Query 014873
Match_columns 417
No_of_seqs 489 out of 2659
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 19:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk6_A NADH pyrophosphatase; 1 100.0 1.9E-41 6.6E-46 329.3 25.3 247 59-397 17-263 (269)
2 3cng_A Nudix hydrolase; struct 99.9 4.6E-25 1.6E-29 202.0 18.2 154 185-348 2-161 (189)
3 3gz5_A MUTT/nudix family prote 99.9 1.7E-22 5.7E-27 192.7 13.4 175 212-403 13-195 (240)
4 2fb1_A Conserved hypothetical 99.9 1.7E-22 5.9E-27 190.9 13.3 172 214-403 6-182 (226)
5 2qjt_B Nicotinamide-nucleotide 99.9 3.7E-22 1.3E-26 198.7 12.7 192 147-349 141-346 (352)
6 3i7u_A AP4A hydrolase; nudix p 99.8 2.2E-20 7.5E-25 162.1 15.7 123 225-353 8-131 (134)
7 2fml_A MUTT/nudix family prote 99.8 2.4E-20 8.1E-25 181.0 15.9 174 212-403 30-239 (273)
8 2qjo_A Bifunctional NMN adenyl 99.8 4.2E-20 1.4E-24 182.8 12.8 152 174-334 163-322 (341)
9 3u53_A BIS(5'-nucleosyl)-tetra 99.8 9.2E-20 3.2E-24 160.9 10.3 138 211-353 5-144 (155)
10 2pbt_A AP4A hydrolase; nudix p 99.8 1.1E-18 3.7E-23 148.9 15.2 125 223-353 6-131 (134)
11 1vcd_A NDX1; nudix protein, di 99.8 3.7E-18 1.3E-22 144.2 16.4 117 224-348 5-121 (126)
12 3gg6_A Nudix motif 18, nucleos 99.8 2.2E-18 7.5E-23 151.5 15.0 123 222-351 21-147 (156)
13 3son_A Hypothetical nudix hydr 99.8 1.1E-17 3.9E-22 145.8 16.7 119 228-351 14-141 (149)
14 3q1p_A Phosphohydrolase (MUTT/ 99.8 2.2E-18 7.4E-23 159.9 12.5 134 212-350 59-194 (205)
15 2yyh_A MUTT domain, 8-OXO-DGTP 99.8 8E-18 2.7E-22 145.1 14.9 123 213-340 2-128 (139)
16 1ktg_A Diadenosine tetraphosph 99.8 1.5E-17 5.3E-22 142.6 16.2 115 233-351 17-135 (138)
17 3id9_A MUTT/nudix family prote 99.8 5.7E-18 2E-22 151.3 14.0 121 212-338 14-139 (171)
18 2w4e_A MUTT/nudix family prote 99.8 6.1E-18 2.1E-22 147.7 13.7 113 222-338 6-121 (145)
19 1sjy_A MUTT/nudix family prote 99.8 1.3E-17 4.3E-22 146.5 15.5 120 218-340 10-136 (159)
20 3fcm_A Hydrolase, nudix family 99.8 1.3E-17 4.5E-22 153.2 16.2 131 223-355 47-188 (197)
21 3gwy_A Putative CTP pyrophosph 99.8 2E-17 6.8E-22 142.9 15.6 115 222-343 7-125 (140)
22 3shd_A Phosphatase NUDJ; nudix 99.7 2.4E-17 8.2E-22 144.2 15.9 97 233-331 15-112 (153)
23 3h95_A Nucleoside diphosphate- 99.7 2.4E-17 8.1E-22 151.8 16.6 126 216-342 21-148 (199)
24 3eds_A MUTT/nudix family prote 99.7 1.7E-18 5.8E-23 152.4 8.5 111 220-334 20-135 (153)
25 3i9x_A MUTT/nudix family prote 99.7 8.7E-18 3E-22 153.0 13.0 119 233-353 45-174 (187)
26 3o8s_A Nudix hydrolase, ADP-ri 99.7 6.2E-18 2.1E-22 156.9 11.9 132 212-349 61-194 (206)
27 2azw_A MUTT/nudix family prote 99.7 2.6E-17 9E-22 142.5 14.7 124 219-346 16-142 (148)
28 2b0v_A Nudix hydrolase; struct 99.7 4.1E-17 1.4E-21 142.3 15.8 101 233-334 18-120 (153)
29 2o1c_A DATP pyrophosphohydrola 99.7 2.8E-17 9.6E-22 142.3 14.3 127 215-345 4-143 (150)
30 1v8y_A ADP-ribose pyrophosphat 99.7 4.3E-17 1.5E-21 145.9 14.9 119 216-340 29-150 (170)
31 4dyw_A MUTT/nudix family prote 99.7 3.2E-17 1.1E-21 145.1 13.1 116 217-335 25-142 (157)
32 3grn_A MUTT related protein; s 99.7 6.1E-17 2.1E-21 141.9 14.7 109 222-335 9-120 (153)
33 3exq_A Nudix family hydrolase; 99.7 2.8E-17 9.6E-22 146.0 11.5 121 220-343 9-130 (161)
34 2yvp_A NDX2, MUTT/nudix family 99.7 2.8E-17 9.6E-22 148.5 11.6 119 217-339 37-159 (182)
35 2fvv_A Diphosphoinositol polyp 99.7 8.4E-17 2.9E-21 148.3 14.3 103 230-338 50-154 (194)
36 1vhz_A ADP compounds hydrolase 99.7 1.2E-16 4.3E-21 147.5 14.7 116 223-343 51-169 (198)
37 3q93_A 7,8-dihydro-8-oxoguanin 99.7 1.1E-16 3.9E-21 144.6 14.0 106 232-340 34-140 (176)
38 1rya_A GDP-mannose mannosyl hy 99.7 1.2E-16 4.3E-21 140.3 13.6 112 222-334 19-138 (160)
39 3oga_A Nucleoside triphosphata 99.7 1.2E-16 4.1E-21 141.8 13.3 115 224-340 30-155 (165)
40 3f6a_A Hydrolase, nudix family 99.7 8E-17 2.7E-21 142.3 12.0 109 223-335 8-134 (159)
41 1g0s_A Hypothetical 23.7 kDa p 99.7 1.6E-16 5.4E-21 148.0 13.7 125 214-342 51-187 (209)
42 3ees_A Probable pyrophosphohyd 99.7 1.6E-16 5.5E-21 138.1 12.7 104 226-335 26-131 (153)
43 3o6z_A GDP-mannose pyrophospha 99.7 3.1E-16 1.1E-20 143.8 14.6 123 215-343 40-175 (191)
44 1f3y_A Diadenosine 5',5'''-P1, 99.7 2.1E-16 7.2E-21 139.1 12.8 113 221-335 14-146 (165)
45 2fkb_A Putative nudix hydrolas 99.7 5.7E-16 2E-20 139.3 15.5 108 223-335 39-150 (180)
46 3r03_A Nudix hydrolase; struct 99.7 2.6E-16 9.1E-21 135.8 12.3 113 222-340 9-125 (144)
47 2rrk_A ORF135, CTP pyrophospho 99.7 5.2E-16 1.8E-20 133.1 14.0 108 233-345 19-128 (140)
48 3hhj_A Mutator MUTT protein; n 99.7 2.8E-16 9.6E-21 138.4 12.6 116 223-344 31-150 (158)
49 1q27_A Putative nudix hydrolas 99.7 4.2E-16 1.4E-20 139.1 13.7 109 221-335 34-149 (171)
50 1hzt_A Isopentenyl diphosphate 99.7 1.6E-16 5.4E-21 144.9 11.2 115 223-339 34-155 (190)
51 3q91_A Uridine diphosphate glu 99.7 2.2E-16 7.7E-21 148.4 12.2 114 222-338 37-192 (218)
52 1k2e_A Nudix homolog; nudix/MU 99.7 1.9E-16 6.6E-21 139.7 10.0 120 224-354 4-139 (156)
53 2b06_A MUTT/nudix family prote 99.7 6.3E-16 2.1E-20 135.4 12.8 119 218-341 5-126 (155)
54 3fk9_A Mutator MUTT protein; s 99.7 3.1E-16 1.1E-20 143.4 11.2 108 223-335 6-115 (188)
55 1mk1_A ADPR pyrophosphatase; n 99.7 9.3E-16 3.2E-20 142.2 14.3 116 222-341 44-165 (207)
56 2kdv_A RNA pyrophosphohydrolas 99.7 4.4E-15 1.5E-19 132.7 17.6 111 221-334 8-135 (164)
57 3f13_A Putative nudix hydrolas 99.6 1.1E-15 3.7E-20 137.0 13.3 101 223-336 17-117 (163)
58 1nqz_A COA pyrophosphatase (MU 99.6 3.9E-16 1.3E-20 142.6 10.5 112 221-336 34-153 (194)
59 2dsc_A ADP-sugar pyrophosphata 99.6 1.3E-15 4.5E-20 141.7 13.3 114 220-336 61-185 (212)
60 2pqv_A MUTT/nudix family prote 99.6 5.3E-16 1.8E-20 135.9 9.6 106 223-334 21-129 (154)
61 3fjy_A Probable MUTT1 protein; 99.6 2.8E-15 9.4E-20 150.6 15.2 121 231-353 35-177 (364)
62 2jvb_A Protein PSU1, mRNA-deca 99.6 4E-16 1.4E-20 135.3 7.2 109 222-337 5-117 (146)
63 1mut_A MUTT, nucleoside tripho 99.6 2.6E-16 8.8E-21 132.9 3.7 101 228-334 11-113 (129)
64 3e57_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 139.6 11.4 99 233-334 78-188 (211)
65 2a6t_A SPAC19A8.12; alpha/beta 99.6 1.8E-15 6.3E-20 146.6 6.4 113 217-334 97-212 (271)
66 1x51_A A/G-specific adenine DN 99.6 3.2E-14 1.1E-18 125.0 12.8 106 224-334 22-133 (155)
67 2dho_A Isopentenyl-diphosphate 99.5 1E-13 3.5E-18 131.6 12.5 113 222-336 60-192 (235)
68 2pny_A Isopentenyl-diphosphate 99.5 1.2E-13 3.9E-18 132.2 11.0 113 222-336 71-203 (246)
69 1u20_A U8 snoRNA-binding prote 99.5 2.9E-14 1E-18 132.9 5.8 111 214-333 38-164 (212)
70 2xsq_A U8 snoRNA-decapping enz 99.4 8.1E-14 2.8E-18 130.8 5.4 111 212-333 45-172 (217)
71 1q33_A Pyrophosphatase, ADP-ri 99.4 4.1E-12 1.4E-16 124.3 12.9 103 235-340 140-267 (292)
72 3fsp_A A/G-specific adenine gl 99.3 1.7E-12 5.8E-17 130.9 9.7 99 227-334 245-345 (369)
73 3dup_A MUTT/nudix family prote 99.3 2.2E-11 7.6E-16 119.5 14.7 120 222-341 119-250 (300)
74 3qsj_A Nudix hydrolase; struct 99.3 1.5E-11 5.3E-16 116.5 11.2 100 234-336 24-190 (232)
75 3rh7_A Hypothetical oxidoreduc 99.0 1.1E-09 3.7E-14 108.5 10.9 100 225-344 186-287 (321)
76 3kvh_A Protein syndesmos; NUDT 98.8 1E-09 3.6E-14 100.3 3.1 71 234-311 44-116 (214)
77 3bho_A Cleavage and polyadenyl 98.5 1.6E-07 5.3E-12 86.7 8.2 40 234-276 73-112 (208)
78 3j20_Y 30S ribosomal protein S 97.1 0.00024 8.2E-09 51.0 2.3 33 184-218 17-49 (50)
79 2k4x_A 30S ribosomal protein S 93.8 0.027 9.3E-07 41.0 2.1 33 184-218 16-48 (55)
80 3h0g_I DNA-directed RNA polyme 87.8 0.31 1.1E-05 40.4 3.0 32 185-218 3-38 (113)
81 4esj_A Type-2 restriction enzy 84.4 0.42 1.4E-05 44.7 2.3 38 176-215 23-65 (257)
82 3qt1_I DNA-directed RNA polyme 79.6 0.95 3.3E-05 38.7 2.6 40 171-216 13-56 (133)
83 2hf1_A Tetraacyldisaccharide-1 79.2 0.72 2.5E-05 34.8 1.5 39 184-225 6-44 (68)
84 1pft_A TFIIB, PFTFIIBN; N-term 78.8 1.7 5.9E-05 30.3 3.3 30 186-217 5-35 (50)
85 2js4_A UPF0434 protein BB2007; 78.7 0.74 2.5E-05 35.0 1.4 40 184-226 6-45 (70)
86 2jr6_A UPF0434 protein NMA0874 78.7 0.77 2.6E-05 34.7 1.5 39 184-225 6-44 (68)
87 2jny_A Uncharacterized BCR; st 77.0 0.91 3.1E-05 34.2 1.5 42 181-225 5-46 (67)
88 2pk7_A Uncharacterized protein 73.5 1.7 5.8E-05 32.8 2.2 42 182-226 4-45 (69)
89 1twf_I B12.6, DNA-directed RNA 73.2 1.8 6.2E-05 36.2 2.6 31 185-217 3-37 (122)
90 2kpi_A Uncharacterized protein 70.1 2.7 9.3E-05 30.3 2.6 40 182-224 6-45 (56)
91 1vq8_Z 50S ribosomal protein L 68.3 2.1 7.1E-05 33.6 1.7 29 185-215 26-54 (83)
92 3vdp_A Recombination protein R 66.0 0.91 3.1E-05 41.8 -0.9 90 172-274 54-145 (212)
93 2con_A RUH-035 protein, NIN on 66.0 1.9 6.7E-05 33.4 1.1 13 186-198 30-42 (79)
94 1vdd_A Recombination protein R 63.8 0.94 3.2E-05 42.1 -1.3 74 172-258 40-113 (228)
95 3m7n_A Putative uncharacterize 63.4 4.2 0.00015 36.1 3.0 32 186-221 140-171 (179)
96 2xzm_9 RPS31E; ribosome, trans 62.4 3.5 0.00012 37.2 2.3 32 184-217 111-142 (189)
97 1dl6_A Transcription factor II 61.9 4.6 0.00016 29.3 2.4 31 184-216 9-40 (58)
98 2fiy_A Protein FDHE homolog; F 57.5 6.2 0.00021 38.3 3.2 37 185-223 181-226 (309)
99 2ct7_A Ring finger protein 31; 56.9 5 0.00017 31.2 2.0 31 183-215 22-52 (86)
100 1twf_L ABC10-alpha, DNA-direct 56.3 5.2 0.00018 30.3 1.9 30 187-219 29-59 (70)
101 3sgi_A DNA ligase; HET: DNA AM 55.0 2.5 8.7E-05 44.8 0.0 30 187-216 416-447 (615)
102 2jrp_A Putative cytoplasmic pr 54.7 3.5 0.00012 32.1 0.8 11 188-198 33-43 (81)
103 4glx_A DNA ligase; inhibitor, 54.6 4.9 0.00017 42.4 2.1 28 187-214 406-434 (586)
104 2owo_A DNA ligase; protein-DNA 53.0 5.7 0.00019 42.6 2.3 28 187-214 406-434 (671)
105 1gh9_A 8.3 kDa protein (gene M 51.8 6.3 0.00022 29.9 1.8 25 188-216 6-30 (71)
106 3u5c_f 40S ribosomal protein S 51.5 8 0.00027 33.5 2.6 32 184-217 116-149 (152)
107 1dgs_A DNA ligase; AMP complex 50.3 5.6 0.00019 42.7 1.7 26 187-214 404-429 (667)
108 3cc2_Z 50S ribosomal protein L 43.3 9.3 0.00032 31.7 1.6 30 184-215 58-87 (116)
109 1lv3_A Hypothetical protein YA 42.4 2.8 9.5E-05 31.6 -1.5 32 185-217 8-40 (68)
110 2a20_A Regulating synaptic mem 42.4 5.8 0.0002 29.0 0.2 23 186-208 33-55 (62)
111 2k5c_A Uncharacterized protein 39.4 7.7 0.00026 30.2 0.5 37 184-222 6-67 (95)
112 1ffk_W Ribosomal protein L37AE 36.6 38 0.0013 25.7 4.0 31 183-215 24-54 (73)
113 3jyw_9 60S ribosomal protein L 36.0 20 0.00068 27.2 2.3 28 186-215 26-53 (72)
114 1ee8_A MUTM (FPG) protein; bet 34.4 21 0.00072 33.6 2.8 26 187-214 236-263 (266)
115 3h0g_L DNA-directed RNA polyme 34.1 21 0.00073 26.3 2.2 30 185-217 20-49 (63)
116 2zkr_2 60S ribosomal protein L 34.1 16 0.00053 29.3 1.5 27 184-215 14-40 (97)
117 4ayb_P DNA-directed RNA polyme 33.9 23 0.00077 24.7 2.1 35 187-223 4-40 (48)
118 3iz5_m 60S ribosomal protein L 33.8 18 0.00062 28.7 1.9 27 187-215 37-63 (92)
119 3j21_i 50S ribosomal protein L 33.6 20 0.00069 27.9 2.0 28 186-215 35-62 (83)
120 1wd2_A Ariadne-1 protein homol 33.6 18 0.00062 26.2 1.7 31 184-214 4-34 (60)
121 2apo_B Ribosome biogenesis pro 33.4 19 0.00064 26.4 1.8 24 185-216 5-28 (60)
122 2l8e_A Polyhomeotic-like prote 33.2 8.2 0.00028 27.1 -0.2 29 185-214 17-46 (49)
123 2akl_A PHNA-like protein PA012 33.1 19 0.00064 30.5 1.9 31 185-218 26-56 (138)
124 1k3x_A Endonuclease VIII; hydr 32.6 21 0.00071 33.5 2.4 29 183-213 231-261 (262)
125 3u6p_A Formamidopyrimidine-DNA 31.8 21 0.00073 33.7 2.4 26 186-213 245-272 (273)
126 2xzf_A Formamidopyrimidine-DNA 31.8 21 0.00073 33.6 2.4 26 187-214 243-270 (271)
127 3izc_m 60S ribosomal protein R 31.6 20 0.00068 28.5 1.8 28 186-215 36-63 (92)
128 1k82_A Formamidopyrimidine-DNA 31.5 22 0.00074 33.6 2.4 25 187-213 241-267 (268)
129 4a17_Y RPL37A, 60S ribosomal p 29.9 18 0.00062 29.3 1.3 28 186-215 36-63 (103)
130 3k1f_M Transcription initiatio 29.4 28 0.00095 31.1 2.5 31 184-216 19-52 (197)
131 1k81_A EIF-2-beta, probable tr 26.9 31 0.0011 22.4 1.8 27 188-216 2-31 (36)
132 3u50_C Telomerase-associated p 25.6 58 0.002 28.7 3.9 27 186-215 42-68 (172)
133 3fac_A Putative uncharacterize 25.5 14 0.00049 30.0 -0.1 14 185-198 66-79 (118)
134 1x4j_A Ring finger protein 38; 25.0 32 0.0011 25.0 1.9 20 179-198 53-72 (75)
135 2bay_A PRE-mRNA splicing facto 23.9 31 0.0011 24.7 1.5 22 177-198 29-50 (61)
136 1l8d_A DNA double-strand break 22.9 22 0.00076 28.5 0.6 13 186-198 47-59 (112)
137 3k7a_M Transcription initiatio 22.6 38 0.0013 32.9 2.4 29 186-216 21-52 (345)
138 1iym_A EL5; ring-H2 finger, ub 22.4 39 0.0013 22.8 1.8 19 178-196 35-53 (55)
139 2aus_D NOP10, ribosome biogene 22.2 30 0.001 25.3 1.1 25 184-216 3-27 (60)
140 3o9x_A Uncharacterized HTH-typ 21.9 49 0.0017 26.9 2.6 11 186-196 2-12 (133)
141 2zjr_Z 50S ribosomal protein L 21.5 30 0.001 25.2 1.0 22 186-214 30-51 (60)
142 1x3z_A Peptide: N-glycanase; h 21.4 37 0.0013 33.1 2.0 45 176-222 102-172 (335)
143 2jmo_A Parkin; IBR, E3 ligase, 21.4 47 0.0016 25.2 2.2 30 186-215 25-59 (80)
No 1
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=100.00 E-value=1.9e-41 Score=329.26 Aligned_cols=247 Identities=28% Similarity=0.490 Sum_probs=206.0
Q ss_pred CCCCCCeEEEEEeCCceeeecCCCCCCCceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCcc
Q 014873 59 SSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSL 138 (417)
Q Consensus 59 ~~~~~~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lg~~~~~~~~~~a~~~~~~~~~ 138 (417)
..+...+++++|.++++|+.. ++ +.+....++.. .....+|||.. ++.+||+++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~---------~~~~~~~lg~~--~~~~~~~~~~~----- 72 (269)
T 1vk6_A 17 IEKLDHGWWVVSHEQKLWLPK-GE-------LPYGEAANFDL---------VGQRALQIGEW--QGEPVWLVQQQ----- 72 (269)
T ss_dssp CCTTCEEEEEEEETTEEECGG-GS-------CCEEEGGGGTC---------TTCEEEEEEES--SSSEEEEEECC-----
T ss_pred cCCCCCeEEEEEECCEEEEeC-CC-------cCCCChhhcCc---------ccCceEEEecc--CCEEEEEEecC-----
Confidence 456777999999999999954 21 11222222211 22467899985 68899999875
Q ss_pred cccccccccchhhhHHHHhhcchhhhhhHHHHHHHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873 139 ASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (417)
Q Consensus 139 ~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (417)
.+..+.+||.++.. ++.+++++++|++|.+|+++++|||.||+++....+++++.|+ +|+..+||
T Consensus 73 ------~~~~~~~lr~~~~~-------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~C~~~~yp 137 (269)
T 1vk6_A 73 ------RRHDMGSVRQVIDL-------DVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCS--HCRERYYP 137 (269)
T ss_dssp ------CSSCEECTTHHHHH-------CHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred ------CCccchhHHHHhcC-------CHHHhHHHHHHHHHHhhhhcCCccccCCCcCccCCCceeeeCC--CCCCEecC
Confidence 13557789998753 2356789999999999999999999999999999999999997 69999999
Q ss_pred CcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (417)
Q Consensus 219 r~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~ 298 (417)
+++|+|++++.+ +++|||+||.+.+.|+|++|||+||+|||+++||+||++||||+++..+.++++++|++ +.
T Consensus 138 ~~~~~viv~v~~--~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~-----~~ 210 (269)
T 1vk6_A 138 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-----PQ 210 (269)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET-----TE
T ss_pred CCCcEEEEEEEe--CCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCC-----CC
Confidence 999999887766 58999999998778999999999999999999999999999999999999999999984 56
Q ss_pred EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccccccccccccCCCCCc
Q 014873 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPI 378 (417)
Q Consensus 299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~ 378 (417)
.+|++|.+.+..+++.++++|+.+++||++++++.
T Consensus 211 ~~~~~f~a~~~~~~~~~~~~E~~~~~W~~~~el~~--------------------------------------------- 245 (269)
T 1vk6_A 211 SLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL--------------------------------------------- 245 (269)
T ss_dssp EEEEEEEEEEEECCCCCCTTTEEEEEEEETTSCCS---------------------------------------------
T ss_pred EEEEEEEEEECCCCcCCCCcceEEEEEEEHHHhhh---------------------------------------------
Confidence 79999999887777777778999999999998753
Q ss_pred cCCccchHHHHHHHHHhcC
Q 014873 379 FIPGPFAIAHHLISSWVYK 397 (417)
Q Consensus 379 ~lP~~faIA~~Li~~w~~~ 397 (417)
+|...+|++.||+.|+..
T Consensus 246 -l~~~~si~~~li~~~l~~ 263 (269)
T 1vk6_A 246 -LPPPGTVARRLIEDTVAM 263 (269)
T ss_dssp -CCCTTSHHHHHHHHHHHH
T ss_pred -cccCcHHHHHHHHHHHHH
Confidence 467789999999999853
No 2
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.93 E-value=4.6e-25 Score=202.05 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=121.1
Q ss_pred ccCccccCCCcceecc----CccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCC
Q 014873 185 VSRFCGHCGEKTIPKE----AGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPG 259 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~----~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~G 259 (417)
+++|||.||+++.... .+.+..|+ .|++.+|+++..+|.+++.+ +++|||+||.+. ..|.|.+|||+||+|
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~g 77 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICP--KCHTIHYQNPKVIVGCIPEW--ENKVLLCKRAIAPYRGKWTLPAGFMENN 77 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEET--TTTEEECCCCEEEEEEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTT
T ss_pred CcccCchhCCccccccccCCCCcceECC--CCCCccCCCCceEEEEEEEe--CCEEEEEEccCCCCCCeEECceeeccCC
Confidence 5899999999997542 34678897 69999999988877777766 689999999863 378999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHH-HHhhhh
Q 014873 260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVK-KALTFA 338 (417)
Q Consensus 260 EtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~-~~L~~~ 338 (417)
||+++||+||++||||+.+....++....++. ...+++.|.+......+. ..+|..+++|++++++. ..+.++
T Consensus 78 Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~l~~~ 151 (189)
T 3cng_A 78 ETLVQGAARETLEEANARVEIRELYAVYSLPH-----ISQVYMLFRAKLLDLDFF-PGIESLEVRLFGEQEIPWNDIAFR 151 (189)
T ss_dssp CCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGG-----GTEEEEEEEEEECCSCCC-CCTTEEEEEEECTTTCCGGGBSCH
T ss_pred CCHHHHHHHHHHHHHCCccccceeEEEEecCC-----CcEEEEEEEEEeCCCccC-CCccceeEEEECHHHcCcccccCh
Confidence 99999999999999999987666666655542 246777787776655443 35788999999999998 457777
Q ss_pred hHHHHHHHHH
Q 014873 339 EYIKAQRTAA 348 (417)
Q Consensus 339 ~~~~a~~~a~ 348 (417)
+....+..++
T Consensus 152 ~~~~~l~~~l 161 (189)
T 3cng_A 152 VIHDPLKRYM 161 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7665554433
No 3
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.88 E-value=1.7e-22 Score=192.72 Aligned_cols=175 Identities=18% Similarity=0.222 Sum_probs=128.3
Q ss_pred CCCcccCCcCcEEEEEEE--ecCCCEEEEEEecC-CCCCcEEeeeeeccC--CCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 014873 212 CKKRIYPRVDPVVIMLVI--DRENDRVLLSRQSR-FVPRMWSCIAGFIEP--GESLEEAVRRETWEETGIEVGEVVYHTS 286 (417)
Q Consensus 212 C~~~~ypr~~pvVivlvi--~~~~~kVLL~rr~~-~~~g~WslPgG~VE~--GEtleeAa~REv~EEtGl~v~~v~~~~s 286 (417)
|....|+++...|.++|+ +.++++|||++|.+ +..|.|++|||+||+ |||+++||+||++||||+++..+.+++.
T Consensus 13 ~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~ 92 (240)
T 3gz5_A 13 YDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCT 92 (240)
T ss_dssp --------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred cCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEE
Confidence 445566666555555544 44456999999985 457899999999999 9999999999999999999988888877
Q ss_pred eecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHH-HhhhhhHHHHHHHHHHHHHHhhhhhccccccc
Q 014873 287 QPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK-ALTFAEYIKAQRTAAAKVEQMCKGVERGQSLA 365 (417)
Q Consensus 287 ~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~-~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~ 365 (417)
...+.... ....+.+.|++.+.........+|+.+++|+++++++. .+.++|.. ++..+..+++.
T Consensus 93 ~~~~~r~~-~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~-il~~a~~rlr~------------ 158 (240)
T 3gz5_A 93 VGNNSRDA-RGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQ-LIEQARERLTQ------------ 158 (240)
T ss_dssp EEESSSST-TSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHH-HHHHHHHHHHH------------
T ss_pred eCCCccCC-CceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHH-HHHHHHHHHHH------------
Confidence 76653211 12467788888876555444567899999999999985 58888744 44455555544
Q ss_pred cccccccCCCCCccCCccchHH--HHHHHHHhcCcCCCCC
Q 014873 366 ADFNVESGELAPIFIPGPFAIA--HHLISSWVYKDAPDGV 403 (417)
Q Consensus 366 ~~~k~~~~~~~~~~lP~~faIA--~~Li~~w~~~~~~~~~ 403 (417)
|+.|.+++..++|++||+. +++++..++..+++.|
T Consensus 159 ---kl~y~~i~~~llp~~Ftl~~l~~~ye~i~g~~~~~~n 195 (240)
T 3gz5_A 159 ---KALYSLVPGFALSEPFTLPELQHVHEVLLGKPIQGKS 195 (240)
T ss_dssp ---HHHHCSGGGGGSCSSBCHHHHHHHHHHHHTSCCCHHH
T ss_pred ---hcccCcHHHHhCCCCccHHHHHHHHHHHcCCcCCHHH
Confidence 4556778888999999999 6999999998887654
No 4
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.88 E-value=1.7e-22 Score=190.86 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=130.1
Q ss_pred CcccCCcCcEEEEEEEe--cCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 014873 214 KRIYPRVDPVVIMLVID--RENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (417)
Q Consensus 214 ~~~ypr~~pvVivlvi~--~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~ 290 (417)
...|+++..+|.++|+. +++++|||++|.+ +..|.|++|||+||+|||+++||+||++||||+++..+..++...++
T Consensus 6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~ 85 (226)
T 2fb1_A 6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI 85 (226)
T ss_dssp TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence 45567766666666652 4467999999986 45789999999999999999999999999999999888888777554
Q ss_pred CCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 014873 291 VGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNV 370 (417)
Q Consensus 291 ~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~~~~er~~~~~~~~k~ 370 (417)
.... ....+.+.|++.+.......+.+|+.+++|++++++++ +.++|. ..+..++.+++. |.
T Consensus 86 ~r~~-~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~-l~~dh~-~il~~a~~rlr~---------------~~ 147 (226)
T 2fb1_A 86 DRDP-GERVVSIAYYALININEYDRELVQKHNAYWVNINELPA-LIFDHP-EMVDKAREMMKQ---------------KA 147 (226)
T ss_dssp TSSS-SSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC-BSTTHH-HHHHHHHHHHHH---------------HH
T ss_pred CcCC-CceEEEEEEEEEecCcccccCCccccceEEEEHHHhhh-ccCCHH-HHHHHHHHHHHh---------------hc
Confidence 3211 12456777888766544434457889999999999987 778875 444455555544 33
Q ss_pred ccCCCCCccCCccchHH--HHHHHHHhcCcCCCCC
Q 014873 371 ESGELAPIFIPGPFAIA--HHLISSWVYKDAPDGV 403 (417)
Q Consensus 371 ~~~~~~~~~lP~~faIA--~~Li~~w~~~~~~~~~ 403 (417)
.|.+++..++|+.||+. +++++..++..++..|
T Consensus 148 ~y~~i~~~llp~~ftl~~l~~~ye~~~~~~~~~~n 182 (226)
T 2fb1_A 148 SVEPIGFNLLPKLFTLSQLQSLYEAIYGEPMDKRN 182 (226)
T ss_dssp HHSGGGGGGSCSEEEHHHHHHHHHHHHTSCCCHHH
T ss_pred ccCchHHHhCCccccHHHHHHHHHHHhCCCCCchh
Confidence 45667778999999998 8899999998887655
No 5
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.87 E-value=3.7e-22 Score=198.75 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=134.1
Q ss_pred cchhhhHHHHhh-cchhhhhhHHHHHHH-HHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEE
Q 014873 147 LCFVELRTVMVA-TDWADQRAMADLAIA-GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVV 224 (417)
Q Consensus 147 ~~~~~lr~~~~~-~~~~~~~~~~~~~~~-~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvV 224 (417)
.....+|+.+.. .+..+. ...+... +.|..|.+|+++++||+.||.++... ..+. .|+...||++.++|
T Consensus 141 iSST~IR~~~~~~g~~~~~--i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~--~~~~-----~~~~~~~~~~~~~v 211 (352)
T 2qjt_B 141 FNATEFRQKFYNGIISKQY--MCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVI--EYKR-----LWLKAPFKPNFVTV 211 (352)
T ss_dssp CCHHHHHHHHHTTCCCGGG--CSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHH--HHHH-----HHSSSSSCCEEEEE
T ss_pred CCchHHHHHHhccCcccch--hhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHH--HHHH-----HhcccCCCCCceEE
Confidence 456679988753 321110 0012334 67999999999999999999998322 2232 37889999999888
Q ss_pred EEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE----EEEEEeecCCCCCC-CCc
Q 014873 225 IMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV----VYHTSQPWPVGPNS-MPC 298 (417)
Q Consensus 225 ivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v----~~~~s~~~~~~~~~-~p~ 298 (417)
.++|+. +++|||+||.+. .+|.|++|||+||+|||+++||+||++||||+++... .+...+.|.+.... ...
T Consensus 212 ~~vv~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (352)
T 2qjt_B 212 DALVIV--NDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGR 289 (352)
T ss_dssp EEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSE
T ss_pred EEEEEE--CCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCcc
Confidence 888875 689999999863 3589999999999999999999999999999998632 13334444432111 123
Q ss_pred EEEEEEEEEEeccc--cc-CCcccccceEEEeh-hhHHHH--hhhhhHHHHHHHHHH
Q 014873 299 QLMVGFYAYAKSFE--IN-VDKEELEDARWHSR-EDVKKA--LTFAEYIKAQRTAAA 349 (417)
Q Consensus 299 ~l~i~f~a~~~~~~--~~-~~~~E~~~a~Wf~~-del~~~--L~~~~~~~a~~~a~~ 349 (417)
.++++|++.+..++ .. .+++|+.+++||++ +++.++ ..++.....+..+..
T Consensus 290 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~ 346 (352)
T 2qjt_B 290 TISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLE 346 (352)
T ss_dssp EEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHH
Confidence 56778887765544 22 24689999999999 999984 334444444444443
No 6
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.85 E-value=2.2e-20 Score=162.08 Aligned_cols=123 Identities=25% Similarity=0.299 Sum_probs=91.7
Q ss_pred EEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-cEEEEE
Q 014873 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQLMVG 303 (417)
Q Consensus 225 ivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p-~~l~i~ 303 (417)
.++|++ +++|||+||. .|.|++|||+||+|||+++||+||++||||+++..+.+++...+.+...... ...+..
T Consensus 8 g~vv~~--~~~vLL~~r~---~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (134)
T 3i7u_A 8 GGVLFK--DGEVLLIKTP---SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKY 82 (134)
T ss_dssp EEEEEE--TTEEEEEECT---TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEE--CCEEEEEEeC---CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEEE
Confidence 344444 5899999986 4899999999999999999999999999999998777776654433221111 123344
Q ss_pred EEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873 304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ 353 (417)
Q Consensus 304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~ 353 (417)
|.+....+++.++ +|+.+++||+++++++++.+++.+..+..+.+.+.+
T Consensus 83 f~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l~~k 131 (134)
T 3i7u_A 83 YLMKYKEGEPRPS-WEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKEK 131 (134)
T ss_dssp EEEEEEEECCCCC-TTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCcCcCC-hhheEEEEEEHHHHhhhcCChHHHHHHHHHHHHHHc
Confidence 5566555555544 789999999999999999998888777766654443
No 7
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.84 E-value=2.4e-20 Score=181.03 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=125.8
Q ss_pred CCCcccCCcCcEEEEEEEec--C--CCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee--ccEEEE
Q 014873 212 CKKRIYPRVDPVVIMLVIDR--E--NDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYH 284 (417)
Q Consensus 212 C~~~~ypr~~pvVivlvi~~--~--~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v--~~v~~~ 284 (417)
|....|+++...|.++|+.. + +++|||++|.+ +..|.|++|||+||+|||+++||+||++||||+++ ..+..+
T Consensus 30 ~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l 109 (273)
T 2fml_A 30 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL 109 (273)
T ss_dssp SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred hhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEE
Confidence 45456777666555555432 2 34999999986 45689999999999999999999999999999764 456666
Q ss_pred EEeecCCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHH------------------------HhhhhhH
Q 014873 285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKK------------------------ALTFAEY 340 (417)
Q Consensus 285 ~s~~~~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~------------------------~L~~~~~ 340 (417)
+.+..+.... ..+.+++.|++.+.... ....+|..+++||+++++.+ .|+|+|.
T Consensus 110 ~~~~~~~r~~-~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~ 187 (273)
T 2fml_A 110 HSFSRPDRDP-RGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHS 187 (273)
T ss_dssp EEECCTTSST-TSSEEEEEEEEECCCCC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHH
T ss_pred EEEcCCCCCC-CceEEEEEEEEEeCCCC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHH
Confidence 6654332211 12467788888766544 34567899999999997432 4678887
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccccccccCCCCCccCCccchHH--HHHHHHHhc---CcCCCCC
Q 014873 341 IKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIA--HHLISSWVY---KDAPDGV 403 (417)
Q Consensus 341 ~~a~~~a~~~l~~~~~~~er~~~~~~~~k~~~~~~~~~~lP~~faIA--~~Li~~w~~---~~~~~~~ 403 (417)
.. +..++.+++. |+.|.+++..++|+.|||. +++++..++ ..+++.|
T Consensus 188 ~I-l~~al~rlr~---------------kl~y~~i~~~llp~~FTl~~l~~~ye~i~g~~~~~~~~~n 239 (273)
T 2fml_A 188 EI-IIKAFNRVVD---------------KMEHEPQVLQVLGKDFTITEARKVFAKFLGVDYRSIDHSN 239 (273)
T ss_dssp HH-HHHHHHHHHH---------------HTTTCCGGGGGGCSCBCHHHHHHHHHHHHTSCGGGSCHHH
T ss_pred HH-HHHHHHHHHH---------------HhcCCcHHHHhCCccccHHHHHHHHHHHhCCCccccChHH
Confidence 64 3445555544 6778888889999999999 899999998 6666544
No 8
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.82 E-value=4.2e-20 Score=182.79 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=108.2
Q ss_pred HHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCC-CCCcEEee
Q 014873 174 GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCI 252 (417)
Q Consensus 174 ~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~-~~g~WslP 252 (417)
+.+..|..|+.+++||..|+...... ..+. .|+...||++.++|.++|++ +++|||+||.+. .+|.|++|
T Consensus 163 ~v~~~i~~~~~~~r~~~l~~~~~~~~--~~~~-----~~~~~~~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~g~w~lP 233 (341)
T 2qjo_A 163 AIADYLQTFQKSERYIALCDEYQFLQ--AYKQ-----AWATAPYAPTFITTDAVVVQ--AGHVLMVRRQAKPGLGLIALP 233 (341)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH--HHHH-----TTTTSSSCCCEEEEEEEEEE--TTEEEEEECCSSSSTTCEECS
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHH--HHHh-----hhhccCCCCCceEEEEEEEe--CCEEEEEEecCCCCCCeEECC
Confidence 45778999999999999998866322 1121 37788899998888888775 689999999863 36899999
Q ss_pred eeeccCCCCHHHHHHHHHHHHhCCeeccEEEE----EEeecCCCCCC-CCcEEEEEEEEEEecccc-c-CCcccccceEE
Q 014873 253 AGFIEPGESLEEAVRRETWEETGIEVGEVVYH----TSQPWPVGPNS-MPCQLMVGFYAYAKSFEI-N-VDKEELEDARW 325 (417)
Q Consensus 253 gG~VE~GEtleeAa~REv~EEtGl~v~~v~~~----~s~~~~~~~~~-~p~~l~i~f~a~~~~~~~-~-~~~~E~~~a~W 325 (417)
||+||+|||+++||+||++||||+++....++ ..+.|...... ....++++|++....++. . .+++|+.+++|
T Consensus 234 gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W 313 (341)
T 2qjo_A 234 GGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWW 313 (341)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEE
T ss_pred CCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEE
Confidence 99999999999999999999999998643221 12233321111 123567788877654442 2 35688999999
Q ss_pred EehhhHHHH
Q 014873 326 HSREDVKKA 334 (417)
Q Consensus 326 f~~del~~~ 334 (417)
++++++.++
T Consensus 314 ~~~~el~~~ 322 (341)
T 2qjo_A 314 MSLADLYAQ 322 (341)
T ss_dssp EEHHHHHHT
T ss_pred eeHHHHhhh
Confidence 999999984
No 9
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.80 E-value=9.2e-20 Score=160.94 Aligned_cols=138 Identities=23% Similarity=0.311 Sum_probs=97.4
Q ss_pred CCCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 014873 211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (417)
Q Consensus 211 ~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~ 290 (417)
+||.+.|.+.. +..+++++.++||++|.. .+|.|.+|||+||+|||+++||+||++||||+.+.....+....+.
T Consensus 5 a~G~iifr~~~----~~~~~n~~~e~LL~~r~~-~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 79 (155)
T 3u53_A 5 ACGLIIFRRCL----IPKVDNNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRE 79 (155)
T ss_dssp EEEEEEEEECC----CSSSSSCSEEEEEEEESS-SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEE
T ss_pred EeEEEEEcccc----ccceeCCCcEEEEEEecC-CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeee
Confidence 47777775421 112345577999999874 4578999999999999999999999999999998776655443222
Q ss_pred CC-CCCCCcEEEEEEEEEEecccccC-CcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873 291 VG-PNSMPCQLMVGFYAYAKSFEINV-DKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ 353 (417)
Q Consensus 291 ~~-~~~~p~~l~i~f~a~~~~~~~~~-~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~ 353 (417)
.. ...........|++........+ ..+|+.+++||+++|+.+++.++..+.++..+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L~~ 144 (155)
T 3u53_A 80 LNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCS 144 (155)
T ss_dssp EEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred eecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 11 01112234455555555433332 34789999999999999999998888887777666644
No 10
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.80 E-value=1.1e-18 Score=148.87 Aligned_cols=125 Identities=25% Similarity=0.289 Sum_probs=95.3
Q ss_pred EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC-CCcEEE
Q 014873 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS-MPCQLM 301 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~-~p~~l~ 301 (417)
++.+++++ +++|||+||.+ |.|.+|||++|+|||+++||+||++||||+.+..+.+++...+.+.... .....+
T Consensus 6 ~~~~vi~~--~~~vLl~~r~~---~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T 2pbt_A 6 SAGGVLFK--DGEVLLIKTPS---NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV 80 (134)
T ss_dssp EEEEEEEE--TTEEEEEECTT---SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEeCC---CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEEEEEE
Confidence 44555555 57999999975 9999999999999999999999999999999988777776544432111 112345
Q ss_pred EEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873 302 VGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ 353 (417)
Q Consensus 302 i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~ 353 (417)
..|.+.........++ |+.+++|++++++.+++.+++.+.....+..++.+
T Consensus 81 ~~~~~~~~~~~~~~~~-e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~ 131 (134)
T 2pbt_A 81 KYYLMKYKEGEPRPSW-EVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKEK 131 (134)
T ss_dssp EEEEEEEEEECCCCCT-TSSEEEEEEHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcCCCc-ceeEEEEEcHHHHHhhhcchhHHHHHHHHHHHhhh
Confidence 5666666555554443 99999999999999988888888877777766654
No 11
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.78 E-value=3.7e-18 Score=144.19 Aligned_cols=117 Identities=28% Similarity=0.381 Sum_probs=89.0
Q ss_pred EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (417)
Q Consensus 224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~ 303 (417)
+.+++++ .+++|||+||.+ |.|++|||++|+|||+++||+||++||||+++..+.+++...+.+.. ....+..
T Consensus 5 ~~~vi~~-~~~~vLl~~r~~---g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~ 77 (126)
T 1vcd_A 5 AGGVVFN-AKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPK---GVEREVH 77 (126)
T ss_dssp EEEEEEC-TTSCEEEEECTT---SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTT---SCEEEEE
T ss_pred EEEEEEc-CCCEEEEEEECC---CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCC---ceEEEEE
Confidence 3444554 367999999875 89999999999999999999999999999999888877776555421 2244555
Q ss_pred EEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHH
Q 014873 304 FYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAA 348 (417)
Q Consensus 304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~ 348 (417)
|.+....+. ..+..|..+++|++++++.+.+.+++.++....+.
T Consensus 78 ~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~ 121 (126)
T 1vcd_A 78 WFLMRGEGA-PRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVAL 121 (126)
T ss_dssp EEEEEEESC-CCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHH
T ss_pred EEEEEcCCC-CCCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHH
Confidence 666554444 33457889999999999999888877766655443
No 12
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=151.53 Aligned_cols=123 Identities=25% Similarity=0.337 Sum_probs=95.6
Q ss_pred cEEEEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873 222 PVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l 300 (417)
.+|.+++++ .+++|||+||.+. ..|.|++|||+||+|||+++||+||++||||+++..+.+++..... ...+
T Consensus 21 ~~v~~~i~~-~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~------~~~~ 93 (156)
T 3gg6_A 21 YVVLAVFLS-EQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG------PSWV 93 (156)
T ss_dssp EEEEEECBC-TTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS------TTEE
T ss_pred EEEEEEEEe-CCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC------CCEE
Confidence 344445554 4789999999863 3789999999999999999999999999999999888888776543 3456
Q ss_pred EEEEEEEEeccccc---CCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873 301 MVGFYAYAKSFEIN---VDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV 351 (417)
Q Consensus 301 ~i~f~a~~~~~~~~---~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l 351 (417)
.+.|.+........ .+++|+.+++|++++++++++..+.+......+...+
T Consensus 94 ~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 147 (156)
T 3gg6_A 94 RFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQYR 147 (156)
T ss_dssp EEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHHH
T ss_pred EEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccchhHHHHHHHHHHHh
Confidence 67777776544433 2457899999999999999888877777666655544
No 13
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-17 Score=145.84 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=86.7
Q ss_pred EEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE--EEE--EEe---ecCCCCCCCCcEE
Q 014873 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYH--TSQ---PWPVGPNSMPCQL 300 (417)
Q Consensus 228 vi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v--~~~--~s~---~~~~~~~~~p~~l 300 (417)
....++++|||++|.+ .|.|.+|||+||+|||+++||+||++||||+++... ... ... .|.+ +. .....
T Consensus 14 ~~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 89 (149)
T 3son_A 14 IKTEANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSF-NK-PYVVP 89 (149)
T ss_dssp EECSSSEEEEEEEESS--SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCS-SS-CSEEE
T ss_pred EecCCCeEEEEEEEcC--CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeecc-CC-ceEeE
Confidence 3344467999999986 499999999999999999999999999999998643 111 111 2222 11 12344
Q ss_pred EEEEEEEEe--cccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873 301 MVGFYAYAK--SFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV 351 (417)
Q Consensus 301 ~i~f~a~~~--~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l 351 (417)
++.|.+... ..++.+ ++|+.+++|++++++.+++.++..+.++..+..++
T Consensus 90 ~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l 141 (149)
T 3son_A 90 EYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWDSNKTALYELNERL 141 (149)
T ss_dssp EEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556777665 345555 48999999999999999888888877776665555
No 14
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.76 E-value=2.2e-18 Score=159.94 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=98.1
Q ss_pred CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (417)
Q Consensus 212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~ 291 (417)
|+...|++..++|.++|++ +++|||+||.. .|.|++|||++|+|||+++||+||++||||+.+....+++...+..
T Consensus 59 ~~~~~~~~~~~~v~~vv~~--~~~vLLv~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~ 134 (205)
T 3q1p_A 59 ASETGYQTPKVDIRAVVFQ--NEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEK 134 (205)
T ss_dssp SCCCSSCCCEEEEEEEEEE--TTEEEEEEC-----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHH
T ss_pred ccccCCCCCcceEEEEEEE--CCEEEEEEEcC--CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccc
Confidence 4445588878877777776 68999999873 6899999999999999999999999999999998777777665431
Q ss_pred C--CCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHH
Q 014873 292 G--PNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAK 350 (417)
Q Consensus 292 ~--~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~ 350 (417)
. +......+.+.|.+....+.+..+ .|+.+++||++++++++...+........+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~ 194 (205)
T 3q1p_A 135 HQPSPSATHVYKIFIGCEIIGGEKKTS-IETEEVEFFGENELPNLSIARNTEDQIKEMFAY 194 (205)
T ss_dssp HSCCCCSSCEEEEEEEEEEEEECCCCC-TTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHH
T ss_pred cCCCCCCceEEEEEEEEEecCCccCCC-CcceEEEEEeHHHhhhcCCCccHHHHHHHHHHH
Confidence 1 122233455666666655555554 899999999999999865555555555444433
No 15
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.76 E-value=8e-18 Score=145.12 Aligned_cols=123 Identities=20% Similarity=0.125 Sum_probs=91.2
Q ss_pred CCcccCCcCcEEEEEEEe-cCCCE--EEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 014873 213 KKRIYPRVDPVVIMLVID-RENDR--VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289 (417)
Q Consensus 213 ~~~~ypr~~pvVivlvi~-~~~~k--VLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~ 289 (417)
++. |+++.++|.++|++ +.+++ |||+||.+.+ +.|++|||++|+|||+++||+||++||||+.+....+++...+
T Consensus 2 ~~~-y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~ 79 (139)
T 2yyh_A 2 GFN-VKTPLLATDVIIRLWDGENFKGIVLIERKYPP-VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSD 79 (139)
T ss_dssp CCC-CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS-CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_pred Ccc-ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECC
Confidence 345 77777777766665 12567 9999998643 4499999999999999999999999999999987777776655
Q ss_pred CCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHH-HHhhhhhH
Q 014873 290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVK-KALTFAEY 340 (417)
Q Consensus 290 ~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~-~~L~~~~~ 340 (417)
+.... ....++..|.+... +.+. ..+|+.+++|++++++. +.+.+++.
T Consensus 80 ~~~~~-~~~~~~~~f~~~~~-~~~~-~~~e~~~~~W~~~~el~~~~l~~~~~ 128 (139)
T 2yyh_A 80 PERDP-RAHVVSVVWIGDAQ-GEPK-AGSDAKKVKVYRLEEIPLDKLVFDHK 128 (139)
T ss_dssp TTSCT-TSCEEEEEEEEEEE-SCCC-CCTTEEEEEEECTTSCCGGGBCTTHH
T ss_pred CCcCC-CceEEEEEEEEecC-CccC-CCCCcceEEEEEHHHCCHhhcCCCHH
Confidence 43211 12356667777663 3333 45788999999999999 55777653
No 16
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.76 E-value=1.5e-17 Score=142.56 Aligned_cols=115 Identities=23% Similarity=0.257 Sum_probs=84.9
Q ss_pred CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEE----EEeecCCCCCCCCcEEEEEEEEEE
Q 014873 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH----TSQPWPVGPNSMPCQLMVGFYAYA 308 (417)
Q Consensus 233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~----~s~~~~~~~~~~p~~l~i~f~a~~ 308 (417)
+++|||+||. ..+|.|.+|||++|+|||+++||+||++||||+.+..+... +...+... .....+..|.+..
T Consensus 17 ~~~vLl~~r~-~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~~ 92 (138)
T 1ktg_A 17 KIEFLLLQAS-YPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK---GKPKSVKYWLAKL 92 (138)
T ss_dssp EEEEEEEEES-STTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred CcEEEEEEcc-CCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC---CCceEEEEEEEEe
Confidence 3689999987 44679999999999999999999999999999976555433 33333321 1234556666666
Q ss_pred ecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHH
Q 014873 309 KSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKV 351 (417)
Q Consensus 309 ~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l 351 (417)
.......+++|+.+++|++++++.+++.+++.+.....+..++
T Consensus 93 ~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l 135 (138)
T 1ktg_A 93 NNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFL 135 (138)
T ss_dssp CSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cCCcccCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHh
Confidence 5433344568999999999999999888887777766655544
No 17
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.76 E-value=5.7e-18 Score=151.26 Aligned_cols=121 Identities=28% Similarity=0.300 Sum_probs=82.2
Q ss_pred CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (417)
Q Consensus 212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~ 291 (417)
|.......+...|.+++++ +++|||+||.+ ..|.|.+|||++|+|||+++||+||++||||+++....+++...++.
T Consensus 14 ~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 90 (171)
T 3id9_A 14 RRLYIENIMQVRVTGILIE--DEKVLLVKQKV-ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPD 90 (171)
T ss_dssp --------CEEEEEEEEEE--TTEEEEEECSS-TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETT
T ss_pred hhhccCCceEEEEEEEEEE--CCEEEEEEEEC-CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccC
Confidence 3333334445556666665 58999999986 37899999999999999999999999999999997777776665553
Q ss_pred CCCCCCcEEEEEEEEEEecccccC-----CcccccceEEEehhhHHHHhhhh
Q 014873 292 GPNSMPCQLMVGFYAYAKSFEINV-----DKEELEDARWHSREDVKKALTFA 338 (417)
Q Consensus 292 ~~~~~p~~l~i~f~a~~~~~~~~~-----~~~E~~~a~Wf~~del~~~L~~~ 338 (417)
. ......+.|.+....+.... +.+|+.+++|++++++.++...+
T Consensus 91 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 139 (171)
T 3id9_A 91 A---SPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSE 139 (171)
T ss_dssp S---SSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCT
T ss_pred C---CCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCH
Confidence 2 23355566666655444333 55889999999999999854333
No 18
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.76 E-value=6.1e-18 Score=147.74 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=77.0
Q ss_pred cEEEEEEEecCCCEEEEEEecCCC--CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcE
Q 014873 222 PVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ 299 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~~~--~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~ 299 (417)
.+|.+++++. +++|||+++.+.. .+.|++|||++|+|||+++||+||++||||+++..+.+++..... +. ....
T Consensus 6 ~~v~vi~~~~-~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~--~~-~~~~ 81 (145)
T 2w4e_A 6 RAVFILPVTA-QGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQ--PS-ISGV 81 (145)
T ss_dssp EEEEEEEEET-TSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSC--TT-TCCC
T ss_pred CEEEEEEEcC-CCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCC--CC-ccCc
Confidence 3555555654 6899998876543 348999999999999999999999999999999877776653211 11 1223
Q ss_pred EEEEEEEEE-ecccccCCcccccceEEEehhhHHHHhhhh
Q 014873 300 LMVGFYAYA-KSFEINVDKEELEDARWHSREDVKKALTFA 338 (417)
Q Consensus 300 l~i~f~a~~-~~~~~~~~~~E~~~a~Wf~~del~~~L~~~ 338 (417)
.+..|++.. ..+....+++|+.+++|++++++.+++..+
T Consensus 82 ~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 121 (145)
T 2w4e_A 82 VFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAG 121 (145)
T ss_dssp EEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHHT
T ss_pred eEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcC
Confidence 455666653 233445567899999999999999976543
No 19
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.76 E-value=1.3e-17 Score=146.50 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=91.8
Q ss_pred CCcCcEEEEEEEecCCCEEEEEEecC-----CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 014873 218 PRVDPVVIMLVIDRENDRVLLSRQSR-----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG 292 (417)
Q Consensus 218 pr~~pvVivlvi~~~~~kVLL~rr~~-----~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~ 292 (417)
|....++.+++++. +++|||++|.+ ..+|.|.+|||++|+|||+++||+||++||||+.+..+.+++...+.+.
T Consensus 10 ~~~~~~~~~vi~~~-~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~ 88 (159)
T 1sjy_A 10 PVELRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFP 88 (159)
T ss_dssp CCCEEEEEEEEBCT-TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECT
T ss_pred CeEEEeEEEEEEeC-CCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccC
Confidence 44455666666654 68999999985 2568999999999999999999999999999999988887777664432
Q ss_pred CCCCCcEEEEEEEEEEeccc-ccC-CcccccceEEEehhhHHHHhhhhhH
Q 014873 293 PNSMPCQLMVGFYAYAKSFE-INV-DKEELEDARWHSREDVKKALTFAEY 340 (417)
Q Consensus 293 ~~~~p~~l~i~f~a~~~~~~-~~~-~~~E~~~a~Wf~~del~~~L~~~~~ 340 (417)
.. ....+..|.+....+. +.. +++|+.+++|++++++.+++..+.+
T Consensus 89 ~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~ 136 (159)
T 1sjy_A 89 DG--VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQI 136 (159)
T ss_dssp TS--CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTTCB
T ss_pred CC--ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcccc
Confidence 21 3456667777765555 555 6789999999999999997665443
No 20
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.76 E-value=1.3e-17 Score=153.23 Aligned_cols=131 Identities=12% Similarity=0.165 Sum_probs=88.6
Q ss_pred EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCe-ecc----EEEEEEeecCCCC--C-
Q 014873 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE-VGE----VVYHTSQPWPVGP--N- 294 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~-v~~----v~~~~s~~~~~~~--~- 294 (417)
++.++|++.++++|||+|+. ..|.|.+|||+||+|||+++||+||++||||++ +.. +..+.....+... .
T Consensus 47 ~~~~vv~~~~~~~vLL~~r~--~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (197)
T 3fcm_A 47 TSSAFAVNKERNKFLMIHHN--IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGK 124 (197)
T ss_dssp EEEEEEECTTSCEEEEEEET--TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETTE
T ss_pred EEEEEEEECCCCEEEEEEec--CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccCc
Confidence 45556666655699999987 368999999999999999999999999999998 321 1111111111000 0
Q ss_pred --CCCcEEEEEEEEEEecc-cccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHhh
Q 014873 295 --SMPCQLMVGFYAYAKSF-EINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMC 355 (417)
Q Consensus 295 --~~p~~l~i~f~a~~~~~-~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~~ 355 (417)
.....+.+.|++..... .+..+++|+.+++||+++++.+++..+.....+..+.+++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~~~~ 188 (197)
T 3fcm_A 125 YVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLKTQS 188 (197)
T ss_dssp EECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHHC--
T ss_pred ccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 01123446666665543 35566789999999999999999999999888888888876643
No 21
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.75 E-value=2e-17 Score=142.95 Aligned_cols=115 Identities=18% Similarity=0.100 Sum_probs=84.6
Q ss_pred cEEEEEEEecCCCEEEEEEecCC----CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 014873 222 PVVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP 297 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~~----~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p 297 (417)
.++.+++.+ +++|||+||.+. .+|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+.. .
T Consensus 7 ~~v~~vi~~--~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~---~ 81 (140)
T 3gwy_A 7 EVVAAVIRL--GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPD---F 81 (140)
T ss_dssp EEEEEEEEE--TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSS---C
T ss_pred EEEEEEEEe--CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCC---c
Confidence 344455554 689999999853 5789999999999999999999999999999999888888877665432 2
Q ss_pred cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873 298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKA 343 (417)
Q Consensus 298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a 343 (417)
...+..|.+....+.+ +.+|..+++|++++++.++...+..++.
T Consensus 82 ~~~~~~f~~~~~~~~~--~~~E~~~~~W~~~~el~~~~~~~~~~~i 125 (140)
T 3gwy_A 82 EITMHAFLCHPVGQRY--VLKEHIAAQWLSTREMAILDWAEADKPI 125 (140)
T ss_dssp CEEEEEEEEEECCSCC--CCCSSCEEEEECHHHHTTSCBCGGGHHH
T ss_pred eEEEEEEEEEecCCcc--cccccceeEeccHHHHhhCCCCcccHHH
Confidence 3566667776655433 3578999999999999985444444443
No 22
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.75 E-value=2.4e-17 Score=144.21 Aligned_cols=97 Identities=25% Similarity=0.397 Sum_probs=78.3
Q ss_pred CCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEeccc
Q 014873 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE 312 (417)
Q Consensus 233 ~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~~ 312 (417)
+++|||+||.....|.|.+|||++|+|||+++||+||++||||+++....+++...+.... ....+.+.|.+......
T Consensus 15 ~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~ 92 (153)
T 3shd_A 15 EGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPD--KTPFLRFLFAIELEQIC 92 (153)
T ss_dssp TTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTT--SCCEEEEEEEEECSSCC
T ss_pred CCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCC--CceEEEEEEEEEccccC
Confidence 6899999997556789999999999999999999999999999999887777776555431 23455666777655433
Q ss_pred -ccCCcccccceEEEehhhH
Q 014873 313 -INVDKEELEDARWHSREDV 331 (417)
Q Consensus 313 -~~~~~~E~~~a~Wf~~del 331 (417)
...+++|+.+++|++++++
T Consensus 93 ~~~~~~~E~~~~~W~~~~el 112 (153)
T 3shd_A 93 PTQPHDSDIDCCRWVSAEEI 112 (153)
T ss_dssp CCCCCSTTCCEEEEECHHHH
T ss_pred cCCCCcccceeeEEecHHHh
Confidence 4556789999999999999
No 23
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.75 E-value=2.4e-17 Score=151.85 Aligned_cols=126 Identities=22% Similarity=0.265 Sum_probs=84.8
Q ss_pred ccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295 (417)
Q Consensus 216 ~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~ 295 (417)
.+++....|.+++++.++++|||+||....+|.|++|||+||+|||+++||+||++||||+.+.....++.......+..
T Consensus 21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 100 (199)
T 3h95_A 21 QSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGA 100 (199)
T ss_dssp -----CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-----
T ss_pred ccCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCC
Confidence 44555666777777766789999999866689999999999999999999999999999999876665553221111111
Q ss_pred CCcEEEEEEEEEEe--cccccCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873 296 MPCQLMVGFYAYAK--SFEINVDKEELEDARWHSREDVKKALTFAEYIK 342 (417)
Q Consensus 296 ~p~~l~i~f~a~~~--~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~ 342 (417)
.....+.|.+... ...+.++++|+.+++|++++++.++.....+..
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~ 148 (199)
T 3h95_A 101 -FGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITS 148 (199)
T ss_dssp -----CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHH
T ss_pred -ceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcChHHH
Confidence 1122233344433 334556678999999999999998654444433
No 24
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.75 E-value=1.7e-18 Score=152.45 Aligned_cols=111 Identities=27% Similarity=0.319 Sum_probs=77.1
Q ss_pred cCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEe-----ecCCCCC
Q 014873 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ-----PWPVGPN 294 (417)
Q Consensus 220 ~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~-----~~~~~~~ 294 (417)
+.+++.+++++ .+++|||++|. .|.|.+|||+||+|||+++||+||++||||+++..+.+++.. .+.+...
T Consensus 20 ~~~~v~~ii~~-~~~~vLL~~r~---~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 95 (153)
T 3eds_A 20 FXPSVAAVIKN-EQGEILFQYPG---GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYSNG 95 (153)
T ss_dssp EEEEEEEEEBC-TTCCEEEECC------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECTTS
T ss_pred EeeeEEEEEEc-CCCeEEEEEcC---CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeeecCCC
Confidence 34555555655 46899998887 789999999999999999999999999999999887777754 2222222
Q ss_pred CCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873 295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 295 ~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~ 334 (417)
.....+++.|.+....+++..+++|+.+++|+++++++++
T Consensus 96 ~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~l 135 (153)
T 3eds_A 96 DEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPL 135 (153)
T ss_dssp CEEEEEEEEEEEEEEEECCC-------CEEEECGGGCCCB
T ss_pred CeEEEEEEEEEEEecCCccccCCCcEEEEEEECHHHCchh
Confidence 1122356677777766666667789999999999999974
No 25
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.74 E-value=8.7e-18 Score=153.03 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=88.1
Q ss_pred CCEEEEEEecC--------CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEE
Q 014873 233 NDRVLLSRQSR--------FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF 304 (417)
Q Consensus 233 ~~kVLL~rr~~--------~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f 304 (417)
+++|||++|.+ ...|.|.+|||+||+|||+++||+||++||||+++..+.+++.+.++..... ...+.+.|
T Consensus 45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 123 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPR-GWIISRAF 123 (187)
T ss_dssp EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTT-SSEEEEEE
T ss_pred CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCC-CCEEEEEE
Confidence 36899999942 4678999999999999999999999999999999988888887765532211 23556666
Q ss_pred EEEEeccc--ccCCcccccceEEEehhhHHHH-hhhhhHHHHHHHHHHHHHH
Q 014873 305 YAYAKSFE--INVDKEELEDARWHSREDVKKA-LTFAEYIKAQRTAAAKVEQ 353 (417)
Q Consensus 305 ~a~~~~~~--~~~~~~E~~~a~Wf~~del~~~-L~~~~~~~a~~~a~~~l~~ 353 (417)
++.+.... .....+|+.+++||+++++.++ +.++ ....+..++.+++.
T Consensus 124 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~-~~~il~~a~~~l~~ 174 (187)
T 3i9x_A 124 YAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFD-HLDMLKKAFSAITE 174 (187)
T ss_dssp EEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTT-HHHHHHHHHHHHHH
T ss_pred EEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCcc-HHHHHHHHHHHHHh
Confidence 66654322 1234578999999999999974 5544 44555666666655
No 26
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.74 E-value=6.2e-18 Score=156.94 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=92.9
Q ss_pred CCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 014873 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (417)
Q Consensus 212 C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~ 291 (417)
|....|++...+|.++|++ +++|||+||. .|.|++|||++|+|||+++||+||++||||+++..+.+++...+..
T Consensus 61 ~~~~~y~~~~~~v~~vv~~--~~~vLLvrr~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~ 135 (206)
T 3o8s_A 61 CNETGYQTPKLDTRAAIFQ--EDKILLVQEN---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHK 135 (206)
T ss_dssp -------CCEEEEEEEEEE--TTEEEEEECT---TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHH
T ss_pred ccccCCCCCCccEEEEEEE--CCEEEEEEec---CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccc
Confidence 3445578777777777776 4899999987 7899999999999999999999999999999998888887765321
Q ss_pred C--CCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHH
Q 014873 292 G--PNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAA 349 (417)
Q Consensus 292 ~--~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~ 349 (417)
. +........+.|.+....+.+..+ .|..+++||++++++++.......+.+..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~ 194 (206)
T 3o8s_A 136 NNPAKSAHRVTKVFILCRLLGGEFQPN-SETVASGFFSLDDLPPLYLGKNTAEQLALCLE 194 (206)
T ss_dssp HCC-----CEEEEEEEEEEEEECCCCC-SSCSEEEEECTTSCCCBCTTTCCHHHHHHHHH
T ss_pred cCCCCCCceEEEEEEEEEecCCeecCC-CCceEEEEEeHHHhhhccCCCchHHHHHHHHH
Confidence 1 111123445556666655555544 89999999999999986555555555544444
No 27
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.74 E-value=2.6e-17 Score=142.54 Aligned_cols=124 Identities=20% Similarity=0.140 Sum_probs=87.0
Q ss_pred CcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC-CCCCCCC
Q 014873 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-VGPNSMP 297 (417)
Q Consensus 219 r~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~-~~~~~~p 297 (417)
+..+.+.++|++.++++|||+||. .|.|.+|||++|+|||+++||+||++||||+.+..+.+++..... +......
T Consensus 16 ~~~~~~~~vi~~~~~~~vLl~~r~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 92 (148)
T 2azw_A 16 QTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT 92 (148)
T ss_dssp EECCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTE
T ss_pred eeeeEEEEEEECCCCCeEEEEEcC---CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCc
Confidence 344556666666546899999974 489999999999999999999999999999999877766654211 1111111
Q ss_pred --cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHH
Q 014873 298 --CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRT 346 (417)
Q Consensus 298 --~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~ 346 (417)
...+..|.+....... ...+|+.+++|++++++.+++..+..+..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 142 (148)
T 2azw_A 93 AYYNPGYFYVANTWRQLS-EPLERTNTLHWVAPEEAVRLLKRGSHRWAVEK 142 (148)
T ss_dssp EEEEEEEEEEEEEEEECS-SCC-CCSEEEEECHHHHHHHBSCHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCcCCc-CCCCceeeEEEeeHHHHHhhhcchhHHHHHHH
Confidence 2334555555543332 23478889999999999998877766655443
No 28
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.74 E-value=4.1e-17 Score=142.32 Aligned_cols=101 Identities=27% Similarity=0.329 Sum_probs=77.9
Q ss_pred CCEEEEEEecCCC-CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecc
Q 014873 233 NDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF 311 (417)
Q Consensus 233 ~~kVLL~rr~~~~-~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~ 311 (417)
+++|||+||.+.. +|.|.+|||+||+|||+++||+||++||||+++....+++...+..... ....+++.|.+.....
T Consensus 18 ~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~ 96 (153)
T 2b0v_A 18 DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASN-GTTYLRFTFSGQVVSF 96 (153)
T ss_dssp TTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTT-TEEEEEEEEEEEEEEE
T ss_pred CCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCC-CcEEEEEEEEEEeCCC
Confidence 6899999998644 7899999999999999999999999999999998777777664443211 1234455666665443
Q ss_pred cc-cCCcccccceEEEehhhHHHH
Q 014873 312 EI-NVDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 312 ~~-~~~~~E~~~a~Wf~~del~~~ 334 (417)
.. ...++|+.+++|++++++.++
T Consensus 97 ~~~~~~~~e~~~~~W~~~~el~~~ 120 (153)
T 2b0v_A 97 DPDRKLDTGIVRAAWFSIDEIRAK 120 (153)
T ss_dssp CTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred CCCCCCCCCeeeEEEecHHHHhhh
Confidence 32 345678999999999999984
No 29
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.74 E-value=2.8e-17 Score=142.26 Aligned_cols=127 Identities=19% Similarity=0.275 Sum_probs=86.7
Q ss_pred cccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeecc--EEEEEEe---ec
Q 014873 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQ---PW 289 (417)
Q Consensus 215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~--v~~~~s~---~~ 289 (417)
+.|++. .+|.+++++.++++|||++|... +|.|.+|||++|+|||+++||+||++||||+.+.. +.+++.. .+
T Consensus 4 m~~~~~-~~v~~~i~~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 81 (150)
T 2o1c_A 4 KVYKRP-VSILVVIYAQDTKRVLMLQRRDD-PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEF 81 (150)
T ss_dssp CCCBCS-EEEEEEEEETTTCEEEEEECSSS-TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEE
T ss_pred ccccCc-eEEEEEEEeCCCCEEEEEEecCC-CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeee
Confidence 345543 34555666654589999998754 68999999999999999999999999999998854 2233221 11
Q ss_pred --------CCCCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHH
Q 014873 290 --------PVGPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQR 345 (417)
Q Consensus 290 --------~~~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~ 345 (417)
.+.. ......+..|.+....... ...+|+.+++|++++++.++...+..+.++.
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~ 143 (150)
T 2o1c_A 82 EIFSHLRHRYAP-GVTRNTESWFCLALPHERQ-IVFTEHLAYKWLDAPAAAALTKSWSNRQAIE 143 (150)
T ss_dssp ECCGGGGGGBCT-TCCEEEEEEEEEEESSCCC-CCCSSSSCEEEEEHHHHHHHCSCHHHHHHHH
T ss_pred eeecccccccCC-CCcceEEEEEEEEcCCCCC-cChhHhhccEeecHHHHHhhhcCHHHHHHHH
Confidence 1111 1123556667666654333 2347899999999999999766555554444
No 30
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.73 E-value=4.3e-17 Score=145.91 Aligned_cols=119 Identities=29% Similarity=0.327 Sum_probs=83.2
Q ss_pred ccCCcCcEEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 014873 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP 293 (417)
Q Consensus 216 ~ypr~~pvVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~ 293 (417)
.|.+..++|.+++++ +++|||++|.+. .+|.|.+|||++|+|||+++||+||++||||+ +..+.+++......+
T Consensus 29 ~~~~~~~~v~vii~~--~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~- 104 (170)
T 1v8y_A 29 EIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPG- 104 (170)
T ss_dssp EEEEECCEEEEEEEE--TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTT-
T ss_pred EEEecCCeEEEEEEE--CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCC-
Confidence 333334566666776 689999998763 46899999999999999999999999999999 888888776543222
Q ss_pred CCCCcEEEEEEEEEEec-ccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873 294 NSMPCQLMVGFYAYAKS-FEINVDKEELEDARWHSREDVKKALTFAEY 340 (417)
Q Consensus 294 ~~~p~~l~i~f~a~~~~-~~~~~~~~E~~~a~Wf~~del~~~L~~~~~ 340 (417)
.....+..|++.... .....+++|+.+++|++++++.+++..+.+
T Consensus 105 --~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~ 150 (170)
T 1v8y_A 105 --FTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEV 150 (170)
T ss_dssp --TBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTSC
T ss_pred --ccccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCCCE
Confidence 123455566665433 344456789999999999999997765444
No 31
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.72 E-value=3.2e-17 Score=145.06 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=86.1
Q ss_pred cCCcCcEEEEEEEecCCCEEEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873 217 YPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295 (417)
Q Consensus 217 ypr~~pvVivlvi~~~~~kVLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~ 295 (417)
.++...+|.++|++ +++|||+||.+. ..|.|.+|||+||+|||+++||+||++||||+++..+.+++...+.+...
T Consensus 25 ~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~- 101 (157)
T 4dyw_A 25 TEQPRVGCGAAIVR--DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAAN- 101 (157)
T ss_dssp -CCCEEEEEEEEEE--TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETTT-
T ss_pred CCCceeEEEEEEEE--CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccCC-
Confidence 33444555566666 689999999863 57899999999999999999999999999999998777777665543211
Q ss_pred CCcEEEEEEEEEEecccc-cCCcccccceEEEehhhHHHHh
Q 014873 296 MPCQLMVGFYAYAKSFEI-NVDKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 296 ~p~~l~i~f~a~~~~~~~-~~~~~E~~~a~Wf~~del~~~L 335 (417)
....+++.|.+....... ..+++|+.+++|++++++.+.+
T Consensus 102 ~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~l 142 (157)
T 4dyw_A 102 GEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQPL 142 (157)
T ss_dssp TEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCSSB
T ss_pred CcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccccc
Confidence 123455666666544443 3345789999999999999844
No 32
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.72 E-value=6.1e-17 Score=141.95 Aligned_cols=109 Identities=26% Similarity=0.318 Sum_probs=82.7
Q ss_pred cEEEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~ 298 (417)
.+|.+++++ .+++|||++|.+ ..+|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+.. ..
T Consensus 9 ~~v~~vi~~-~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~---~~ 84 (153)
T 3grn_A 9 ISVYALIRN-EKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTE---KK 84 (153)
T ss_dssp EEEEEEEEC-TTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSS---CE
T ss_pred EEEEEEEEc-CCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCC---ce
Confidence 344455554 368999999984 35799999999999999999999999999999998776666665544321 23
Q ss_pred EEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L 335 (417)
..++.|.+....+.+.. .+|..+++|++++++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~ 120 (153)
T 3grn_A 85 VIAIVFDGGYVVADVKL-SYEHIEYSWVSLEKILGME 120 (153)
T ss_dssp EEEEEEEEEECCCCCCC-CTTEEEEEEECHHHHTTCS
T ss_pred EEEEEEEEEecCCcEec-CCCcceEEEEEHHHhhhcc
Confidence 55666666655555544 3788999999999999853
No 33
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.71 E-value=2.8e-17 Score=145.99 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=87.6
Q ss_pred cCcEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873 220 VDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (417)
Q Consensus 220 ~~pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~ 298 (417)
+..++.+++++.++++|||+||.+ .+.|.|++|||+||+|||+++||+||++||||+.+..+.+++...+.+... ...
T Consensus 9 ~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-~~~ 87 (161)
T 3exq_A 9 VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDR-QHR 87 (161)
T ss_dssp EEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSC-SSE
T ss_pred ceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCC-CeE
Confidence 345566666664336999999885 456789999999999999999999999999999998888877776654222 123
Q ss_pred EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKA 343 (417)
Q Consensus 299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a 343 (417)
..++.|.+...... +...|..+++|++++++.++...+..++.
T Consensus 88 ~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 130 (161)
T 3exq_A 88 KLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAASLPEF 130 (161)
T ss_dssp EEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTTHHHH
T ss_pred EEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChHHHHH
Confidence 44555555444443 34578889999999999986444444443
No 34
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.71 E-value=2.8e-17 Score=148.54 Aligned_cols=119 Identities=24% Similarity=0.216 Sum_probs=87.3
Q ss_pred cCCcCcEEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC
Q 014873 217 YPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN 294 (417)
Q Consensus 217 ypr~~pvVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~ 294 (417)
|.+...+|.+++++. +++|||++|.+. .+|.|++|||++|+|||+++||+||++||||+++..+.+++......+
T Consensus 37 ~~~~~~~v~v~i~~~-~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-- 113 (182)
T 2yvp_A 37 RPGPVAASFVLPVTE-RGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPS-- 113 (182)
T ss_dssp BCSSCEEEEEEEBCT-TSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTT--
T ss_pred EEecCCEEEEEEEcC-CCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCC--
Confidence 333344555666654 689999998753 467999999999999999999999999999999988877765432211
Q ss_pred CCCcEEEEEEEEEEe--cccccCCcccccceEEEehhhHHHHhhhhh
Q 014873 295 SMPCQLMVGFYAYAK--SFEINVDKEELEDARWHSREDVKKALTFAE 339 (417)
Q Consensus 295 ~~p~~l~i~f~a~~~--~~~~~~~~~E~~~a~Wf~~del~~~L~~~~ 339 (417)
.....+..|++... ......+.+|+.+++|++++++.+++..+.
T Consensus 114 -~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 159 (182)
T 2yvp_A 114 -FTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGE 159 (182)
T ss_dssp -TBCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTTC
T ss_pred -ccccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence 12345556666532 234445678999999999999999776543
No 35
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.71 E-value=8.4e-17 Score=148.33 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=75.7
Q ss_pred ecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEe
Q 014873 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK 309 (417)
Q Consensus 230 ~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~ 309 (417)
...+++|||+||.+. +|.|.+|||+||+|||+++||+||++||||+++..+.+++...+.. ....+..|++.+.
T Consensus 50 ~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~-----~~~~~~~f~~~~~ 123 (194)
T 2fvv_A 50 SESEEEVLLVSSSRH-PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE-----RKHRTYVYVLIVT 123 (194)
T ss_dssp STTCCEEEEEECSSC-TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT-----TTEEEEEEEEEEE
T ss_pred ECCCCEEEEEEEeCC-CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC-----CceEEEEEEEEEc
Confidence 344689999998753 5899999999999999999999999999999998888777766432 1234455555543
Q ss_pred cccccC--CcccccceEEEehhhHHHHhhhh
Q 014873 310 SFEINV--DKEELEDARWHSREDVKKALTFA 338 (417)
Q Consensus 310 ~~~~~~--~~~E~~~a~Wf~~del~~~L~~~ 338 (417)
...... ..++..+++||+++++++++...
T Consensus 124 ~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~ 154 (194)
T 2fvv_A 124 EVLEDWEDSVNIGRKREWFKIEDAIKVLQYH 154 (194)
T ss_dssp EECSSCHHHHHHCCCEEEEEHHHHHHHHTTT
T ss_pred cccCCCCCcccccceEEEEEHHHHHHHHhcC
Confidence 211111 11244789999999999977644
No 36
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.70 E-value=1.2e-16 Score=147.45 Aligned_cols=116 Identities=20% Similarity=0.189 Sum_probs=87.0
Q ss_pred EEEEEEEecCCCEEEEEEecCCC--CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873 223 VVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~~~--~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l 300 (417)
+|++++++. + +|||+||.+.. ++.|++|||+||+|||+++||+||++||||+++..+.+++......+ .....
T Consensus 51 av~vl~~~~-~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~---~~~~~ 125 (198)
T 1vhz_A 51 AVMIVPIVD-D-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS---YFSSK 125 (198)
T ss_dssp EEEEEEEET-T-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT---TCCCE
T ss_pred EEEEEEEEC-C-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCC---ccCcE
Confidence 444555554 3 99999987633 46899999999999999999999999999999988888877653322 12334
Q ss_pred EEEEEEEEec-ccccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873 301 MVGFYAYAKS-FEINVDKEELEDARWHSREDVKKALTFAEYIKA 343 (417)
Q Consensus 301 ~i~f~a~~~~-~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a 343 (417)
+..|++.... .....+++|..+++|++++++.+++..+.+..+
T Consensus 126 ~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~i~~~ 169 (198)
T 1vhz_A 126 MNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEA 169 (198)
T ss_dssp EEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCTTTCBH
T ss_pred EEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcCCCCCH
Confidence 5556666433 334456788999999999999998887765543
No 37
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.70 E-value=1.1e-16 Score=144.61 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=79.1
Q ss_pred CCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEec
Q 014873 232 ENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS 310 (417)
Q Consensus 232 ~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~ 310 (417)
.+++|||++|.+ ...|.|.+|||+||+|||+++||+||++||||+++..+.+++...+.+.... ....+..|.+....
T Consensus 34 ~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~f~~~~~~ 112 (176)
T 3q93_A 34 QPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEP-ELMDVHVFCTDSIQ 112 (176)
T ss_dssp CSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCS-CEEEEEEEEESCEE
T ss_pred eCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCC-cEEEEEEEEEECCC
Confidence 478999998865 4578999999999999999999999999999999988888887765543221 23445556554433
Q ss_pred ccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873 311 FEINVDKEELEDARWHSREDVKKALTFAEY 340 (417)
Q Consensus 311 ~~~~~~~~E~~~a~Wf~~del~~~L~~~~~ 340 (417)
+.+ ...|..+++|++++++++....+..
T Consensus 113 ~~~--~~~e~~~~~W~~~~el~~~~~~~~~ 140 (176)
T 3q93_A 113 GTP--VESDEMRPCWFQLDQIPFKDMWPDD 140 (176)
T ss_dssp SCC--CCCSSEEEEEEETTCCCGGGBCTTH
T ss_pred CCc--CCCcceeeEEeeHHHccccccCcch
Confidence 333 3456778899999999975433333
No 38
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.70 E-value=1.2e-16 Score=140.26 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=81.8
Q ss_pred cEEEEEEEecCCCEEEEEEecC-CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCCCC---CC
Q 014873 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVGP---NS 295 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~-~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v--~~v~~~~s~~~~~~~---~~ 295 (417)
.+|.+++++ .+++|||+||.+ ..+|.|++|||++|+|||+++||+||++||||+.+ ..+.+++...+.+.. +.
T Consensus 19 ~~v~~vi~~-~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
T 1rya_A 19 VSLDFIVEN-SRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT 97 (160)
T ss_dssp EEEEEEEEC-TTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBS
T ss_pred EEEEEEEEc-CCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCC
Confidence 345555555 368999999875 34789999999999999999999999999999995 355665554332211 11
Q ss_pred --CCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873 296 --MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 296 --~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~ 334 (417)
....+++.|.+......+..+.+|+.+++|++++++.+.
T Consensus 98 ~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 138 (160)
T 1rya_A 98 DFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLAS 138 (160)
T ss_dssp SSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHC
T ss_pred CcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhc
Confidence 113456667676655555556789999999999999973
No 39
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.70 E-value=1.2e-16 Score=141.79 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=74.0
Q ss_pred EEEEEEecCCCEEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEe------ecCCCCC
Q 014873 224 VIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ------PWPVGPN 294 (417)
Q Consensus 224 Vivlvi~~~~~kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~------~~~~~~~ 294 (417)
+++++++. +++|||+||.. ..+|.|++|||++|+|||+++||+||++||||+.+....++... .+.+...
T Consensus 30 ~~~~ii~~-~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3oga_A 30 IVCPLIQN-DGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADG 108 (165)
T ss_dssp EEEEEEEE-TTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--C
T ss_pred EEEEEEeC-CCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCCC
Confidence 33444444 68999998874 34689999999999999999999999999999998655443211 1112111
Q ss_pred CCC--cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873 295 SMP--CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEY 340 (417)
Q Consensus 295 ~~p--~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~ 340 (417)
... ..++..|.+......+.. .+|+.+++|++++++.++...+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~ 155 (165)
T 3oga_A 109 RQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALYDLNVAT 155 (165)
T ss_dssp CEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGSCBCHHH
T ss_pred CceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhCCCCHHH
Confidence 111 122334444444444443 378999999999999985333333
No 40
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.70 E-value=8e-17 Score=142.28 Aligned_cols=109 Identities=28% Similarity=0.350 Sum_probs=80.2
Q ss_pred EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE-------------eec
Q 014873 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS-------------QPW 289 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s-------------~~~ 289 (417)
++.++|++ +++|||+||.+ .|.|.+|||+||+|||+++||+||++||||+++..+.+++. .+.
T Consensus 8 ~v~~vi~~--~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (159)
T 3f6a_A 8 TVSVFIVC--KDKVLLHLHKK--AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLIN 83 (159)
T ss_dssp EEEEEEEE--TTEEEEEECSS--SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEECC
T ss_pred EEEEEEEE--CCEEEEEEcCC--CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccccccC
Confidence 44455555 58999999875 68999999999999999999999999999998865544421 111
Q ss_pred CC-----CCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873 290 PV-----GPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 290 ~~-----~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L 335 (417)
+. ........+.+.|.+....+.+..+++|..+++|++++++.++.
T Consensus 84 p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 134 (159)
T 3f6a_A 84 PIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAH 134 (159)
T ss_dssp CSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCS
T ss_pred ccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCc
Confidence 10 00011235566777777666666677899999999999999854
No 41
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.69 E-value=1.6e-16 Score=147.99 Aligned_cols=125 Identities=26% Similarity=0.255 Sum_probs=88.3
Q ss_pred CcccCCcCcEEEEEEEecCCCEEEEEEecCCC-------CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 014873 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286 (417)
Q Consensus 214 ~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~-------~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s 286 (417)
+..+.+.+ +|.+++++.++++|||+|+.+.+ ++.|++|||+||+|||+++||+||++||||+.+..+.+++.
T Consensus 51 r~~~~~~~-av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~ 129 (209)
T 1g0s_A 51 REIFERGH-AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS 129 (209)
T ss_dssp EEEEECCC-EEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred EEEEeCCC-EEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence 34455544 55556666557899999887643 46799999999999999999999999999999988888877
Q ss_pred eecCCCCCCCCcEEEEEEEEEEecc---c--ccCCcccccceEEEehhhHHHHhhhhhHHH
Q 014873 287 QPWPVGPNSMPCQLMVGFYAYAKSF---E--INVDKEELEDARWHSREDVKKALTFAEYIK 342 (417)
Q Consensus 287 ~~~~~~~~~~p~~l~i~f~a~~~~~---~--~~~~~~E~~~a~Wf~~del~~~L~~~~~~~ 342 (417)
.....+ .....+..|++..... . ...+++|..++.|++++++.+++..+.+.+
T Consensus 130 ~~~~~g---~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~i~d 187 (209)
T 1g0s_A 130 FLASPG---GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN 187 (209)
T ss_dssp EESCTT---TBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCB
T ss_pred EecCCC---ccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCC
Confidence 522211 1224556677764321 1 134567888999999999999887665543
No 42
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.69 E-value=1.6e-16 Score=138.12 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=77.3
Q ss_pred EEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873 226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (417)
Q Consensus 226 vlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~ 303 (417)
+++++. +++|||++|.. ..+|.|++|||++|+||++++||+||++||||+.+....+++...+.+.. ....+..
T Consensus 26 ~~i~~~-~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~ 101 (153)
T 3ees_A 26 AGFLRK-DGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGD---VGILILF 101 (153)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETT---EEEEEEE
T ss_pred EEEEEE-CCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCC---CeEEEEE
Confidence 344443 68999999875 45689999999999999999999999999999998776666655444321 1233444
Q ss_pred EEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873 304 FYAYAKSFEINVDKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L 335 (417)
|.+...... ++.+|..+++|++++++.++.
T Consensus 102 ~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~ 131 (153)
T 3ees_A 102 YEILYWKGE--PRAKHHMMLEWIHPEELKHRN 131 (153)
T ss_dssp EEECEEESC--CCCSSSSEEEEECGGGGGGSC
T ss_pred EEEEECCCC--cCCCccceEEEecHHHhhhCC
Confidence 555444333 456788999999999999853
No 43
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.68 E-value=3.1e-16 Score=143.80 Aligned_cols=123 Identities=24% Similarity=0.260 Sum_probs=88.1
Q ss_pred cccCCcCcEEEEEEEecCCCEEEEEEecCC--------CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 014873 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRF--------VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286 (417)
Q Consensus 215 ~~ypr~~pvVivlvi~~~~~kVLL~rr~~~--------~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s 286 (417)
..+++.+.| .+++++.++++|||+|+.+. .++.|++|||++| |||+++||+||++||||+++..+.+++.
T Consensus 40 ~~~~~~~av-~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~ 117 (191)
T 3o6z_A 40 EVYDRGNGA-TILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFE 117 (191)
T ss_dssp EEEECCCEE-EEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEE
T ss_pred EEEecCCEE-EEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEE
Confidence 344554444 45556655689999998863 5678999999999 9999999999999999999988888887
Q ss_pred eecCCCCCCCCcEEEEEEEEEEeccc-----ccCCcccccceEEEehhhHHHHhhhhhHHHH
Q 014873 287 QPWPVGPNSMPCQLMVGFYAYAKSFE-----INVDKEELEDARWHSREDVKKALTFAEYIKA 343 (417)
Q Consensus 287 ~~~~~~~~~~p~~l~i~f~a~~~~~~-----~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a 343 (417)
.....+ .....+..|++...... ... ++|..+++|++++++.+++..+.+..+
T Consensus 118 ~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~~g~i~d~ 175 (191)
T 3o6z_A 118 LYMSPG---GVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMIKTGEIRDG 175 (191)
T ss_dssp EESCTT---TBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHHHSSCCBH
T ss_pred EEeCCC---ccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHHHcCCCCCH
Confidence 543322 22345566766654321 122 678999999999999998877665443
No 44
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.68 E-value=2.1e-16 Score=139.08 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=77.3
Q ss_pred CcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEE--eecCCCC-----
Q 014873 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS--QPWPVGP----- 293 (417)
Q Consensus 221 ~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s--~~~~~~~----- 293 (417)
..+|.+++++. +++|||+||.+ .+|.|++|||+||+|||+++||+||++||||+++..+..... ..+.+..
T Consensus 14 ~~~v~~~i~~~-~~~vLl~~r~~-~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (165)
T 1f3y_A 14 RRNVGICLMNN-DKKIFAASRLD-IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREK 91 (165)
T ss_dssp CCEEEEEEECT-TSCEEEEEETT-EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHH
T ss_pred eeeEEEEEECC-CCcEEEEecCC-CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCcccccc
Confidence 34555666664 68999999975 348999999999999999999999999999998765433221 1111100
Q ss_pred ------CCCCcEEEEEEEEEEecc--cccC-----CcccccceEEEehhhHHHHh
Q 014873 294 ------NSMPCQLMVGFYAYAKSF--EINV-----DKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 294 ------~~~p~~l~i~f~a~~~~~--~~~~-----~~~E~~~a~Wf~~del~~~L 335 (417)
.......+..|.+.+... .+.+ +++|+.+++|++++++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 146 (165)
T 1f3y_A 92 LNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLT 146 (165)
T ss_dssp HGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHB
T ss_pred ccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHh
Confidence 000112445566655433 3333 35689999999999999965
No 45
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.68 E-value=5.7e-16 Score=139.34 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=82.1
Q ss_pred EEEEEEEecCCCEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~ 298 (417)
++.+++++. +++|||++|.. ..+|.|.+ |||++|+|||+++||+||++||||+.+..+.+++.+.+..+ ...
T Consensus 39 ~~~v~i~~~-~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~---~~~ 114 (180)
T 2fkb_A 39 ATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDK---NCR 114 (180)
T ss_dssp EEEEEEECS-SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEET---TEE
T ss_pred EEEEEEECC-CCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCC---Cce
Confidence 444555553 67999999874 34789999 99999999999999999999999999877777776654432 123
Q ss_pred EEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L 335 (417)
..+..|.+. ....+..+++|+.+++|++++++.+++
T Consensus 115 ~~~~~f~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~ 150 (180)
T 2fkb_A 115 VWGALFSCV-SHGPFALQEDEVSEVCWLTPEEITARC 150 (180)
T ss_dssp EEEEEEEEE-CCCCCCCCTTTEEEEEEECHHHHHTTG
T ss_pred EEEEEEEEe-cCCCcCCChhHhheEEEecHHHHHHHH
Confidence 445556555 344555667899999999999999965
No 46
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.68 E-value=2.6e-16 Score=135.77 Aligned_cols=113 Identities=22% Similarity=0.250 Sum_probs=79.2
Q ss_pred cEEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCCCC
Q 014873 222 PVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNSMP 297 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v--~~~~s~~~~~~~~~~p 297 (417)
.++.+++++ .+++|||+||.. ..+|.|++|||++|+||++++||+||++||||+.+... ..+....+.+. ..
T Consensus 9 ~~~~~vi~~-~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~---~~ 84 (144)
T 3r03_A 9 LVTAAALID-PDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYD---TF 84 (144)
T ss_dssp EEEEEEEBC-TTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECS---SS
T ss_pred EEEEEEEEc-CCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCC---Ce
Confidence 344445554 368999999874 45689999999999999999999999999999998654 44443333332 12
Q ss_pred cEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhH
Q 014873 298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEY 340 (417)
Q Consensus 298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~ 340 (417)
...+..|.+..... .....|..+++|++++++.++......
T Consensus 85 ~~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~ 125 (144)
T 3r03_A 85 HLLMPLYACRSWRG--RATAREGQTLAWVRAERLREYPMPPAD 125 (144)
T ss_dssp EEEEEEEEECCCBS--CCCCCSSCEEEEECGGGGGGSCCCTTT
T ss_pred EEEEEEEEEEecCC--ccCCCCcceEEEEeHHHhccCCCCcch
Confidence 34445555544433 334578899999999999985333333
No 47
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.68 E-value=5.2e-16 Score=133.08 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=78.4
Q ss_pred CCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEEEEEec
Q 014873 233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS 310 (417)
Q Consensus 233 ~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~ 310 (417)
+++|||+||.. ..+|.|++|||++|+|||+++||+||++||||+.+..+.+++...+.+.. ....+..|.+....
T Consensus 19 ~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 95 (140)
T 2rrk_A 19 DGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSG---RIIHLHAWHVPDFH 95 (140)
T ss_dssp TTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETT---EEEEEEEEEESEEE
T ss_pred CCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCC---cEEEEEEEEEEeeC
Confidence 68999999864 34699999999999999999999999999999999877777665544321 12334455544433
Q ss_pred ccccCCcccccceEEEehhhHHHHhhhhhHHHHHH
Q 014873 311 FEINVDKEELEDARWHSREDVKKALTFAEYIKAQR 345 (417)
Q Consensus 311 ~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~ 345 (417)
.. ....|+.+++|++++++.++.......+.+.
T Consensus 96 ~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 128 (140)
T 2rrk_A 96 GT--LQAHEHQALVWCSPEEALQYPLAPADIPLLE 128 (140)
T ss_dssp EC--CCCSSCSCEEEECHHHHTTSCCCTTHHHHHH
T ss_pred CC--cCCCccceeEEeCHHHHhhCCCChhHHHHHH
Confidence 32 3456888999999999998543334444433
No 48
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.68 E-value=2.8e-16 Score=138.44 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=80.2
Q ss_pred EEEEEEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCCCCc
Q 014873 223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNSMPC 298 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v--~~~~s~~~~~~~~~~p~ 298 (417)
++.+++++ .+++|||+||.. ..+|.|.+|||++|+||++++||+||++||||+.+... ..+....+.+.. ..
T Consensus 31 ~~~~~i~~-~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~---~~ 106 (158)
T 3hhj_A 31 VVACALLD-QDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYET---FH 106 (158)
T ss_dssp EEEEEEBC-TTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS---CE
T ss_pred EEEEEEEe-CCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC---cE
Confidence 44444554 468999999874 45789999999999999999999999999999998654 334443333321 12
Q ss_pred EEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHH
Q 014873 299 QLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQ 344 (417)
Q Consensus 299 ~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~ 344 (417)
..+..|.+..... ..+..|..+++|++++++.++......++.+
T Consensus 107 ~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~il 150 (158)
T 3hhj_A 107 LLMPLYFCSHYKG--VAQGREGQNLKWIFINDLDKYPMPEADKPLV 150 (158)
T ss_dssp EEEEEEEESCCBS--CCCCTTSCEEEEEEGGGGGGSCCCTTTHHHH
T ss_pred EEEEEEEEEECCC--ccCCccccceEEEcHHHHhhCCCCcchHHHH
Confidence 3444444443333 3445788999999999998854444444433
No 49
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.67 E-value=4.2e-16 Score=139.11 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=83.0
Q ss_pred CcEEEEEEEecCCCEEEEEEecC---CCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCeecc--EEEEEEee-cCCCC
Q 014873 221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQP-WPVGP 293 (417)
Q Consensus 221 ~pvVivlvi~~~~~kVLL~rr~~---~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v~~--v~~~~s~~-~~~~~ 293 (417)
..++.+++++. +++|||+||.. ..+|.|+ +|||+||+|||+++||+||++||||+.+.. +.+++... +....
T Consensus 34 ~~~v~v~i~~~-~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 112 (171)
T 1q27_A 34 VRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL 112 (171)
T ss_dssp CEEEEEEEEET-TTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCC
T ss_pred ceEEEEEEECC-CCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCC
Confidence 44555566654 67999999864 2378998 999999999999999999999999999865 56776665 44322
Q ss_pred CCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873 294 NSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 294 ~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L 335 (417)
...+..|.+.. ..++.++++|+.+++|++++++.+++
T Consensus 113 ----~~~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~ 149 (171)
T 1q27_A 113 ----SSFMCVYELRS-DATPIFNPNDISGGEWLTPEHLLARI 149 (171)
T ss_dssp ----SSEEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHHHHH
T ss_pred ----ccEEEEEEEEE-CCccccCchhhheEEEecHHHHHHHH
Confidence 12556666665 45566667899999999999999753
No 50
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.67 E-value=1.6e-16 Score=144.86 Aligned_cols=115 Identities=19% Similarity=0.307 Sum_probs=82.9
Q ss_pred EEEEEEEecCCCEEEEEEecC---CCCCcEEe-eeeeccCCCCHHHHHHHHHHHHhCCeeccE-EEEEEeecC--CCCCC
Q 014873 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPWP--VGPNS 295 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~---~~~g~Wsl-PgG~VE~GEtleeAa~REv~EEtGl~v~~v-~~~~s~~~~--~~~~~ 295 (417)
+|.+++++. +++|||++|.. ..+|.|++ |||+||+|||+++||+||++||||+.+..+ .+++.+.+. +....
T Consensus 34 ~v~~~i~~~-~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
T 1hzt_A 34 AFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI 112 (190)
T ss_dssp CEEEEEECT-TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred EEEEEEEcC-CCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence 444555553 68999999864 24799999 999999999999999999999999999877 555444331 11111
Q ss_pred CCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhh
Q 014873 296 MPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAE 339 (417)
Q Consensus 296 ~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~ 339 (417)
....++..|.+... +++..+++|+.+++|++++++.+++..+.
T Consensus 113 ~~~~~~~~f~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 155 (190)
T 1hzt_A 113 VENEVCPVFAARTT-SALQINDDEVMDYQWCDLADVLHGIDATP 155 (190)
T ss_dssp EEEEECCEEEEEBC-SCCCCCTTTEEEEEEECHHHHHHHHHHCG
T ss_pred cceEEEEEEEEecC-CCCcCCccceeeEEEecHHHHHHHHHcCh
Confidence 11334555656543 45556678999999999999999766443
No 51
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=148.44 Aligned_cols=114 Identities=22% Similarity=0.233 Sum_probs=82.7
Q ss_pred cEEEEEEEecCCCEEEEEEecCCC---------------------------------CCcEEeeeeeccC-CCCHHHHHH
Q 014873 222 PVVIMLVIDRENDRVLLSRQSRFV---------------------------------PRMWSCIAGFIEP-GESLEEAVR 267 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~~~---------------------------------~g~WslPgG~VE~-GEtleeAa~ 267 (417)
.+|.+++++..+++|||+||.|++ ++.|++|||+||+ |||+++||+
T Consensus 37 ~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA~ 116 (218)
T 3q91_A 37 DSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVAC 116 (218)
T ss_dssp CEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHHH
T ss_pred CeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHHH
Confidence 455566777556899999987632 5699999999999 999999999
Q ss_pred HHHHHHhCCee--ccEEEEEEeecCCCCCCCCcEEEEEEEEEEec------ccccCCcccccceEEEehhhHHHHhhhh
Q 014873 268 RETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS------FEINVDKEELEDARWHSREDVKKALTFA 338 (417)
Q Consensus 268 REv~EEtGl~v--~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~------~~~~~~~~E~~~a~Wf~~del~~~L~~~ 338 (417)
||++||||+.+ ..+.+++......+ .....+..|++.... .....+++|..+++|++++++.+++..+
T Consensus 117 REl~EEtGl~~~~~~l~~l~~~~~~~g---~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~~g 192 (218)
T 3q91_A 117 KEAWEECGYHLAPSDLRRVATYWSGVG---LTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDP 192 (218)
T ss_dssp HHHHHHHCBCCCGGGCEEEEEEEEC------CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHHHCT
T ss_pred HHHHHHhCCccccCceEEEEEEecCCC---ccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence 99999999998 78888877543222 234566677776542 1244567899999999999999987643
No 52
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.66 E-value=1.9e-16 Score=139.70 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=81.6
Q ss_pred EEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec--------CC----
Q 014873 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW--------PV---- 291 (417)
Q Consensus 224 Vivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~--------~~---- 291 (417)
+.++|++ +++|||++|.+ .|.|.+|||++|+|||+++||+||++||||+++..+..++.... ++
T Consensus 4 ~~~vi~~--~~~vLL~~r~~--~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T 1k2e_A 4 TSGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE 79 (156)
T ss_dssp EEEECEE--TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE
T ss_pred EEEEEEE--CCEEEEEEEcC--CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccceeee
Confidence 4444555 68999999875 68999999999999999999999999999999864433211100 00
Q ss_pred ----CCCCCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHHh
Q 014873 292 ----GPNSMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQM 354 (417)
Q Consensus 292 ----~~~~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~~ 354 (417)
.+......+.+.|.+... ..|..+++|+++++++++..++..+..+..+..++...
T Consensus 80 ~~~~~~~~~~~~~~~~f~~~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~ 139 (156)
T 1k2e_A 80 EVVKYPEETHIHFDLIYLVKRV-------GGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYRL 139 (156)
T ss_dssp EEEECSSCEEEEEEEEEEEEEE-------EECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHHH
T ss_pred eeecCCCCceEEEEEEEEEEec-------CCcEeeeEEeCHHHHhcCCCChHHHHHHHHHHHHHHhh
Confidence 011001123334444322 35688999999999998666666777777776666554
No 53
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.66 E-value=6.3e-16 Score=135.41 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=81.1
Q ss_pred CCcCcEEEEEEEecCCCE--EEEEEecCC-CCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC
Q 014873 218 PRVDPVVIMLVIDRENDR--VLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN 294 (417)
Q Consensus 218 pr~~pvVivlvi~~~~~k--VLL~rr~~~-~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~ 294 (417)
+.+..++.++|.+.++++ |||++|... .+| |.+|||++|+|||+++||+||++||||+.+....+++...+.....
T Consensus 5 ~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~ 83 (155)
T 2b06_A 5 QLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG 83 (155)
T ss_dssp GCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS
T ss_pred cCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCCC
Confidence 344556666666632222 889888752 355 9999999999999999999999999999998777777665554211
Q ss_pred CCCcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhhhhhHH
Q 014873 295 SMPCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALTFAEYI 341 (417)
Q Consensus 295 ~~p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~~~~~~ 341 (417)
....++.|.+......+ ...|..+++|++++++.++......+
T Consensus 84 --~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~ 126 (155)
T 2b06_A 84 --GRYIVICYKATEFSGTL--QSSEEGEVSWVQKDQIPNLNLAYDML 126 (155)
T ss_dssp --CEEEEEEEEECEEEECC--CCBTTBEEEEEEGGGGGGSCBCTTHH
T ss_pred --ceEEEEEEEEEecCCCC--CCCcceeeEEeeHHHhhhCCCChhHH
Confidence 23455666665443332 34688999999999999854433333
No 54
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.66 E-value=3.1e-16 Score=143.43 Aligned_cols=108 Identities=28% Similarity=0.405 Sum_probs=78.1
Q ss_pred EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC--CcEE
Q 014873 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM--PCQL 300 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~--p~~l 300 (417)
++++++.+ +++|||+||.. .|.|.+|||+||+|||+++||+||++||||+.+....+++...+.+..... ....
T Consensus 6 v~~~vi~~--~~~vLL~~r~~--~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T 3fk9_A 6 VTNCIVVD--HDQVLLLQKPR--RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWM 81 (188)
T ss_dssp EEEEEEEE--TTEEEEEECTT--TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEeCC--CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEE
Confidence 44445544 58999999863 789999999999999999999999999999999877776666554321111 1125
Q ss_pred EEEEEEEEecccccCCcccccceEEEehhhHHHHh
Q 014873 301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKKAL 335 (417)
Q Consensus 301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L 335 (417)
++.|.+....+.... ..|..+++|+++++++++.
T Consensus 82 ~~~f~a~~~~~~~~~-~~e~~~~~W~~~~el~~~~ 115 (188)
T 3fk9_A 82 LFTFKATEHEGEMLK-QSPEGKLEWKKKDEVLELP 115 (188)
T ss_dssp EEEEEESCEESCCCS-EETTEEEEEEEGGGGGGSC
T ss_pred EEEEEEECCCCCCcC-CCCCEeEEEEEHHHhhhCC
Confidence 566666544444332 3455789999999999753
No 55
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.66 E-value=9.3e-16 Score=142.24 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=80.4
Q ss_pred cEEEEEEEecCCCEEEEEEecCC--CCCcEEeeeeecc-CCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCc
Q 014873 222 PVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIE-PGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~~--~~g~WslPgG~VE-~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~ 298 (417)
.+|.+++++ .+++|||+||.+. ..+.|.+|||+|| +|||+++||+||++||||+++..+.+++.. +... . ...
T Consensus 44 ~av~v~i~~-~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~-~~~~-~-~~~ 119 (207)
T 1mk1_A 44 GAVAIVAMD-DNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL-DTAP-G-FSD 119 (207)
T ss_dssp CEEEEEECC-TTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE-CSCT-T-TBC
T ss_pred CEEEEEEEc-CCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEE-EcCC-C-ccc
Confidence 355555555 4789999998764 3579999999999 999999999999999999999888877765 3321 1 122
Q ss_pred EEEEEEEEEEeccccc---CCcccccceEEEehhhHHHHhhhhhHH
Q 014873 299 QLMVGFYAYAKSFEIN---VDKEELEDARWHSREDVKKALTFAEYI 341 (417)
Q Consensus 299 ~l~i~f~a~~~~~~~~---~~~~E~~~a~Wf~~del~~~L~~~~~~ 341 (417)
..+..|++........ .+++|+.+++|++++++.+++..+.+.
T Consensus 120 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~i~ 165 (207)
T 1mk1_A 120 ESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIV 165 (207)
T ss_dssp CCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTTSCC
T ss_pred cEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcCCcC
Confidence 2445566654332221 456789999999999999988776644
No 56
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.65 E-value=4.4e-15 Score=132.67 Aligned_cols=111 Identities=28% Similarity=0.324 Sum_probs=80.8
Q ss_pred CcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec----CCCCC--
Q 014873 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW----PVGPN-- 294 (417)
Q Consensus 221 ~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~----~~~~~-- 294 (417)
.++|.+++++. +++|||++|.+ .|.|.+|||++|+|||+++||+||++||||+.+..+.+++.... .+...
T Consensus 8 ~~~v~~~i~~~-~~~vLl~~r~~--~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
T 2kdv_A 8 RPNVGIVICNR-QGQVMWARRFG--QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLV 84 (164)
T ss_dssp EEEEEEEEECT-TSEEEEEEETT--CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTC
T ss_pred CcEEEEEEEcc-CCEEEEEEEcC--CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCccee
Confidence 45566666654 68999999875 68999999999999999999999999999999988888777531 11110
Q ss_pred ------CCCcEEEEEEEEEEecc--cccCC---cccccceEEEehhhHHHH
Q 014873 295 ------SMPCQLMVGFYAYAKSF--EINVD---KEELEDARWHSREDVKKA 334 (417)
Q Consensus 295 ------~~p~~l~i~f~a~~~~~--~~~~~---~~E~~~a~Wf~~del~~~ 334 (417)
.........|.+..... .+.++ ..|+.+++|++++++.+.
T Consensus 85 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~ 135 (164)
T 2kdv_A 85 RWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ 135 (164)
T ss_dssp CTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred eeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhh
Confidence 11123456666665433 34443 358999999999998764
No 57
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.65 E-value=1.1e-15 Score=137.00 Aligned_cols=101 Identities=22% Similarity=0.233 Sum_probs=73.6
Q ss_pred EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEE
Q 014873 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i 302 (417)
+++++++.. +++|||++|. .|.|++|||+||+|||+++||+||++||||+++..+.+++.+.++ ...+.
T Consensus 17 ~~~~~ii~~-~~~vLL~~r~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~-------~~~~~ 85 (163)
T 3f13_A 17 RRATAIIEM-PDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP-------FNAHK 85 (163)
T ss_dssp EEEEEECEE-TTEEEEEECC------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECS-------SEEEE
T ss_pred EEEEEEEEe-CCEEEEEEEC---CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecC-------CeEEE
Confidence 334444443 6899999986 589999999999999999999999999999999888888776554 25666
Q ss_pred EEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873 303 GFYAYAKSFEINVDKEELEDARWHSREDVKKALT 336 (417)
Q Consensus 303 ~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~ 336 (417)
.|++.. .+++..+ +|+.+++||+.+.....+.
T Consensus 86 ~f~~~~-~~~~~~~-~E~~~~~W~~~~~~~~~l~ 117 (163)
T 3f13_A 86 VYLCIA-QGQPKPQ-NEIERIALVSSPDTDMDLF 117 (163)
T ss_dssp EEEEEC--CCCCCC-TTCCEEEEESSTTCSSCBC
T ss_pred EEEEEE-CCcCccC-CCceEEEEECcccccCCCC
Confidence 677754 3444444 4899999999554443344
No 58
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.65 E-value=3.9e-16 Score=142.57 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=82.9
Q ss_pred CcEEEEEEEecCCC--EEEEEEecC---CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873 221 DPVVIMLVIDREND--RVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295 (417)
Q Consensus 221 ~pvVivlvi~~~~~--kVLL~rr~~---~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~ 295 (417)
..++++++++. ++ +|||+||.. ..+|.|++|||++|+|||+++||+||++||||+++..+.+++...+.+..
T Consensus 34 ~~~~~~v~i~~-~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~-- 110 (194)
T 1nqz_A 34 RRAAVLVALTR-EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTP-- 110 (194)
T ss_dssp EEEEEEEEEES-SSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEET--
T ss_pred ceEEEEEEEec-CCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCC--
Confidence 34444445554 45 899999874 46789999999999999999999999999999999888888776544332
Q ss_pred CCcEEEEEEEEEEec-cc-ccCCcccccceEEEehhhH-HHHhh
Q 014873 296 MPCQLMVGFYAYAKS-FE-INVDKEELEDARWHSREDV-KKALT 336 (417)
Q Consensus 296 ~p~~l~i~f~a~~~~-~~-~~~~~~E~~~a~Wf~~del-~~~L~ 336 (417)
....+..|.+.... .+ ...+++|+.+++|++++++ .+.+.
T Consensus 111 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 153 (194)
T 1nqz_A 111 -VGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLV 153 (194)
T ss_dssp -TTEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCCE
T ss_pred -CCeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCCCc
Confidence 23455566666552 23 4566789999999999999 77544
No 59
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.64 E-value=1.3e-15 Score=141.73 Aligned_cols=114 Identities=21% Similarity=0.171 Sum_probs=80.6
Q ss_pred cCcEEEEEEEecC--CCEEEEEEecCCC--CCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 014873 220 VDPVVIMLVIDRE--NDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295 (417)
Q Consensus 220 ~~pvVivlvi~~~--~~kVLL~rr~~~~--~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~ 295 (417)
.+.|+++.++..+ +++|||++|.+.+ ++.|++|||+||+||++++||+||++||||+.+..+.+++......+
T Consensus 61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--- 137 (212)
T 2dsc_A 61 ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPG--- 137 (212)
T ss_dssp CSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTT---
T ss_pred CCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCC---
Confidence 4555555555432 3589999986643 45899999999999999999999999999999876665543321111
Q ss_pred CCcEEEEEEEEEEecc-------cccCCcccccceEEEehhhHHHHhh
Q 014873 296 MPCQLMVGFYAYAKSF-------EINVDKEELEDARWHSREDVKKALT 336 (417)
Q Consensus 296 ~p~~l~i~f~a~~~~~-------~~~~~~~E~~~a~Wf~~del~~~L~ 336 (417)
+....+..|++.+... ....+++|..+++|++++++.+++.
T Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 185 (212)
T 2dsc_A 138 LSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLD 185 (212)
T ss_dssp TBCCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred ccCceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence 2223455566654321 3345678999999999999999765
No 60
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.64 E-value=5.3e-16 Score=135.93 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=74.7
Q ss_pred EEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-cEEE
Q 014873 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQLM 301 (417)
Q Consensus 223 vVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p-~~l~ 301 (417)
.+.++|++ +++|||+|| .|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+...... ..+.
T Consensus 21 ~~~~ii~~--~~~vLl~~r----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (154)
T 2pqv_A 21 RATALIVQ--NHKLLVTKD----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIE 94 (154)
T ss_dssp EEEECCEE--TTEEEEEEE----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEec----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEEE
Confidence 34444444 689999998 5899999999999999999999999999999987666555443322111111 2244
Q ss_pred EEEEEEEeccccc--CCcccccceEEEehhhHHHH
Q 014873 302 VGFYAYAKSFEIN--VDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 302 i~f~a~~~~~~~~--~~~~E~~~a~Wf~~del~~~ 334 (417)
+.|.+........ .+++|..+++|++++++.++
T Consensus 95 ~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 129 (154)
T 2pqv_A 95 FHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI 129 (154)
T ss_dssp EEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGS
T ss_pred EEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhc
Confidence 4555655433221 23467889999999999984
No 61
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.63 E-value=2.8e-15 Score=150.62 Aligned_cols=121 Identities=21% Similarity=0.262 Sum_probs=89.8
Q ss_pred cCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC----------CcEE
Q 014873 231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM----------PCQL 300 (417)
Q Consensus 231 ~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~----------p~~l 300 (417)
.++.+|||++|.+ .|.|++|||+||+|||+++||+||++||||+++....+++...+.+..... ....
T Consensus 35 ~~~~~vLLv~r~~--~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (364)
T 3fjy_A 35 LDSIEVCIVHRPK--YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKH 112 (364)
T ss_dssp HTTEEEEEEEETT--TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------C
T ss_pred CCceEEEEEEcCC--CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceE
Confidence 4466999999864 589999999999999999999999999999999877777766655432110 1244
Q ss_pred EEEEEEEEeccc------------ccCCcccccceEEEehhhHHHHhhhhhHHHHHHHHHHHHHH
Q 014873 301 MVGFYAYAKSFE------------INVDKEELEDARWHSREDVKKALTFAEYIKAQRTAAAKVEQ 353 (417)
Q Consensus 301 ~i~f~a~~~~~~------------~~~~~~E~~~a~Wf~~del~~~L~~~~~~~a~~~a~~~l~~ 353 (417)
+..|.+...... ...+++|+.+++||+++++.+++.++..+.++..+..+++.
T Consensus 113 ~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~~~~l~~ 177 (364)
T 3fjy_A 113 TLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFVDRVQE 177 (364)
T ss_dssp EEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHHHHHhcc
Confidence 455555554432 13456899999999999999999999888888888777754
No 62
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=4e-16 Score=135.34 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=73.6
Q ss_pred cEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEe-ecCCCCCCCCcEE
Q 014873 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ-PWPVGPNSMPCQL 300 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~-~~~~~~~~~p~~l 300 (417)
+++.++|++.++++|||+||.. .|.|.+|||++|+|||+++||+||++||||+.+..+..+... .... ....
T Consensus 5 ~~~~~~i~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~-----~~~~ 77 (146)
T 2jvb_A 5 PVRGAAIFNENLSKILLVQGTE--SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNI-----QGKN 77 (146)
T ss_dssp CCEEEEEBCTTSSEEEEECCSS--SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEE-----TTEE
T ss_pred EEEEEEEEeCCCCEEEEEEEcC--CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhccccccccccc-----CCce
Confidence 4455566665448999999764 689999999999999999999999999999988643211110 0000 1122
Q ss_pred EEEEEEEEec--ccccC-CcccccceEEEehhhHHHHhhh
Q 014873 301 MVGFYAYAKS--FEINV-DKEELEDARWHSREDVKKALTF 337 (417)
Q Consensus 301 ~i~f~a~~~~--~~~~~-~~~E~~~a~Wf~~del~~~L~~ 337 (417)
+..|++.... ..... +.+|+.+++|++++++.+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 117 (146)
T 2jvb_A 78 YKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYK 117 (146)
T ss_dssp EEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGC
T ss_pred EEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcc
Confidence 3334333221 12222 3678999999999999986654
No 63
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.60 E-value=2.6e-16 Score=132.94 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=74.3
Q ss_pred EEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEEE
Q 014873 228 VIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFY 305 (417)
Q Consensus 228 vi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f~ 305 (417)
+++. +++|||+||.+ ..+|.|++|||++|+|||+++||+||++||||+.+..+.+++...+.+.. ....+..|.
T Consensus 11 i~~~-~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 86 (129)
T 1mut_A 11 IRNE-NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPD---RHITLWFWL 86 (129)
T ss_dssp CEET-TTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSS---CEEECCCEE
T ss_pred EEec-CCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCC---ceEEEEEEE
Confidence 3443 68999999875 35699999999999999999999999999999998766555554443321 122334455
Q ss_pred EEEecccccCCcccccceEEEehhhHHHH
Q 014873 306 AYAKSFEINVDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 306 a~~~~~~~~~~~~E~~~a~Wf~~del~~~ 334 (417)
+...... +..+|..+++|++++++.++
T Consensus 87 ~~~~~~~--~~~~e~~~~~W~~~~el~~~ 113 (129)
T 1mut_A 87 VERWEGE--PWGKEGQPGEWMSLVGLNAD 113 (129)
T ss_dssp EEECSSC--CCCCSSCCCEEEESSSCCTT
T ss_pred EEccCCc--cCCcccceeEEeCHHHcccc
Confidence 5544332 34568889999999999874
No 64
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.60 E-value=3.5e-15 Score=139.59 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=73.1
Q ss_pred CCEEEEEEecCC-----CCCcEEe-eeeeccCCCC------HHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEE
Q 014873 233 NDRVLLSRQSRF-----VPRMWSC-IAGFIEPGES------LEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (417)
Q Consensus 233 ~~kVLL~rr~~~-----~~g~Wsl-PgG~VE~GEt------leeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l 300 (417)
+++|||++|... ..|.|++ |||+||+||| +++||+||++||||+++..+.+++...|...+.. ...+
T Consensus 78 ~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~~~-~~~l 156 (211)
T 3e57_A 78 GDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTEVS-RVHL 156 (211)
T ss_dssp TTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSHHH-HTEE
T ss_pred CCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCCCC-eEEE
Confidence 689999999753 2378998 9999999998 5999999999999999998899988877432111 1245
Q ss_pred EEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873 301 MVGFYAYAKSFEINVDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 301 ~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~ 334 (417)
++.|.+..... .+.+.|..+++|+++++|+++
T Consensus 157 ~~~f~~~~~~g--~~~~~E~~~~~W~~~~eL~~~ 188 (211)
T 3e57_A 157 GALFLGRGKFF--SVKEKDLFEWELIKLEELEKF 188 (211)
T ss_dssp EEEEEEEEEEE--EESCTTTCEEEEEEHHHHHHH
T ss_pred EEEEEEEeCCc--eeCCCCeEEEEEEEHHHHHHh
Confidence 55677665533 345577889999999999986
No 65
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.56 E-value=1.8e-15 Score=146.61 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=75.1
Q ss_pred cCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 014873 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM 296 (417)
Q Consensus 217 ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~ 296 (417)
|...-+++.+++++..+++|||+||.+ .+|.|.+|||+||+|||+++||+||++||||+++..+..+..+..+. .
T Consensus 97 ~~~~v~~v~avv~~~~~~~vLLv~r~~-~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~~~----~ 171 (271)
T 2a6t_A 97 YKTRIPVRGAIMLDMSMQQCVLVKGWK-ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMT----I 171 (271)
T ss_dssp HSCCCCEEEEEEBCSSSSEEEEEEESS-TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEE----E
T ss_pred cCCCCCeEEEEEEECCCCEEEEEEEeC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeeccCC----c
Confidence 443445666667665458999999976 35899999999999999999999999999999987533211111000 1
Q ss_pred CcEEEEEEEEEEecc--cccC-CcccccceEEEehhhHHHH
Q 014873 297 PCQLMVGFYAYAKSF--EINV-DKEELEDARWHSREDVKKA 334 (417)
Q Consensus 297 p~~l~i~f~a~~~~~--~~~~-~~~E~~~a~Wf~~del~~~ 334 (417)
....+..|++..... .... +++|+.+++|++++++.++
T Consensus 172 ~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 212 (271)
T 2a6t_A 172 RGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF 212 (271)
T ss_dssp TTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred CCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHH
Confidence 123445555544322 2222 4679999999999999874
No 66
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.55 E-value=3.2e-14 Score=124.96 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=75.0
Q ss_pred EEEEEEecC--CCEEEEEEecC--CCCCcEEeeeeeccCCCCHH-HHHHHHHHHHhC-CeeccEEEEEEeecCCCCCCCC
Q 014873 224 VIMLVIDRE--NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLE-EAVRRETWEETG-IEVGEVVYHTSQPWPVGPNSMP 297 (417)
Q Consensus 224 Vivlvi~~~--~~kVLL~rr~~--~~~g~WslPgG~VE~GEtle-eAa~REv~EEtG-l~v~~v~~~~s~~~~~~~~~~p 297 (417)
++++|.+.. +++|||+||.. ...|+|++|||.+|+||+++ +|++||++|||| +.+..+.+++...+.+.. .
T Consensus 22 ~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~---~ 98 (155)
T 1x51_A 22 ATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH---I 98 (155)
T ss_dssp EEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS---C
T ss_pred EEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCC---c
Confidence 334444432 47999999874 45689999999999999997 999999999999 887766665554443321 1
Q ss_pred cEEEEEEEEEEecccccCCcccccceEEEehhhHHHH
Q 014873 298 CQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 298 ~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~ 334 (417)
...+..|.+....+.. ...|..+++|++++++.++
T Consensus 99 ~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~ 133 (155)
T 1x51_A 99 KLTYQVYGLALEGQTP--VTTVPPGARWLTQEEFHTA 133 (155)
T ss_dssp EEEEEEEEEECSSCCC--CCCCCTTEEEEEHHHHHHS
T ss_pred cEEEEEEEEEEcCCCC--CCCCCCccEEccHHHhhhc
Confidence 2334455555443332 3357788999999999973
No 67
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.50 E-value=1e-13 Score=131.62 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=81.4
Q ss_pred cEEEEEEEecCCCEEEEEEecC---CCCCcEEee-eeeccCC------CC---HHHHHHHHHHHHhCCeec-----cEEE
Q 014873 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPG------ES---LEEAVRRETWEETGIEVG-----EVVY 283 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslP-gG~VE~G------Et---leeAa~REv~EEtGl~v~-----~v~~ 283 (417)
.++.+++++. +++|||+||.. .++|+|++| ||++++| |+ +++||+||++|||||.+. .+.+
T Consensus 60 ~av~v~v~~~-~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~ 138 (235)
T 2dho_A 60 RAFSVFLFNT-ENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINY 138 (235)
T ss_dssp EEEEEEEECT-TCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEE
T ss_pred EEEEEEEEcC-CCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEE
Confidence 3555566654 67999999974 467999998 5999999 88 599999999999999865 3566
Q ss_pred EEEeecCCCCCCC--CcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873 284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT 336 (417)
Q Consensus 284 ~~s~~~~~~~~~~--p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~ 336 (417)
++...+....... ...+...|++.. ..++.++++|+.+++|++++++.+++.
T Consensus 139 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~~~el~~~l~ 192 (235)
T 2dho_A 139 LTRIHYKAQSDGIWGEHEIDYILLVRM-NVTLNPDPNEIKSYCYVSKEELKELLK 192 (235)
T ss_dssp EEEEEEEEECSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEECHHHHHHHHH
T ss_pred EEEEEEeccCCCccceeEEEEEEEEEE-CCCCcCChHHEEEEEEEcHHHHHHHHh
Confidence 6665443211110 122444555554 345667789999999999999998765
No 68
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=132.19 Aligned_cols=113 Identities=15% Similarity=0.224 Sum_probs=81.5
Q ss_pred cEEEEEEEecCCCEEEEEEecC---CCCCcEEeee-eeccCC------CCH---HHHHHHHHHHHhCCeec-----cEEE
Q 014873 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIA-GFIEPG------ESL---EEAVRRETWEETGIEVG-----EVVY 283 (417)
Q Consensus 222 pvVivlvi~~~~~kVLL~rr~~---~~~g~WslPg-G~VE~G------Etl---eeAa~REv~EEtGl~v~-----~v~~ 283 (417)
.++.+++++. +++|||+||.. .++|+|++|+ |++++| |++ ++||+||++|||||.+. .+.+
T Consensus 71 ~av~v~v~~~-~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~ 149 (246)
T 2pny_A 71 RAFSVVLFNT-KNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVF 149 (246)
T ss_dssp EEEEEEEECT-TCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEE
T ss_pred EEEEEEEEeC-CCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEE
Confidence 3555566664 67999999973 4689999985 999999 886 99999999999999864 3566
Q ss_pred EEEeecCCCCCCC--CcEEEEEEEEEEecccccCCcccccceEEEehhhHHHHhh
Q 014873 284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEDARWHSREDVKKALT 336 (417)
Q Consensus 284 ~~s~~~~~~~~~~--p~~l~i~f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~L~ 336 (417)
++...+....... ...+...|++.. ..++.++++|+.+++|++++++.+++.
T Consensus 150 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~~eel~~~l~ 203 (246)
T 2pny_A 150 MTIYHHKAKSDRIWGEHEICYLLLVRK-NVTLNPDPSETKSILYLSQEELWELLE 203 (246)
T ss_dssp EEEEEEEEESSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEECHHHHHHHHH
T ss_pred EEEEEEEecCCCceeeeEEEEEEEEEE-CCCCCCChHHeeEEEEEeHHHHHHHHH
Confidence 6665443211110 122444555554 345667789999999999999998765
No 69
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.47 E-value=2.9e-14 Score=132.93 Aligned_cols=111 Identities=18% Similarity=0.117 Sum_probs=78.7
Q ss_pred CcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCCeeccEE-----EEEEe
Q 014873 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVV-----YHTSQ 287 (417)
Q Consensus 214 ~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl~v~~v~-----~~~s~ 287 (417)
...|.. ..++++++++. +++|||++|. .|.|++|||+||+|| |+++||+||++||||+.+..+. ++++.
T Consensus 38 ~~l~~~-~~~vv~~i~~~-~~~vLl~~r~---~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~ 112 (212)
T 1u20_A 38 ALLHAP-SQAKLFDRVPI-RRVLLMMMRF---DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQ 112 (212)
T ss_dssp EEEEEE-CCCEETTTEEC-CEEEEEEEET---TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEE
T ss_pred EEEeCC-CceEEEEEEec-CCEEEEEEeC---CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEec
Confidence 344432 34455555553 6799999883 689999999999999 9999999999999999987542 56665
Q ss_pred ecCCCCCCCCcEEEEEEEEEEeccccc----------CCcccccceEEEehhhHHH
Q 014873 288 PWPVGPNSMPCQLMVGFYAYAKSFEIN----------VDKEELEDARWHSREDVKK 333 (417)
Q Consensus 288 ~~~~~~~~~p~~l~i~f~a~~~~~~~~----------~~~~E~~~a~Wf~~del~~ 333 (417)
.+.+. ....+..|.+....+++. .++.|..++.|++++++.+
T Consensus 113 ~~~~~----~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~ 164 (212)
T 1u20_A 113 VREHP----QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD 164 (212)
T ss_dssp EECTT----SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred cccCC----CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhh
Confidence 55432 235566666665433221 2346788899999999865
No 70
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.42 E-value=8.1e-14 Score=130.81 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=76.1
Q ss_pred CCCcccCCcCcEEE-EEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCCeecc-----EEEE
Q 014873 212 CKKRIYPRVDPVVI-MLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGE-----VVYH 284 (417)
Q Consensus 212 C~~~~ypr~~pvVi-vlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl~v~~-----v~~~ 284 (417)
|+...|+ .++.++ +++.. ++++||..|. +|.|++|||+||+|| |+++||+||++||||+++.. +.++
T Consensus 45 ~~~~~~~-~~~~~v~~vi~~--~~~~ll~~r~---~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~ 118 (217)
T 2xsq_A 45 CHALLYA-PDPGMLFGRIPL--RYAILMQMRF---DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYR 118 (217)
T ss_dssp EEEEEEE-EEEEEETTTEEE--EEEEEEEEET---TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEE
T ss_pred eeeEEEc-CCCcEEEEEEEe--eCcEEEEEcc---CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEE
Confidence 4567776 455444 22322 2356666554 589999999999999 99999999999999998862 2344
Q ss_pred EEeecCCCCCCCCcEEEEEEEEEEecccc----------cCCcccccceEEEehhhHHH
Q 014873 285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEI----------NVDKEELEDARWHSREDVKK 333 (417)
Q Consensus 285 ~s~~~~~~~~~~p~~l~i~f~a~~~~~~~----------~~~~~E~~~a~Wf~~del~~ 333 (417)
.+.+.. .+..+++.|.+.....+. ..+..|..++.|++++++.+
T Consensus 119 ~~~~~~-----~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d 172 (217)
T 2xsq_A 119 SSHVGS-----GPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRD 172 (217)
T ss_dssp EEEECS-----SSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTT
T ss_pred eecCCC-----CCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhhh
Confidence 444432 235667777776554333 22356888999999998863
No 71
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.36 E-value=4.1e-12 Score=124.29 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=69.1
Q ss_pred EEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeec-----------cEE--------EEEEeecCCCCCC
Q 014873 235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-----------EVV--------YHTSQPWPVGPNS 295 (417)
Q Consensus 235 kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~-----------~v~--------~~~s~~~~~~~~~ 295 (417)
+|||++|.. .|.|.+|||+||+|||+++||+||++||||+.+. .+. ++.........+.
T Consensus 140 ~vLl~~r~~--~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~ 217 (292)
T 1q33_A 140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNT 217 (292)
T ss_dssp EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCC
T ss_pred EEEEEEecC--CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCC
Confidence 799999875 4899999999999999999999999999998730 111 1111111111010
Q ss_pred -CCcEEEEEEEEEEeccc-----ccCCcccccceEEEehhhHHHHhhhhhH
Q 014873 296 -MPCQLMVGFYAYAKSFE-----INVDKEELEDARWHSREDVKKALTFAEY 340 (417)
Q Consensus 296 -~p~~l~i~f~a~~~~~~-----~~~~~~E~~~a~Wf~~del~~~L~~~~~ 340 (417)
....+++.|++....++ .....+|+.+++||+++++++ |.++|.
T Consensus 218 d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~-L~~~h~ 267 (292)
T 1q33_A 218 DNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLK-LYASHS 267 (292)
T ss_dssp SSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCC-CSTTHH
T ss_pred cccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcc-cCHhHH
Confidence 11345666666553332 123457899999999999987 555554
No 72
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.35 E-value=1.7e-12 Score=130.89 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=72.2
Q ss_pred EEEecCCCEEEEEEecC--CCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCcEEEEEE
Q 014873 227 LVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF 304 (417)
Q Consensus 227 lvi~~~~~kVLL~rr~~--~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl~v~~v~~~~s~~~~~~~~~~p~~l~i~f 304 (417)
+|+.+.+++|||+||.. ..+|+|+||||++|+| |+++|+.||++||||+.+....+++...+.+.. ....+..|
T Consensus 245 ~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h---~~~~~~~~ 320 (369)
T 3fsp_A 245 AVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSH---LVWQLTVF 320 (369)
T ss_dssp EEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSS---EEEEEEEE
T ss_pred EEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcce---EEEEEEEE
Confidence 33443478999999974 4679999999999999 999999999999999998655544444333321 12344455
Q ss_pred EEEEecccccCCcccccceEEEehhhHHHH
Q 014873 305 YAYAKSFEINVDKEELEDARWHSREDVKKA 334 (417)
Q Consensus 305 ~a~~~~~~~~~~~~E~~~a~Wf~~del~~~ 334 (417)
.+....+ ..|..+++||+++++.+.
T Consensus 321 ~~~~~~~-----~~e~~~~~Wv~~~el~~~ 345 (369)
T 3fsp_A 321 PGRLVHG-----GPVEEPYRLAPEDELKAY 345 (369)
T ss_dssp EEEECCS-----SCCCTTEEEEEGGGGGGS
T ss_pred EEEEcCC-----CCCccccEEeeHHHhhhC
Confidence 5544332 468889999999999873
No 73
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.31 E-value=2.2e-11 Score=119.46 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=81.8
Q ss_pred cEEEEEEEecCC--CEEEEEEecC---CCCCcEE-eeeeeccCCCCHHHHHHHHHHHHhCCeec---cEEEEEEeecCCC
Q 014873 222 PVVIMLVIDREN--DRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVG---EVVYHTSQPWPVG 292 (417)
Q Consensus 222 pvVivlvi~~~~--~kVLL~rr~~---~~~g~Ws-lPgG~VE~GEtleeAa~REv~EEtGl~v~---~v~~~~s~~~~~~ 292 (417)
.+|-+.+++.++ .++||+||+. .++|+|+ ++||++++|||+++||+||++||+||.+. .+...+...|.+.
T Consensus 119 ~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~ 198 (300)
T 3dup_A 119 YGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCME 198 (300)
T ss_dssp EEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEe
Confidence 355566665432 2999999983 5789995 99999999999999999999999999863 2333333322211
Q ss_pred -CCCCCcEEEEEEEEEEec-ccccCCcccccceEEEehhhHHHHhhh-hhHH
Q 014873 293 -PNSMPCQLMVGFYAYAKS-FEINVDKEELEDARWHSREDVKKALTF-AEYI 341 (417)
Q Consensus 293 -~~~~p~~l~i~f~a~~~~-~~~~~~~~E~~~a~Wf~~del~~~L~~-~~~~ 341 (417)
+..+...++..|.+.+.. ..+.++++|+++++|++++|+.+++.. +.++
T Consensus 199 ~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~pg~F~ 250 (300)
T 3dup_A 199 SPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFK 250 (300)
T ss_dssp ETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBC
T ss_pred cCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHHHhcCCCcC
Confidence 111122334444444432 233567899999999999999998876 4443
No 74
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.27 E-value=1.5e-11 Score=116.48 Aligned_cols=100 Identities=22% Similarity=0.372 Sum_probs=69.6
Q ss_pred CEEEEEEecC---CCCCcEEeeeeeccCCCC--------------------HHHHHHHHHHHHhCCeeccE---------
Q 014873 234 DRVLLSRQSR---FVPRMWSCIAGFIEPGES--------------------LEEAVRRETWEETGIEVGEV--------- 281 (417)
Q Consensus 234 ~kVLL~rr~~---~~~g~WslPgG~VE~GEt--------------------leeAa~REv~EEtGl~v~~v--------- 281 (417)
.+|||+||.. +.+|.|.+|||+||+||+ +.+||+||++|||||.+..-
T Consensus 24 ~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~ 103 (232)
T 3qsj_A 24 IEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDT 103 (232)
T ss_dssp EEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCS
T ss_pred eEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccCh
Confidence 3999999985 347999999999999997 59999999999999975311
Q ss_pred ---------------------------------EEEEEeecCCCCCCCCcEEEEEEE-EEEeccc-ccCCcccccceEEE
Q 014873 282 ---------------------------------VYHTSQPWPVGPNSMPCQLMVGFY-AYAKSFE-INVDKEELEDARWH 326 (417)
Q Consensus 282 ---------------------------------~~~~s~~~~~~~~~~p~~l~i~f~-a~~~~~~-~~~~~~E~~~a~Wf 326 (417)
.++. .|. .+...+..+...|| +...... +..+.+|+.+++|+
T Consensus 104 ~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~a--rWi-TP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~ 180 (232)
T 3qsj_A 104 PLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIG--RFV-TPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWT 180 (232)
T ss_dssp CCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEE--EEE-CCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEE
T ss_pred hhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeE--EEc-CCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEE
Confidence 1111 121 22233454444444 4444222 25577999999999
Q ss_pred ehhhHHHHhh
Q 014873 327 SREDVKKALT 336 (417)
Q Consensus 327 ~~del~~~L~ 336 (417)
+++++.+...
T Consensus 181 ~p~eal~~~~ 190 (232)
T 3qsj_A 181 PARDMLTRIQ 190 (232)
T ss_dssp EHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999987543
No 75
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.01 E-value=1.1e-09 Score=108.47 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=68.4
Q ss_pred EEEEEecCCCEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHh-CCeeccEEEEEEeecCCCCCCCCcEEEEE
Q 014873 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET-GIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (417)
Q Consensus 225 ivlvi~~~~~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEt-Gl~v~~v~~~~s~~~~~~~~~~p~~l~i~ 303 (417)
+.+++.. +++|||+ . ..| |+||||.++.++ .++++||++||| |+++.....++.+..+. .....+.
T Consensus 186 vgaii~~-~g~vLL~--~--~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~-----~~~~~i~ 252 (321)
T 3rh7_A 186 LGAVLEQ-QGAVFLA--G--NET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKS-----DGRQNIV 252 (321)
T ss_dssp EEEEEES-SSCEEEB--C--SSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTT-----TCCEEEE
T ss_pred EEEEEEE-CCEEEEe--e--CCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCC-----CceEEEE
Confidence 3444443 6899999 2 357 999988665444 459999999997 99998666666654432 1234567
Q ss_pred EEEEEecccccCCcccccceEEEehhhHHHH-hhhhhHHHHH
Q 014873 304 FYAYAKSFEINVDKEELEDARWHSREDVKKA-LTFAEYIKAQ 344 (417)
Q Consensus 304 f~a~~~~~~~~~~~~E~~~a~Wf~~del~~~-L~~~~~~~a~ 344 (417)
|.+....++ ..+++||++++|+.. +.+...+..+
T Consensus 253 f~~~~~~g~-------~~e~~~f~~~elp~~~~~~~~~~~~L 287 (321)
T 3rh7_A 253 YHALASDGA-------PRQGRFLRPAELAAAKFSSSATADII 287 (321)
T ss_dssp EEEEECSSC-------CSSSEEECHHHHTTCEESSHHHHHHH
T ss_pred EEEEeCCCC-------eeeeEEECHHHCCCcccCCHHHHHHH
Confidence 777765433 378999999999973 4555554443
No 76
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.83 E-value=1e-09 Score=100.27 Aligned_cols=71 Identities=17% Similarity=0.060 Sum_probs=50.7
Q ss_pred CEEEEEEecCCCCCcEEeeeeeccCCC-CHHHHHHHHHHHHhCC-eeccEEEEEEeecCCCCCCCCcEEEEEEEEEEecc
Q 014873 234 DRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGI-EVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF 311 (417)
Q Consensus 234 ~kVLL~rr~~~~~g~WslPgG~VE~GE-tleeAa~REv~EEtGl-~v~~v~~~~s~~~~~~~~~~p~~l~i~f~a~~~~~ 311 (417)
..||++.|. .|.|.+|||+||+|| |+++|++||+.||+|+ .+....|+.+..+.+. ....+..|.+....+
T Consensus 44 ~~iLmQ~R~---~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp----~~V~LHfY~crl~~G 116 (214)
T 3kvh_A 44 FSVLMQMRF---DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP----HRVVAHLYARQLTLE 116 (214)
T ss_dssp EEEEEEEET---TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC--------CEEEEEEEEECCHH
T ss_pred heEEEeeee---CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC----CEEEEEEEEEEeeCC
Confidence 457777765 599999999999999 9999999999999997 5776677777766532 134555565655433
No 77
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.54 E-value=1.6e-07 Score=86.70 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=36.8
Q ss_pred CEEEEEEecCCCCCcEEeeeeeccCCCCHHHHHHHHHHHHhCC
Q 014873 234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276 (417)
Q Consensus 234 ~kVLL~rr~~~~~g~WslPgG~VE~GEtleeAa~REv~EEtGl 276 (417)
.+|||+|+. .+.|.||||.+|+||+.++|++||+.||+|+
T Consensus 73 phVLLlq~~---~~~f~LPGGkle~gE~~~eaL~REL~EELg~ 112 (208)
T 3bho_A 73 PHVLLLQLG---TTFFKLPGGELNPGEDEVEGLKRLMTEILGR 112 (208)
T ss_dssp EEEEEEEEE---TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred cEEEEEEcC---CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence 489999975 4699999999999999999999999999995
No 78
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.05 E-value=0.00024 Score=50.96 Aligned_cols=33 Identities=21% Similarity=0.590 Sum_probs=28.6
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (417)
+.++|||.||+.+.......+..|+ .||+++|.
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~--kCG~t~~~ 49 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACG--KCGYTEWK 49 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECS--SSCCEEEC
T ss_pred EecccCCCCCCceEEecCCCeEECC--CCCCEEEC
Confidence 4579999999998887778899997 69999985
No 79
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.81 E-value=0.027 Score=40.97 Aligned_cols=33 Identities=24% Similarity=0.573 Sum_probs=26.2
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (417)
+..+|||.||.-+.......+..|. .|+.+.|-
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~--kCgyt~~~ 48 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCG--RCGYTEFK 48 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECT--TTCCCEEC
T ss_pred EccccCcCCCCceeEeccCCEEECC--CCCCEEEe
Confidence 3479999999988766666799997 69988764
No 80
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.80 E-value=0.31 Score=40.42 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.7
Q ss_pred ccCccccCCCcceeccC----ccceeecCCCCCCcccC
Q 014873 185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRIYP 218 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~yp 218 (417)
..+|||.||..|.+..+ ..+..|. .|+.+++.
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~--~C~y~~~~ 38 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACR--NCDYSEIA 38 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECS--SSCCEECC
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECC--CCCCeEEc
Confidence 46899999999988654 3488997 69998864
No 81
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=84.41 E-value=0.42 Score=44.66 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=25.7
Q ss_pred HHHH-HhhhhccCccccCCCc-ceeccCc---cceeecCCCCCCc
Q 014873 176 ARAL-LEWHNVSRFCGHCGEK-TIPKEAG---KLKQCSNASCKKR 215 (417)
Q Consensus 176 A~~l-~~W~~~~~fC~~CG~~-~~~~~~g---~~~~C~~~~C~~~ 215 (417)
||=| -.|-.++.|||.||.. +...... -...|+ .|+..
T Consensus 23 aRVLTE~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~--~C~Ee 65 (257)
T 4esj_A 23 ARILTEDWVYRQSYCPNCGNNPLNHFENNRPVADFYCN--HCSEE 65 (257)
T ss_dssp HHHHHHHHHHHHCCCTTTCCSSCEEC----CCCEEECT--TTCCE
T ss_pred ehhhhHHHHHHCCcCCCCCChhhhhccCCCcccccccC--Ccchh
Confidence 5555 3699999999999995 5554443 457787 58754
No 82
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=79.65 E-value=0.95 Score=38.66 Aligned_cols=40 Identities=23% Similarity=0.526 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhccCccccCCCcceeccC----ccceeecCCCCCCcc
Q 014873 171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRI 216 (417)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~ 216 (417)
+++.+...+.. .+|||.||.-|.+..+ ..+..|. .|+.+.
T Consensus 13 ~~~~~~~~~~~----~~FCPeCgNmL~pked~~~~~l~~~Cr--tCgY~~ 56 (133)
T 3qt1_I 13 GLVPRGSHMTT----FRFCRDCNNMLYPREDKENNRLLFECR--TCSYVE 56 (133)
T ss_dssp ---------CC----CCBCTTTCCBCBCCBCTTTCCBCCBCS--SSCCBC
T ss_pred ccccCCccccC----CeeCCCCCCEeeECccCCCceeEEECC--CCCCcE
Confidence 45555555544 6999999999987654 3478897 699866
No 83
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=79.21 E-value=0.72 Score=34.84 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=29.0
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEE
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVI 225 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVi 225 (417)
-..--||.|++++.....+...+|+ .|+ ..||-.+..-+
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPv 44 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICK--GDR-LAFPIKDGIPM 44 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEET--TTT-EEEEEETTEEC
T ss_pred hhheECCCCCCcCeEeCCCCEEEcC--CCC-cEecCCCCeee
Confidence 3445799999999887777788997 586 66776665443
No 84
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=78.78 E-value=1.7 Score=30.26 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=22.8
Q ss_pred cCccccCCC-cceeccCccceeecCCCCCCccc
Q 014873 186 SRFCGHCGE-KTIPKEAGKLKQCSNASCKKRIY 217 (417)
Q Consensus 186 ~~fC~~CG~-~~~~~~~g~~~~C~~~~C~~~~y 217 (417)
...||.||+ ++.........+|. .||..+-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~--~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA--KCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES--SSCCBCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc--ccCCccc
Confidence 457999999 77666565668997 6998754
No 85
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=78.73 E-value=0.74 Score=34.97 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.6
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEEE
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIM 226 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvViv 226 (417)
-..--||.|++++.....+...+|+ .|+ ..||-.+..-++
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPvm 45 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQAELVCN--ADR-LAFPVRDGVPIM 45 (70)
T ss_dssp CCCCBCTTTCCBEEEETTTTEEEET--TTT-EEEEEETTEECC
T ss_pred hhheECCCCCCcCEEeCCCCEEEcC--CCC-ceecCCCCeeee
Confidence 3456799999999887777788997 586 667866655433
No 86
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=78.67 E-value=0.77 Score=34.68 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=29.1
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEE
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVI 225 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVi 225 (417)
-..--||.|++++.........+|+ .|+ ..||-.+..-+
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPv 44 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSR--QAK-LAYPIKDGIPY 44 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEET--TTT-EEEEEETTEEC
T ss_pred hhheECCCCCCcCeEeCCCCEEEcC--CCC-cEecCCCCeee
Confidence 3456799999999887777788997 586 66776665443
No 87
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=77.02 E-value=0.91 Score=34.18 Aligned_cols=42 Identities=12% Similarity=-0.078 Sum_probs=31.3
Q ss_pred hhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEE
Q 014873 181 EWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVI 225 (417)
Q Consensus 181 ~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVi 225 (417)
.|.-..--||.|++++.....+...+|+ .|+ ..||-.+..-+
T Consensus 5 ~~LLeiL~CP~ck~~L~~~~~~g~LvC~--~c~-~~YPI~dGIPv 46 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYLESEQLLVNE--RLN-LAYRIDDGIPV 46 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEETTTTEEEET--TTT-EEEEEETTEEC
T ss_pred HHHHHHhCCCCCCCcCeEeCCCCEEEcC--CCC-ccccCCCCEee
Confidence 4455567899999999887777788997 586 67786665443
No 88
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=73.52 E-value=1.7 Score=32.84 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=30.6
Q ss_pred hhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEEE
Q 014873 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIM 226 (417)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvViv 226 (417)
|.-..--||.|++++.....+...+|+ .|+ ..||-.+..-++
T Consensus 4 ~LLeiL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPvm 45 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSADKTELISK--GAG-LAYPIRDGIPVM 45 (69)
T ss_dssp CGGGTCCCTTTCCCCEECTTSSEEEET--TTT-EEEEEETTEECC
T ss_pred HHHhheeCCCCCCcCeEeCCCCEEEcC--CCC-cEecCcCCeeee
Confidence 344456799999999887777788997 586 667766655433
No 89
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=73.22 E-value=1.8 Score=36.22 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=24.3
Q ss_pred ccCccccCCCcceecc----CccceeecCCCCCCccc
Q 014873 185 VSRFCGHCGEKTIPKE----AGKLKQCSNASCKKRIY 217 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~----~g~~~~C~~~~C~~~~y 217 (417)
..+|||.||.-|.+.. ...+..|. .|+...-
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~--~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECR--TCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECS--SSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECC--cCCCeee
Confidence 4689999999998764 34678897 6998764
No 90
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=70.08 E-value=2.7 Score=30.33 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=28.2
Q ss_pred hhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEE
Q 014873 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVV 224 (417)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvV 224 (417)
|.-..--||.|.+++.... ...+|+++.|+ ..||-.+..-
T Consensus 6 ~lL~iL~CP~c~~~L~~~~--~~L~C~~~~c~-~~YPI~dGIP 45 (56)
T 2kpi_A 6 GLLEILACPACHAPLEERD--AELICTGQDCG-LAYPVRDGIP 45 (56)
T ss_dssp SCTTSCCCSSSCSCEEEET--TEEEECSSSCC-CEEEEETTEE
T ss_pred HHHhheeCCCCCCcceecC--CEEEcCCcCCC-cEEeeECCEe
Confidence 4445568999999997765 56789855686 6677655543
No 91
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=68.33 E-value=2.1 Score=33.59 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=23.0
Q ss_pred ccCccccCCCcceeccCccceeecCCCCCCc
Q 014873 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
....||.||+.+....+--...|+ .|+..
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~--~Cg~~ 54 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCS--YCDYK 54 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEET--TTCCE
T ss_pred ccCcCCCCCCcceeccCCCeEECC--CCCCE
Confidence 356899999988776666678897 69986
No 92
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=66.00 E-value=0.91 Score=41.75 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEe
Q 014873 172 IAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSC 251 (417)
Q Consensus 172 ~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~Wsl 251 (417)
+..-|.+|.+=..+.++|..||.-+. ......|.+ |+-+.-++++|-+. .-|+-..+.+.+.|.|-.
T Consensus 54 ~~~La~al~~~~~~i~~C~~C~nlte---~~~C~IC~d--------~~Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~YhV 120 (212)
T 3vdp_A 54 VRSLSQAIIEAKEKLRYCKICFNITD---KEVCDICSD--------ENRDHSTICVVSHP--MDVVAMEKVKEYKGVYHV 120 (212)
T ss_dssp HHHHHHHHHHHHHHCEECTTTCCEES---SSSCHHHHC--------TTSEEEEEEEESSH--HHHHHHHTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCCC---CCcCCCCCC--------CCCCCCEEEEECCH--HHHHHHHhhCccceEEEe
Confidence 34457888888999999999998763 333444543 34466666666543 346666777778999999
Q ss_pred eeeeccC--CCCHHHHHHHHHHHHh
Q 014873 252 IAGFIEP--GESLEEAVRRETWEET 274 (417)
Q Consensus 252 PgG~VE~--GEtleeAa~REv~EEt 274 (417)
.+|.+.| |-.+++--..++.+-+
T Consensus 121 LgG~iSPldGigP~~L~i~~L~~Ri 145 (212)
T 3vdp_A 121 LHGVISPIEGVGPEDIRIKELLERV 145 (212)
T ss_dssp CSSCCBTTTTBCGGGTTHHHHHHHH
T ss_pred cCCccCccCCCCccccCHHHHHHHH
Confidence 9999986 3345555555555543
No 93
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=65.97 E-value=1.9 Score=33.44 Aligned_cols=13 Identities=62% Similarity=1.428 Sum_probs=10.7
Q ss_pred cCccccCCCccee
Q 014873 186 SRFCGHCGEKTIP 198 (417)
Q Consensus 186 ~~fC~~CG~~~~~ 198 (417)
-.|||.||.++..
T Consensus 30 k~FCp~CGn~TL~ 42 (79)
T 2con_A 30 RVFCGHCGNKTLK 42 (79)
T ss_dssp CCSCSSSCCSCCE
T ss_pred cccccccCcccce
Confidence 4899999998743
No 94
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=63.85 E-value=0.94 Score=42.06 Aligned_cols=74 Identities=27% Similarity=0.358 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhccCccccCCCcceeccCccceeecCCCCCCcccCCcCcEEEEEEEecCCCEEEEEEecCCCCCcEEe
Q 014873 172 IAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSC 251 (417)
Q Consensus 172 ~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlvi~~~~~kVLL~rr~~~~~g~Wsl 251 (417)
...-|.+|..=..+.++|..||.-+. ......|.+ |+-+.-++++|-+. .-|+-..+.+.+.|.|-.
T Consensus 40 ~~~La~al~~~~~~i~~C~~C~nlte---~~~C~IC~d--------~~Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~YhV 106 (228)
T 1vdd_A 40 IERLASALLEAKRDLHVCPICFNITD---AEKCDVCAD--------PSRDQRTICVVEEP--GDVIALERSGEYRGLYHV 106 (228)
T ss_dssp HHHHHHHHHHHHHHCEECSSSCCEES---SSSCHHHHC--------SSSCTTEEEEESSH--HHHHHTTTTSSCCSEEEE
T ss_pred HHHHHHHHHHHHhcCeEcCCCCCCcC---CCcCCCCCC--------CCcCCCeEEEECCH--HHHHHHHHhcccceEEEe
Confidence 34458889999999999999999753 334444442 33344455555443 346666777788999999
Q ss_pred eeeeccC
Q 014873 252 IAGFIEP 258 (417)
Q Consensus 252 PgG~VE~ 258 (417)
.+|.+.|
T Consensus 107 LgG~lSP 113 (228)
T 1vdd_A 107 LHGVLSP 113 (228)
T ss_dssp CSSCCBG
T ss_pred cCCccCc
Confidence 9998875
No 95
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=63.39 E-value=4.2 Score=36.09 Aligned_cols=32 Identities=13% Similarity=0.566 Sum_probs=26.1
Q ss_pred cCccccCCCcceeccCccceeecCCCCCCcccCCcC
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVD 221 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~ 221 (417)
.-+|+.||.++.+.. ..++|+ .|+.....++.
T Consensus 140 ~a~~~~~g~~m~~~~--~~~~cp--~~g~~e~RKva 171 (179)
T 3m7n_A 140 RALCSNCKTEMVREG--DILKCP--ECGRVEKRKIS 171 (179)
T ss_dssp ECBCTTTCCBCEECS--SSEECS--SSCCEECCCBC
T ss_pred EecccccCCceEECC--CEEECC--CCCCEEEEecc
Confidence 578999999998855 789998 69998776654
No 96
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=62.44 E-value=3.5 Score=37.24 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=25.9
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCccc
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (417)
+.++.||+||..+.+.....|..|. .|+..++
T Consensus 111 ~~~~~Cp~Cg~g~fma~h~dR~~CG--kC~~t~~ 142 (189)
T 2xzm_9 111 LQQKGCPKCGPGIFMAKHYDRHYCG--KCHLTLK 142 (189)
T ss_dssp ECSEECSTTCSSCEEEECSSCEEET--TTCCCBC
T ss_pred EccccCCccCCCccccCccCCCccC--CceeEEE
Confidence 3469999999998887766788997 6988765
No 97
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.93 E-value=4.6 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=21.6
Q ss_pred hccCccccCCC-cceeccCccceeecCCCCCCcc
Q 014873 184 NVSRFCGHCGE-KTIPKEAGKLKQCSNASCKKRI 216 (417)
Q Consensus 184 ~~~~fC~~CG~-~~~~~~~g~~~~C~~~~C~~~~ 216 (417)
.....||.||. .+......-..+|. .||.+.
T Consensus 9 l~~~~Cp~C~~~~lv~D~~~ge~vC~--~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVEDYRAGDMICP--ECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSCCEECSSSCCEECT--TTCCEE
T ss_pred cccccCcCCCCCceeEeCCCCeEEeC--CCCCEE
Confidence 34567999998 55555455668897 698764
No 98
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=57.48 E-value=6.2 Score=38.31 Aligned_cols=37 Identities=27% Similarity=0.657 Sum_probs=25.0
Q ss_pred ccCccccCCCccee---c----cCc-cceeecCCCCCCc-ccCCcCcE
Q 014873 185 VSRFCGHCGEKTIP---K----EAG-KLKQCSNASCKKR-IYPRVDPV 223 (417)
Q Consensus 185 ~~~fC~~CG~~~~~---~----~~g-~~~~C~~~~C~~~-~ypr~~pv 223 (417)
...|||.||++-.. . ..| +...|. -|++. +|+|+.+.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs--~C~t~W~~~R~~C~ 226 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCS--LCACEWHYVRIKCS 226 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEET--TTCCEEECCTTSCS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeC--CCCCEEeecCcCCc
Confidence 36899999998643 2 123 456675 69887 77777653
No 99
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=56.94 E-value=5 Score=31.19 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=22.1
Q ss_pred hhccCccccCCCcceeccCccceeecCCCCCCc
Q 014873 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
..+.++||.|+..+.......+..|+ .|++.
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~--~C~~~ 52 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCP--QCHQT 52 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECT--TTCCE
T ss_pred CCCEeECcCCCchheecCCCCceEeC--CCCCc
Confidence 34567899999988665555667886 57754
No 100
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=56.32 E-value=5.2 Score=30.27 Aligned_cols=30 Identities=17% Similarity=0.460 Sum_probs=21.4
Q ss_pred CccccCCCcceeccCccceeecCCCCCC-cccCC
Q 014873 187 RFCGHCGEKTIPKEAGKLKQCSNASCKK-RIYPR 219 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~-~~ypr 219 (417)
--|+.||...... .+...+|+ .||. +.|..
T Consensus 29 Y~C~~CG~~~e~~-~~d~irCp--~CG~RILyK~ 59 (70)
T 1twf_L 29 YICAECSSKLSLS-RTDAVRCK--DCGHRILLKA 59 (70)
T ss_dssp EECSSSCCEECCC-TTSTTCCS--SSCCCCCBCC
T ss_pred EECCCCCCcceeC-CCCCccCC--CCCceEeEec
Confidence 4699999997665 34455797 6998 55543
No 101
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=55.01 E-value=2.5 Score=44.84 Aligned_cols=30 Identities=33% Similarity=0.734 Sum_probs=0.0
Q ss_pred CccccCCCccee-ccCccceeecCC-CCCCcc
Q 014873 187 RFCGHCGEKTIP-KEAGKLKQCSNA-SCKKRI 216 (417)
Q Consensus 187 ~fC~~CG~~~~~-~~~g~~~~C~~~-~C~~~~ 216 (417)
..||.||+++.. .+++...+|+|+ .|....
T Consensus 416 ~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~ 447 (615)
T 3sgi_A 416 TTCPECGSPLAPEKEGDADIRCPNARGCPGQL 447 (615)
T ss_dssp --------------------------------
T ss_pred CCCCCCCCeeeecCCCCEEEEcCCCCCCHHHH
Confidence 579999999987 566678899985 597643
No 102
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=54.71 E-value=3.5 Score=32.12 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=6.4
Q ss_pred ccccCCCccee
Q 014873 188 FCGHCGEKTIP 198 (417)
Q Consensus 188 fC~~CG~~~~~ 198 (417)
|||.||.++..
T Consensus 33 fCPeCgq~Le~ 43 (81)
T 2jrp_A 33 LCPDCRQPLQV 43 (81)
T ss_dssp ECSSSCSCCCE
T ss_pred cCcchhhHHHH
Confidence 56666666643
No 103
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=54.56 E-value=4.9 Score=42.44 Aligned_cols=28 Identities=21% Similarity=0.584 Sum_probs=23.5
Q ss_pred CccccCCCcceeccCccceeecCC-CCCC
Q 014873 187 RFCGHCGEKTIPKEAGKLKQCSNA-SCKK 214 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~-~C~~ 214 (417)
.+||.||+++...+++...+|+|+ .|..
T Consensus 406 ~~CP~Cgs~~~~~~~~~~~rC~n~~~Cpa 434 (586)
T 4glx_A 406 THCPVCGSDVERVEGEAVARCTGGLICGA 434 (586)
T ss_dssp SBCTTTCCBEECCTTCSCCEESCGGGCHH
T ss_pred CcCCCCCCchhhhhcccccEeCCCcCcHH
Confidence 689999999988888888899874 5864
No 104
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=52.98 E-value=5.7 Score=42.63 Aligned_cols=28 Identities=21% Similarity=0.564 Sum_probs=23.0
Q ss_pred CccccCCCcceeccCccceeecC-CCCCC
Q 014873 187 RFCGHCGEKTIPKEAGKLKQCSN-ASCKK 214 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~-~~C~~ 214 (417)
..||.||+++...+++...+|++ ..|..
T Consensus 406 ~~CP~Cgs~l~~~~~~~~~rC~n~~~Cpa 434 (671)
T 2owo_A 406 THCPVCGSDVERVEGEAVARCTGGLICGA 434 (671)
T ss_dssp SBCTTTCCBEEECTTCSCEEECCGGGCHH
T ss_pred CCCCCCCCEeEEecCCEEEECCCCCCCHH
Confidence 68999999998777778888995 35864
No 105
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=51.81 E-value=6.3 Score=29.89 Aligned_cols=25 Identities=28% Similarity=0.864 Sum_probs=20.4
Q ss_pred ccccCCCcceeccCccceeecCCCCCCcc
Q 014873 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (417)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (417)
-|| ||.......+.....|+ ||..+
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~---CG~~~ 30 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV---CGRTV 30 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET---TTEEE
T ss_pred ECC-CCCEEEEcCCCcEEECC---CCCee
Confidence 499 99999887877888895 98764
No 106
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=51.53 E-value=8 Score=33.48 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=26.9
Q ss_pred hccCcccc--CCCcceeccCccceeecCCCCCCccc
Q 014873 184 NVSRFCGH--CGEKTIPKEAGKLKQCSNASCKKRIY 217 (417)
Q Consensus 184 ~~~~fC~~--CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (417)
+..+.||+ ||.-..++.-..|..|. .|+..++
T Consensus 116 ~~~~~c~~~~cg~g~fma~h~~r~~cg--kc~~t~~ 149 (152)
T 3u5c_f 116 KLRRECSNPTCGAGVFLANHKDRLYCG--KCHSVYK 149 (152)
T ss_dssp CCSCBCCSTTSCSSSBEEECSSCEEES--SSSSCCE
T ss_pred ECcCcCCCccCCCceEecccCCCcccC--CCceEEE
Confidence 45689999 99999888888899996 6998765
No 107
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=50.29 E-value=5.6 Score=42.68 Aligned_cols=26 Identities=31% Similarity=0.844 Sum_probs=21.1
Q ss_pred CccccCCCcceeccCccceeecCCCCCC
Q 014873 187 RFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (417)
..||.||+++ .+++...+|+|+.|..
T Consensus 404 ~~CP~Cgs~l--~~g~~~~~C~n~~Cpa 429 (667)
T 1dgs_A 404 EACPECGHRL--VKEGKVHRCPNPLCPA 429 (667)
T ss_dssp SBCTTTCCBC--EEETTEEECCCTTCGG
T ss_pred CCCCCCCCCc--cCCCeEEEeCCCCChh
Confidence 6899999999 4555778899877975
No 108
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=43.34 E-value=9.3 Score=31.70 Aligned_cols=30 Identities=30% Similarity=0.726 Sum_probs=22.0
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCc
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
....+||.||+......+.-...|. .|+..
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~--~Cgk~ 87 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCS--YCDYK 87 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEET--TTCCE
T ss_pred ccCCcCCCCCCceeEecCceeEECC--CCCCE
Confidence 3457999999966555555567897 69886
No 109
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=42.42 E-value=2.8 Score=31.61 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=23.8
Q ss_pred ccCccccCCCcceec-cCccceeecCCCCCCccc
Q 014873 185 VSRFCGHCGEKTIPK-EAGKLKQCSNASCKKRIY 217 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~-~~g~~~~C~~~~C~~~~y 217 (417)
..+.||.||++.... ....+..|.. .|..+.+
T Consensus 8 ~~~~CP~Cgkp~~W~~~~~~rPFCSe-RCr~iDL 40 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGEISPFRPFCSK-RCQLIDL 40 (68)
T ss_dssp CEEECTTTCCEEECSSSSSCCSSSSH-HHHHHHH
T ss_pred CcCcCCCCCCcccccccCCCCcccCH-HHHhhhH
Confidence 467899999999764 3457888973 7876543
No 110
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=42.36 E-value=5.8 Score=29.01 Aligned_cols=23 Identities=22% Similarity=0.720 Sum_probs=16.3
Q ss_pred cCccccCCCcceeccCccceeec
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCS 208 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~ 208 (417)
.+||.+||..+.....-...+|.
T Consensus 33 ~r~CaRCGg~v~lr~~k~~WvC~ 55 (62)
T 2a20_A 33 TKFCARCGGRVSLRSNKVMWVCN 55 (62)
T ss_dssp CEECTTSEEEEESSTTCEEEEEH
T ss_pred CeeecccCCEeeecCCeEEEEeh
Confidence 47888888887766666666664
No 111
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=39.40 E-value=7.7 Score=30.19 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=24.5
Q ss_pred hccCccccCCCcceec---------c----------------CccceeecCCCCCCcccCCcCc
Q 014873 184 NVSRFCGHCGEKTIPK---------E----------------AGKLKQCSNASCKKRIYPRVDP 222 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~---------~----------------~g~~~~C~~~~C~~~~ypr~~p 222 (417)
....-||-||+++... + .+....|| .||...|-+.-|
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgEEFyG~~Lp 67 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGEEFYGKTLP 67 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCCEEETTSSC
T ss_pred cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccHHHhcccCC
Confidence 3346799999998321 0 13567797 799998877544
No 112
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=36.57 E-value=38 Score=25.73 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=22.2
Q ss_pred hhccCccccCCCcceeccCccceeecCCCCCCc
Q 014873 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
+.....||.||+......+--...|. +|+..
T Consensus 24 q~~ky~C~fCgk~~vkR~a~GIW~C~--~C~~~ 54 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRASTSIWVCG--HCGYK 54 (73)
T ss_pred cccCccCCCCCCceeEEEEeEEEECC--CCCcE
Confidence 34457899999876555555557797 69886
No 113
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=36.04 E-value=20 Score=27.22 Aligned_cols=28 Identities=39% Similarity=0.801 Sum_probs=21.2
Q ss_pred cCccccCCCcceeccCccceeecCCCCCCc
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
...||.||+......+--...|. .|+..
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~--~C~~~ 53 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCS--CCKKT 53 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCS--SSCCC
T ss_pred CccCCCCCCceeEecCCCeEECC--CCCCE
Confidence 36799999987666666667786 69865
No 114
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.37 E-value=21 Score=33.63 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=18.3
Q ss_pred CccccCCCcceeccCc--cceeecCCCCCC
Q 014873 187 RFCGHCGEKTIPKEAG--KLKQCSNASCKK 214 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~g--~~~~C~~~~C~~ 214 (417)
+-|+.||+++....-+ .-..|| .|+.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP--~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP--TCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT--TTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC--CCCC
Confidence 6699999998664333 455676 6975
No 115
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.15 E-value=21 Score=26.31 Aligned_cols=30 Identities=23% Similarity=0.731 Sum_probs=21.9
Q ss_pred ccCccccCCCcceeccCccceeecCCCCCCccc
Q 014873 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (417)
-.--|+.||...... .+...+|+ .||....
T Consensus 20 v~Y~C~~Cg~~~~l~-~~~~iRC~--~CG~RIL 49 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ-AKEVIRCR--ECGHRVM 49 (63)
T ss_dssp CCCBCSSSCCBCCCC-SSSCCCCS--SSCCCCC
T ss_pred eEEECCCCCCeeecC-CCCceECC--CCCcEEE
Confidence 346799999998754 45667797 5987643
No 116
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=34.08 E-value=16 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.625 Sum_probs=20.1
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCc
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
.+|..|++||....+. .+..|. .||+.
T Consensus 14 KtH~lCrRCG~~sfH~---qK~~Cg--kCGYp 40 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL---QKSTCG--KCGYP 40 (97)
T ss_dssp CCEECCTTTCSSCEET---TSCCBT--TTCTT
T ss_pred CCCCcCCCCCCccCcC---ccccCc--ccCCc
Confidence 4578999999998743 466786 68864
No 117
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=33.90 E-value=23 Score=24.66 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=23.6
Q ss_pred CccccCCCcceeccCc--cceeecCCCCCCcccCCcCcE
Q 014873 187 RFCGHCGEKTIPKEAG--KLKQCSNASCKKRIYPRVDPV 223 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~g--~~~~C~~~~C~~~~ypr~~pv 223 (417)
--|.+||......+-. -.-.|| -||+..+-.+.+-
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCp--yCGyrii~KvR~p 40 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCP--YCGYKIIFMVRKP 40 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCT--TTCCSCEECCCCC
T ss_pred EEeeccCCCccHHHHhhCCCcccC--ccCcEEEEEecCC
Confidence 3599999998655433 344587 5999877666553
No 118
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=33.78 E-value=18 Score=28.72 Aligned_cols=27 Identities=30% Similarity=0.726 Sum_probs=20.8
Q ss_pred CccccCCCcceeccCccceeecCCCCCCc
Q 014873 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
..||.||+......+--...|. +|+..
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~--~Cg~~ 63 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCK--DCGKV 63 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECS--SSCCE
T ss_pred ccCcccCCCeeEecCcceEEcC--CCCCE
Confidence 4899999997766665667796 69865
No 119
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.56 E-value=20 Score=27.95 Aligned_cols=28 Identities=25% Similarity=0.640 Sum_probs=21.5
Q ss_pred cCccccCCCcceeccCccceeecCCCCCCc
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
...||.||+......+--...|. .|+..
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~--kCg~~ 62 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQ--KCGAT 62 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEET--TTCCE
T ss_pred ccCCCCCCCceeEecCcCeEEcC--CCCCE
Confidence 46799999997766666667797 69875
No 120
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.56 E-value=18 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=22.0
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCC
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (417)
.+.+-||.|+.+++...+=....|..+.|+.
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~ 34 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKA 34 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGS
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCC
Confidence 3468999999999876655777776323654
No 121
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=33.42 E-value=19 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=17.6
Q ss_pred ccCccccCCCcceeccCccceeecCCCCCCcc
Q 014873 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (417)
+.+.|+.||.-+. ..+|+ .||...
T Consensus 5 ~mr~C~~CgvYTL------k~~CP--~CG~~T 28 (60)
T 2apo_B 5 RMKKCPKCGLYTL------KEICP--KCGEKT 28 (60)
T ss_dssp CCEECTTTCCEES------SSBCS--SSCSBC
T ss_pred hceeCCCCCCEec------cccCc--CCCCcC
Confidence 5688999987775 56686 588653
No 122
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=33.19 E-value=8.2 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=20.8
Q ss_pred ccCccccCCCcceeccCc-cceeecCCCCCC
Q 014873 185 VSRFCGHCGEKTIPKEAG-KLKQCSNASCKK 214 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g-~~~~C~~~~C~~ 214 (417)
....|..||.++.....+ .++.|.. +|..
T Consensus 17 ~~~~C~~CG~~i~~~~~~r~krFCS~-sCR~ 46 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAEQFRGSKRFCSM-TCAK 46 (49)
T ss_dssp SEEECTTTCCEEEGGGCTTTSSSCSH-HHHH
T ss_pred CCCcChhccCccccccCCCCCccCCH-HHHh
Confidence 346799999999876544 4688874 5643
No 123
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=33.09 E-value=19 Score=30.50 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=24.2
Q ss_pred ccCccccCCCcceeccCccceeecCCCCCCcccC
Q 014873 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (417)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (417)
...-||.|++..... .|....|| .|+.++-+
T Consensus 26 ~lP~CP~C~seytYe-Dg~l~vCP--eC~hEW~~ 56 (138)
T 2akl_A 26 TLPPCPQCNSEYTYE-DGALLVCP--ECAHEWSP 56 (138)
T ss_dssp CSCCCTTTCCCCCEE-CSSSEEET--TTTEEECT
T ss_pred cCCCCCCCCCcceEe-cCCeEECC--ccccccCC
Confidence 357899999998764 46678997 69998744
No 124
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=32.58 E-value=21 Score=33.54 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=19.3
Q ss_pred hhccCccccCCCcceeccC-c-cceeecCCCCC
Q 014873 183 HNVSRFCGHCGEKTIPKEA-G-KLKQCSNASCK 213 (417)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~-g-~~~~C~~~~C~ 213 (417)
.+.-+-|+.||+++....- | .-..|| .|+
T Consensus 231 gR~g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 261 (262)
T 1k3x_A 231 HRDGEPCERCGSIIEKTTLSSRPFYWCP--GCQ 261 (262)
T ss_dssp TCTTSBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CCCcCCCCCCCCEeEEEEECCCCeEECC--CCC
Confidence 3344679999999865433 3 455676 686
No 125
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=31.85 E-value=21 Score=33.74 Aligned_cols=26 Identities=27% Similarity=0.639 Sum_probs=18.2
Q ss_pred cCccccCCCcceecc-Cc-cceeecCCCCC
Q 014873 186 SRFCGHCGEKTIPKE-AG-KLKQCSNASCK 213 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~-~g-~~~~C~~~~C~ 213 (417)
-+-|+.||+++.... +| .-..|| .|+
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCP--RCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECC--CCC
Confidence 368999999986533 33 455676 696
No 126
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=31.79 E-value=21 Score=33.62 Aligned_cols=26 Identities=23% Similarity=0.675 Sum_probs=18.1
Q ss_pred CccccCCCcceeccC-c-cceeecCCCCCC
Q 014873 187 RFCGHCGEKTIPKEA-G-KLKQCSNASCKK 214 (417)
Q Consensus 187 ~fC~~CG~~~~~~~~-g-~~~~C~~~~C~~ 214 (417)
+-|+.||+++....- + .-..|| .|+.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP--~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP--VCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT--TTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECC--CCCC
Confidence 669999999865433 3 455676 6974
No 127
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=31.60 E-value=20 Score=28.49 Aligned_cols=28 Identities=39% Similarity=0.801 Sum_probs=21.1
Q ss_pred cCccccCCCcceeccCccceeecCCCCCCc
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
...||.||+......+--...|. +|+..
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~--~C~~~ 63 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGAAGIWTCS--CCKKT 63 (92)
T ss_dssp CCCCSSSCSSCCEEEETTEEECT--TTCCE
T ss_pred CCcCCCCCCceeeecccceEEcC--CCCCE
Confidence 46899999887666665667797 69765
No 128
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=31.52 E-value=22 Score=33.56 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=17.5
Q ss_pred CccccCCCcceecc-Cc-cceeecCCCCC
Q 014873 187 RFCGHCGEKTIPKE-AG-KLKQCSNASCK 213 (417)
Q Consensus 187 ~fC~~CG~~~~~~~-~g-~~~~C~~~~C~ 213 (417)
+-|+.||+++.... ++ .-..|| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR--QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC--CCC
Confidence 66999999986543 33 455676 686
No 129
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=29.89 E-value=18 Score=29.29 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=21.1
Q ss_pred cCccccCCCcceeccCccceeecCCCCCCc
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
...||.||+......+--...|. +|+..
T Consensus 36 ky~CpfCgk~~vKR~a~GIW~C~--kCg~~ 63 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVGIWKCK--PCKKI 63 (103)
T ss_dssp CEECTTTCCEEEEEEETTEEEET--TTTEE
T ss_pred CCCCCCCCCceeeecCcceEEcC--CCCCE
Confidence 46799999987766666667796 68764
No 130
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=29.43 E-value=28 Score=31.09 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=21.0
Q ss_pred hccCccccCCCc---ceeccCccceeecCCCCCCcc
Q 014873 184 NVSRFCGHCGEK---TIPKEAGKLKQCSNASCKKRI 216 (417)
Q Consensus 184 ~~~~fC~~CG~~---~~~~~~g~~~~C~~~~C~~~~ 216 (417)
....+||.||+. +......-..+|. .||.+.
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCs--dCGLVL 52 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCA--LCGLVL 52 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEET--TTCBBC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEc--CCCCCc
Confidence 334689999982 4444455677897 698764
No 131
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=26.89 E-value=31 Score=22.36 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=18.1
Q ss_pred ccccCCCccee---ccCccceeecCCCCCCcc
Q 014873 188 FCGHCGEKTIP---KEAGKLKQCSNASCKKRI 216 (417)
Q Consensus 188 fC~~CG~~~~~---~~~g~~~~C~~~~C~~~~ 216 (417)
.|+.||.|=.. .....-..|. .||...
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~--aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCM--ACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEE--TTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhh--cCCCcc
Confidence 49999999432 2334667786 698764
No 132
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=25.62 E-value=58 Score=28.66 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=20.5
Q ss_pred cCccccCCCcceeccCccceeecCCCCCCc
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (417)
+.=||.|.+++... .+.+..|+ .|+..
T Consensus 42 Y~ACp~CnKKV~~~-~~g~~~Ce--kC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGKSVLKY-HGDSFFCE--SCQQF 68 (172)
T ss_dssp EEECTTSCCCEEEE-TTTEEEET--TTTEE
T ss_pred ehhchhhCCEeeeC-CCCeEECC--CCCCC
Confidence 56799999999743 34466797 69987
No 133
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=25.48 E-value=14 Score=29.99 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.6
Q ss_pred ccCccccCCCccee
Q 014873 185 VSRFCGHCGEKTIP 198 (417)
Q Consensus 185 ~~~fC~~CG~~~~~ 198 (417)
++.||+.||.++..
T Consensus 66 ~r~FC~~CGs~l~~ 79 (118)
T 3fac_A 66 KHWFCRTCGIYTHH 79 (118)
T ss_dssp EEEEETTTCCEEEE
T ss_pred eeEECCCCCccccC
Confidence 46799999999854
No 134
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.00 E-value=32 Score=25.04 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=14.9
Q ss_pred HHhhhhccCccccCCCccee
Q 014873 179 LLEWHNVSRFCGHCGEKTIP 198 (417)
Q Consensus 179 l~~W~~~~~fC~~CG~~~~~ 198 (417)
+..|......||.|.+++..
T Consensus 53 i~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 53 VDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp HHHHHHHCSSCTTTCCCCCC
T ss_pred HHHHHHcCCcCcCcCCcCCC
Confidence 44566667889999988754
No 135
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=23.94 E-value=31 Score=24.74 Aligned_cols=22 Identities=9% Similarity=-0.162 Sum_probs=16.7
Q ss_pred HHHHhhhhccCccccCCCccee
Q 014873 177 RALLEWHNVSRFCGHCGEKTIP 198 (417)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~~~ 198 (417)
.++..|-.++..||.+|.++..
T Consensus 29 ~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 29 SLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp HHHHHHHHHHSBCTTTCCBCCG
T ss_pred HHHHHHHHhCCCCcCCcCCCCh
Confidence 3566677677779999999854
No 136
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.86 E-value=22 Score=28.50 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.8
Q ss_pred cCccccCCCccee
Q 014873 186 SRFCGHCGEKTIP 198 (417)
Q Consensus 186 ~~fC~~CG~~~~~ 198 (417)
..-||.||+++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5679999999864
No 137
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.62 E-value=38 Score=32.89 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=20.3
Q ss_pred cCccccCCCc---ceeccCccceeecCCCCCCcc
Q 014873 186 SRFCGHCGEK---TIPKEAGKLKQCSNASCKKRI 216 (417)
Q Consensus 186 ~~fC~~CG~~---~~~~~~g~~~~C~~~~C~~~~ 216 (417)
...||.||.. +......-..+|. .||.+.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~--~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCA--LCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCS--SSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecC--CCCeEc
Confidence 4589999995 4444444567897 699864
No 138
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=22.38 E-value=39 Score=22.76 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.3
Q ss_pred HHHhhhhccCccccCCCcc
Q 014873 178 ALLEWHNVSRFCGHCGEKT 196 (417)
Q Consensus 178 ~l~~W~~~~~fC~~CG~~~ 196 (417)
=+..|..+...||.|.+++
T Consensus 35 Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 35 CVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp HHHHTTTTCCSCSSSCCCS
T ss_pred HHHHHHHcCCcCcCCCCEe
Confidence 3567777788899998765
No 139
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=22.22 E-value=30 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=16.8
Q ss_pred hccCccccCCCcceeccCccceeecCCCCCCcc
Q 014873 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (417)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (417)
.+.+.|+.||.-+. ...|+ .||...
T Consensus 3 s~mr~C~~Cg~YTL------k~~CP--~CG~~t 27 (60)
T 2aus_D 3 FRIRKCPKCGRYTL------KETCP--VCGEKT 27 (60)
T ss_dssp -CCEECTTTCCEES------SSBCT--TTCSBC
T ss_pred ccceECCCCCCEEc------cccCc--CCCCcc
Confidence 35688999987664 45686 487653
No 140
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.88 E-value=49 Score=26.85 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=8.4
Q ss_pred cCccccCCCcc
Q 014873 186 SRFCGHCGEKT 196 (417)
Q Consensus 186 ~~fC~~CG~~~ 196 (417)
+..||.||+..
T Consensus 2 ~M~Cp~Cg~~~ 12 (133)
T 3o9x_A 2 HMKCPVCHQGE 12 (133)
T ss_dssp CCBCTTTSSSB
T ss_pred CcCCCcCCCCc
Confidence 56899998763
No 141
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.52 E-value=30 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=16.1
Q ss_pred cCccccCCCcceeccCccceeecCCCCCC
Q 014873 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (417)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (417)
...|+.||....+ ...|+ .||+
T Consensus 30 l~~c~~cG~~~~p-----H~vc~--~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKLS-----HHICP--NCGY 51 (60)
T ss_dssp CEECTTTCCEECT-----TBCCT--TTCB
T ss_pred ceECCCCCCEeCC-----ceEcC--CCCc
Confidence 4679999998543 45786 5983
No 142
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=21.45 E-value=37 Score=33.15 Aligned_cols=45 Identities=24% Similarity=0.690 Sum_probs=29.1
Q ss_pred HHHHHhhhhcc-------CccccCCCcc---ee-------c----cCc----cceeecCCCCCCc-ccCCcCc
Q 014873 176 ARALLEWHNVS-------RFCGHCGEKT---IP-------K----EAG----KLKQCSNASCKKR-IYPRVDP 222 (417)
Q Consensus 176 A~~l~~W~~~~-------~fC~~CG~~~---~~-------~----~~g----~~~~C~~~~C~~~-~ypr~~p 222 (417)
-++|++|..+. --|+.||+++ .. . ..| ..-.|. .|+.. -|||.+.
T Consensus 102 l~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~--~C~~~~rFPRYn~ 172 (335)
T 1x3z_A 102 VKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCN--RCGNITRFPRYND 172 (335)
T ss_dssp HHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEET--TTCCEEEEEEECC
T ss_pred HHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecC--CCCcccccCCcCC
Confidence 57899998874 4599999874 22 0 011 345687 69874 6777654
No 143
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.36 E-value=47 Score=25.19 Aligned_cols=30 Identities=20% Similarity=0.591 Sum_probs=20.9
Q ss_pred cCcccc--CCCcceeccCccceeecC---CCCCCc
Q 014873 186 SRFCGH--CGEKTIPKEAGKLKQCSN---ASCKKR 215 (417)
Q Consensus 186 ~~fC~~--CG~~~~~~~~g~~~~C~~---~~C~~~ 215 (417)
.++||+ ||..+..........|++ +.|++.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~ 59 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFA 59 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCe
Confidence 789999 999987655556677851 147653
Done!