGIRTIIDLRSPTERERAPDPLID--GVQYVHIPIF 74 (164)
T ss_dssp -TT--HHHHHHHH-HTT--EEEE-S-HHHHHHHS----T--T-EEEE--SS
T ss_pred cCcCCHHHHHHHH-hCCCCEEEECCCccccccCCCCCcC--Cceeeeeccc
Confidence 3578898887666 3566789999999999874222111 1134666654
No 70
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=86.91 E-value=3.2 Score=35.85 Aligned_cols=74 Identities=5% Similarity=0.024 Sum_probs=40.8
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHh---hhhC--CCCCCeEEEEeCCCc-hHHH-HH
Q 014870 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS---LKFK--EPENTTLFILDKFDG-NSEL-VA 223 (417)
Q Consensus 151 ~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~---~~lk--~~Kdk~IVV~C~sG~-RS~~-AA 223 (417)
.+=..+|+++...+....... .-+++|+.+.......+.+. ..+. ...+++|+|+|..|. ||.. ++
T Consensus 25 ~gi~~Vi~l~~~~~~~~~~~~-------~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 25 LGITHVINVTNEVPNLNKKGF-------TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred cCCCEEEEccCCCCCCCCCCC-------EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 445678999987654211111 35778876421111222111 1111 256789999999995 8775 33
Q ss_pred H-HHHHcCC
Q 014870 224 E-LVTINGF 231 (417)
Q Consensus 224 ~-~L~~~Gf 231 (417)
. .+...|+
T Consensus 98 ~yl~~~~~~ 106 (138)
T smart00195 98 AYLMKYRNL 106 (138)
T ss_pred HHHHHHhCC
Confidence 3 4555565
No 71
>PLN02727 NAD kinase
Probab=85.13 E-value=3.1 Score=48.20 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=53.5
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCC------CCCCCCcEEeccCC--CCCchhHHHHhhhhCCCCCCe
Q 014870 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV------RGLGKRPVSIVYKG--DDKPGFLKKLSLKFKEPENTT 208 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~l------r~~~kgAvnIPl~~--~~~~~fl~eL~~~lk~~Kdk~ 208 (417)
+.++++++..+.+ .+=-.+|+.|...|- .+.... +..+-.-+|+|+.. ...++.++++.+.+.....+|
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~--~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkP 343 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVK--DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKP 343 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcC--CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence 5799999877664 555679999998872 121100 01112468899742 223344444444443345789
Q ss_pred EEEEeCCCch--HHHHHHHHH
Q 014870 209 LFILDKFDGN--SELVAELVT 227 (417)
Q Consensus 209 IVV~C~sG~R--S~~AA~~L~ 227 (417)
|+++|++|.| ...+|.+|.
T Consensus 344 VLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 344 IYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 9999999995 334666665
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.89 E-value=17 Score=32.73 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=48.0
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCC-------CCCCCCcEEeccCC-CCCc----hhHHHHhhhhCCC
Q 014870 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV-------RGLGKRPVSIVYKG-DDKP----GFLKKLSLKFKEP 204 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~l-------r~~~kgAvnIPl~~-~~~~----~fl~eL~~~lk~~ 204 (417)
+.++++++.++-. .+=..+|--|+..|=. +-|.. +.++---.+||... -..+ .|...+. .
T Consensus 14 gQi~~~D~~~iaa-~GFksiI~nRPDgEe~--~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~-----e 85 (130)
T COG3453 14 GQISPADIASIAA-LGFKSIICNRPDGEEP--GQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD-----E 85 (130)
T ss_pred CCCCHHHHHHHHH-hccceecccCCCCCCC--CCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHH-----H
Confidence 6899999877664 4555688888876632 33331 11112246788753 1111 2333333 3
Q ss_pred CCCeEEEEeCCCchHHHHH
Q 014870 205 ENTTLFILDKFDGNSELVA 223 (417)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AA 223 (417)
-+.||+-||++|.||...=
T Consensus 86 aegPVlayCrsGtRs~~ly 104 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLY 104 (130)
T ss_pred hCCCEEeeecCCchHHHHH
Confidence 4789999999999998653
No 73
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=65.49 E-value=7.5 Score=35.12 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCCCeEEEEeCC-----CchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 204 PENTTLFILDKF-----DGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 204 ~Kdk~IVV~C~s-----G~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
.++..++++|-. |..-..+++.|++.|..++.+|+||-
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGg 140 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGG 140 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCc
Confidence 345566665543 67778899999999999999999998
No 74
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=64.00 E-value=43 Score=30.84 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=18.9
Q ss_pred CCCCeEEEEeCCC-chHHH-HHHHHHHc
Q 014870 204 PENTTLFILDKFD-GNSEL-VAELVTIN 229 (417)
Q Consensus 204 ~Kdk~IVV~C~sG-~RS~~-AA~~L~~~ 229 (417)
..+.+|+|+|..| +||.. ++..|.+.
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999 47765 45555554
No 75
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=63.31 E-value=19 Score=33.96 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=39.3
Q ss_pred HHHHHhcCCCCceEEEecChhhhhhcCCCCCC----CCCCCcEEeccCCCCCchh------HHHHhhhhCCCCCCeEEEE
Q 014870 143 NAYAKLGDDASAQLLDIRAPVEFRQVGSPDVR----GLGKRPVSIVYKGDDKPGF------LKKLSLKFKEPENTTLFIL 212 (417)
Q Consensus 143 ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr----~~~kgAvnIPl~~~~~~~f------l~eL~~~lk~~Kdk~IVV~ 212 (417)
++.++.+ .+-..+|=.-+..|+..-+++.+. ..+-..+|+|+.+..-|++ .++|...+ ..+++|+++
T Consensus 63 DL~~Lk~-~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L--~~g~~V~vH 139 (168)
T PF05706_consen 63 DLERLKD-WGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARL--ENGRKVLVH 139 (168)
T ss_dssp HHHHHHH-TT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHH--HTT--EEEE
T ss_pred HHHHHHH-CCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEE
Confidence 3334433 343445557788888877777641 1112356788764322222 23343333 347899999
Q ss_pred eCCC-chHHH-HHHHHHHcC
Q 014870 213 DKFD-GNSEL-VAELVTING 230 (417)
Q Consensus 213 C~sG-~RS~~-AA~~L~~~G 230 (417)
|+.| +|+.. ||.+|.+.|
T Consensus 140 C~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHHHc
Confidence 9999 57665 777777765
No 76
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=61.09 E-value=8.3 Score=32.86 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=39.3
Q ss_pred CCceEEEecChhhh---hhcCCCCCCCCCCCcEEeccCCCCC---chhHHHHhhhhC--CCCCCeEEEEeCCCc-hHHH-
Q 014870 152 ASAQLLDIRAPVEF---RQVGSPDVRGLGKRPVSIVYKGDDK---PGFLKKLSLKFK--EPENTTLFILDKFDG-NSEL- 221 (417)
Q Consensus 152 ~~avLIDVRt~~Ef---~~~G~p~lr~~~kgAvnIPl~~~~~---~~fl~eL~~~lk--~~Kdk~IVV~C~sG~-RS~~- 221 (417)
+=..+|+++.+.+. ...... .-+++|+.+... ..+++++...+. ..++.+|+|+|..|. ||..
T Consensus 18 ~I~~Vin~~~~~~~~~~~~~~~~-------~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 90 (133)
T PF00782_consen 18 GITHVINLQEECPNPYFYKPEGI-------EYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAV 90 (133)
T ss_dssp TEEEEEECSSSSSTSHHHTTTTS-------EEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHH
T ss_pred CCCEEEEccCCCcCchhcccCCC-------EEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHH
Confidence 33568999987654 111222 356777653111 112222221111 246789999999995 6665
Q ss_pred HHHHH-HHcCCC
Q 014870 222 VAELV-TINGFK 232 (417)
Q Consensus 222 AA~~L-~~~Gfk 232 (417)
++..| ...|++
T Consensus 91 ~~ayLm~~~~~~ 102 (133)
T PF00782_consen 91 AAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHcCCC
Confidence 44434 445653
No 77
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=58.17 E-value=8.6 Score=33.43 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=28.5
Q ss_pred EEEEeCCC-chHHHHHHHHHHc----CCCcEEEcCCCC
Q 014870 209 LFILDKFD-GNSELVAELVTIN----GFKNAYTIKDGA 241 (417)
Q Consensus 209 IVV~C~sG-~RS~~AA~~L~~~----GfknVy~L~GGi 241 (417)
|+++|..+ .||..|..++++. +-.++.+...|+
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~ 38 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGT 38 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEES
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEee
Confidence 78999976 5899999999888 677889999999
No 78
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=55.13 E-value=50 Score=26.95 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=26.9
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhhcccCchhhHHHHHHhh
Q 014870 314 ALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 357 (417)
Q Consensus 314 al~~~l~~kl~~~e~rk~t~~~~~~~~~~~~a~~~~~~ei~~~~ 357 (417)
+++..++-|+.++++||+.++ ||-.+-.+-||+ |++++.|
T Consensus 26 sl~~~~~~k~~~~~pRK~aYa---dFYknYD~~kdF-erM~~~G 65 (70)
T cd00927 26 SLGAAAAYKFLVNEPRKKAYA---DFYKTYDAMKDF-ERMRKAG 65 (70)
T ss_pred HHHHHHHHHHHHhhHHHHHHH---HHHHccChHHHH-HHHHHcC
Confidence 344444448889999999887 776665555554 6676655
No 79
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=50.91 E-value=43 Score=28.68 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhc-chhhHHHHHHHHHHHhhcccCchhhHHHHHHhhccccCCCCCCCCcCCC
Q 014870 309 ILGSAALVQFASKKLL-FAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPAS 373 (417)
Q Consensus 309 ~~Gt~al~~~l~~kl~-~~e~rk~t~~~~~~~~~~~~a~~~~~~ei~~~~~~ll~~~~~~~~~~~~ 373 (417)
+|..+++..|=.+||+ ..|+--+++.+.|+- .+++-||.++-....-|...+.-+.|++
T Consensus 11 iIlvi~LllFGpkKLPel~r~lGk~ir~fK~a------~~~~~~e~~~~~~~~~~~~~~~~~~p~~ 70 (92)
T PRK00575 11 ILAVVVILLFGAKKLPDAARSLGKSLRIFKSE------VKEMQSDNKAEASAAAAQAPYQVATPTP 70 (92)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHH------HhhhhhccccccccccccCCCccCCCCC
Confidence 4556666666667887 666666666666553 3445566665555555554444444444
No 80
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=50.70 E-value=4.7 Score=44.54 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=57.3
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhh--hhCCCCCCeEEEEeCC
Q 014870 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL--KFKEPENTTLFILDKF 215 (417)
Q Consensus 138 ~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~--~lk~~Kdk~IVV~C~s 215 (417)
.+++++...+ +...++|.|...||...|.. +++|+|+.- .+.-++.+.. .....+.+.++++-..
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s-------~s~nip~~~--~ea~l~~~~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFS-------DSINIPFNN--HEADLDWLRFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhcc-------ccccCCccc--hHHHHHHhhcchHhHHhhCCeEEEeccc
Confidence 4666655443 35679999999999985555 689999861 1122222210 0112355666666666
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 216 DGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 216 G~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
..-+......+..+-+-+...+.+|+
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~ 715 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGF 715 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHH
Confidence 56666666677777777777788888
No 81
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=49.29 E-value=27 Score=32.18 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=18.9
Q ss_pred CCCCCeEEEEeCCCc-hHHHHHHHHHHc
Q 014870 203 EPENTTLFILDKFDG-NSELVAELVTIN 229 (417)
Q Consensus 203 ~~Kdk~IVV~C~sG~-RS~~AA~~L~~~ 229 (417)
+.++.||+|+|.+|. |...+...|++.
T Consensus 88 d~~n~PvLiHC~~G~~rTG~vvg~lRk~ 115 (164)
T PF03162_consen 88 DPRNYPVLIHCNHGKDRTGLVVGCLRKL 115 (164)
T ss_dssp -GGG-SEEEE-SSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcchhhHHHHHHHH
Confidence 456789999999996 777777777753
No 82
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=48.54 E-value=21 Score=30.01 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 014870 206 NTTLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (417)
Q Consensus 206 dk~IVV~C~sG~RS~~AA~~L~----~~GfknVy~L~GGi 241 (417)
.++|+++|.+|..|..+++.++ ++|++ +.+-..++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~ 41 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSY 41 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecH
Confidence 4689999999998777766654 56774 33334444
No 83
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=48.43 E-value=29 Score=29.18 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=28.5
Q ss_pred hhHHHHhhhhCCCCCCeEEEEeCCCchH-HHHHHHHHHcCCC
Q 014870 192 GFLKKLSLKFKEPENTTLFILDKFDGNS-ELVAELVTINGFK 232 (417)
Q Consensus 192 ~fl~eL~~~lk~~Kdk~IVV~C~sG~RS-~~AA~~L~~~Gfk 232 (417)
++++.|++ .+++++++-+++.++ ...++.|+++||.
T Consensus 21 e~l~~L~~-----~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALRE-----RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHH-----TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHH-----cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 56777763 579999999999887 7789999999996
No 84
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=46.01 E-value=65 Score=32.03 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCCceEEEecCh----hhhhhcCCCCCCCCCCCcEEeccCCCCCc--h----hHHHHhhhhCCCCCCeEEEEeCCC-chH
Q 014870 151 DASAQLLDIRAP----VEFRQVGSPDVRGLGKRPVSIVYKGDDKP--G----FLKKLSLKFKEPENTTLFILDKFD-GNS 219 (417)
Q Consensus 151 ~~~avLIDVRt~----~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~--~----fl~eL~~~lk~~Kdk~IVV~C~sG-~RS 219 (417)
.+=..||++.++ ++|+..|+- ..++|+.+...| + |++.+...+ ..+.+|+|+|..| +|+
T Consensus 115 ~gV~~lVrlcE~~Yd~~~~~~~GI~--------~~~lpipDg~aPs~~~i~~~l~~i~~~l--~~g~~VaVHC~AGlGRT 184 (241)
T PTZ00393 115 YNVTDLVRTCERTYNDGEITSAGIN--------VHELIFPDGDAPTVDIVSNWLTIVNNVI--KNNRAVAVHCVAGLGRA 184 (241)
T ss_pred cCCCEEEECCCCCCCHHHHHHcCCe--------EEEeecCCCCCCCHHHHHHHHHHHHHHH--hcCCeEEEECCCCCCHH
Confidence 344567777543 355543442 456666532111 2 333332222 3567899999999 465
Q ss_pred H-HHHHHHHHcCCC
Q 014870 220 E-LVAELVTINGFK 232 (417)
Q Consensus 220 ~-~AA~~L~~~Gfk 232 (417)
. .+|.+|.+.|++
T Consensus 185 Gtl~AayLI~~Gms 198 (241)
T PTZ00393 185 PVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHHcCCC
Confidence 5 466677666653
No 85
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=43.08 E-value=1e+02 Score=25.21 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=21.8
Q ss_pred hhcchhhHHHHHHHHHHHhhcccCchhhHHHHHHhh
Q 014870 322 KLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 357 (417)
Q Consensus 322 kl~~~e~rk~t~~~~~~~~~~~~a~~~~~~ei~~~~ 357 (417)
|+.+++.||+.++ ||-.+- |+.+--+|+++-|
T Consensus 36 kf~v~~pRKk~Ya---dFYknY-D~~k~fe~M~~~G 67 (73)
T PF02937_consen 36 KFGVAEPRKKAYA---DFYKNY-DPMKDFEEMRKAG 67 (73)
T ss_dssp HHHTHHHHHHHHH---HHHHT---HHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHH---HHHHcc-ChHHHHHHHHhcC
Confidence 7779999999887 776554 4444457777654
No 86
>PRK12361 hypothetical protein; Provisional
Probab=42.86 E-value=68 Score=34.76 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=41.9
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhh---hC--CCCCCeEEEEe
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK---FK--EPENTTLFILD 213 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~---lk--~~Kdk~IVV~C 213 (417)
.++.+...+. +.+-..+||+|.+.+........ .+-.-.++|..+...+. .+++... +. ...+++|+|+|
T Consensus 108 ~~a~d~~~L~-~~gI~~Vldlt~E~~~~~~~~~~---~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC 182 (547)
T PRK12361 108 LFPADLEKLK-SNKITAILDVTAEFDGLDWSLTE---EDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHC 182 (547)
T ss_pred CCcccHHHHH-HcCCCEEEEcccccccccccccc---cCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4455554443 34556789999543221000000 00135678865422221 1222211 11 13568999999
Q ss_pred CCCc-hHHH-HHHHHHH
Q 014870 214 KFDG-NSEL-VAELVTI 228 (417)
Q Consensus 214 ~sG~-RS~~-AA~~L~~ 228 (417)
..|. ||.. ++.+|..
T Consensus 183 ~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 183 ALGRGRSVLVLAAYLLC 199 (547)
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 9995 6665 4555553
No 87
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=42.41 E-value=42 Score=29.15 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=35.2
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCCCh-------hhHHhCCCCcc
Q 014870 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (417)
Q Consensus 207 k~IVV~C~sG-~RS~~AA~~L~~~GfknVy~L~GGi~g~-------~aWk~aGLPv~ 255 (417)
++|+++|... .||..|..+|++.+-.++.+...|+.+. ...++.|+++.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~ 57 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDIS 57 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCcc
Confidence 3699999755 5899999999987655677777887432 35555677663
No 88
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=41.56 E-value=34 Score=29.78 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=27.9
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCCChhhH
Q 014870 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGPRGW 247 (417)
Q Consensus 209 IVV~C~sG-~RS~~AA~~L~~~GfknVy~L~GGi~g~~aW 247 (417)
|+++|... .||..|..+|++..=.++.+..-|+ .+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~---~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGT---GAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcc---cCC
Confidence 57899755 5899999999887644577888888 555
No 89
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.87 E-value=29 Score=29.66 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=23.7
Q ss_pred eEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 014870 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (417)
Q Consensus 208 ~IVV~C~sG~RS~~AA~~L~----~~GfknVy~L~GGi 241 (417)
+|+++|.+|..|..+++.++ ++|+. +.....++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~ 38 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAY 38 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeH
Confidence 48999999988888887665 56774 44444555
No 90
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=40.57 E-value=30 Score=29.82 Aligned_cols=34 Identities=18% Similarity=0.020 Sum_probs=23.2
Q ss_pred CeEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 014870 207 TTLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (417)
Q Consensus 207 k~IVV~C~sG~RS~~AA~~L~----~~GfknVy~L~GGi 241 (417)
++|+++|.+|..|..+++.++ ++|+. +..-..++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~ 39 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITA 39 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 369999999998888777664 55764 33333444
No 91
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=39.73 E-value=43 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=18.9
Q ss_pred CCCCeEEEEeCCC-chHHH-HHH-HHHHcCCC
Q 014870 204 PENTTLFILDKFD-GNSEL-VAE-LVTINGFK 232 (417)
Q Consensus 204 ~Kdk~IVV~C~sG-~RS~~-AA~-~L~~~Gfk 232 (417)
.++++|+|+|..| +||.- ++. .|...|..
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 4566999999999 47665 333 44443443
No 92
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.53 E-value=48 Score=30.37 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=33.6
Q ss_pred CCCCCeEEEEeCCCch---HHHHHHHHHHcCCCcEEE--cCCCCCCh-------hhHHhCCCCccCC
Q 014870 203 EPENTTLFILDKFDGN---SELVAELVTINGFKNAYT--IKDGAEGP-------RGWMNSGLPWIPP 257 (417)
Q Consensus 203 ~~Kdk~IVV~C~sG~R---S~~AA~~L~~~GfknVy~--L~GGi~g~-------~aWk~aGLPv~~~ 257 (417)
.++..+|+++|..|++ ...+|+.|.+.|++ |.+ +...-... .-+++.|.++...
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 4678899999998865 66799999999997 444 32211001 3556677666553
No 93
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=37.94 E-value=30 Score=26.28 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=17.7
Q ss_pred eEEEEeCCC-chHHHHHHHHH----HcCCCc
Q 014870 208 TLFILDKFD-GNSELVAELVT----INGFKN 233 (417)
Q Consensus 208 ~IVV~C~sG-~RS~~AA~~L~----~~Gfkn 233 (417)
+++++|.+| ..|..+++.|+ +.|+..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~ 31 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEV 31 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeE
Confidence 378999999 56666666655 446643
No 94
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=37.70 E-value=41 Score=26.84 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=17.4
Q ss_pred eEEEEeCCCchHHHHH-H----HHHHcCCC
Q 014870 208 TLFILDKFDGNSELVA-E----LVTINGFK 232 (417)
Q Consensus 208 ~IVV~C~sG~RS~~AA-~----~L~~~Gfk 232 (417)
+|+++|.+|..+...+ + .++++|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999997655444 4 44567865
No 95
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.39 E-value=40 Score=28.93 Aligned_cols=21 Identities=5% Similarity=0.187 Sum_probs=17.6
Q ss_pred CeEEEEeCCCchHHHHHHHHH
Q 014870 207 TTLFILDKFDGNSELVAELVT 227 (417)
Q Consensus 207 k~IVV~C~sG~RS~~AA~~L~ 227 (417)
++|+++|.+|..|...++.++
T Consensus 4 kkIllvC~~G~sTSll~~km~ 24 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMR 24 (106)
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 579999999999888885554
No 96
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=37.29 E-value=34 Score=28.62 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=22.9
Q ss_pred eEEEEeCCCchHHHHHHHH----HHcCCCcEEEcCCCC
Q 014870 208 TLFILDKFDGNSELVAELV----TINGFKNAYTIKDGA 241 (417)
Q Consensus 208 ~IVV~C~sG~RS~~AA~~L----~~~GfknVy~L~GGi 241 (417)
+|+++|.+|..|..+++.+ +++|+. +.+-..++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~ 37 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPE 37 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 3899999999877777655 456775 44444555
No 97
>PRK10126 tyrosine phosphatase; Provisional
Probab=36.17 E-value=45 Score=29.77 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=26.4
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 207 k~IVV~C~sG-~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
.+|+++|... .||..|..+|++.+ .++.+-.-|+
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~ 37 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGL 37 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeec
Confidence 4799999755 58999999999876 3455667777
No 98
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=35.97 E-value=7.7 Score=39.45 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=51.8
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEEEEeCC--C
Q 014870 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF--D 216 (417)
Q Consensus 139 ISa~ea~elLn~~~~avLIDVRt~~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IVV~C~s--G 216 (417)
-+++++.+.+. ....++|||....|...|++ |++++|...+ ..+...|. ..+..++|++.-.. +
T Consensus 16 ~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIn-------gtis~~~~~~--~~~~~~l~---~~~~~~~i~l~~~~~~~ 81 (314)
T PRK00142 16 EDPEAFRDEHL--ALCKSLGLKGRILVAEEGIN-------GTVSGTIEQT--EAYMAWLK---ADPRFADIRFKISEDDG 81 (314)
T ss_pred CCHHHHHHHHH--HHHHHcCCeeEEEEcCCCce-------EEEEecHHHH--HHHHHHHh---hCcCCCCceEEeccccC
Confidence 45677777664 34678999999999974554 8999997421 13333332 12345677666544 2
Q ss_pred chH----HHHHHHHHHcCCC-cEE
Q 014870 217 GNS----ELVAELVTINGFK-NAY 235 (417)
Q Consensus 217 ~RS----~~AA~~L~~~Gfk-nVy 235 (417)
..- ..+.+.|...|+. ++.
T Consensus 82 ~~f~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 82 HAFPRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred CCcccceeeeeeeeeecCCCCCCC
Confidence 222 5677777788885 543
No 99
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=35.12 E-value=88 Score=30.26 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 206 NTTLFILDKFDG---NSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 206 dk~IVV~C~sG~---RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
.++|+|+|-.|+ ....+|+.|...|+.=..++.|.-
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 678999999775 477899999999976333333543
No 100
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=33.90 E-value=85 Score=31.19 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=30.7
Q ss_pred hHHHHhhhhC-CCCCCeEEEEeCCCchHHHHHH-----HHHHcCCCcEEEc
Q 014870 193 FLKKLSLKFK-EPENTTLFILDKFDGNSELVAE-----LVTINGFKNAYTI 237 (417)
Q Consensus 193 fl~eL~~~lk-~~Kdk~IVV~C~sG~RS~~AA~-----~L~~~GfknVy~L 237 (417)
+++.|+..++ .+++..+|++|+.-.....++- .|.++||.+|++.
T Consensus 123 ~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 123 CVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 4555654443 4688899999996655444433 5678999998864
No 101
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.36 E-value=52 Score=27.48 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=20.8
Q ss_pred eEEEEeCCCch-HHHHHH----HHHHcCCCcEEEcCCCC
Q 014870 208 TLFILDKFDGN-SELVAE----LVTINGFKNAYTIKDGA 241 (417)
Q Consensus 208 ~IVV~C~sG~R-S~~AA~----~L~~~GfknVy~L~GGi 241 (417)
+|+++|.+|.. |..++. .|.++|+. +-+....+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~ 41 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRV 41 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecH
Confidence 69999999985 444344 55677885 33333344
No 102
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=33.01 E-value=50 Score=28.89 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=27.3
Q ss_pred eEEEEeCCC-chHHHHHHHHHHcCCC-cEEEcCCCC
Q 014870 208 TLFILDKFD-GNSELVAELVTINGFK-NAYTIKDGA 241 (417)
Q Consensus 208 ~IVV~C~sG-~RS~~AA~~L~~~Gfk-nVy~L~GGi 241 (417)
+|+++|... .||..|..++++..-+ ++.+...|+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~ 37 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGT 37 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCC
Confidence 699999765 5899999999887543 677788888
No 103
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=32.75 E-value=64 Score=30.56 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCCcccCHHHHHHHhcCCCCceEEEecCh---hhhhhcCCCCCCCCCCCcEEeccCCCCCchhHHHHhhhhCCCCCCeEE
Q 014870 134 KSWGVESARNAYAKLGDDASAQLLDIRAP---VEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLF 210 (417)
Q Consensus 134 k~~g~ISa~ea~elLn~~~~avLIDVRt~---~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~lk~~Kdk~IV 210 (417)
.+-+.+.+.-+.-+-.-+.+..+||+=.. ++|.. - -..|++.|++ .++++|||
T Consensus 42 sG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~----------------~-----~~~fv~~iR~---~hP~tPIl 97 (178)
T PF14606_consen 42 SGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRE----------------R-----LDGFVKTIRE---AHPDTPIL 97 (178)
T ss_dssp TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHH----------------H-----HHHHHHHHHT---T-SSS-EE
T ss_pred cCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHH----------------H-----HHHHHHHHHH---hCCCCCEE
Confidence 34456777655443333567888997543 11111 0 1146666763 36789999
Q ss_pred EEeCCC-----c-----------h--HHHHHHHHHHcCCCcEEEcCC
Q 014870 211 ILDKFD-----G-----------N--SELVAELVTINGFKNAYTIKD 239 (417)
Q Consensus 211 V~C~sG-----~-----------R--S~~AA~~L~~~GfknVy~L~G 239 (417)
++-.-. . | -..+.+.|++.|.+|+|.+.|
T Consensus 98 lv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 98 LVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp EEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred EEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 987322 0 1 224566788889999999976
No 104
>PRK13530 arsenate reductase; Provisional
Probab=32.31 E-value=78 Score=27.95 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=26.9
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 207 k~IVV~C~sG-~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
++|+++|... .||..|..++++.+=.++.+...|+
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 5799999755 5899999888876434566777887
No 105
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=31.14 E-value=73 Score=28.53 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.8
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 207 k~IVV~C~sG-~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
++|+++|... .||..|..++++.. .++.+-..|+
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~ 37 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGV 37 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccc
Confidence 4799999755 58999999998764 2455677788
No 106
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.09 E-value=72 Score=31.44 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCeEEEEeCCC---chHHHHHHHHHHcCCC
Q 014870 206 NTTLFILDKFD---GNSELVAELVTINGFK 232 (417)
Q Consensus 206 dk~IVV~C~sG---~RS~~AA~~L~~~Gfk 232 (417)
.++|+|+|..| +....+|+.|...||+
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~ 89 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE 89 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe
Confidence 36899999966 4577899999999996
No 107
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=30.05 E-value=77 Score=25.01 Aligned_cols=17 Identities=0% Similarity=-0.111 Sum_probs=13.7
Q ss_pred CCeEEEEeCCCc-hHHHH
Q 014870 206 NTTLFILDKFDG-NSELV 222 (417)
Q Consensus 206 dk~IVV~C~sG~-RS~~A 222 (417)
+.+|+|+|..|. |+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 679999999995 76653
No 108
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=30.05 E-value=77 Score=25.01 Aligned_cols=17 Identities=0% Similarity=-0.111 Sum_probs=13.7
Q ss_pred CCeEEEEeCCCc-hHHHH
Q 014870 206 NTTLFILDKFDG-NSELV 222 (417)
Q Consensus 206 dk~IVV~C~sG~-RS~~A 222 (417)
+.+|+|+|..|. |+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 679999999995 76653
No 109
>PRK03100 sec-independent translocase; Provisional
Probab=29.96 E-value=2.4e+02 Score=25.75 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=5.8
Q ss_pred hhccccCCCC
Q 014870 356 IGKTLLPSPA 365 (417)
Q Consensus 356 ~~~~ll~~~~ 365 (417)
+.++|+....
T Consensus 81 i~k~l~d~d~ 90 (136)
T PRK03100 81 LTKHLLDGDD 90 (136)
T ss_pred HHHHhhcCCc
Confidence 4467776444
No 110
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=29.81 E-value=1.5e+02 Score=30.36 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=44.2
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhc--CCCCCCCCCCCcEEeccCCCCCchhHHHHhhhh-CCCCCCeEEEEe
Q 014870 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQV--GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF-KEPENTTLFILD 213 (417)
Q Consensus 137 g~ISa~ea~elLn~~~~avLIDVRt~~Ef~~~--G~p~lr~~~kgAvnIPl~~~~~~~fl~eL~~~l-k~~Kdk~IVV~C 213 (417)
..+...++.+.+. +.+.++||+|+..+|+.. ||+.+ +. -| ....|...|...+ +.+.+++|++-|
T Consensus 136 tg~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~~-----~~--qp----sq~~fe~~L~~~l~~~~~~~~i~~e~ 203 (311)
T TIGR03167 136 TGSGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALGL-----GP--QP----SQKRFENALAEALRRLDPGRPIFVED 203 (311)
T ss_pred CCcCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCCC-----CC--CC----chHHHHHHHHHHHHhCCCCceEEEEe
Confidence 3567788888885 567899999999999841 33321 00 11 1224544444333 235678999999
Q ss_pred CCCchH
Q 014870 214 KFDGNS 219 (417)
Q Consensus 214 ~sG~RS 219 (417)
.+....
T Consensus 204 es~~ig 209 (311)
T TIGR03167 204 ESRRIG 209 (311)
T ss_pred Cchhhc
Confidence 976543
No 111
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=29.30 E-value=56 Score=33.56 Aligned_cols=37 Identities=16% Similarity=-0.031 Sum_probs=29.0
Q ss_pred CCcccCHHHHHHHhc-C----CCCceEEEecChhhhhhcCCCC
Q 014870 135 SWGVESARNAYAKLG-D----DASAQLLDIRAPVEFRQVGSPD 172 (417)
Q Consensus 135 ~~g~ISa~ea~elLn-~----~~~avLIDVRt~~Ef~~~G~p~ 172 (417)
+...+++++..+++. . +.+..+||||++. |+....++
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 345799999998883 2 3578999999998 98766666
No 112
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=28.88 E-value=96 Score=34.33 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=31.7
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCCcEEEc-CCCCCCh------hhHHhCCCCc
Q 014870 206 NTTLFILDKFDGN---SELVAELVTINGFKNAYTI-KDGAEGP------RGWMNSGLPW 254 (417)
Q Consensus 206 dk~IVV~C~sG~R---S~~AA~~L~~~GfknVy~L-~GGi~g~------~aWk~aGLPv 254 (417)
.++|+|+|..|++ ...+|+.|...||+ |.++ .+..... ..|+..|.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 3689999998865 66799999999996 3332 3322111 3466667654
No 113
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=28.38 E-value=75 Score=25.82 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
.+.||+++- +.-.....+.|++.+.+++|.+ ||.
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCC
Confidence 466777655 5555888899999999999998 776
No 114
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=27.70 E-value=27 Score=32.40 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=37.2
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCHHHH-HHHhcCCCCceEEEecChhhhhhcCCCCCC
Q 014870 104 SFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNA-YAKLGDDASAQLLDIRAPVEFRQVGSPDVR 174 (417)
Q Consensus 104 ~F~~~np~lia~~va~l~l~~vi~~~~~~~k~~g~ISa~ea-~elLn~~~~avLIDVRt~~Ef~~~G~p~lr 174 (417)
+|+.+||-|+++..+.++..+++ -+..-+=|++.+-.-.+ .-.++ ...+.||++..-|+..|.-++|
T Consensus 30 ~Fi~~HP~L~~~M~~~y~~~~~l-m~~spy~G~~s~~~ftv~fv~m~---~~llfDI~P~YrfEDIdvLDLR 97 (155)
T PF10777_consen 30 SFIRNHPYLCLAMYAAYLAVAAL-MYYSPYFGLGSVWGFTVFFVVMA---AFLLFDIKPRYRFEDIDVLDLR 97 (155)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHH---HHHHhhccceeeecccCeeEEe
Confidence 49999999998876664322110 01111111112222222 22233 4678999999999987777765
No 115
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=27.04 E-value=72 Score=30.81 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=23.5
Q ss_pred eEEEEeCCC-chHHHHHHHHHHcCCCcEEEc
Q 014870 208 TLFILDKFD-GNSELVAELVTINGFKNAYTI 237 (417)
Q Consensus 208 ~IVV~C~sG-~RS~~AA~~L~~~GfknVy~L 237 (417)
.+-++|.+. +||..|-..|++.|| +|...
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 578999987 589999999999999 46554
No 116
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=26.85 E-value=1.1e+02 Score=27.37 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=18.7
Q ss_pred EEEEeCCCchH---HHHHHHHHHcCCCcEEEc
Q 014870 209 LFILDKFDGNS---ELVAELVTINGFKNAYTI 237 (417)
Q Consensus 209 IVV~C~sG~RS---~~AA~~L~~~GfknVy~L 237 (417)
-+.+|=+|+|- ..++-.+.=.|..++||+
T Consensus 92 ~lh~~iaGGRK~Ms~~~~~a~sl~g~Drl~Hv 123 (124)
T TIGR03642 92 RIIVNISGGRKIMTIILALYAQLLFEDEVYHI 123 (124)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHhCCcceeee
Confidence 56778888873 334444444577788876
No 117
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=26.74 E-value=93 Score=34.66 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred HHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 194 LKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 194 l~eL~~~lk~~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
.++|...+..+-+.||||+.+.-..+...|+.|.++||+ +|.|-||=
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k 551 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYK-VTTLHGGK 551 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccce-EEEeeCCc
Confidence 444544444455788999999999999999999999985 89999986
No 118
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=26.24 E-value=87 Score=29.08 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=28.8
Q ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCCcEEEc
Q 014870 205 ENTTLFILDK---FDGNSELVAELVTINGFKNAYTI 237 (417)
Q Consensus 205 Kdk~IVV~C~---sG~RS~~AA~~L~~~GfknVy~L 237 (417)
+++.|+|++. +|..-..+++.|++.|-.+|+.+
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999876 89999999999999999988875
No 119
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=24.85 E-value=79 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=16.9
Q ss_pred eEEEEeCCCchHH-HHHH----HHHHcCCC
Q 014870 208 TLFILDKFDGNSE-LVAE----LVTINGFK 232 (417)
Q Consensus 208 ~IVV~C~sG~RS~-~AA~----~L~~~Gfk 232 (417)
+++++|.+|..+. .... .+.+.|+.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~ 31 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGID 31 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 6899999998644 4444 44556663
No 120
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=24.61 E-value=86 Score=25.39 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=16.6
Q ss_pred eEEEEeCCCchHH-HHHH----HHHHcCCC
Q 014870 208 TLFILDKFDGNSE-LVAE----LVTINGFK 232 (417)
Q Consensus 208 ~IVV~C~sG~RS~-~AA~----~L~~~Gfk 232 (417)
+|+++|.+|..+. .++. .+.+.|..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 6999999997644 3343 44555664
No 121
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=23.91 E-value=1.2e+02 Score=24.67 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
.+.+++|+|.+-.......+.|.+.++ .++.+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 467899999999999999999998765 478888886
No 122
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=23.67 E-value=4.6e+02 Score=29.31 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014870 301 SEIETILQILGSAALVQFA 319 (417)
Q Consensus 301 ~~~e~~lq~~Gt~al~~~l 319 (417)
-|+|+.|.+.|.+.+-++-
T Consensus 136 ~el~~~L~~~~~i~~~mi~ 154 (582)
T PF03276_consen 136 DELEDVLNFQGQILEQMID 154 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889999998888776643
No 123
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=23.47 E-value=1.3e+02 Score=33.27 Aligned_cols=34 Identities=6% Similarity=0.038 Sum_probs=31.2
Q ss_pred hccceeeecccccccccccccHHHHHHhhhcCCC
Q 014870 57 VHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSA 90 (417)
Q Consensus 57 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (417)
.-|||||+.||++..+-+|-.+.|.+-+-+...+
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~f~~k~~~~l~~~p 49 (535)
T PRK15375 16 NDARLYIAKENTDKAYVAPEKFSSKVLTWLGKMP 49 (535)
T ss_pred cCceEEEeeCCCCeEEEchhhHHHHHHHHHhcCc
Confidence 3899999999999999999999999999998665
No 124
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=23.41 E-value=1e+02 Score=27.03 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=25.7
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCC
Q 014870 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGAE 242 (417)
Q Consensus 209 IVV~C~sG-~RS~~AA~~L~~~GfknVy~L~GGi~ 242 (417)
|+++|... .||..|..++++..=.++.....|+.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 57899755 58998888888864356777888884
No 125
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.99 E-value=1.5e+02 Score=31.92 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCC
Q 014870 206 NTTLFILDKFDGN---SELVAELVTINGFK 232 (417)
Q Consensus 206 dk~IVV~C~sG~R---S~~AA~~L~~~Gfk 232 (417)
.++|+|+|..|++ ...+|+.|...||+
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~ 88 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK 88 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc
Confidence 3689999998765 66799999999997
No 126
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.92 E-value=87 Score=27.34 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=18.5
Q ss_pred CeEEEEeCCCchHHHHHHHHHHc
Q 014870 207 TTLFILDKFDGNSELVAELVTIN 229 (417)
Q Consensus 207 k~IVV~C~sG~RS~~AA~~L~~~ 229 (417)
++|.++|..|..+...++.+++.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 47999999999888777777654
No 127
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=22.75 E-value=96 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.445 Sum_probs=25.6
Q ss_pred CchhHHHHHHHhhhccCHHHHHHHHHHHHHHHH
Q 014870 93 VDASGFIDSVISFGTENPLAIAGGVTILAVPLV 125 (417)
Q Consensus 93 ~~~~~~m~~li~F~~~np~lia~~va~l~l~~v 125 (417)
+|..+-.+.++.|+.+||.=+..-+.+++.|++
T Consensus 2 ~D~k~w~~~~v~~vAkdP~~Fl~~vll~LtPlf 34 (74)
T PF15086_consen 2 IDVKAWASYIVEWVAKDPYEFLTTVLLILTPLF 34 (74)
T ss_pred cchHHHHHHHHHHHHcChHHHHHHHHHHHhHHH
Confidence 567777888899999999877766666666765
No 128
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.40 E-value=2e+02 Score=25.55 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=33.0
Q ss_pred CCeEEEEeCCCch----HHHHHHHHHHcCCCcEEEcCCCCCCh---hhHHhCCCC
Q 014870 206 NTTLFILDKFDGN----SELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLP 253 (417)
Q Consensus 206 dk~IVV~C~sG~R----S~~AA~~L~~~GfknVy~L~GGi~g~---~aWk~aGLP 253 (417)
+-.+|++|..-.. -....+.|++.|..++.++.||.... ..|++.|..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 5678888986643 34566778888887777888886333 456666664
No 129
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=22.27 E-value=1.2e+02 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=28.7
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 207 k~IVV~C~sG-~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
.+|+++|... .||..|-.++++..=.++.+...|.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt 38 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGT 38 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCcc
Confidence 5799999965 5899999999887547788888886
No 130
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=22.25 E-value=1.2e+02 Score=34.02 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=45.2
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCCh------hhHHhCCCCccCCCCCccc
Q 014870 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP------RGWMNSGLPWIPPKKALGL 263 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi~g~------~aWk~aGLPv~~~~k~~~~ 263 (417)
..++.-|+||.+-..++..|++|.+.|++ +..+-||++.- +.|.....++.---.+|-|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGM 292 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGM 292 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccC
Confidence 46778999999999999999999999986 56677888443 5788887776544344544
No 131
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=22.21 E-value=89 Score=28.77 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCCeEEEEeCCCc--hHHHHHHHHHH---cCCCcEEEcCCCCCCh
Q 014870 204 PENTTLFILDKFDG--NSELVAELVTI---NGFKNAYTIKDGAEGP 244 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~--RS~~AA~~L~~---~GfknVy~L~GGi~g~ 244 (417)
+++..+|++|..|. .|...|++|.+ .|..++..+-||-.|.
T Consensus 65 ~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 65 PPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred cCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 56788999999995 59999999987 6888999999999444
No 132
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=22.14 E-value=6.3e+02 Score=26.62 Aligned_cols=201 Identities=21% Similarity=0.248 Sum_probs=107.0
Q ss_pred CCCceEEEecCh-hhhhhcCCCCCCCCCCCcEEeccCCCCCch-hHHHHhhhhCCCC------CCeEEEEeCC----Cch
Q 014870 151 DASAQLLDIRAP-VEFRQVGSPDVRGLGKRPVSIVYKGDDKPG-FLKKLSLKFKEPE------NTTLFILDKF----DGN 218 (417)
Q Consensus 151 ~~~avLIDVRt~-~Ef~~~G~p~lr~~~kgAvnIPl~~~~~~~-fl~eL~~~lk~~K------dk~IVV~C~s----G~R 218 (417)
.+..+++|=|.+ .-|+++|+-.+. |+.-.|+.-..+.. -++.|+.++..++ -+.+|++-+. |++
T Consensus 95 rg~eii~gd~~HI~~~E~gg~s~l~----gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~ 170 (384)
T KOG1368|consen 95 RGSEIIVGDRAHIHRYEQGGISQLA----GVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGK 170 (384)
T ss_pred CCceEEeccchheeehhccChhhhc----cceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCce
Confidence 566788887776 346765543322 44444443211212 2456665554222 3667776654 333
Q ss_pred H------HHHHHHHHHcCCCcEEEcCCCCCChhhHHhCCCCccCCCCCcc---cccc-hhhHHHhhhhccCC-cchhHHH
Q 014870 219 S------ELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALG---LDLS-NLTETISGAIGEGS-EGFSVTL 287 (417)
Q Consensus 219 S------~~AA~~L~~~GfknVy~L~GGi~g~~aWk~aGLPv~~~~k~~~---~dl~-rqvr~ia~~v~~~s-~~~P~~~ 287 (417)
. ....++.+++|.+ .+++ |..=|++-.+.|.|+++..+.|+ +=|+ .+.-=+++.+ .|+ .++-.++
T Consensus 171 vlPle~~~~v~~lak~~glk--LH~D-GARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSVi-VG~k~FI~kA~ 246 (384)
T KOG1368|consen 171 VLPLEELDRVKALAKRHGLK--LHMD-GARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVI-VGSKDFIDKAR 246 (384)
T ss_pred EeeHHHHHHHHHHHhccCCe--eecc-hhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEE-EccHHHHHHHH
Confidence 2 2567778889985 4554 55223555567999987665442 1000 0000132322 343 5567778
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH---------------Hhh-----cccCch
Q 014870 288 AIAAAAGLGVLAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDE---------------FLN-----TKVAPK 347 (417)
Q Consensus 288 ~laa~vG~Gl~a~~~~e~~lq~~Gt~al~~~l~~kl~~~e~rk~t~~~~~~---------------~~~-----~~~a~~ 347 (417)
|+==+.|+|+= . ...|--.|-+++-.-+. +|.+.-.|.+++.+--+ +++ .++.++
T Consensus 247 ~~RKalGGGmR---Q-sGvLaaaaLval~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~ 321 (384)
T KOG1368|consen 247 HFRKALGGGMR---Q-SGVLAAAALVALDENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAE 321 (384)
T ss_pred HHHHHhcCchh---H-HHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHH
Confidence 88666676652 0 01111122333444343 56666666555543211 122 457889
Q ss_pred hhHHHHHHhhccccCCC
Q 014870 348 ELADDIKQIGKTLLPSP 364 (417)
Q Consensus 348 ~~~~ei~~~~~~ll~~~ 364 (417)
+|.+++++.|-.|....
T Consensus 322 ~l~~~~~k~gi~lm~~~ 338 (384)
T KOG1368|consen 322 ELCKFLEKNGILLMGGA 338 (384)
T ss_pred HHHHHHHHCCeEEeecc
Confidence 99999999998887753
No 133
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=22.10 E-value=3.7e+02 Score=29.96 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=10.5
Q ss_pred hccccCCCCCCCCcCCC
Q 014870 357 GKTLLPSPANGKALPAS 373 (417)
Q Consensus 357 ~~~ll~~~~~~~~~~~~ 373 (417)
=|-|||..++..+.|++
T Consensus 254 YqELLPKvtTQeAasaA 270 (574)
T PF07462_consen 254 YQELLPKVTTQEAASAA 270 (574)
T ss_pred HHHhCCCCCCCCCCCCC
Confidence 35578877765555554
No 134
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=22.07 E-value=1.3e+02 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCCeEEEEe---CCCchHHHHHHHHHHcCCCcEEE
Q 014870 205 ENTTLFILD---KFDGNSELVAELVTINGFKNAYT 236 (417)
Q Consensus 205 Kdk~IVV~C---~sG~RS~~AA~~L~~~GfknVy~ 236 (417)
+++.|+|++ .+|..-..+.+.|++.|.+.|..
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 578888876 69999999999999999887654
No 135
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.95 E-value=1.7e+02 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcC
Q 014870 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIK 238 (417)
Q Consensus 205 Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~ 238 (417)
++++++|+- .|.-+..++..|.+.|+++++.+.
T Consensus 11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIG-AGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEE
Confidence 567777765 488899999999999999888764
No 136
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=21.90 E-value=1.2e+02 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHc
Q 014870 204 PENTTLFILDKFDGNSELVAELVTIN 229 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AA~~L~~~ 229 (417)
..|.+|+++|+++..+....+.++++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~l 70 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKEL 70 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHTT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 45789999999999999999888763
No 137
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.52 E-value=87 Score=30.48 Aligned_cols=41 Identities=17% Similarity=0.443 Sum_probs=26.4
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCCcEEEcC-CCCCChhhHHhCC
Q 014870 208 TLFILDKFDGNSELVAELVTINGFKNAYTIK-DGAEGPRGWMNSG 251 (417)
Q Consensus 208 ~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~-GGi~g~~aWk~aG 251 (417)
.|+-+-+.+.-...|.+.|+..||.||.+.. +|. .||.+.+
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~---~G~~~~a 137 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS---KGWPEEA 137 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc---cCCCCCC
Confidence 3444444444455566679999999887665 455 7886643
No 138
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.36 E-value=91 Score=24.81 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=16.8
Q ss_pred eEEEEeCCCch-HHHHHHH----HHHcCCCc
Q 014870 208 TLFILDKFDGN-SELVAEL----VTINGFKN 233 (417)
Q Consensus 208 ~IVV~C~sG~R-S~~AA~~----L~~~Gfkn 233 (417)
+++++|.+|.. |....+. +.+.|+..
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~ 31 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEA 31 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcE
Confidence 38999999975 4444444 44567643
No 139
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.25 E-value=1.9e+02 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
....+++|+|++-.++...++.|++.|+. +..+.|++
T Consensus 243 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~ 279 (434)
T PRK11192 243 PEVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEM 279 (434)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCC
Confidence 45678999999999999999999999985 77788887
No 140
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.19 E-value=1.8e+02 Score=30.14 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
....+++|+|++-.++...++.|.+.|++ +..+.|++
T Consensus 253 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~ 289 (423)
T PRK04837 253 EWPDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDV 289 (423)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCC
Confidence 44678999999999999999999999985 77788887
No 141
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=21.06 E-value=4e+02 Score=22.95 Aligned_cols=34 Identities=3% Similarity=0.155 Sum_probs=25.1
Q ss_pred CCCCeEEEEeCCCchHHH---HHHHHHHcCCCcEEEc
Q 014870 204 PENTTLFILDKFDGNSEL---VAELVTINGFKNAYTI 237 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~---AA~~L~~~GfknVy~L 237 (417)
+++.+|++-+.....-.. +-..++++|++++...
T Consensus 82 ~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 82 NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 456789998888865544 5567789999998653
No 142
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=20.82 E-value=1.9e+02 Score=29.60 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=31.7
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCC-cEEEcCCCC
Q 014870 204 PENTTLFILDKFDGNSELVAELVTINGFK-NAYTIKDGA 241 (417)
Q Consensus 204 ~Kdk~IVV~C~sG~RS~~AA~~L~~~Gfk-nVy~L~GGi 241 (417)
..+.+++|+|++-.++...++.|++.|+. +++.+.|.+
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 35678999999999999999999998753 577788877
No 143
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=20.76 E-value=1.5e+02 Score=28.16 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCC---chHHHHHHHHHHcCCCcEEEc
Q 014870 205 ENTTLFILDKFD---GNSELVAELVTINGFKNAYTI 237 (417)
Q Consensus 205 Kdk~IVV~C~sG---~RS~~AA~~L~~~GfknVy~L 237 (417)
+.++|+|+|..| +....+|+.|.+.|++ ||.+
T Consensus 44 ~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 44 LAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 457899999966 5677899999887764 7765
No 144
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=20.68 E-value=1.2e+02 Score=24.29 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhhcccCchh
Q 014870 284 SVTLAIAAAAGLGVLAFSE-IETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKE 348 (417)
Q Consensus 284 P~~~~laa~vG~Gl~a~~~-~e~~lq~~Gt~al~~~l~~kl~~~e~rk~t~~~~~~~~~~~~a~~~ 348 (417)
|.+-..+++.|+|++.|.+ |=. .=+.+++|+|+- .++.+++|.|+|
T Consensus 15 p~~a~wG~aa~~~v~~f~~~vPr---------~q~dil~KIP~~----------G~~~~~~ippeD 61 (64)
T PF09796_consen 15 PNLALWGGAAGAAVLFFTSGVPR---------FQRDILQKIPVF----------GSYWIKEIPPED 61 (64)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcH---------HHHHHHHhCCcc----------ccccccCCCccc
Confidence 3333346666666665533 222 334555566653 344477777776
No 145
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=20.17 E-value=68 Score=33.99 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.3
Q ss_pred cCCCCCCC
Q 014870 382 DDSPEAVP 389 (417)
Q Consensus 382 ~~~~~~~~ 389 (417)
.++|++.+
T Consensus 172 ~a~p~~~s 179 (457)
T KOG0559|consen 172 AAPPKPSS 179 (457)
T ss_pred CCCCCccC
Confidence 33444444
No 146
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.15 E-value=1.6e+02 Score=32.44 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 014870 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (417)
Q Consensus 202 k~~Kdk~IVV~C~sG~RS~~AA~~L~~~GfknVy~L~GGi 241 (417)
....+.+++|+|++-..+...++.|.+.|+. +..+.|++
T Consensus 253 ~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l 291 (572)
T PRK04537 253 SRSEGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDV 291 (572)
T ss_pred hcccCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 3345678999999999999999999999985 78888887
Done!