BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>014872
MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASAS
IDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYA
NRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLH
ERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFV
KTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNR
GLGQHADLWVPWIEVENGELTERDLVPRTRRTTTEDFERDGLGLFSLTEFDGVVGFEDET
DLDSVVNELVAERTEFGGVRISMFSEGEEEEDYWVTEEAGGDYLLEGGELEEQDSYF

High Scoring Gene Products

Symbol, full name Information P value
AT5G52010 protein from Arabidopsis thaliana 3.6e-121
AT4G12240 protein from Arabidopsis thaliana 4.8e-55

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  014872
        (417 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173038 - symbol:AT5G52010 "AT5G52010" species...  1192  3.6e-121  1
TAIR|locus:2139119 - symbol:AT4G12240 "AT4G12240" species...   568  4.8e-55   1


>TAIR|locus:2173038 [details] [associations]
            symbol:AT5G52010 "AT5G52010" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR007087 InterPro:IPR015880
            PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355 EMBL:CP002688
            GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 EMBL:AB015478
            EMBL:AY039592 EMBL:AY129489 IPI:IPI00522595 RefSeq:NP_200014.1
            UniGene:At.9332 ProteinModelPortal:Q9FJ91 SMR:Q9FJ91 IntAct:Q9FJ91
            PRIDE:Q9FJ91 EnsemblPlants:AT5G52010.1 GeneID:835276
            KEGG:ath:AT5G52010 TAIR:At5g52010 HOGENOM:HOG000240853
            InParanoid:Q9FJ91 OMA:DNKPPRG PhylomeDB:Q9FJ91
            ProtClustDB:CLSN2687448 Genevestigator:Q9FJ91 Uniprot:Q9FJ91
        Length = 396

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 235/392 (59%), Positives = 286/392 (72%)

Query:     1 MKWLCSSLDARSLKPLVRYNKSDFHFSQSLVLEKLPTHFNTKLALKPSKCCIKTSSASAS 60
             M   C+S++    KP + +    F FS S       T F  +   +  + C+K++S+S  
Sbjct:     1 MSLFCNSIETLYPKPFLSHKSHFFTFSNSKFQNPKFTSFPLRHQWR-IESCLKSASSS-- 57

Query:    61 IDIDMVRNKQGIYTQKQNNKVVVLWDLDNKPPRGPPYDAAMSLRRVAERFGEVTDISAYA 120
              +IDMVRNK+GI+  K+  KVVVLWDLDNKPPRGPPY+AA +LR+VAE+ G V +ISAYA
Sbjct:    58 -EIDMVRNKEGIFAPKEK-KVVVLWDLDNKPPRGPPYEAATALRKVAEKLGRVVEISAYA 115

Query:   121 NRHAFIHLPQWVIQERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLH 180
             NRHAFIHLP WV++ERRER+  D +ER+G   P DPYICGVCGRKCKTNLDLKKHFKQLH
Sbjct:   116 NRHAFIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCGRKCKTNLDLKKHFKQLH 175

Query:   181 ERERQKKLNRMKSLKGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFV 240
             ERERQKK+NRM+SLKGKKRQK+KERY+SGN+KYNEAARSLL PKVGYGL +ELRRAGV+V
Sbjct:   176 ERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYV 235

Query:   241 KTVRDKPQAADWALKRQMQHSMSSGVDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNR 300
             KTV DKPQAADWA+KRQ+QHSM+ G+DW+ LVSDD DF +MLRKAR+A+LGT+VV D +R
Sbjct:   236 KTVEDKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDMDR 295

Query:   301 GLGQHADLWVPWIEVENGELTERDLVPXXXXXXXEDFERDGLGLFSLTEFDGVVGFEDET 360
              LG+HADLWVPW  VE GE+ E+DL+P         FE D +G     E   +   EDE 
Sbjct:   296 ALGRHADLWVPWSGVEKGEIGEKDLIPGKRPR----FEEDEVGFGGNDELFSLSYDEDEK 351

Query:   361 DLDSVVNELVAERTEFGGVRISMFSEGEEEED 392
                    E+  E   FG   +S FSE E  ED
Sbjct:   352 A------EMTVESDGFGRFNVSAFSEDEWVED 377


>TAIR|locus:2139119 [details] [associations]
            symbol:AT4G12240 "AT4G12240" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0005739 "mitochondrion"
            evidence=IDA] InterPro:IPR007087 InterPro:IPR015880 PROSITE:PS00028
            PROSITE:PS50157 SMART:SM00355 GO:GO:0005739 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0008270 GO:GO:0003700 EMBL:AL161533
            EMBL:AL080318 UniGene:At.48849 UniGene:At.66589 InterPro:IPR021139
            Pfam:PF01936 HOGENOM:HOG000240853 EMBL:BT005409 EMBL:AK118936
            IPI:IPI00531382 PIR:T48134 RefSeq:NP_192961.1
            ProteinModelPortal:Q9STI7 SMR:Q9STI7 EnsemblPlants:AT4G12240.1
            GeneID:826832 KEGG:ath:AT4G12240 TAIR:At4g12240 eggNOG:NOG321752
            InParanoid:Q9STI7 OMA:KRAGFWV PhylomeDB:Q9STI7
            ProtClustDB:CLSN2685569 Genevestigator:Q9STI7 Uniprot:Q9STI7
        Length = 364

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 120/247 (48%), Positives = 160/247 (64%)

Query:    76 KQNNKVVVLWDLDNKPPRG-PPYDAAMSLRRVAERFGEVTDISAYANRHAFIHLPQWVIQ 134
             K   +V V WDLDNKPP   PPYDAA+ LR  A  FG V  + AYANRHAF ++P  V +
Sbjct:    35 KPKIRVGVWWDLDNKPPASFPPYDAAVKLRTAASSFGTVKLMMAYANRHAFSYVPLEVRE 94

Query:   135 ERRERKQFDILERRGVAVPNDPYICGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMKSL 194
             +R++RK  + LE +G+  P +PY CGVC R+  TN  L  HFKQ+HE E QK++ +++S 
Sbjct:    95 QRKDRKLLNKLENKGLVKPPEPYFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESS 154

Query:   195 KGKKRQKYKERYISGNDKYNEAARSLLKPKVGYGLGSELRRAGVFVKTVRDKPQAADWAL 254
             KG +R +   +Y    +KY  AAR++L PK GYGL  EL+RAG +VK V DKP AAD AL
Sbjct:   155 KGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSDKPDAADKAL 214

Query:   255 KRQMQHSMSSG-VDWMFLVSDDNDFKEMLRKARDANLGTVVVGDSNRG-LGQHADLWVPW 312
             K  +   M    V+ + LVSDD+DF  +L +A++  L TVV+GDSN G L + AD+   W
Sbjct:   215 KEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALKRVADVAYSW 274

Query:   313 IEVENGE 319
              EV  G+
Sbjct:   275 KEVTMGK 281


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      417       394   0.00095  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  268 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.27u 0.10s 39.37t   Elapsed:  00:00:02
  Total cpu time:  39.27u 0.11s 39.38t   Elapsed:  00:00:02
  Start:  Mon May 20 23:44:50 2013   End:  Mon May 20 23:44:52 2013

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