Query 014874
Match_columns 416
No_of_seqs 295 out of 1676
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 09:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 2E-123 4E-128 915.4 39.3 358 51-409 2-362 (363)
2 TIGR00019 prfA peptide chain r 100.0 1E-106 2E-111 814.7 43.8 357 51-409 2-359 (360)
3 PRK00591 prfA peptide chain re 100.0 2E-105 4E-110 806.4 44.3 356 51-407 1-357 (359)
4 TIGR00020 prfB peptide chain r 100.0 6E-100 1E-104 767.3 41.3 338 55-398 22-362 (364)
5 PRK00578 prfB peptide chain re 100.0 6E-100 1E-104 768.4 40.0 341 55-401 22-365 (367)
6 PRK06746 peptide chain release 100.0 8E-100 2E-104 754.6 38.0 321 72-398 1-324 (326)
7 PRK05589 peptide chain release 100.0 3.3E-99 7E-104 751.1 38.6 321 72-399 1-324 (325)
8 PRK07342 peptide chain release 100.0 6.4E-98 1E-102 744.2 37.2 321 71-399 2-327 (339)
9 PRK08787 peptide chain release 100.0 4.9E-93 1.1E-97 701.6 34.9 299 94-400 2-304 (313)
10 KOG2726 Mitochondrial polypept 100.0 8.1E-93 1.8E-97 710.5 34.0 347 51-408 29-385 (386)
11 COG1186 PrfB Protein chain rel 100.0 7.7E-72 1.7E-76 531.5 19.2 234 164-398 1-237 (239)
12 TIGR03072 release_prfH putativ 100.0 8.8E-65 1.9E-69 475.4 24.5 198 164-366 1-199 (200)
13 PRK08179 prfH peptide chain re 100.0 1.4E-63 3.1E-68 467.2 23.5 195 164-364 2-198 (200)
14 PF00472 RF-1: RF-1 domain; I 100.0 2.3E-36 4.9E-41 260.9 10.9 110 264-373 4-113 (113)
15 PF03462 PCRF: PCRF domain; I 100.0 7.4E-33 1.6E-37 239.6 13.5 113 119-231 3-115 (115)
16 PRK09256 hypothetical protein; 99.8 2E-21 4.4E-26 173.5 7.7 70 266-335 7-100 (138)
17 KOG3429 Predicted peptidyl-tRN 99.6 2.6E-15 5.7E-20 136.1 6.6 71 265-335 33-128 (172)
18 PRK10636 putative ABC transpor 89.8 1.1 2.5E-05 49.4 8.3 61 53-113 567-630 (638)
19 PRK11147 ABC transporter ATPas 85.1 2.7 5.9E-05 46.3 7.7 53 53-105 572-626 (635)
20 PRK10884 SH3 domain-containing 76.1 26 0.00057 33.7 10.2 26 50-75 87-112 (206)
21 TIGR03545 conserved hypothetic 76.0 15 0.00032 40.4 9.4 19 174-192 287-305 (555)
22 TIGR00634 recN DNA repair prot 72.0 1.6E+02 0.0034 32.2 18.8 119 78-220 297-427 (563)
23 PF03962 Mnd1: Mnd1 family; I 71.1 37 0.00081 32.1 9.7 154 35-197 10-171 (188)
24 KOG0971 Microtubule-associated 70.7 26 0.00057 40.7 9.8 59 91-152 289-351 (1243)
25 PRK05431 seryl-tRNA synthetase 70.3 1E+02 0.0022 32.7 13.8 23 130-152 77-99 (425)
26 PF08317 Spc7: Spc7 kinetochor 69.1 1.4E+02 0.003 30.4 15.6 120 52-203 180-300 (325)
27 KOG1760 Molecular chaperone Pr 65.8 81 0.0017 28.4 9.9 72 78-149 16-104 (131)
28 PRK10869 recombination and rep 64.8 1E+02 0.0022 33.8 12.9 71 79-149 293-364 (553)
29 PF13710 ACT_5: ACT domain; PD 57.7 29 0.00063 26.9 5.2 38 185-222 6-43 (63)
30 PRK11546 zraP zinc resistance 56.1 66 0.0014 29.5 8.0 40 58-99 67-106 (143)
31 PF03915 AIP3: Actin interacti 55.6 2.2E+02 0.0048 30.5 13.0 56 53-108 217-272 (424)
32 PF15188 CCDC-167: Coiled-coil 55.2 85 0.0018 26.4 7.8 59 87-151 3-61 (85)
33 PF12777 MT: Microtubule-bindi 55.1 48 0.001 34.0 7.8 55 63-119 170-224 (344)
34 KOG0995 Centromere-associated 53.8 1.4E+02 0.003 33.1 11.3 52 54-107 233-284 (581)
35 PF03962 Mnd1: Mnd1 family; I 51.4 2.2E+02 0.0047 26.9 11.1 30 122-151 131-160 (188)
36 COG1579 Zn-ribbon protein, pos 50.8 2.6E+02 0.0057 27.7 12.1 40 55-97 65-104 (239)
37 PF04350 PilO: Pilus assembly 49.7 70 0.0015 27.7 7.0 43 181-223 52-97 (144)
38 COG1196 Smc Chromosome segrega 49.6 3.2E+02 0.007 32.7 14.5 77 124-204 1004-1096(1163)
39 PF12718 Tropomyosin_1: Tropom 47.8 2.1E+02 0.0046 25.8 10.7 57 53-120 11-67 (143)
40 PRK11152 ilvM acetolactate syn 47.8 44 0.00095 27.3 5.0 43 185-227 17-59 (76)
41 PF09032 Siah-Interact_N: Siah 47.2 52 0.0011 27.2 5.4 44 103-147 4-47 (79)
42 PF10458 Val_tRNA-synt_C: Valy 46.5 43 0.00092 26.2 4.6 26 53-78 8-33 (66)
43 COG1340 Uncharacterized archae 46.0 2.6E+02 0.0057 28.6 11.2 44 58-103 109-152 (294)
44 PRK06737 acetolactate synthase 45.6 57 0.0012 26.6 5.3 39 185-223 16-54 (76)
45 smart00806 AIP3 Actin interact 45.4 3.7E+02 0.0081 28.9 12.6 55 53-107 221-275 (426)
46 TIGR02231 conserved hypothetic 44.3 4.4E+02 0.0095 28.4 13.5 41 130-171 149-189 (525)
47 PF07426 Dynactin_p22: Dynacti 44.3 1.2E+02 0.0027 28.4 8.1 64 56-119 5-71 (174)
48 PF11553 DUF3231: Protein of u 43.2 1.8E+02 0.0038 26.4 8.9 63 95-158 17-81 (166)
49 PRK11637 AmiB activator; Provi 43.1 3E+02 0.0064 28.9 11.7 20 54-73 45-64 (428)
50 COG0497 RecN ATPase involved i 42.0 5.3E+02 0.012 28.7 18.4 91 57-149 274-365 (557)
51 COG1579 Zn-ribbon protein, pos 41.7 3.6E+02 0.0079 26.7 12.1 21 182-202 174-195 (239)
52 PF09177 Syntaxin-6_N: Syntaxi 40.4 2.2E+02 0.0047 23.7 10.8 85 54-150 10-94 (97)
53 PRK03918 chromosome segregatio 39.9 3.4E+02 0.0074 30.9 12.3 13 85-97 588-600 (880)
54 COG5491 VPS24 Conserved protei 39.6 2.9E+02 0.0063 26.8 9.9 55 54-108 50-108 (204)
55 TIGR03185 DNA_S_dndD DNA sulfu 39.1 3.4E+02 0.0075 30.2 11.9 44 54-100 396-439 (650)
56 COG3378 Phage associated DNA p 38.2 2E+02 0.0044 31.6 9.7 22 180-201 438-459 (517)
57 PLN02320 seryl-tRNA synthetase 37.7 4.8E+02 0.01 28.6 12.4 23 130-152 141-163 (502)
58 KOG3274 Uncharacterized conser 37.7 23 0.00051 34.0 2.2 108 185-300 76-184 (210)
59 PF08317 Spc7: Spc7 kinetochor 37.2 4.6E+02 0.01 26.6 11.8 64 84-147 165-230 (325)
60 PF14257 DUF4349: Domain of un 36.6 1.8E+02 0.004 28.3 8.4 64 103-170 140-203 (262)
61 PF06160 EzrA: Septation ring 35.9 3.8E+02 0.0083 29.5 11.5 93 54-160 349-441 (560)
62 PRK13562 acetolactate synthase 35.4 93 0.002 26.1 5.1 40 185-224 16-56 (84)
63 KOG0804 Cytoplasmic Zn-finger 35.2 4.1E+02 0.0089 28.9 11.0 29 126-154 421-449 (493)
64 PF07139 DUF1387: Protein of u 34.8 1.8E+02 0.0038 29.9 8.0 77 54-146 180-256 (302)
65 PRK06342 transcription elongat 34.8 93 0.002 28.8 5.6 24 131-154 62-85 (160)
66 smart00787 Spc7 Spc7 kinetocho 33.9 5.3E+02 0.012 26.4 11.6 23 181-203 273-295 (312)
67 PF00587 tRNA-synt_2b: tRNA sy 33.6 1.2E+02 0.0026 27.3 6.1 49 171-220 118-167 (173)
68 PF10805 DUF2730: Protein of u 33.1 3.1E+02 0.0068 23.4 8.6 59 54-118 40-98 (106)
69 smart00150 SPEC Spectrin repea 32.6 2.3E+02 0.0051 21.8 14.2 49 55-103 4-52 (101)
70 PRK04863 mukB cell division pr 32.6 1.6E+02 0.0034 36.5 8.4 130 54-191 374-508 (1486)
71 PF11593 Med3: Mediator comple 32.4 2.1E+02 0.0045 30.2 8.2 82 64-151 9-90 (379)
72 PF00831 Ribosomal_L29: Riboso 32.3 1E+02 0.0022 23.6 4.7 54 45-99 3-56 (58)
73 PLN03229 acetyl-coenzyme A car 32.1 2.2E+02 0.0047 32.8 8.9 25 53-77 601-626 (762)
74 PRK03918 chromosome segregatio 31.8 4.4E+02 0.0095 30.0 11.5 9 91-99 275-283 (880)
75 PRK05431 seryl-tRNA synthetase 31.7 2.7E+02 0.006 29.5 9.3 26 130-155 84-109 (425)
76 PLN02678 seryl-tRNA synthetase 31.5 6.9E+02 0.015 26.9 14.2 23 130-152 82-104 (448)
77 cd01018 ZntC Metal binding pro 31.1 1.6E+02 0.0034 28.7 6.9 56 73-153 110-165 (266)
78 PTZ00419 valyl-tRNA synthetase 30.4 1.3E+02 0.0027 35.5 7.1 46 53-99 933-978 (995)
79 PF04420 CHD5: CHD5-like prote 30.4 2.6E+02 0.0056 25.6 7.8 42 53-94 37-78 (161)
80 PRK11637 AmiB activator; Provi 30.0 5.1E+02 0.011 27.2 10.9 84 59-150 43-127 (428)
81 TIGR02421 QEGLA conserved hypo 29.6 56 0.0012 34.3 3.6 70 175-251 134-210 (366)
82 PF14257 DUF4349: Domain of un 29.2 3.8E+02 0.0083 26.1 9.2 88 56-151 105-194 (262)
83 TIGR01219 Pmev_kin_ERG8 phosph 29.0 1.2E+02 0.0026 32.7 6.1 43 162-207 395-442 (454)
84 PF06248 Zw10: Centromere/kine 28.9 8.1E+02 0.017 26.9 13.6 63 54-116 51-117 (593)
85 PRK06851 hypothetical protein; 28.9 6.7E+02 0.014 26.3 11.4 34 165-205 218-251 (367)
86 KOG2509 Seryl-tRNA synthetase 28.8 4.3E+02 0.0093 28.6 9.9 70 81-153 47-116 (455)
87 KOG1086 Cytosolic sorting prot 28.7 2.5E+02 0.0053 30.6 8.1 59 80-145 204-266 (594)
88 PLN02943 aminoacyl-tRNA ligase 28.6 1.3E+02 0.0028 35.4 6.7 46 52-99 892-938 (958)
89 PF07851 TMPIT: TMPIT-like pro 28.4 6.9E+02 0.015 26.0 13.2 39 124-171 66-104 (330)
90 PRK00578 prfB peptide chain re 28.4 5.1E+02 0.011 27.3 10.4 19 54-72 5-23 (367)
91 PF10146 zf-C4H2: Zinc finger- 28.4 5.8E+02 0.013 25.1 10.5 70 87-156 37-112 (230)
92 PRK09545 znuA high-affinity zi 28.4 2.3E+02 0.005 28.6 7.7 55 74-153 144-198 (311)
93 COG2433 Uncharacterized conser 28.2 1.5E+02 0.0033 33.3 6.6 33 54-86 350-382 (652)
94 PF07106 TBPIP: Tat binding pr 27.8 4.6E+02 0.01 23.8 9.0 64 80-151 70-134 (169)
95 PF01544 CorA: CorA-like Mg2+ 27.6 3.8E+02 0.0082 25.5 8.9 21 53-73 122-142 (292)
96 PF02815 MIR: MIR domain; Int 27.5 96 0.0021 28.6 4.5 36 278-313 123-158 (190)
97 cd01145 TroA_c Periplasmic bin 26.2 2.2E+02 0.0048 26.6 6.8 56 73-153 106-161 (203)
98 PF03310 Cauli_DNA-bind: Cauli 26.2 3.7E+02 0.008 24.1 7.6 57 95-151 6-65 (121)
99 PRK06034 hypothetical protein; 26.0 7.1E+02 0.015 25.3 16.0 114 169-285 100-215 (279)
100 PRK09039 hypothetical protein; 26.0 7.4E+02 0.016 25.5 12.8 37 81-117 115-152 (343)
101 TIGR00020 prfB peptide chain r 25.8 5.4E+02 0.012 27.1 10.0 18 54-71 5-22 (364)
102 TIGR00414 serS seryl-tRNA synt 25.7 8.2E+02 0.018 25.9 13.8 22 130-151 80-101 (418)
103 PRK05892 nucleoside diphosphat 25.4 5.3E+02 0.012 23.6 9.0 74 74-155 3-76 (158)
104 KOG0933 Structural maintenance 25.3 7.2E+02 0.016 29.9 11.5 102 42-150 157-282 (1174)
105 PF13450 NAD_binding_8: NAD(P) 25.2 1E+02 0.0023 23.8 3.7 38 194-239 17-54 (68)
106 PRK08178 acetolactate synthase 24.9 1.4E+02 0.0031 25.6 4.6 55 187-241 24-82 (96)
107 TIGR00383 corA magnesium Mg(2+ 24.6 6.3E+02 0.014 24.9 10.0 22 54-75 147-168 (318)
108 PLN02678 seryl-tRNA synthetase 24.6 3.1E+02 0.0066 29.6 8.1 42 129-170 88-132 (448)
109 cd01137 PsaA Metal binding pro 24.5 2.5E+02 0.0054 27.9 7.1 19 73-91 115-133 (287)
110 PRK04778 septation ring format 24.5 6.6E+02 0.014 27.6 10.9 46 52-101 168-217 (569)
111 PRK04778 septation ring format 24.0 6.7E+02 0.015 27.5 10.9 29 131-159 416-444 (569)
112 PF01297 TroA: Periplasmic sol 23.9 3.6E+02 0.0078 25.8 7.9 56 73-153 90-145 (256)
113 TIGR03545 conserved hypothetic 23.9 5.5E+02 0.012 28.5 10.1 29 366-394 496-524 (555)
114 PF05791 Bacillus_HBL: Bacillu 23.9 5.4E+02 0.012 24.0 8.8 12 135-146 165-176 (184)
115 COG1196 Smc Chromosome segrega 23.8 9.2E+02 0.02 29.0 12.7 19 80-98 211-229 (1163)
116 KOG1489 Predicted GTP-binding 23.4 2.5E+02 0.0053 29.5 6.8 105 164-286 45-161 (366)
117 PF15188 CCDC-167: Coiled-coil 23.2 4.5E+02 0.0099 22.1 7.5 49 53-103 9-57 (85)
118 KOG1697 Mitochondrial/chloropl 23.1 67 0.0014 32.2 2.6 18 245-262 153-170 (275)
119 cd01019 ZnuA Zinc binding prot 22.9 4.5E+02 0.0099 26.0 8.6 57 73-154 119-175 (286)
120 TIGR03007 pepcterm_ChnLen poly 22.8 8.9E+02 0.019 25.6 11.3 20 54-73 252-271 (498)
121 TIGR00414 serS seryl-tRNA synt 22.8 4.7E+02 0.01 27.7 9.1 25 130-154 87-111 (418)
122 PF02403 Seryl_tRNA_N: Seryl-t 22.7 4.5E+02 0.0098 21.9 7.7 24 130-153 78-101 (108)
123 PF13851 GAS: Growth-arrest sp 22.6 6.8E+02 0.015 23.8 10.5 16 57-72 28-43 (201)
124 PF15035 Rootletin: Ciliary ro 22.6 6.6E+02 0.014 23.7 9.3 23 53-75 20-42 (182)
125 PF06248 Zw10: Centromere/kine 22.5 7.3E+02 0.016 27.2 10.8 21 53-73 11-31 (593)
126 PRK11546 zraP zinc resistance 22.3 6.1E+02 0.013 23.3 10.6 42 108-149 71-112 (143)
127 TIGR03499 FlhF flagellar biosy 22.2 7.7E+02 0.017 24.4 13.4 51 86-136 108-161 (282)
128 PF15397 DUF4618: Domain of un 22.2 7.2E+02 0.016 25.0 9.7 27 125-151 141-167 (258)
129 PRK14549 50S ribosomal protein 22.1 3.7E+02 0.0081 21.4 6.3 57 44-100 7-63 (69)
130 PF02403 Seryl_tRNA_N: Seryl-t 22.0 4.7E+02 0.01 21.8 11.4 21 130-150 71-91 (108)
131 KOG4674 Uncharacterized conser 21.9 1E+03 0.023 30.4 12.6 42 54-99 1283-1324(1822)
132 PF13514 AAA_27: AAA domain 21.9 6E+02 0.013 30.3 10.6 26 124-149 240-265 (1111)
133 PF06160 EzrA: Septation ring 21.3 8.6E+02 0.019 26.8 11.0 45 52-100 164-212 (560)
134 PRK02224 chromosome segregatio 20.8 9.1E+02 0.02 27.6 11.5 16 134-149 573-588 (880)
135 PF08657 DASH_Spc34: DASH comp 20.7 7.3E+02 0.016 24.8 9.4 71 77-149 172-255 (259)
136 PLN02381 valyl-tRNA synthetase 20.6 2.5E+02 0.0054 33.6 7.1 45 53-99 1001-1046(1066)
137 PF02185 HR1: Hr1 repeat; Int 20.5 4.2E+02 0.009 20.6 6.4 44 111-154 17-61 (70)
138 PRK00306 50S ribosomal protein 20.2 3.5E+02 0.0075 21.1 5.7 55 45-100 5-59 (66)
139 CHL00154 rpl29 ribosomal prote 20.2 3.9E+02 0.0085 21.3 6.0 56 44-100 7-62 (67)
140 PRK12723 flagellar biosynthesi 20.2 1E+03 0.022 25.1 14.5 123 80-206 81-216 (388)
141 PRK11020 hypothetical protein; 20.2 6.3E+02 0.014 22.5 7.8 25 123-147 28-52 (118)
142 cd01016 TroA Metal binding pro 20.1 3.3E+02 0.0072 26.8 6.9 18 74-91 100-117 (276)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-123 Score=915.36 Aligned_cols=358 Identities=50% Similarity=0.879 Sum_probs=350.9
Q ss_pred cchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 014874 51 EPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEM 130 (416)
Q Consensus 51 ~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~ 130 (416)
.+.|+.+|+.+..+|.+|+..|++|++..|++++++++|++++|.+++++|.+|+++..+++++++|+.++ .|+||++|
T Consensus 2 ~~~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~em 80 (363)
T COG0216 2 KPSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREM 80 (363)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999975 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCC
Q 014874 131 IASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKG 210 (416)
Q Consensus 131 a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~ 210 (416)
|++|+..++.++.+++++|+.+|||+||+|++|||||||||+||+||++||++||+||.+||+.+||+|++++.++++.|
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~G 160 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELG 160 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCcc-ccccCCCCeEEEEeeecCCCCccc
Q 014874 211 GFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEV-EVVIDPKDIELTTARSGGAGGQNV 289 (416)
Q Consensus 211 g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~-~~~i~~~dl~i~~~RssGpGGQ~V 289 (416)
|||++++.|+|.+||+.||||+|||||||||.|+++||+|||+|||+|||+++++ ++.|+|+||+|+||||||||||||
T Consensus 161 G~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhV 240 (363)
T COG0216 161 GYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHV 240 (363)
T ss_pred CceEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999875 799999999999999999999999
Q ss_pred cccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCcc
Q 014874 290 NKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRV 369 (416)
Q Consensus 290 Nkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rV 369 (416)
|+|+|||||||+||||||+||++||||+||++||++|++||++.+.+++.++....|++|+|+|+||++|||||||||||
T Consensus 241 NtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfPQnRV 320 (363)
T COG0216 241 NTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFPQNRV 320 (363)
T ss_pred CccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc-cCccccccC-CcHHHHHHHHHHHHHHHHHHHHh
Q 014874 370 TDHRLKMN-FELTSFLDG-NIDNAVQSCAAMEQKELLEELAE 409 (416)
Q Consensus 370 tDhR~~~~-~~l~~vl~G-~Ld~~I~a~~~~~~~~~l~~~~~ 409 (416)
||||||+| |+|+.||+| +||++|++|+.++|+++|+++..
T Consensus 321 TDHRI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~~ 362 (363)
T COG0216 321 TDHRINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELGE 362 (363)
T ss_pred cchhcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998 899999995 99999999999999999998753
No 2
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=1e-106 Score=814.73 Aligned_cols=357 Identities=49% Similarity=0.860 Sum_probs=349.0
Q ss_pred cchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 014874 51 EPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEM 130 (416)
Q Consensus 51 ~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~ 130 (416)
+|.+..+++.+.+++.+|+..+++|+||+|++++++++++++.|+++|+.|++|.++..++.++.+|+++ +|+||.++
T Consensus 2 ~~~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~ 79 (360)
T TIGR00019 2 KPSLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREM 79 (360)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999999999975 59999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCC
Q 014874 131 IASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKG 210 (416)
Q Consensus 131 a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~ 210 (416)
|.+|+..+..++++++.+|...|+|++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++..+++.|
T Consensus 80 a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~ 159 (360)
T TIGR00019 80 AKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELG 159 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCcccc
Q 014874 211 GFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVN 290 (416)
Q Consensus 211 g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VN 290 (416)
|||+|++.|+|++||++|+||+|||||||||+|+++||+|||||+|+|+|.++++++.|+++||+|+|+|||||||||||
T Consensus 160 g~ksa~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~VN 239 (360)
T TIGR00019 160 GYKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVEVDINPADLRIDTFRSSGAGGQHVN 239 (360)
T ss_pred cceEEEEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCccccccCcccEEEEEEECCCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred ccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCccc
Q 014874 291 KVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVT 370 (416)
Q Consensus 291 kt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVt 370 (416)
||+|||||+|+||||+|.||++|||++||+.||++|+++|++...+++.++....||+++++++||++||||||||+|||
T Consensus 240 kt~SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~~~~rV~ 319 (360)
T TIGR00019 240 TTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNFPQNRVT 319 (360)
T ss_pred ceeeeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEECCCCeee
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccccccc-cCccccccCCcHHHHHHHHHHHHHHHHHHHHh
Q 014874 371 DHRLKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEELAE 409 (416)
Q Consensus 371 DhR~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~~~l~~~~~ 409 (416)
|||||++ +||+.||+|+||+||++++.++++++|+++.+
T Consensus 320 DhRtg~~~~~l~~vl~G~Ld~~I~~~l~~~~~~~l~~~~~ 359 (360)
T TIGR00019 320 DHRINLTLYKLDEVLEGDLDELIEALIAEDQAQQLAALSE 359 (360)
T ss_pred eeccCCeEcChHHHhCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 9999997 89999999999999999999999999998864
No 3
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=1.7e-105 Score=806.35 Aligned_cols=356 Identities=49% Similarity=0.866 Sum_probs=348.1
Q ss_pred cchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 014874 51 EPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEM 130 (416)
Q Consensus 51 ~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~ 130 (416)
+|.++.+++.+++++.+|++.+++|+||+||+++++++++++.|+++++.|++|.++.++++++++|+++ ++|++|.++
T Consensus 1 ~~~~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~-e~D~~~~~~ 79 (359)
T PRK00591 1 KPSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE-ESDPEMREM 79 (359)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 4778999999999999999999999999999999999999999999999999999999999999999975 469999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCC
Q 014874 131 IASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKG 210 (416)
Q Consensus 131 a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~ 210 (416)
|.+|+..+..++++++.+|+..++|++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++..+++.|
T Consensus 80 ~~~e~~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~ 159 (359)
T PRK00591 80 AKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELG 159 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCcccc
Q 014874 211 GFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVN 290 (416)
Q Consensus 211 g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VN 290 (416)
||++|++.|+|++||++|+||+|||||||||+|++++|+||||++|+|+|+++++++.|+++||+++|+|||||||||||
T Consensus 160 g~ksa~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~VN 239 (359)
T PRK00591 160 GYKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVN 239 (359)
T ss_pred ceeEEEEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCccccccCcccEEEEEEECCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCccc
Q 014874 291 KVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVT 370 (416)
Q Consensus 291 kt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVt 370 (416)
||+|||||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++....||+++++++||++||||||||+|||
T Consensus 240 kt~saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~~~~V~ 319 (359)
T PRK00591 240 TTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFPQGRVT 319 (359)
T ss_pred ceeeeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cCccccccCCcHHHHHHHHHHHHHHHHHHH
Q 014874 371 DHRLKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEEL 407 (416)
Q Consensus 371 DhR~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~~~l~~~ 407 (416)
|||||++ +||++||+|+||+||++++.++++++|.++
T Consensus 320 DhRtg~~~~~l~~vl~G~Ld~fI~~~l~~~~~~~l~~~ 357 (359)
T PRK00591 320 DHRINLTLYKLDEVMEGDLDELIDALIAEDQAEKLAAL 357 (359)
T ss_pred eeccCCEEcChHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 9999997 899999999999999999999999999876
No 4
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=5.9e-100 Score=767.29 Aligned_cols=338 Identities=35% Similarity=0.556 Sum_probs=320.9
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 014874 55 ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASE 134 (416)
Q Consensus 55 ~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eE 134 (416)
..+|+.+++++.+|+..|++|+||+||+++++++++++.|.++++.|++|+...++++++.+|+++ ++|+||++||.+|
T Consensus 22 ~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~-e~D~e~~~~a~~e 100 (364)
T TIGR00020 22 SLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVE-EDDEETFNELDAE 100 (364)
T ss_pred hCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999975 4699999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceE
Q 014874 135 IKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKT 214 (416)
Q Consensus 135 l~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks 214 (416)
+..+..++++++. ..+|+||+|.++|+|||+||+||+||++||++||+||++||+++||++++++.++++.+||++
T Consensus 101 ~~~l~~~l~~le~----~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks 176 (364)
T TIGR00020 101 LKALEKKLAELEL----RTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKS 176 (364)
T ss_pred HHHHHHHHHHHHH----HhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEE
Confidence 9999999999983 346789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccC-CccccccCCCCeEEEEeeecCCCCccccccC
Q 014874 215 VVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEA-DEVEVVIDPKDIELTTARSGGAGGQNVNKVE 293 (416)
Q Consensus 215 ~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~-~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 293 (416)
|++.|+|++||++|++|+|||||||+|||+++||+|||||+|+|+|.+ +++++.|+++||+++++|||||||||||||+
T Consensus 177 ~~~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~ 256 (364)
T TIGR00020 177 VTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTD 256 (364)
T ss_pred EEEEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCcccceecccccEEEEEeeCCCCCCccccccc
Confidence 999999999999999999999999999999999999999999999999 4678999999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeec-CCCccccc
Q 014874 294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNY-KDNRVTDH 372 (416)
Q Consensus 294 saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf-~~~rVtDh 372 (416)
|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.+..|. ++...+||++|||||| |++|||||
T Consensus 257 saVri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~-~~~~~~rg~~IRtY~~~~~~rVtDh 335 (364)
T TIGR00020 257 SAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEG-EKSEIGWGSQIRSYVLHPYSMVKDL 335 (364)
T ss_pred eEEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCccCCeEEEECCCCCccccc
Confidence 999999999999999999999999999999999999999999888877777764 4445689999999999 55899999
Q ss_pred ccccc-cCccccccCCcHHHHHHHHHH
Q 014874 373 RLKMN-FELTSFLDGNIDNAVQSCAAM 398 (416)
Q Consensus 373 R~~~~-~~l~~vl~G~Ld~~I~a~~~~ 398 (416)
|||++ +||+.||+|+||+||++++.+
T Consensus 336 R~g~~~~~l~~vl~G~Ld~~I~a~~~~ 362 (364)
T TIGR00020 336 RTGYETGNVQAVLDGDIDQFIEAYLKW 362 (364)
T ss_pred ccCCeecChHHHhCCChHHHHHHHHhh
Confidence 99998 899999999999999999876
No 5
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=6.1e-100 Score=768.38 Aligned_cols=341 Identities=34% Similarity=0.564 Sum_probs=323.4
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 014874 55 ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASE 134 (416)
Q Consensus 55 ~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eE 134 (416)
..+++.+.+++.+|+..|++|+||+|++++++++++++.|.++++.|++|+....+++++.+|++++ .|+||++||++|
T Consensus 22 ~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e-~D~el~~~a~~e 100 (367)
T PRK00578 22 VLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEE-DDEETLAEAEAE 100 (367)
T ss_pred hCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999999763 699999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceE
Q 014874 135 IKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKT 214 (416)
Q Consensus 135 l~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks 214 (416)
+..+..++++++.+ .|++||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++.++++.|||++
T Consensus 101 ~~~l~~~l~~le~~----~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks 176 (367)
T PRK00578 101 LKALEKKLAALELE----RLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKS 176 (367)
T ss_pred HHHHHHHHHHHHHH----HhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeE
Confidence 99999999999832 45589999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCc-cccccCCCCeEEEEeeecCCCCccccccC
Q 014874 215 VVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADE-VEVVIDPKDIELTTARSGGAGGQNVNKVE 293 (416)
Q Consensus 215 ~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 293 (416)
|++.|+|++||++|++|+|||||||+|+|+++||+|||||+|+|+|++++ .++.|+++||+++++|||||||||||||+
T Consensus 177 ~~~~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~ 256 (367)
T PRK00578 177 ATFKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTD 256 (367)
T ss_pred EEEEEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCCccccccChhhEEEEEeeCCCCCCCccccee
Confidence 99999999999999999999999999999999999999999999999976 48899999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeec-CCCccccc
Q 014874 294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNY-KDNRVTDH 372 (416)
Q Consensus 294 saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf-~~~rVtDh 372 (416)
|||||+|+||||+|+||++|||++||+.|+++|+++|++++.+++.++....|+.+ +.++||++|||||| ||+|||||
T Consensus 257 saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~-~~~~rg~~IRtYn~~p~~rVtDh 335 (367)
T PRK00578 257 SAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEK-KEIGWGSQIRSYVLHPYQMVKDL 335 (367)
T ss_pred eEEEEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccCCeEEEECCCCceeeee
Confidence 99999999999999999999999999999999999999999988888877776544 78899999999999 77999999
Q ss_pred ccccc-cCccccccCCcHHHHHHHHHHHHH
Q 014874 373 RLKMN-FELTSFLDGNIDNAVQSCAAMEQK 401 (416)
Q Consensus 373 R~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~ 401 (416)
|||++ +||+.||+|+||+||++|+.+...
T Consensus 336 R~g~~~~~l~~vl~G~ld~~I~~l~~~~~~ 365 (367)
T PRK00578 336 RTGYETGNTQAVLDGDLDGFIEAYLRWRAS 365 (367)
T ss_pred ccCceecCHHHhhCCChHHHHHHHHHHHhc
Confidence 99998 899999999999999999987653
No 6
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=7.9e-100 Score=754.62 Aligned_cols=321 Identities=33% Similarity=0.571 Sum_probs=308.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 72 LADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKV 151 (416)
Q Consensus 72 l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~ 151 (416)
|..|+||+|++++++++++++.|+++|+.|++|++..+++.++.+|+++ +.|+||.+||.+|+..+.+++++++ .
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-~~d~e~~~~a~~e~~~l~~~l~~le----~ 75 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE-EYDEDLHEELESEVKGLIQEMNEYE----L 75 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 5689999999999999999999999999999999999999999999975 3699999999999999999999997 5
Q ss_pred hcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcccccc
Q 014874 152 LLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYE 231 (416)
Q Consensus 152 ~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E 231 (416)
.+||+||+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+||++|++.|+|++||++|++|
T Consensus 76 ~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E 155 (326)
T PRK06746 76 QLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAE 155 (326)
T ss_pred HhccCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEcCCCccCCceeeeeeEEEeeccCC-ccccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEc
Q 014874 232 SGVHRVQRVPQTEAQGRVHTSTATVAIMPEAD-EVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCT 310 (416)
Q Consensus 232 ~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~-~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~ 310 (416)
+|||||||+|||+++||+|||||+|+|+|+++ ++++.|+++||+++|+|||||||||||||+|||||+|+||||+|+||
T Consensus 156 ~GvHrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q 235 (326)
T PRK06746 156 KGVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 (326)
T ss_pred cceEEEEecCCCCCCCCeEeeEEEEEEecCcCCccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEEC
Confidence 99999999999999999999999999999995 68999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeec-CCCcccccccccc-cCccccccCCc
Q 014874 311 EERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNY-KDNRVTDHRLKMN-FELTSFLDGNI 388 (416)
Q Consensus 311 ~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf-~~~rVtDhR~~~~-~~l~~vl~G~L 388 (416)
++|||++||+.|+++|++||++++.+++.++....|+++++ .+||++|||||| |++||||||||++ +||+.||+|+|
T Consensus 236 ~~RSQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~-~~rg~~IRtYnf~p~~rVtDhR~~~~~~~l~~vl~G~l 314 (326)
T PRK06746 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKE-IGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEI 314 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CccCCCeEEEECCCCceeeeeecCceecChHHhhCCCH
Confidence 99999999999999999999999999999999999988875 479999999999 6789999999997 89999999999
Q ss_pred HHHHHHHHHH
Q 014874 389 DNAVQSCAAM 398 (416)
Q Consensus 389 d~~I~a~~~~ 398 (416)
|+||++++.+
T Consensus 315 d~~I~~~~~~ 324 (326)
T PRK06746 315 DPFIDAYLRS 324 (326)
T ss_pred HHHHHHHHHc
Confidence 9999999875
No 7
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.3e-99 Score=751.09 Aligned_cols=321 Identities=32% Similarity=0.569 Sum_probs=305.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 72 LADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKV 151 (416)
Q Consensus 72 l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~ 151 (416)
+++|+||+||+++++++++++.|+++++.|+.|+...++++++.+|+++ +|++|.++|.+|+..+++++++++ +
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~--~d~e~~~~a~~e~~~l~~~l~~~e----~ 74 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE--EDDEMKKEIISEVKNIKEEIDRFK----I 74 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 5799999999999999999999999999999999999999999999965 378899999999999999999986 6
Q ss_pred hcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcccccc
Q 014874 152 LLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYE 231 (416)
Q Consensus 152 ~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E 231 (416)
.+||+||+|.++|+|||+||+||+||++||++|++||++||+++||++++++.++++.+||+||++.|+|++||++|++|
T Consensus 75 ~~l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E 154 (325)
T PRK05589 75 ETLLSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAE 154 (325)
T ss_pred HhcCCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEcCCCccCCceeeeeeEEEeeccCCc-cccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEc
Q 014874 232 SGVHRVQRVPQTEAQGRVHTSTATVAIMPEADE-VEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCT 310 (416)
Q Consensus 232 ~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~ 310 (416)
+|||||||+|||++++|+||||++|+|+|++++ .++.|+++||+|+++|||||||||||||+|||||+|+||||+|+||
T Consensus 155 ~GvHrv~r~s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q 234 (325)
T PRK05589 155 KGIHRLVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQ 234 (325)
T ss_pred cceEEEEEcCCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEEC
Confidence 999999999999999999999999999999975 5899999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeec-CCCcccccccccc-cCccccccCCc
Q 014874 311 EERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNY-KDNRVTDHRLKMN-FELTSFLDGNI 388 (416)
Q Consensus 311 ~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf-~~~rVtDhR~~~~-~~l~~vl~G~L 388 (416)
++|||++||+.|+++|++||++++.++++++..+.| .+++..+||++|||||| |++||||||||++ +||+.||+|+|
T Consensus 235 ~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r-~~~~~~~~g~~IRtY~~~p~~rVtDhR~g~~~~~l~~vl~G~L 313 (325)
T PRK05589 235 NERSQHSNKETAMKMLKSKLVELKERAHKEKIEDLT-GELKDMGWGSQIRSYVFHPYNLVKDHRTGVETSNVDSVMDGDI 313 (325)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccCCceeeECCCCceeeeeccCceecChHHhhCCCH
Confidence 999999999999999999999999887777777665 56667889999999999 7789999999997 89999999999
Q ss_pred HHHHHHHHHHH
Q 014874 389 DNAVQSCAAME 399 (416)
Q Consensus 389 d~~I~a~~~~~ 399 (416)
|+||++++.|.
T Consensus 314 d~~I~a~l~~~ 324 (325)
T PRK05589 314 DNFITQYLKGN 324 (325)
T ss_pred HHHHHHHHhhc
Confidence 99999999763
No 8
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=6.4e-98 Score=744.23 Aligned_cols=321 Identities=32% Similarity=0.536 Sum_probs=301.9
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 71 KLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLK 150 (416)
Q Consensus 71 ~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~ 150 (416)
++++|+||+||+++++++++++.|+++++.|++|....++++++.+|++++ +|++|+++|..|+..+..++++++ +
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~e-~D~el~~~a~~e~~~l~~~l~~~e--l- 77 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEE-GDKSIVEDAEKTIRDLKDEIDRRQ--I- 77 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHH--H-
Confidence 468999999999999999999999999999999999999999999999753 699999999999999999999865 3
Q ss_pred hhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhccccc
Q 014874 151 VLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKY 230 (416)
Q Consensus 151 ~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~ 230 (416)
..++.+|+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+||++|++.|+|++||++|++
T Consensus 78 -~~lL~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~ 156 (339)
T PRK07342 78 -DALLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKT 156 (339)
T ss_pred -HHHhCCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhh
Confidence 3344699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcCCCccCCceeeeeeEEEeeccCCc-cccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEE
Q 014874 231 ESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADE-VEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFC 309 (416)
Q Consensus 231 E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~ 309 (416)
|+|||||||+|||++++|+|||||+|+|+|.+++ +++.|+++||+++++|||||||||||||+|||||+|+||||+|+|
T Consensus 157 E~GvHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~ 236 (339)
T PRK07342 157 ESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQC 236 (339)
T ss_pred ccceeEEEecCCCCCCCCeEeEEEEEEEEcCCCcccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEE
Confidence 9999999999999999999999999999999976 589999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccccCCcCCcceeeec-CCCcccccccccc-cCcccccc
Q 014874 310 TEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQR--LSQVGTGARAEKIRTYNY-KDNRVTDHRLKMN-FELTSFLD 385 (416)
Q Consensus 310 ~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r--~~~~~~~~Rse~IRtYnf-~~~rVtDhR~~~~-~~l~~vl~ 385 (416)
|++|||++||+.||++|+++|++++.+++.++.+..+ +.++ .||++|||||| ||+||||||||++ +||+.||+
T Consensus 237 ~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i---~~g~~IRtY~~~p~~rVtDhRtg~~~~~l~~vl~ 313 (339)
T PRK07342 237 QQERSQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDI---GWGHQIRSYVLQPYQLVKDLRTGVESTNPQDVLD 313 (339)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cccCCcCCccCCCCceeeeeccCceecChHHhhC
Confidence 9999999999999999999999999988877776544 4444 57789999999 7789999999997 89999999
Q ss_pred CCcHHHHHHHHHHH
Q 014874 386 GNIDNAVQSCAAME 399 (416)
Q Consensus 386 G~Ld~~I~a~~~~~ 399 (416)
|+||+||++++.+.
T Consensus 314 G~Ld~~I~a~l~~~ 327 (339)
T PRK07342 314 GDLNEFMEAALAHR 327 (339)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999875
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=4.9e-93 Score=701.55 Aligned_cols=299 Identities=32% Similarity=0.533 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCC
Q 014874 94 LDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAG 173 (416)
Q Consensus 94 L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~G 173 (416)
|+..++.|+.+....+++.++.+|++++ +|+||.++|.+|+..++.++++++ +.+|+++|+|.++|+|||+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~~-~d~e~~~~~~~e~~~l~~~~~~le----~~~lL~~~~D~~~a~leI~aG~G 76 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAESE-QDEDTALAVIADLDKYQAHVEKLE----FQRMFSGQMDGANAFVDIQAGAG 76 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCccccCCcEEEEECCCC
Confidence 6778888888888888888888887764 699999999999999999999998 33466899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeee
Q 014874 174 GDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTST 253 (416)
Q Consensus 174 G~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~ 253 (416)
|+||++||++|++||++||+++||++++++..+++.+||++|++.|+|++||++|++|+|||||||+|||++++|+||||
T Consensus 77 G~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsf 156 (313)
T PRK08787 77 GTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSF 156 (313)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeccCCc-cccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHH
Q 014874 254 ATVAIMPEADE-VEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYE 332 (416)
Q Consensus 254 a~V~vlP~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~ 332 (416)
|+|+|+|++++ +++.|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|+++|+++|++
T Consensus 157 asV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~ 236 (313)
T PRK08787 157 TSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYE 236 (313)
T ss_pred EEEEEecCcCcccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999975 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh--hhccccCCcCCcceeeecCCCcccccccccc-cCccccccCCcHHHHHHHHHHHH
Q 014874 333 IKVREQQEKIRTQR--LSQVGTGARAEKIRTYNYKDNRVTDHRLKMN-FELTSFLDGNIDNAVQSCAAMEQ 400 (416)
Q Consensus 333 ~~~~~~~~~~~~~r--~~~~~~~~Rse~IRtYnf~~~rVtDhR~~~~-~~l~~vl~G~Ld~~I~a~~~~~~ 400 (416)
++.+++.++....+ ++++ .||++||||||||+||||||||++ +||++||+|+||+||++++.+..
T Consensus 237 ~~~e~~~~~~~~~~~~k~~i---~~g~qIRtY~f~~~~V~DhRtg~~~~~l~~vldG~ld~fI~a~l~~~~ 304 (313)
T PRK08787 237 LEVQKRNAEKDALEATKSDI---GWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGL 304 (313)
T ss_pred HHHHHHHHHHHHHhhhhhhC---cccccccceeCCCCcceeeccCceEcChhHhhCCChHHHHHHHHHHHH
Confidence 99988888777765 5555 477899999999999999999997 89999999999999999998753
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-93 Score=710.50 Aligned_cols=347 Identities=45% Similarity=0.730 Sum_probs=322.7
Q ss_pred cchHHHhHHHHHHHHHH-------HHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014874 51 EPYLITKLESAAKTWKD-------LSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGN 123 (416)
Q Consensus 51 ~~~l~~~le~~~~~~~e-------Le~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~ 123 (416)
.+.+..+.+.+...+.+ .+..+++.++|+|+. ++..++..+.+...+..++.+++.|.++ ++
T Consensus 29 ~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~l~~~~~~l~~~~~~~~~~~~lk~l~~~-~e 97 (386)
T KOG2726|consen 29 SKYLVEKAESLEQELLELAEVRKVQEAASNDSDLWDDPA----------ELDEVLNALSDRMKLVRELKSLKSLIKE-GE 97 (386)
T ss_pred cchhHHHHHHHHHHHHHhhhhhhhHHHhhchhhhhhhhH----------HHHHHHHHHHHHHHHHHHhhhHHHHHhh-cc
Confidence 55566666666555544 456678888998865 4555566666666677777778899888 68
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Q 014874 124 DEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLIS 203 (416)
Q Consensus 124 D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~ 203 (416)
|++|.++|.+|+..+..++.++..+|+..+||++|+|.++|+|||+||+||+||++|+.+|++||.+||+++||++++++
T Consensus 98 ~e~~~~~a~~E~~~~~~~i~~~~~~l~~~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~ 177 (386)
T KOG2726|consen 98 DEDMDELAEEEAEEISKEIERSLHELELSLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLE 177 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccC--CccccccCCCCeEEEEeee
Q 014874 204 SSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEA--DEVEVVIDPKDIELTTARS 281 (416)
Q Consensus 204 ~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~--~~~~~~i~~~dl~i~~~Rs 281 (416)
..+++.+||+++++.|+|++||++|++|+|||||||+|++++.||+||||++|+|+|.+ +++++.|+++||+|+++||
T Consensus 178 ~~~~~~~Gi~~At~~i~G~~ayg~l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~ 257 (386)
T KOG2726|consen 178 KAPGESGGIKSATLEIEGESAYGYLKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRA 257 (386)
T ss_pred cCCcccccceeeeeEecccchhheeeccCcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred cCCCCccccccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCccee
Q 014874 282 GGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRT 361 (416)
Q Consensus 282 sGpGGQ~VNkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRt 361 (416)
|||||||||||+|||||+|+||||+|+||++||||+||+.||.+|+++|++...++...+.++.|+.|+++++|+++|||
T Consensus 258 ~G~GGQhvNktdsaVrl~HiPTGIvv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRT 337 (386)
T KOG2726|consen 258 SGPGGQHVNKTDSAVRLTHIPTGIVVECQEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRT 337 (386)
T ss_pred CCCCcccccccccceEEEeecCceEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccccccccc-cCccccccCCcHHHHHHHHHHHHHHHHHHHH
Q 014874 362 YNYKDNRVTDHRLKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEELA 408 (416)
Q Consensus 362 Ynf~~~rVtDhR~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~~~l~~~~ 408 (416)
|||+|+||||||++++ +++.+||+|+||+||++++.+.+++.+.++.
T Consensus 338 y~~~q~rv~D~r~~~~~~d~~~~l~G~Ld~li~~~~~~~~~~~~~e~~ 385 (386)
T KOG2726|consen 338 YNFKQDRVTDHRIGLESHDLESFLDGNLDELIEALLSLRREEDLAELL 385 (386)
T ss_pred cccCccchhhhhhcccccchHHHHhccHHHHHHHHHHHhhHHHHHHhh
Confidence 9999999999999986 8999999999999999999999999888764
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-72 Score=531.52 Aligned_cols=234 Identities=35% Similarity=0.613 Sum_probs=221.6
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcccccccceeEEEEcCCC
Q 014874 164 IMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQT 243 (416)
Q Consensus 164 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~ 243 (416)
|+|+|+||+||+|||+||.||++||++||+++||++++++..+|+.+|+||++|.|+|++||++|+.|.||||++|++|+
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeeeeEEEeeccCC-ccccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEcCcccHHHHHHHH
Q 014874 244 EAQGRVHTSTATVAIMPEAD-EVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRA 322 (416)
Q Consensus 244 ~~~gR~hTS~a~V~vlP~~~-~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A 322 (416)
++++|+||||++|.|+|+++ .+++.|+++||+|+|+|||||||||||||+|||||||+||||+|.||.+||||+|++.|
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a 160 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALA 160 (239)
T ss_pred CcCcccccceeeeeecCCCCcccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHHH
Confidence 99999999999999999995 56889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCC-cccccccccc-cCccccccCCcHHHHHHHHHH
Q 014874 323 LQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDN-RVTDHRLKMN-FELTSFLDGNIDNAVQSCAAM 398 (416)
Q Consensus 323 ~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~-rVtDhR~~~~-~~l~~vl~G~Ld~~I~a~~~~ 398 (416)
+.+|+.+|+....+++.++....+..+ ...+|+++||+|.|+|+ .|+|||+++. .|.+.+|+|++|.||++++.+
T Consensus 161 ~~~l~~kL~~~~~~~Rsqe~n~~~a~~-k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg~~~~~~~~~l~~ 237 (239)
T COG1186 161 RKMLKGKLYILAQEKRSQEKNRERALK-KLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDGDKDGFIKAYLKW 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHhccccCCCccccccccccceeeccHHHhhhhhHHHHHHhhhhc
Confidence 999999999999888887777666543 34678899999999975 5999999996 799999999999999998865
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=8.8e-65 Score=475.39 Aligned_cols=198 Identities=20% Similarity=0.272 Sum_probs=180.0
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccC-CCceEEEEEEeccchhcccccccceeEEEEcCC
Q 014874 164 IMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEK-GGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQ 242 (416)
Q Consensus 164 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~-~g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~ 242 (416)
++|||+||+||+||++||++||+||++||+++||++++++..+++. |||++|+|.|+|++||++|+.|.|+|++++.||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999986 579999999999999999976666666555555
Q ss_pred CccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEcCcccHHHHHHHH
Q 014874 243 TEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRA 322 (416)
Q Consensus 243 ~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A 322 (416)
+..+.++||||++|.|+|. +++|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+.|
T Consensus 81 ~r~~~~R~ts~~~V~v~~~----~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A 156 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA----SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLA 156 (200)
T ss_pred CCCCCCeeEEEEEEEEecC----ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHHHH
Confidence 5666677899999999984 456999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCC
Q 014874 323 LQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKD 366 (416)
Q Consensus 323 ~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~ 366 (416)
+++|+++|++++.+++ ++....|+.++.+++||++||||||+.
T Consensus 157 ~~~L~~~l~~~~~~~~-~~~~~~~r~~~~~~~Rg~~iRty~~~~ 199 (200)
T TIGR03072 157 TLLLAVRLADLQQEQA-AALRAERRTAHHQIERGNPVRVFKGEL 199 (200)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhccccccccCceEeeeCCc
Confidence 9999999999987665 556777888999999999999999863
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=1.4e-63 Score=467.21 Aligned_cols=195 Identities=18% Similarity=0.271 Sum_probs=175.9
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccC-CCceEEEEEEeccchhcccc-cccceeEEEEcC
Q 014874 164 IMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEK-GGFKTVVMEIKGNRVYSKLK-YESGVHRVQRVP 241 (416)
Q Consensus 164 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~-~g~ks~~~~i~G~~ay~~lk-~E~GvHrv~Rvp 241 (416)
++|||+||+||+||++||++||+||++||+++||++++++..+++. |||+||++.|+|++||++|+ ||+|+|||+|+|
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 7999999999999999999999999999999999999999999997 67999999999999999998 455555555655
Q ss_pred CCccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEcCcccHHHHHHH
Q 014874 242 QTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSR 321 (416)
Q Consensus 242 ~~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~ 321 (416)
+ ..+.++||||++|+|+|. ++.|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+.
T Consensus 82 ~-~~~~~R~~s~~~V~v~~~----~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~ 156 (200)
T PRK08179 82 Y-RPHHGRKNWFVGIGRFSA----DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRL 156 (200)
T ss_pred C-CCCCCceEEEEEEEEeCC----cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHHH
Confidence 5 455666789999999976 35789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeec
Q 014874 322 ALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNY 364 (416)
Q Consensus 322 A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf 364 (416)
|+++|+++|++++.+++ ++....++.++++++||++||||.-
T Consensus 157 A~~~L~~~L~~~~~~~~-~~~~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 157 ARLLIAWKLEQQQQEQS-AALKSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhccccccccCceEeeec
Confidence 99999999999987555 5556777889999999999999963
No 14
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=100.00 E-value=2.3e-36 Score=260.93 Aligned_cols=110 Identities=49% Similarity=0.686 Sum_probs=103.2
Q ss_pred ccccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 264 EVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIR 343 (416)
Q Consensus 264 ~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~ 343 (416)
..++.|+++||+++|+|||||||||||||+|+|+|+|.||||+|+|+++|||++|++.|+++|+++|.++..++......
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~ 83 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTR 83 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998777777777
Q ss_pred HhhhhccccCCcCCcceeeecCCCcccccc
Q 014874 344 TQRLSQVGTGARAEKIRTYNYKDNRVTDHR 373 (416)
Q Consensus 344 ~~r~~~~~~~~Rse~IRtYnf~~~rVtDhR 373 (416)
..++.+....+|+++||+|||++++|||||
T Consensus 84 ~~~~~~~~~~~~~~~iR~y~~~~~~vk~~R 113 (113)
T PF00472_consen 84 EIRKSQVKRLERKKKIRTYNFPRSRVKDHR 113 (113)
T ss_dssp TTTTTSCCCSSTTSEEEEEETTTTEEEETT
T ss_pred HHHHHHHhHHhhhcceecccCChhhcccCC
Confidence 888888888999999999999999999998
No 15
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=100.00 E-value=7.4e-33 Score=239.61 Aligned_cols=113 Identities=50% Similarity=0.833 Sum_probs=105.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCe
Q 014874 119 KENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWK 198 (416)
Q Consensus 119 ~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~ 198 (416)
..+++|+||+++|.+|+..+..+++.++.++...|+|++|+|.++|+|||+||+||+||++||++|++||++||+++||+
T Consensus 3 ~~~~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~ 82 (115)
T PF03462_consen 3 LEEEEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWK 82 (115)
T ss_dssp HCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCceEEEEEEeccchhcccccc
Q 014874 199 CTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYE 231 (416)
Q Consensus 199 ~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E 231 (416)
+++++.++++.+|+|+|++.|+|++||++||+|
T Consensus 83 ~~~l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 83 VEVLDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EEEEecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 999999999999999999999999999999997
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.84 E-value=2e-21 Score=173.47 Aligned_cols=70 Identities=41% Similarity=0.524 Sum_probs=64.5
Q ss_pred ccccCCCCeEEEEeeecCCCCccccccCccEEEEE------cC-----------------Cc-eEEEEcCcccHHHHHHH
Q 014874 266 EVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFH------KP-----------------TG-IRIFCTEERTQLQNKSR 321 (416)
Q Consensus 266 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H------~P-----------------tG-i~v~~~~~RSQ~~Nk~~ 321 (416)
++.|+.+||++.|+|||||||||||||+|+|+|+| +| .| |+|+||++|||++|++.
T Consensus 7 ~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~~ 86 (138)
T PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRED 86 (138)
T ss_pred cCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHHH
Confidence 56799999999999999999999999999999996 66 24 99999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014874 322 ALQLLRAKLYEIKV 335 (416)
Q Consensus 322 A~~~L~~kL~~~~~ 335 (416)
|+++|.++|.+...
T Consensus 87 al~kL~~~i~~~~~ 100 (138)
T PRK09256 87 ALERLVALIREALK 100 (138)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.6e-15 Score=136.13 Aligned_cols=71 Identities=31% Similarity=0.469 Sum_probs=63.6
Q ss_pred cccccCCCCeEEEEeeecCCCCccccccCccEEEEE-------cC------------------CceEEEEcCcccHHHHH
Q 014874 265 VEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFH-------KP------------------TGIRIFCTEERTQLQNK 319 (416)
Q Consensus 265 ~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H-------~P------------------tGi~v~~~~~RSQ~~Nk 319 (416)
.+-.|+.+-+.+.|.||||||||||||++|+|.|+. +| ..|++.++.+||||.|.
T Consensus 33 ~~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Ni 112 (172)
T KOG3429|consen 33 FKGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNI 112 (172)
T ss_pred cCCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccH
Confidence 455688899999999999999999999999999983 33 35999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014874 320 SRALQLLRAKLYEIKV 335 (416)
Q Consensus 320 ~~A~~~L~~kL~~~~~ 335 (416)
+.||++|++.|++.+.
T Consensus 113 aDcleKlr~~I~~~~~ 128 (172)
T KOG3429|consen 113 ADCLEKLRDIIRAAEQ 128 (172)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998754
No 18
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=89.79 E-value=1.1 Score=49.37 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=45.7
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNP--SEYQKLAQSMAELDEVV-STYRKFKDCEKQLEE 113 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~--~~~~kl~ke~a~L~~vv-~~~~~~~~~~~~i~e 113 (416)
.+...++.++++..+|+..|++|+++.|. ++..++.+++..++.-+ ..|.+|.++...+++
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888999999999999999988663 47888888888887544 455666666544433
No 19
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=85.07 E-value=2.7 Score=46.29 Aligned_cols=53 Identities=21% Similarity=0.388 Sum_probs=41.4
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHhHHHHH-HHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPS-EYQKLAQSMAELDEVV-STYRKFK 105 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~-~~~kl~ke~a~L~~vv-~~~~~~~ 105 (416)
.+...++.++++..+|++.|++|+++.|+. ++.++.+++..++..+ ..|.+|.
T Consensus 572 ~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 626 (635)
T PRK11147 572 QLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWE 626 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778889999999999999999987766 8899998888887543 3344443
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.13 E-value=26 Score=33.70 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.5
Q ss_pred ccchHHHhHHHHHHHHHHHHHHhcCC
Q 014874 50 AEPYLITKLESAAKTWKDLSVKLADP 75 (416)
Q Consensus 50 ~~~~l~~~le~~~~~~~eLe~~l~dp 75 (416)
..|.+...+..+++++++|..++.+.
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999888764
No 21
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=76.00 E-value=15 Score=40.43 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 014874 174 GDEAGIWAGDLVRMYQKYS 192 (416)
Q Consensus 174 G~Ea~~~a~~L~~mY~~~a 192 (416)
|.+...|+..++..|.+..
T Consensus 287 g~~i~~~~~~~~~~y~~~~ 305 (555)
T TIGR03545 287 GPEIRKYLQKFLKYYDQAE 305 (555)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 8899999999999998833
No 22
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.01 E-value=1.6e+02 Score=32.25 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014874 78 VSNPSEYQKLAQSMAELDEVVSTYR-KFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPS 156 (416)
Q Consensus 78 w~D~~~~~kl~ke~a~L~~vv~~~~-~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~ 156 (416)
-.||.+...+..+++.+..+...|. .+.++...+++++.=++.-++..+-.+.+.+++..+.+++.++..+|-..
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~---- 372 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI---- 372 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3599999999999999998888775 33344444444433333212333334445556666666555554443111
Q ss_pred CCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCe---EEE--eeeccc------cCCCceEEEEEEe
Q 014874 157 DPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWK---CTL--ISSSEA------EKGGFKTVVMEIK 220 (416)
Q Consensus 157 ~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~---~~v--~~~~~~------~~~g~ks~~~~i~ 220 (416)
=..+|..|......+...-|+. +.+ ...... ...|+..|.|.|+
T Consensus 373 --------------------R~~~a~~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~ 427 (563)
T TIGR00634 373 --------------------RRKAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFS 427 (563)
T ss_pred --------------------HHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCCCceEEEEEEe
Confidence 1245667777777777765553 332 221111 2346777777775
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.12 E-value=37 Score=32.08 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=79.4
Q ss_pred cCCCcc---ccccchhccccchHHHhHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014874 35 VFPSLS---FRTPKLICMAEPYLITKLESAAKTWKDLSVKLADPE-VVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQ 110 (416)
Q Consensus 35 ~~~~~~---~~~~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~-~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~ 110 (416)
.+|+++ ...+..-.+....+-+-|..+...----.+++...+ +|.=|..+.. +....+..+......++....+
T Consensus 10 ~~y~lKELEK~~pK~~gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~--~~~~~~~~l~~~~~~~~~~i~~ 87 (188)
T PF03962_consen 10 DFYTLKELEKLAPKEKGIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQ--KRQNKLEKLQKEIEELEKKIEE 87 (188)
T ss_pred CcccHHHHHHHcccccCCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 567777 233333334444555556665554333345666666 4766554433 2333444444433344434433
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--cc-cceeEEEEcCCCcHHHHHHHHHHHHH
Q 014874 111 LEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPL--DA-RNIMLEVRAGAGGDEAGIWAGDLVRM 187 (416)
Q Consensus 111 i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~~~~--D~-~~~~leI~aG~GG~Ea~~~a~~L~~m 187 (416)
+.+..+-.+....+.+-+....+++..++.++..+..+|.. +--.||. +. +..+ -.-=..|..|...++-+
T Consensus 88 l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~-~~~~Dp~~i~~~~~~~-----~~~~~~anrwTDNI~~l 161 (188)
T PF03962_consen 88 LEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEK-YSENDPEKIEKLKEEI-----KIAKEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH-----HHHHHHHHHHHhhHHHH
Confidence 33333333333345667788888999999999999988862 2223331 11 0000 00123566777777654
Q ss_pred HHHHHHh-CCC
Q 014874 188 YQKYSEQ-NSW 197 (416)
Q Consensus 188 Y~~~a~~-~g~ 197 (416)
..||.+ .|.
T Consensus 162 -~~~~~~k~~~ 171 (188)
T PF03962_consen 162 -KSYLKKKFGM 171 (188)
T ss_pred -HHHHHHhcCC
Confidence 455554 444
No 24
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.69 E-value=26 Score=40.65 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=41.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Q 014874 91 MAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAE----MIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 91 ~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~----~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
..+.+...+.-++|+....++.|..+|+-. |.||.+ -++.|+..+++++++++.+|+++
T Consensus 289 R~e~keaqe~ke~~k~emad~ad~iEmaTl---dKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 289 RKEAKEAQEAKERYKEEMADTADAIEMATL---DKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777778888888764 677754 35567788888899988887654
No 25
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.32 E-value=1e+02 Score=32.73 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014874 130 MIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.+.+++..+++++.++++++...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 77 ELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888777543
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.11 E-value=1.4e+02 Score=30.42 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=62.6
Q ss_pred chHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 014874 52 PYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK-FKDCEKQLEESRALAKENGNDEEMAEM 130 (416)
Q Consensus 52 ~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~-~~~~~~~i~el~eLl~~~~~D~em~~~ 130 (416)
|.+..+.+.+..++..|......++. .|+.+...+..+++.+...+...++ +.++..++..+..-+ +.
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~e~~~-~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i----------~~ 248 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVEEIES-CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI----------EE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Confidence 44555566666666666666555554 3667766666666666655553221 111122222211111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Q 014874 131 IASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLIS 203 (416)
Q Consensus 131 a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~ 203 (416)
..++...+..+|.++++.+...- |--.. =+..|-..|..+....||++.-++
T Consensus 249 ~~~~k~~l~~eI~e~~~~~~~~r-----------------~~t~~----Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 249 LEEQKQELLAEIAEAEKIREECR-----------------GWTRS----EVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----------------CCCHH----HHHHHHHHHHHHHHHHCcEEEEEe
Confidence 34444455555555543332111 11111 245788889999999999997765
No 27
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=65.78 E-value=81 Score=28.41 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHHHH
Q 014874 78 VSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGND-----------------EEMAEMIASEIKSLSN 140 (416)
Q Consensus 78 w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D-----------------~em~~~a~eEl~~l~~ 140 (416)
|-|+.+..+.++-.++...+-.-.+..+...+.|+++..=+...++| +.+.+++++.-+.+.+
T Consensus 16 ~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k 95 (131)
T KOG1760|consen 16 FEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEK 95 (131)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHH
Confidence 66777666666666665555554445555555555554333321222 3445666666666666
Q ss_pred HHHHHHHHH
Q 014874 141 ELIELEEKL 149 (416)
Q Consensus 141 ~l~~le~~l 149 (416)
+|+.++.++
T Consensus 96 ~i~~les~~ 104 (131)
T KOG1760|consen 96 EIEELESEL 104 (131)
T ss_pred HHHHHHHHH
Confidence 666666554
No 28
>PRK10869 recombination and repair protein; Provisional
Probab=64.80 E-value=1e+02 Score=33.79 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 79 SNPSEYQKLAQSMAELDEVVSTYR-KFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKL 149 (416)
Q Consensus 79 ~D~~~~~kl~ke~a~L~~vv~~~~-~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l 149 (416)
.||.+...+..++..|..+...|. .+.++....++++.=++.-++..+-.+.++.++..+.+++.++-.+|
T Consensus 293 ~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 293 LDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999988888888776 33333333333333332212333444445555555555555554443
No 29
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=57.73 E-value=29 Score=26.86 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEecc
Q 014874 185 VRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGN 222 (416)
Q Consensus 185 ~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~ 222 (416)
+......+.++||.++-+...+.+..|+..+++.+.|+
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 44455667899999999999998889999999999993
No 30
>PRK11546 zraP zinc resistance protein; Provisional
Probab=56.11 E-value=66 Score=29.48 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 58 LESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 58 le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
=+.+..+..+|..+++.|+ +|++++.++.+|++.|...+.
T Consensus 67 RqqL~aKr~ELnALl~~~~--pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 67 RQQLVSKRYEYNALLTANP--PDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 3455666788888898886 599999999999998877443
No 31
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=55.59 E-value=2.2e+02 Score=30.52 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=39.0
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCE 108 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~ 108 (416)
.+..+++.++.-+++|..-...-.+=..+.....+.+++..+..-+..+..|...+
T Consensus 217 ~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 217 RLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888777777777788999999999888888777666655433
No 32
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=55.25 E-value=85 Score=26.39 Aligned_cols=59 Identities=22% Similarity=0.403 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 87 LAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKV 151 (416)
Q Consensus 87 l~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~ 151 (416)
+.+|+..+++.+.. ...+++.+..=+...+-.+|=+..++.|+..+...+...|++|..
T Consensus 3 V~~eId~lEekl~~------cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQ------CRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 44566666655553 334455555555544456777888899999999999999998854
No 33
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=55.08 E-value=48 Score=33.95 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 63 KTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAK 119 (416)
Q Consensus 63 ~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~ 119 (416)
..+..|...+.+|+| +|+.+.+.++-.+.|-.+|.+.-.|-.....+.=.+.-+.
T Consensus 170 ~~~~~l~~~~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~ 224 (344)
T PF12777_consen 170 ATIKKLKKYLKNPDF--NPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLE 224 (344)
T ss_dssp HHHHHHHCTTTSTTS--SHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 346778888999997 8999999999999999999998888876654444444433
No 34
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.76 E-value=1.4e+02 Score=33.14 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=40.0
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDC 107 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~ 107 (416)
+...++.+++.-.+|+++++ ..=.+|.+-..+-+..+.|+.-+..|+.|...
T Consensus 233 i~~~ie~l~~~n~~l~e~i~--e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~ 284 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMIN--EREKDPGKEESLREKKARLQDDVNKFQAYVSQ 284 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56678888888888888887 34457777778888888899888888777543
No 35
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.37 E-value=2.2e+02 Score=26.93 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 122 GNDEEMAEMIASEIKSLSNELIELEEKLKV 151 (416)
Q Consensus 122 ~~D~em~~~a~eEl~~l~~~l~~le~~l~~ 151 (416)
..||+..+...+++..+...+....+.+..
T Consensus 131 ~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~ 160 (188)
T PF03962_consen 131 ENDPEKIEKLKEEIKIAKEAANRWTDNIFS 160 (188)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 369999999999888888888887766544
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.77 E-value=2.6e+02 Score=27.71 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHH
Q 014874 55 ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEV 97 (416)
Q Consensus 55 ~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~v 97 (416)
...+..+.++.+..+.+|+. ..|...+..|..++..++.-
T Consensus 65 e~ei~~~r~r~~~~e~kl~~---v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 65 ESEIQEIRERIKRAEEKLSA---VKDERELRALNIEIQIAKER 104 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHH
Confidence 44456666666666666622 35777777777666555443
No 37
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=49.65 E-value=70 Score=27.69 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeeecccc-CCCceE--EEEEEeccc
Q 014874 181 AGDLVRMYQKYSEQNSWKCTLISSSEAE-KGGFKT--VVMEIKGNR 223 (416)
Q Consensus 181 a~~L~~mY~~~a~~~g~~~~v~~~~~~~-~~g~ks--~~~~i~G~~ 223 (416)
...|+.-...+|...|..+.-++..+.. ..+|.. +.+.++|.+
T Consensus 52 ~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y 97 (144)
T PF04350_consen 52 IPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSY 97 (144)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEH
T ss_pred HHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeH
Confidence 3467888889999999998887765443 346665 555666655
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=49.57 E-value=3.2e+02 Score=32.71 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCCCCcc--cceeEEEEcC----------CCcHHHHHHHHHHHHH
Q 014874 124 DEEMAEMIASEIKSLSNELIELEEKLKV----LLLPSDPLDA--RNIMLEVRAG----------AGGDEAGIWAGDLVRM 187 (416)
Q Consensus 124 D~em~~~a~eEl~~l~~~l~~le~~l~~----~ll~~~~~D~--~~~~leI~aG----------~GG~Ea~~~a~~L~~m 187 (416)
|...++...+-...+...+..+-..|.. .|.+.+|.|. .++-|.++|. .||.=|--..+.||-+
T Consensus 1004 d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi 1083 (1163)
T COG1196 1004 DKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAI 1083 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHH
Confidence 5666666666677777777777655522 3444555554 3555555554 7999888887877766
Q ss_pred HHHHHHhCCCeEEEeee
Q 014874 188 YQKYSEQNSWKCTLISS 204 (416)
Q Consensus 188 Y~~~a~~~g~~~~v~~~ 204 (416)
+ ..+-..+-++|.
T Consensus 1084 ~----~~~PaPf~vLDE 1096 (1163)
T COG1196 1084 Q----KYRPAPFYVLDE 1096 (1163)
T ss_pred H----hhCCCCeeeecc
Confidence 5 344455666664
No 39
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.84 E-value=2.1e+02 Score=25.81 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=37.1
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKE 120 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~ 120 (416)
....+.+.++.++..|+.....- -..+..+.+....|+.-|+. +...+.+++..+..
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~-----E~EI~sL~~K~~~lE~eld~------~~~~l~~~k~~lee 67 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQK-----EQEITSLQKKNQQLEEELDK------LEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 35667777788888887776542 34667777777777776664 33455555555543
No 40
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=47.80 E-value=44 Score=27.25 Aligned_cols=43 Identities=2% Similarity=0.094 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcc
Q 014874 185 VRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSK 227 (416)
Q Consensus 185 ~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~ 227 (416)
+......+.++||.++-++..+.+..++..+++.+.++.+...
T Consensus 17 L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~q 59 (76)
T PRK11152 17 LERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDL 59 (76)
T ss_pred HHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHH
Confidence 4445567789999999999999888899999999977665443
No 41
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=47.25 E-value=52 Score=27.20 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 103 KFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEE 147 (416)
Q Consensus 103 ~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~ 147 (416)
.+.++..|++|++.|+... .-+-.++++..|+..++.+|..+..
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a-~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQA-KRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999864 4567888889999999999988864
No 42
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=46.51 E-value=43 Score=26.17 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.2
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCC
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVV 78 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w 78 (416)
.+...++.++..+..++..|++|+|.
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~ 33 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFV 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 46788999999999999999999984
No 43
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.96 E-value=2.6e+02 Score=28.61 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 014874 58 LESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK 103 (416)
Q Consensus 58 le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~ 103 (416)
+..++..+..|+.......+ +|..-.++.++++.|...+..++.
T Consensus 109 ~~~ler~i~~Le~~~~T~~L--~~e~E~~lvq~I~~L~k~le~~~k 152 (294)
T COG1340 109 IKSLEREIERLEKKQQTSVL--TPEEERELVQKIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655544333 566667777777777666665543
No 44
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=45.58 E-value=57 Score=26.65 Aligned_cols=39 Identities=5% Similarity=0.085 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccc
Q 014874 185 VRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNR 223 (416)
Q Consensus 185 ~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ 223 (416)
+......+.++||.++-+...+.+..|+..+++.+.|..
T Consensus 16 L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 16 LLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 455566778999999999999998899999999988765
No 45
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=45.41 E-value=3.7e+02 Score=28.92 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=43.2
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDC 107 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~ 107 (416)
.++.+++.++.-++.|..-...-.+=.-|.+...+.|++..+..-+...+.|.+.
T Consensus 221 ~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~ 275 (426)
T smart00806 221 SLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDI 275 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677788888888888888888888888888888888888887777766666543
No 46
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.31 E-value=4.4e+02 Score=28.42 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcC
Q 014874 130 MIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAG 171 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG 171 (416)
.+..++.++++++..++.+|. .+.+.+..+...+.|.|.+.
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~-~l~~~~~~~~~~v~v~l~~~ 189 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELN-ALLTGKSQRSHTVLVRLEAP 189 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhccCCccceEEEEEEEecc
Confidence 455677778888888887773 34444455556677777753
No 47
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=44.25 E-value=1.2e+02 Score=28.41 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCC--CCHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 56 TKLESAAKTWKDLSVKLADPEVV--SNPSE-YQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAK 119 (416)
Q Consensus 56 ~~le~~~~~~~eLe~~l~dp~~w--~D~~~-~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~ 119 (416)
..|+.+++|+.+||.++.-++-- +++.. +..+.+-...|...+...++++.+.+.++++...+.
T Consensus 5 ~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLD 71 (174)
T PF07426_consen 5 SALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYLD 71 (174)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcC
Confidence 45889999999999999533211 22333 344555566677777778888888888888888764
No 48
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=43.18 E-value=1.8e+02 Score=26.36 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCC
Q 014874 95 DEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLL--LPSDP 158 (416)
Q Consensus 95 ~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~l--l~~~~ 158 (416)
.++-..|..|....-.+.-+.-.++-. .|+|++.++..-++.++..++.+++-+...= +|.++
T Consensus 17 ~Ei~~Lw~~~~~~~~~~~~~~~f~~~~-~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip~P~~~ 81 (166)
T PF11553_consen 17 SEIGNLWNNYMANYMSICLLQYFLQVA-EDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIPVPPGF 81 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 345556666666665566666666654 6999999999999999999999998887654 44444
No 49
>PRK11637 AmiB activator; Provisional
Probab=43.12 E-value=3e+02 Score=28.93 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=11.4
Q ss_pred HHHhHHHHHHHHHHHHHHhc
Q 014874 54 LITKLESAAKTWKDLSVKLA 73 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~ 73 (416)
+...++.+++++++++..+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666555554
No 50
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.01 E-value=5.3e+02 Score=28.74 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014874 57 KLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK-FKDCEKQLEESRALAKENGNDEEMAEMIASEI 135 (416)
Q Consensus 57 ~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~-~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl 135 (416)
.+..+++-..+|...+.+-+| ||.+..++..++..|..+...|.. ..++..-.+.+++=+..-++..+-.+.++.++
T Consensus 274 a~~~l~ea~~el~~~~~~le~--Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~ 351 (557)
T COG0497 274 ALYELEEASEELRAYLDELEF--DPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEV 351 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444555556677777777776 999999999999999998887765 33333333322221111012222233445555
Q ss_pred HHHHHHHHHHHHHH
Q 014874 136 KSLSNELIELEEKL 149 (416)
Q Consensus 136 ~~l~~~l~~le~~l 149 (416)
..+..++.+.-..|
T Consensus 352 ~~l~~~~~~~A~~L 365 (557)
T COG0497 352 KKLKAELLEAAEAL 365 (557)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544433
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.71 E-value=3.6e+02 Score=26.73 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhC-CCeEEEe
Q 014874 182 GDLVRMYQKYSEQN-SWKCTLI 202 (416)
Q Consensus 182 ~~L~~mY~~~a~~~-g~~~~v~ 202 (416)
.+|+.-|.+....+ |.-+-.+
T Consensus 174 ~ell~~yeri~~~~kg~gvvpl 195 (239)
T COG1579 174 PELLSEYERIRKNKKGVGVVPL 195 (239)
T ss_pred HHHHHHHHHHHhcCCCceEEee
Confidence 46777777777655 6555443
No 52
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=40.36 E-value=2.2e+02 Score=23.71 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
+...|+.++..|........... +...+..+.+++ . +. +..++.+|+|+..-+.-.+.+|+-..+-..
T Consensus 10 v~~sl~~l~~~~~~~~~~~~~~~---~~~e~~~~~~eL---~---~~---l~~ie~~L~DL~~aV~ive~np~kF~l~~~ 77 (97)
T PF09177_consen 10 VQSSLDRLESLYRRWQRLRSDTS---SSEELKWLKREL---R---NA---LQSIEWDLEDLEEAVRIVEKNPSKFNLSEE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHCC----HHHHHHHHHHH---H---HH---HHHHHHHHHHHHHHHHHHHCCHHHHT-HHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC---CcHhHHHHHHHH---H---HH---HHHHHHHHHHHHHHHHHHHhCccccCCCHH
Confidence 45556666666666665555443 334444333332 2 22 233444444444444322357887777888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014874 134 EIKSLSNELIELEEKLK 150 (416)
Q Consensus 134 El~~l~~~l~~le~~l~ 150 (416)
|+..-..-+..+..++.
T Consensus 78 Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 78 EISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777777776653
No 53
>PRK03918 chromosome segregation protein; Provisional
Probab=39.92 E-value=3.4e+02 Score=30.86 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=5.7
Q ss_pred HHHHHHHHhHHHH
Q 014874 85 QKLAQSMAELDEV 97 (416)
Q Consensus 85 ~kl~ke~a~L~~v 97 (416)
..+..++.+|++.
T Consensus 588 ~~~~~~~~~l~~~ 600 (880)
T PRK03918 588 EELEERLKELEPF 600 (880)
T ss_pred HHHHHHHHHhhhh
Confidence 3444444444444
No 54
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=39.62 E-value=2.9e+02 Score=26.82 Aligned_cols=55 Identities=7% Similarity=0.121 Sum_probs=39.2
Q ss_pred HHHhHHHHHHHHHHHH----HHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLS----VKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCE 108 (416)
Q Consensus 54 l~~~le~~~~~~~eLe----~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~ 108 (416)
+.++|+....|+..+. +.+.-..+-.|...+..++.|++.|..+...|.......
T Consensus 50 ~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~m 108 (204)
T COG5491 50 ARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLAL 108 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665543 334444567899999999999999999999877765333
No 55
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.07 E-value=3.4e+02 Score=30.17 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST 100 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~ 100 (416)
+...++.++.++.+|+.++... ++++.+.++.+++..++.-+..
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~---~~~e~i~~l~e~l~~l~~~l~~ 439 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTI---PSEEQIAQLLEELGEAQNELFR 439 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHH
Confidence 5667888888999999998864 3667778887777777665543
No 56
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=38.21 E-value=2e+02 Score=31.59 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE
Q 014874 180 WAGDLVRMYQKYSEQNSWKCTL 201 (416)
Q Consensus 180 ~a~~L~~mY~~~a~~~g~~~~v 201 (416)
|+-.|+.+|+.||+..|..+..
T Consensus 438 ~~~~ly~~y~~w~e~~G~~~~~ 459 (517)
T COG3378 438 IVLELYEAYQEWCEANGYVVEL 459 (517)
T ss_pred hhHHHHHHHHHHHHhcCCcccc
Confidence 4478999999999999984433
No 57
>PLN02320 seryl-tRNA synthetase
Probab=37.69 E-value=4.8e+02 Score=28.65 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014874 130 MIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.+.+++..+++++.+++.++...
T Consensus 141 ~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 141 NLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776543
No 58
>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]
Probab=37.65 E-value=23 Score=33.97 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=63.2
Q ss_pred HHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCc
Q 014874 185 VRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADE 264 (416)
Q Consensus 185 ~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~ 264 (416)
++-|..-+.-+.=.+..|...+-. .=.=+|.+.+.-+.+.++|-||.|+|-| |+-+++..|..-|+|- +|++..
T Consensus 76 l~eYaltsAl~DsRF~PIsr~ELp-~L~CsvslL~nFE~i~d~lDWevG~HGI-rieF~~e~g~krsATy----LPeVa~ 149 (210)
T KOG3274|consen 76 LREYALTSALKDSRFPPISREELP-SLQCSVSLLTNFEDIFDYLDWEVGVHGI-RIEFTNETGTKRSATY----LPEVAA 149 (210)
T ss_pred HHHHHHHHHhhcccCCCCChhhcC-ceEEEEEeeccchhcccccceeeccceE-EEEEEcCCCcEeeeee----cccchh
Confidence 456666666666566666533322 1133677778888999999999999964 7888776666555543 555431
Q ss_pred -cccccCCCCeEEEEeeecCCCCccccccCccEEEEE
Q 014874 265 -VEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFH 300 (416)
Q Consensus 265 -~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H 300 (416)
.. .+..+---.-.|=+|=+|---+-....+++|-
T Consensus 150 EQg--Wd~~eTidsLirKaGY~g~It~~~r~~I~ltR 184 (210)
T KOG3274|consen 150 EQG--WDQIETIDSLIRKAGYKGPITEELRKSIKLTR 184 (210)
T ss_pred hcC--CcHHHHHHHHHHhcCCCCccCHHHHhheeeeE
Confidence 10 00000000124556666655556666777763
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.22 E-value=4.6e+02 Score=26.62 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 84 YQKLAQSMAELDEVVSTYRK-FKDCEKQLEESRALAKEN-GNDEEMAEMIASEIKSLSNELIELEE 147 (416)
Q Consensus 84 ~~kl~ke~a~L~~vv~~~~~-~~~~~~~i~el~eLl~~~-~~D~em~~~a~eEl~~l~~~l~~le~ 147 (416)
...+.+....+.+++..... +..+..++..++.+..+. ..|++-.+.+..++..+..++.....
T Consensus 165 ~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 165 YAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433 334566677777776532 35888778888888777777764433
No 60
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.57 E-value=1.8e+02 Score=28.28 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEc
Q 014874 103 KFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRA 170 (416)
Q Consensus 103 ~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~a 170 (416)
+++.++...+-+.+|++.+++=.|+. .++.+|..++.+|+.++.++.. +.+..+-..+-|.+..
T Consensus 140 rl~~l~~~~~rl~~ll~ka~~~~d~l-~ie~~L~~v~~eIe~~~~~~~~---l~~~v~~sti~i~l~~ 203 (262)
T PF14257_consen 140 RLKNLEAEEERLLELLEKAKTVEDLL-EIERELSRVRSEIEQLEGQLKY---LDDRVDYSTITISLYE 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHhhceEEEEEEEEe
Confidence 34444555555666665443223333 3566666677777766655422 1223344455555544
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=35.87 E-value=3.8e+02 Score=29.45 Aligned_cols=93 Identities=23% Similarity=0.417 Sum_probs=49.7
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
+...++.+.+++..+...+.+..+ -|..+..++..+..-++ ...++..++.+.+..-. +.| ..|.+
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~-----~yS~i~~~l~~~~~~l~------~ie~~q~~~~~~l~~L~-~dE--~~Ar~ 414 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQV-----PYSEIQEELEEIEEQLE------EIEEEQEEINESLQSLR-KDE--KEARE 414 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc-----CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HHH--HHHHH
Confidence 445566666666666666665432 23333333333322222 22222233333332110 111 35777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 014874 134 EIKSLSNELIELEEKLKVLLLPSDPLD 160 (416)
Q Consensus 134 El~~l~~~l~~le~~l~~~ll~~~~~D 160 (416)
.+..+...+......++..-||.=|.+
T Consensus 415 ~l~~~~~~l~~ikR~lek~nLPGlp~~ 441 (560)
T PF06160_consen 415 KLQKLKQKLREIKRRLEKSNLPGLPED 441 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 888888888888888888888877754
No 62
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=35.44 E-value=93 Score=26.07 Aligned_cols=40 Identities=5% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEe-ccch
Q 014874 185 VRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIK-GNRV 224 (416)
Q Consensus 185 ~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~-G~~a 224 (416)
+......+.++||.++-+...+++..|+...++.+. |+..
T Consensus 16 L~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~ 56 (84)
T PRK13562 16 LNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDT 56 (84)
T ss_pred HHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHH
Confidence 334445567899999999999999999999999997 7653
No 63
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.18 E-value=4.1e+02 Score=28.93 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014874 126 EMAEMIASEIKSLSNELIELEEKLKVLLL 154 (416)
Q Consensus 126 em~~~a~eEl~~l~~~l~~le~~l~~~ll 154 (416)
++.+--.+.+....+++.+|+++|..+++
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 44444555566677777777777755554
No 64
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=34.81 E-value=1.8e+02 Score=29.92 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
|-..+..++..|++|...|.|-+ -.|+.|+-.++ .++.+-|..-++..++|+.|...+ ..|.++
T Consensus 180 ~d~S~k~ik~~F~~l~~cL~dRE--------vaLl~EmdkVK--~EAmeiL~aRqkkAeeLkrltd~A------~~MsE~ 243 (302)
T PF07139_consen 180 MDSSIKKIKQTFAELQSCLMDRE--------VALLAEMDKVK--AEAMEILDARQKKAEELKRLTDRA------SQMSEE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH------hhcCHH
Confidence 44445566666666666665421 12333332222 223333344445555555554321 246666
Q ss_pred HHHHHHHHHHHHH
Q 014874 134 EIKSLSNELIELE 146 (416)
Q Consensus 134 El~~l~~~l~~le 146 (416)
++.+|.++|..+.
T Consensus 244 Ql~ELRadIK~fv 256 (302)
T PF07139_consen 244 QLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776653
No 65
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=34.76 E-value=93 Score=28.79 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 014874 131 IASEIKSLSNELIELEEKLKVLLL 154 (416)
Q Consensus 131 a~eEl~~l~~~l~~le~~l~~~ll 154 (416)
++++...++.+|..|+..|...-+
T Consensus 62 ak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 62 RRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHccCEE
Confidence 777888888889999888866544
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.89 E-value=5.3e+02 Score=26.37 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEee
Q 014874 181 AGDLVRMYQKYSEQNSWKCTLIS 203 (416)
Q Consensus 181 a~~L~~mY~~~a~~~g~~~~v~~ 203 (416)
+..|..-|..+=...||++.-++
T Consensus 273 i~~Lk~~~~~Le~l~g~~~~~~~ 295 (312)
T smart00787 273 IEKLKEQLKLLQSLTGWKITKLS 295 (312)
T ss_pred HHHHHHHHHHHHHHhCCeeEecc
Confidence 34677888888889999986663
No 67
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=33.62 E-value=1.2e+02 Score=27.35 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhCCC-eEEEeeeccccCCCceEEEEEEe
Q 014874 171 GAGGDEAGIWAGDLVRMYQKYSEQNSW-KCTLISSSEAEKGGFKTVVMEIK 220 (416)
Q Consensus 171 G~GG~Ea~~~a~~L~~mY~~~a~~~g~-~~~v~~~~~~~~~g~ks~~~~i~ 220 (416)
|.. +++..+...++..|..+...-|+ .+.+.....++.+++.+.+..|+
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e 167 (173)
T PF00587_consen 118 CTP-EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIE 167 (173)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEE
T ss_pred eCC-cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHH
Confidence 444 88999999999999999999999 99999999988877776666554
No 68
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.10 E-value=3.1e+02 Score=23.44 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=42.8
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALA 118 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl 118 (416)
+..+++....|+..+|..+.+ -++.+...++..++++++.-+.... ...+.++..-+|+
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~---LPt~~dv~~L~l~l~el~G~~~~l~---~~l~~v~~~~~lL 98 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEH---LPTRDDVHDLQLELAELRGELKELS---ARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHH
Confidence 566777789999999999976 3688889999888888888777433 3444444444444
No 69
>smart00150 SPEC Spectrin repeats.
Probab=32.60 E-value=2.3e+02 Score=21.84 Aligned_cols=49 Identities=8% Similarity=0.111 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 014874 55 ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK 103 (416)
Q Consensus 55 ~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~ 103 (416)
...++.+..-+.+.+..+.+.++-.|+..+..+.+++..+..-+.....
T Consensus 4 ~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~ 52 (101)
T smart00150 4 LRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEE 52 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456666666777777777777668999999999999888887775443
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.55 E-value=1.6e+02 Score=36.53 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKEN----GNDEEMAE 129 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~----~~D~em~~ 129 (416)
+...++.++.++..++..+.. -..+...+..++..+..-+. .|......++.+++++..+ ++=.++.+
T Consensus 374 leeeleeleeEleelEeeLee-----LqeqLaelqqel~elQ~el~---q~qq~i~~Le~~~~~~~~~~~SdEeLe~~Le 445 (1486)
T PRK04863 374 ADEQQEENEARAEAAEEEVDE-----LKSQLADYQQALDVQQTRAI---QYQQAVQALERAKQLCGLPDLTADNAEDWLE 445 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc-cceeEEEEcCCCcHHHHHHHHHHHHHHHHH
Q 014874 130 MIASEIKSLSNELIELEEKLKVLLLPSDPLDA-RNIMLEVRAGAGGDEAGIWAGDLVRMYQKY 191 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~-~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~ 191 (416)
...+.+...+.++..++.++...---...+.. .+.++-+....-+.+|..||..+++-|..+
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~ 508 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ 508 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHH
No 71
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.40 E-value=2.1e+02 Score=30.23 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 014874 64 TWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELI 143 (416)
Q Consensus 64 ~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~ 143 (416)
.+++||++|.+-|.- -..-..+|..-...+-++--.|.+|......| +++-+ .+-.|-.-+++..+-+|..+|.
T Consensus 9 ~LeeLe~kLa~~d~~-Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I---e~~~~--~s~qeKFl~IR~KlleL~~~lQ 82 (379)
T PF11593_consen 9 KLEELEEKLASNDNS-KDSVMDKISEAQDSILPLRLQFNEFIQTMANI---EEMNN--KSPQEKFLLIRSKLLELYNKLQ 82 (379)
T ss_pred cHHHHHHHHhcCCch-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---hcccc--cCHHHHHHHHHHHHHHHHHHHH
Confidence 467777777765431 11223344444555556666666665555444 23321 1345677788888899999999
Q ss_pred HHHHHHHh
Q 014874 144 ELEEKLKV 151 (416)
Q Consensus 144 ~le~~l~~ 151 (416)
++..+++.
T Consensus 83 ~lS~df~~ 90 (379)
T PF11593_consen 83 ELSSDFQK 90 (379)
T ss_pred HHHHHHHH
Confidence 98877644
No 72
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=32.29 E-value=1e+02 Score=23.55 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=43.0
Q ss_pred chhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 45 KLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 45 ~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
++..|....+...|..+++++-.|.-+.+-..+ .||.+.+.+-+.++++.-++.
T Consensus 3 elr~ls~~eL~~~l~elk~eL~~Lr~q~~~~~l-~n~~~ir~~Rr~IARi~Tvl~ 56 (58)
T PF00831_consen 3 ELRELSDEELQEKLEELKKELFNLRFQKATGQL-ENPHRIREIRRDIARILTVLR 56 (58)
T ss_dssp HHCHSHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHh
Confidence 344566667888999999999998877766555 899999999999998877654
No 73
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=32.14 E-value=2.2e+02 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=12.0
Q ss_pred hHHHhHHHHHHHHH-HHHHHhcCCCC
Q 014874 53 YLITKLESAAKTWK-DLSVKLADPEV 77 (416)
Q Consensus 53 ~l~~~le~~~~~~~-eLe~~l~dp~~ 77 (416)
.+..+++.+.++++ +++..+..+++
T Consensus 601 ~lkeki~~~~~Ei~~eie~v~~S~gL 626 (762)
T PLN03229 601 DLKEKVEKMKKEIELELAGVLKSMGL 626 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 34445555555443 45555554443
No 74
>PRK03918 chromosome segregation protein; Provisional
Probab=31.78 E-value=4.4e+02 Score=29.98 Aligned_cols=9 Identities=44% Similarity=0.674 Sum_probs=3.2
Q ss_pred HHhHHHHHH
Q 014874 91 MAELDEVVS 99 (416)
Q Consensus 91 ~a~L~~vv~ 99 (416)
+..|.....
T Consensus 275 l~~l~~~~~ 283 (880)
T PRK03918 275 IEELEEKVK 283 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 75
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.67 E-value=2.7e+02 Score=29.50 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014874 130 MIASEIKSLSNELIELEEKLKVLLLP 155 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ll~ 155 (416)
.+++++..+++++.++-..|-..+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 84 ALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 45667777777777766555444433
No 76
>PLN02678 seryl-tRNA synthetase
Probab=31.45 E-value=6.9e+02 Score=26.95 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014874 130 MIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.+.+++..++.++.+++.++...
T Consensus 82 ~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 82 ELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888887777543
No 77
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.14 E-value=1.6e+02 Score=28.74 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=33.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||-+|-||..+..+.+.+++ .|.+ -||+-++...+-.+.+.++|+.+..++...
T Consensus 110 ~dPH~Wldp~~~~~~a~~I~~----------------------~L~~---~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~ 164 (266)
T cd01018 110 YDPHIWLSPANAKIMAENIYE----------------------ALAE---LDPQNATYYQANLDALLAELDALDSEIRTI 164 (266)
T ss_pred CCCccCcCHHHHHHHHHHHHH----------------------HHHH---hCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999998776554431 1111 245555555555566666666666666554
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 165 ~ 165 (266)
T cd01018 165 L 165 (266)
T ss_pred H
Confidence 4
No 78
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=30.43 E-value=1.3e+02 Score=35.48 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=32.2
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
.+.+.++.++++++.++.+|++|+|-.. .-...+.++...|.....
T Consensus 933 rL~K~l~kl~~ei~~~~~kL~N~~F~~k-Ap~~vve~e~~kl~~~~~ 978 (995)
T PTZ00419 933 KLEKKLAKLQKSLESYLKKISIPNYEDK-VPEDVRKLNDEKIDELNE 978 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhc-CCHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999998532 222334455555554444
No 79
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.40 E-value=2.6e+02 Score=25.65 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=28.7
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAEL 94 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L 94 (416)
....+...+++++.+|-+++..-+-=|+-.++.|+.+++..+
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl 78 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKL 78 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 356778889999999999988765555666666655544443
No 80
>PRK11637 AmiB activator; Provisional
Probab=30.03 E-value=5.1e+02 Score=27.15 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 014874 59 ESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST-YRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKS 137 (416)
Q Consensus 59 e~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~-~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~ 137 (416)
+..++++++++..+.. -.++...+.++++.+..-++. -.++..+..+|.++..-+.. .+.++ +.+..++..
T Consensus 43 ~~~~~~l~~l~~qi~~-----~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~--~~~ei-~~l~~eI~~ 114 (428)
T PRK11637 43 SDNRDQLKSIQQDIAA-----KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQ--LNKQI-DELNASIAK 114 (428)
T ss_pred hhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHH
Confidence 5677777777777753 233344344444443333222 12233333333333333322 11222 234555666
Q ss_pred HHHHHHHHHHHHH
Q 014874 138 LSNELIELEEKLK 150 (416)
Q Consensus 138 l~~~l~~le~~l~ 150 (416)
++.+++..++.+.
T Consensus 115 ~q~~l~~~~~~l~ 127 (428)
T PRK11637 115 LEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555553
No 81
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=29.63 E-value=56 Score=34.28 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEeeecccc-CCCceEEEEEEeccc------hhcccccccceeEEEEcCCCccCC
Q 014874 175 DEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAE-KGGFKTVVMEIKGNR------VYSKLKYESGVHRVQRVPQTEAQG 247 (416)
Q Consensus 175 ~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~-~~g~ks~~~~i~G~~------ay~~lk~E~GvHrv~Rvp~~~~~g 247 (416)
..|..++..+-++...|.....++|++-+...+. ..|=+ ++.|.-.. +.+.+.+|.|||- .|.-+|
T Consensus 134 ~~A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~~--~l~i~~~a~fs~~~l~~L~~HEigvH~-----~T~~Ng 206 (366)
T TIGR02421 134 VSATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSGD--KLKLNSDAMFSERDLEALIHHEIGVHL-----LTTLNG 206 (366)
T ss_pred cCHHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccCC--eEEECCCCCcCHHHHHHHHHHhHHhhh-----hhcccc
Confidence 4566777777777777777665666654433222 12222 45565432 4557789999993 244455
Q ss_pred ceee
Q 014874 248 RVHT 251 (416)
Q Consensus 248 R~hT 251 (416)
+.|.
T Consensus 207 ~~Qp 210 (366)
T TIGR02421 207 RAQP 210 (366)
T ss_pred ccCc
Confidence 5444
No 82
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.24 E-value=3.8e+02 Score=26.05 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 56 TKLESAAKTWKDLSVKLADPEVV--SNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 56 ~~le~~~~~~~eLe~~l~dp~~w--~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
.+++.....+.++- .+.+.++. |=..++..+..+++.++...+.+.++.+..+ .+.++++-+ .+ ...++.
T Consensus 105 ~~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~---~~~d~l~ie---~~-L~~v~~ 176 (262)
T PF14257_consen 105 DKFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK---TVEDLLEIE---RE-LSRVRS 176 (262)
T ss_pred HHHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHH---HH-HHHHHH
Confidence 34555555555554 33333332 2246777788888888888886666555444 444555421 12 235888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014874 134 EIKSLSNELIELEEKLKV 151 (416)
Q Consensus 134 El~~l~~~l~~le~~l~~ 151 (416)
|++.++.++..+.+....
T Consensus 177 eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 177 EIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHhhce
Confidence 999999999999988754
No 83
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=28.97 E-value=1.2e+02 Score=32.72 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=27.2
Q ss_pred cceeEEEEcCCCcHHHHH-HHHH----HHHHHHHHHHhCCCeEEEeeeccc
Q 014874 162 RNIMLEVRAGAGGDEAGI-WAGD----LVRMYQKYSEQNSWKCTLISSSEA 207 (416)
Q Consensus 162 ~~~~leI~aG~GG~Ea~~-~a~~----L~~mY~~~a~~~g~~~~v~~~~~~ 207 (416)
..|+.=..||+||=+|.. ++.+ +-.....|. +-.|..++..+.
T Consensus 395 ~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~---~~~V~pL~v~~~ 442 (454)
T TIGR01219 395 EGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWS---SHNVLALDVREA 442 (454)
T ss_pred CCeeEeecCCCCccceEEEEecCChHHHHHHHHHHh---hCCEEEEecccc
Confidence 577788899999988764 2222 556666672 234555655544
No 84
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=28.94 E-value=8.1e+02 Score=26.91 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHHHHHHHH-hcCC---CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVK-LADP---EVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRA 116 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~-l~dp---~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~e 116 (416)
++.+.+.+..++.++-+. +.++ ++.+..++...+.++++....++...+.+.+..+.+.+++.
T Consensus 51 L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~ 117 (593)
T PF06248_consen 51 LIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEE 117 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666333222 3333 23345566777778887777777777666665555554443
No 85
>PRK06851 hypothetical protein; Provisional
Probab=28.91 E-value=6.7e+02 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=23.4
Q ss_pred eEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeec
Q 014874 165 MLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSS 205 (416)
Q Consensus 165 ~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~ 205 (416)
+|.=.||+|-. -|+..+...+..+|+.+++.-+.
T Consensus 218 ~i~G~pG~GKs-------tl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 218 FLKGRPGTGKS-------TMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred EEeCCCCCcHH-------HHHHHHHHHHHhCCCeEEEEeCC
Confidence 33334566644 45666777888999999998754
No 86
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.79 E-value=4.3e+02 Score=28.65 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014874 81 PSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 81 ~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~l 153 (416)
..++-.+.++.+.|...+.. .++++.+....-.++..+. .+...+..+.++...+.++..++++++...+
T Consensus 47 ~~~ldeln~~~n~l~k~i~~-~k~kkke~~~~l~~~~~~~--~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~ 116 (455)
T KOG2509|consen 47 RFELDELNKEKNKLNKEIGD-LKLKKKEDIGQLEESKAKN--TEGAERKLLKEEAVELEEDESKLEDELYEVL 116 (455)
T ss_pred hHHHHHHHHHHHHhhhHhhH-HHHhhcchhhHHHHhhhHh--hhhhhhhhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44556677777777777765 4444322222222222222 2234556677778888888888887775543
No 87
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.74 E-value=2.5e+02 Score=30.61 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHH-HHHHHHHHHHHHHHHHHHH
Q 014874 80 NPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKEN---GNDEE-MAEMIASEIKSLSNELIEL 145 (416)
Q Consensus 80 D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~---~~D~e-m~~~a~eEl~~l~~~l~~l 145 (416)
|..+..|+.|+.+.|+++.+..+.+. ++..+...+ ..|.| +...+.++.+.+..-+-.+
T Consensus 204 ee~k~eKiskR~~aleev~n~vk~l~-------em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfrl 266 (594)
T KOG1086|consen 204 EEHKLEKISKRVKALEEVNNNVKLLE-------EMLLDYSQEGNASPDNELLLQEVYNRCEQLRPTLFRL 266 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777777777766666444332 222222211 23445 6666777766665555444
No 88
>PLN02943 aminoacyl-tRNA ligase
Probab=28.61 E-value=1.3e+02 Score=35.39 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=31.8
Q ss_pred chHHHhHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhHHHHHH
Q 014874 52 PYLITKLESAAKTWKDLSVKLADPEVVS-NPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 52 ~~l~~~le~~~~~~~eLe~~l~dp~~w~-D~~~~~kl~ke~a~L~~vv~ 99 (416)
..+.++++.++++++.++.+|++|+|-. -|++ .+.++...|+....
T Consensus 892 ~rL~K~l~klekei~~~~~kLsN~~F~~KAP~e--vv~~e~~kl~~~~~ 938 (958)
T PLN02943 892 ERLSKRLSKMQTEYDALAARLSSPKFVEKAPED--VVRGVREKAAEAEE 938 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHH--HHHHHHHHHHHHHH
Confidence 3578889999999999999999999852 2222 33345555554444
No 89
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.42 E-value=6.9e+02 Score=25.99 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcC
Q 014874 124 DEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAG 171 (416)
Q Consensus 124 D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG 171 (416)
+++..+.+++++.+....+.+.| ..+|+. ++.+|.+.=|
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmE-----a~LPkk----NGlyL~liLG 104 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDME-----AFLPKK----NGLYLRLILG 104 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH-----hhCCCC----CCcccceecc
Confidence 55666667777777777777665 234543 4555555545
No 90
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=28.39 E-value=5.1e+02 Score=27.29 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=10.6
Q ss_pred HHHhHHHHHHHHHHHHHHh
Q 014874 54 LITKLESAAKTWKDLSVKL 72 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l 72 (416)
+...++.+.+++..|-..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (367)
T PRK00578 5 ISERLKDLDEKLENIRGVL 23 (367)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3455666666666554444
No 91
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.36 E-value=5.8e+02 Score=25.05 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=42.5
Q ss_pred HHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCC
Q 014874 87 LAQSMAELD-EVVSTYRKFKDCEKQLEESRALAKENGN----DEEMAEMIASEIKSLSNELIELEEK-LKVLLLPS 156 (416)
Q Consensus 87 l~ke~a~L~-~vv~~~~~~~~~~~~i~el~eLl~~~~~----D~em~~~a~eEl~~l~~~l~~le~~-l~~~ll~~ 156 (416)
+.++...|. +-....+.++...+||..++.+++.... -.+......+|+..++.+++++..+ +-+.-||.
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~ 112 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPS 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 334444332 2344445666777888888888864321 1234456677888899999988777 54444443
No 92
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=28.36 E-value=2.3e+02 Score=28.56 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014874 74 DPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 74 dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~l 153 (416)
||-+|-||..++.+.+.+++ .|.+ -||+-.+...+-.+.+..+|+.+..++...+
T Consensus 144 dPHiWldp~~~~~~a~~I~~----------------------~L~~---~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l 198 (311)
T PRK09545 144 NMHIWLSPEIARATAVAIHD----------------------KLVE---LMPQSKAKLDANLKDFEAQLAQTDKQIGNQL 198 (311)
T ss_pred CCcccCCHHHHHHHHHHHHH----------------------HHHH---hChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999998875544321 1111 2555555555556666666666666665544
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=1.5e+02 Score=33.25 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=26.6
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQK 86 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~k 86 (416)
.+.....++..+..+|..+..-.+|.|-..++.
T Consensus 350 A~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika 382 (652)
T COG2433 350 AYKAYLAYKPKLEKVERKLPELGIWKDVERIKA 382 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 456667788899999999999989999887653
No 94
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.76 E-value=4.6e+02 Score=23.80 Aligned_cols=64 Identities=38% Similarity=0.521 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 80 NPSEYQKLAQSMAELDEVVSTYRKFKDCEKQL-EESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKV 151 (416)
Q Consensus 80 D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i-~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~ 151 (416)
+++....+..++..|..-+...+.- .+.+ .++..|.+.. .+.+| ...+..++.++..++.+|..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~---~k~l~~eL~~L~~~~-t~~el----~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKE---VKSLEAELASLSSEP-TNEEL----REEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCC-CHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 5677778877877777666644332 2221 3344444332 33443 44555566666666666543
No 95
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=27.62 E-value=3.8e+02 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.2
Q ss_pred hHHHhHHHHHHHHHHHHHHhc
Q 014874 53 YLITKLESAAKTWKDLSVKLA 73 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~ 73 (416)
.....++.+..+++++|..+.
T Consensus 122 ~~~~~l~~l~~~l~~le~~~~ 142 (292)
T PF01544_consen 122 DYFEVLEELEDELDELEDELD 142 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 456678889999999999993
No 96
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=27.48 E-value=96 Score=28.61 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=29.8
Q ss_pred EeeecCCCCccccccCccEEEEEcCCceEEEEcCcc
Q 014874 278 TARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEER 313 (416)
Q Consensus 278 ~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~~~R 313 (416)
..-..|.++..+-..+|.|||.|..||..+.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 123 EKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp EEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred ecccCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 334457788889889999999999999999888755
No 97
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.25 E-value=2.2e+02 Score=26.57 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=33.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..+..+.+.+++ .|.+ .||+-.+...+-.+.+.++|+++.+++...
T Consensus 106 ~dPH~Wldp~~~~~~a~~I~~----------------------~L~~---~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~ 160 (203)
T cd01145 106 GNPHVWLDPNNAPALAKALAD----------------------ALIE---LDPSEQEEYKENLRVFLAKLNKLLREWERQ 160 (203)
T ss_pred CCcCeecCHHHHHHHHHHHHH----------------------HHHH---hCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999988765444321 1111 244444555555566666677776666544
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 161 l 161 (203)
T cd01145 161 F 161 (203)
T ss_pred h
Confidence 3
No 98
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=26.21 E-value=3.7e+02 Score=24.11 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 014874 95 DEVVSTYRKFKDCEKQLEESRALAKENGND-EEMAEMIASEIKSLSNELIELE--EKLKV 151 (416)
Q Consensus 95 ~~vv~~~~~~~~~~~~i~el~eLl~~~~~D-~em~~~a~eEl~~l~~~l~~le--~~l~~ 151 (416)
.+|+..+..++++..+|..+.+-++..+.| .-|...|..=+.++..++++-+ ++|+.
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle 65 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLE 65 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 344455556666665555554444432222 2344445555666777776653 44433
No 99
>PRK06034 hypothetical protein; Provisional
Probab=25.99 E-value=7.1e+02 Score=25.29 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=57.7
Q ss_pred EcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEE-eccch-hcccccccceeEEEEcCCCccC
Q 014874 169 RAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEI-KGNRV-YSKLKYESGVHRVQRVPQTEAQ 246 (416)
Q Consensus 169 ~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i-~G~~a-y~~lk~E~GvHrv~Rvp~~~~~ 246 (416)
-.|.+|.-+...|...|.--..+.....+.- ++ ..-+.|...-.++-| .+..+ +..|..|++.+=|.|.|..+..
T Consensus 100 ~lG~~gs~s~~AA~~~FG~s~~~~~~~s~~d-Vf--~AV~~g~adyGVVPI~~~~~~WW~~L~~~~~~~iiarlP~~~~~ 176 (279)
T PRK06034 100 DGSGGEAAMRDSARFHFGFTVPYVPHFSAQA-VV--EAVARSKGDLGLVSLTSSDTPWWGRLEAEGAPKIIARLPFVERA 176 (279)
T ss_pred EeCCccHHHHHHHHHHhccccCCccCCCHHH-HH--HHHHcCCCCEEEEECCCCCCcHHHHhccCCCCeEEEeCCCCCCC
Confidence 4588888777766655521100000000000 00 011123334446666 33333 6677778888878899999988
Q ss_pred CceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCC
Q 014874 247 GRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAG 285 (416)
Q Consensus 247 gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpG 285 (416)
++.-.--+.|.--|..+-...++.+-+.+++++.+.+|+
T Consensus 177 ~~pa~~p~~v~~~~~~~~~~~ev~~~~~~~~~w~~~~~~ 215 (279)
T PRK06034 177 DHPAALPVFVVSRPADDAAVTEVETWSVRVSGWVADAAR 215 (279)
T ss_pred CCCCCCceeeeecccccccccceeeeecccccccccccc
Confidence 776544444433333322233455556665555544443
No 100
>PRK09039 hypothetical protein; Validated
Probab=25.99 E-value=7.4e+02 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 014874 81 PSEYQKLAQSMAELDEVVS-TYRKFKDCEKQLEESRAL 117 (416)
Q Consensus 81 ~~~~~kl~ke~a~L~~vv~-~~~~~~~~~~~i~el~eL 117 (416)
..++..+..+++..+.... .+.++..+.++|+.++.-
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555433 444444455555555443
No 101
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=25.84 E-value=5.4e+02 Score=27.10 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=10.2
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVK 71 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~ 71 (416)
+..+++.+..+++.|-..
T Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (364)
T TIGR00020 5 VNNRIEDLTSRLDTVRGS 22 (364)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345566666666555433
No 102
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.66 E-value=8.2e+02 Score=25.90 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014874 130 MIASEIKSLSNELIELEEKLKV 151 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~ 151 (416)
.+.+++..+++++.++++++..
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 80 ELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777777654
No 103
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.41 E-value=5.3e+02 Score=23.65 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014874 74 DPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 74 dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~l 153 (416)
....|--++-+.+|..|+..|... .-+..+.+.++.+.=..+ +.. -...|+++...++.++..|+..|...-
T Consensus 3 ~~~~~lT~eg~~~L~~EL~~L~~~------r~~i~~~i~~Ar~~GDls-ENa-ey~aak~~q~~~e~RI~~L~~~L~~A~ 74 (158)
T PRK05892 3 VKSKGLAPAARDHLEAELARLRAR------RDRLAVEVNDRGMIGDHG-DQA-EAIQRADELARLDDRINELDRRLRTGP 74 (158)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHhCCCcc-hhh-hHHHHHHHHHHHHHHHHHHHHHHHhCE
Confidence 345677888889998888888642 122334444544442111 111 234678888889999999998886544
Q ss_pred CC
Q 014874 154 LP 155 (416)
Q Consensus 154 l~ 155 (416)
+.
T Consensus 75 ii 76 (158)
T PRK05892 75 TP 76 (158)
T ss_pred Ee
Confidence 43
No 104
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.30 E-value=7.2e+02 Score=29.89 Aligned_cols=102 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred cccchhccccch------------HHHhHHHHHHHHHHHHHHhcCCCCCCCHH------------HHHHHHHHHHhHHHH
Q 014874 42 RTPKLICMAEPY------------LITKLESAAKTWKDLSVKLADPEVVSNPS------------EYQKLAQSMAELDEV 97 (416)
Q Consensus 42 ~~~~~~~~~~~~------------l~~~le~~~~~~~eLe~~l~dp~~w~D~~------------~~~kl~ke~a~L~~v 97 (416)
+++.++.|++.+ ...-++..+.++.++...|... =+|. +++++.+++-+|..+
T Consensus 157 Kp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~ee---I~P~l~KLR~Ers~~lE~q~~~~dle~l~R~ 233 (1174)
T KOG0933|consen 157 KPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREE---ILPRLEKLREERSQYLEYQKINRDLERLSRI 233 (1174)
T ss_pred CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 98 VSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLK 150 (416)
Q Consensus 98 v~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~ 150 (416)
.-+|+=|+....--.-+.++ +++.+-...+.+++.....+++.++++++
T Consensus 234 ~ia~eY~~~~~~~~~~~~~i----~e~~~~i~~l~e~~~k~~~ei~~le~~ik 282 (1174)
T KOG0933|consen 234 CIAYEYLQAEEKRKNSAHEI----EEMKDKIAKLDESLGKTDKEIESLEKEIK 282 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 105
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.19 E-value=1e+02 Score=23.83 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=23.2
Q ss_pred hCCCeEEEeeeccccCCCceEEEEEEeccchhcccccccceeEEEE
Q 014874 194 QNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQR 239 (416)
Q Consensus 194 ~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~R 239 (416)
+.|++|.++|..+.--|-..+.. +.| ..++.|.|.+.-
T Consensus 17 ~~g~~v~v~E~~~~~GG~~~~~~--~~g------~~~d~g~~~~~~ 54 (68)
T PF13450_consen 17 KAGYRVTVFEKNDRLGGRARSFR--IPG------YRFDLGAHYFFP 54 (68)
T ss_dssp HTTSEEEEEESSSSSSGGGCEEE--ETT------EEEETSS-SEEE
T ss_pred HCCCcEEEEecCcccCcceeEEE--ECC------EEEeeccEEEeC
Confidence 35999999997655323233333 333 577888887753
No 106
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=24.86 E-value=1.4e+02 Score=25.55 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcc----cccccceeEEEEcC
Q 014874 187 MYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSK----LKYESGVHRVQRVP 241 (416)
Q Consensus 187 mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~----lk~E~GvHrv~Rvp 241 (416)
.-...+.++||.++-+...+.+..|+..+++.+.++..... |..=.-|+.|....
T Consensus 24 RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV~~l~ 82 (96)
T PRK08178 24 HVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRRNQ 82 (96)
T ss_pred HHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEEEECC
Confidence 33445567999999999999999999999999987654433 22334455554444
No 107
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=24.62 E-value=6.3e+02 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHHHHHHHhcCC
Q 014874 54 LITKLESAAKTWKDLSVKLADP 75 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp 75 (416)
....++.+.++.+++|..+-+.
T Consensus 147 ~~~~l~~l~~~~~~le~~l~~~ 168 (318)
T TIGR00383 147 YFPLLENIEDELEELEDEIISG 168 (318)
T ss_pred cHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788899999999888653
No 108
>PLN02678 seryl-tRNA synthetase
Probab=24.56 E-value=3.1e+02 Score=29.61 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CcccceeEEEEc
Q 014874 129 EMIASEIKSLSNELIELEEKLKVLLLPSDP---LDARNIMLEVRA 170 (416)
Q Consensus 129 ~~a~eEl~~l~~~l~~le~~l~~~ll~~~~---~D~~~~~leI~a 170 (416)
..++.++..+++++.++-..|-..+.|.=| .+.++.++.+..
T Consensus 88 ~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g 132 (448)
T PLN02678 88 TEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWG 132 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEc
Confidence 345667777888887776555455544333 344556665543
No 109
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.47 E-value=2.5e+02 Score=27.86 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=14.8
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 014874 73 ADPEVVSNPSEYQKLAQSM 91 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~ 91 (416)
.||.+|-||..+..+.+.+
T Consensus 115 ~dPH~Wldp~~~~~~a~~I 133 (287)
T cd01137 115 PDPHAWMSPKNAIIYVKNI 133 (287)
T ss_pred CCCCcCcCHHHHHHHHHHH
Confidence 3899999999987765444
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.47 E-value=6.6e+02 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=32.1
Q ss_pred chHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH----HHHHhHHHHHHHH
Q 014874 52 PYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLA----QSMAELDEVVSTY 101 (416)
Q Consensus 52 ~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~----ke~a~L~~vv~~~ 101 (416)
+.+-..|+.++..|...+..+.+ +|+.+|+.+. .+...|+..++.+
T Consensus 168 ~~le~~l~~~e~~f~~f~~l~~~----Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 168 DELEKQLENLEEEFSQFVELTES----GDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888887 4676766554 4445566555554
No 111
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.99 E-value=6.7e+02 Score=27.54 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014874 131 IASEIKSLSNELIELEEKLKVLLLPSDPL 159 (416)
Q Consensus 131 a~eEl~~l~~~l~~le~~l~~~ll~~~~~ 159 (416)
|...+..+...+..+...+...-+|.-|.
T Consensus 416 Ar~kL~~~~~~L~~ikr~l~k~~lpgip~ 444 (569)
T PRK04778 416 AREKLERYRNKLHEIKRYLEKSNLPGLPE 444 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 44455556666666655555555666554
No 112
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=23.92 E-value=3.6e+02 Score=25.80 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=34.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..++.+.+.+++- |.+ -||+-++..++-.+.+.++|+.+..++...
T Consensus 90 ~npH~Wldp~~~~~~~~~Ia~~----------------------L~~---~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~ 144 (256)
T PF01297_consen 90 HNPHVWLDPENAKKMAEAIADA----------------------LSE---LDPANKDYYEKNAEKYLKELDELDAEIKEK 144 (256)
T ss_dssp BESTGGGSHHHHHHHHHHHHHH----------------------HHH---HTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHH----------------------HHH---hCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988765544321 111 144445555555666666667766666544
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 145 ~ 145 (256)
T PF01297_consen 145 L 145 (256)
T ss_dssp H
T ss_pred h
Confidence 4
No 113
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.87 E-value=5.5e+02 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=18.8
Q ss_pred CCcccccccccccCccccccCCcHHHHHH
Q 014874 366 DNRVTDHRLKMNFELTSFLDGNIDNAVQS 394 (416)
Q Consensus 366 ~~rVtDhR~~~~~~l~~vl~G~Ld~~I~a 394 (416)
.+.++|..++++.||+..|...+..-+.+
T Consensus 496 ~G~~~~p~l~i~SdLd~ql~~a~~~~~~~ 524 (555)
T TIGR03545 496 KGILEDPNLKINSNLDKLLAKAFKKEIAA 524 (555)
T ss_pred ccccCCCceeeecCHHHHHHHHHHHHHHH
Confidence 46778887777777777766554444333
No 114
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=23.86 E-value=5.4e+02 Score=24.00 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 014874 135 IKSLSNELIELE 146 (416)
Q Consensus 135 l~~l~~~l~~le 146 (416)
+..++.+|+.+.
T Consensus 165 I~~L~~~I~~~~ 176 (184)
T PF05791_consen 165 IPQLQKQIENLN 176 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 115
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.76 E-value=9.2e+02 Score=28.98 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHhHHHHH
Q 014874 80 NPSEYQKLAQSMAELDEVV 98 (416)
Q Consensus 80 D~~~~~kl~ke~a~L~~vv 98 (416)
...+|+++..++..++..+
T Consensus 211 ~a~~y~~l~~e~~~~~~~~ 229 (1163)
T COG1196 211 KAERYQELKAELRELELAL 229 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555443
No 116
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=23.40 E-value=2.5e+02 Score=29.50 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=54.5
Q ss_pred eeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEeccchhcccccccceeEEEEcCCC
Q 014874 164 IMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQT 243 (416)
Q Consensus 164 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~ 243 (416)
-++.+.+|.||.-|.-|-. -|+.-.|- =+--.|..|| +|.+...- +++ +..++++-+.+.|.-
T Consensus 45 ~rv~~kgG~GG~G~ssf~~-------~~~~~~g~----PdGGdGG~GG--~V~~~a~~-~~~---~~l~~~~s~~~a~~G 107 (366)
T KOG1489|consen 45 RRVRIKGGSGGSGASSFFR-------GYRRPRGG----PDGGDGGNGG--HVYFVAKP-GAF---KQLSHVGSLIQAPNG 107 (366)
T ss_pred eeEEeeccCCCCccchhhh-------hcccccCC----CCCCCCCCCc--eEEEEeCc-ccc---cccccCCceEEccCC
Confidence 4789999999998876522 12211110 0111222333 56665541 233 333577777777765
Q ss_pred ccCCc--eeeeeeEEEeeccCCccc----------cccCCCCeEEEEeeecCCCC
Q 014874 244 EAQGR--VHTSTATVAIMPEADEVE----------VVIDPKDIELTTARSGGAGG 286 (416)
Q Consensus 244 ~~~gR--~hTS~a~V~vlP~~~~~~----------~~i~~~dl~i~~~RssGpGG 286 (416)
+..++ .|-+++...+++.+.... -+....+-++-..| ||.||
T Consensus 108 e~~~s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~ar-GG~GG 161 (366)
T KOG1489|consen 108 ENGKSKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAAR-GGEGG 161 (366)
T ss_pred CcCccccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEee-cCCCC
Confidence 54333 334555444444332111 13445667777888 56788
No 117
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.19 E-value=4.5e+02 Score=22.07 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=38.3
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK 103 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~ 103 (416)
.+..++.....+++.++.++-++.+ .|+.-..+-+|+..|...+..+++
T Consensus 9 ~lEekl~~cr~~le~ve~rL~~~eL--s~e~R~~lE~E~~~l~~~l~~~E~ 57 (85)
T PF15188_consen 9 GLEEKLAQCRRRLEAVESRLRRREL--SPEARRSLEKELNELKEKLENNEK 57 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccCC--ChHHHHHHHHHHHHHHHHhhccHH
Confidence 3567788888889999999999987 455666777888888888876654
No 118
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=67 Score=32.23 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=14.3
Q ss_pred cCCceeeeeeEEEeeccC
Q 014874 245 AQGRVHTSTATVAIMPEA 262 (416)
Q Consensus 245 ~~gR~hTS~a~V~vlP~~ 262 (416)
..||+.++.|+|.|.|--
T Consensus 153 ~~g~rK~a~A~V~v~~Gt 170 (275)
T KOG1697|consen 153 AVGRRKCARATVKVQPGT 170 (275)
T ss_pred eccceecceeEEEEecCc
Confidence 457899999999997654
No 119
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.90 E-value=4.5e+02 Score=25.96 Aligned_cols=57 Identities=28% Similarity=0.413 Sum_probs=35.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||-+|-||..+..+.+.+++ .|.+ -||+-.+...+-.+.+.++|+++..+++..
T Consensus 119 ~dPHiWldp~n~~~~a~~I~~----------------------~L~~---~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~ 173 (286)
T cd01019 119 LDPHLWLSPENAAEVAQAVAE----------------------KLSA---LDPDNAATYAANLEAFNARLAELDATIKER 173 (286)
T ss_pred CCCccCCCHHHHHHHHHHHHH----------------------HHHH---HCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999988765443321 1111 255555555566666777777777766555
Q ss_pred cC
Q 014874 153 LL 154 (416)
Q Consensus 153 ll 154 (416)
+-
T Consensus 174 ~~ 175 (286)
T cd01019 174 LA 175 (286)
T ss_pred hh
Confidence 53
No 120
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.79 E-value=8.9e+02 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=10.7
Q ss_pred HHHhHHHHHHHHHHHHHHhc
Q 014874 54 LITKLESAAKTWKDLSVKLA 73 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~ 73 (416)
+..++..++.++.++.....
T Consensus 252 l~~~l~~l~~~l~~l~~~y~ 271 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYT 271 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555444
No 121
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=22.79 E-value=4.7e+02 Score=27.69 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 014874 130 MIASEIKSLSNELIELEEKLKVLLL 154 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ll 154 (416)
.+++++..+++++.++-..|-..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~lPN~~~ 111 (418)
T TIGR00414 87 ELSAALKALEAELQDKLLSIPNIPH 111 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3455666666666666544444443
No 122
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.66 E-value=4.5e+02 Score=21.87 Aligned_cols=24 Identities=50% Similarity=0.656 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 014874 130 MIASEIKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~l 153 (416)
.+.+++..++.++..++.++...+
T Consensus 78 ~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 78 ELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888875544
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.57 E-value=6.8e+02 Score=23.84 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHh
Q 014874 57 KLESAAKTWKDLSVKL 72 (416)
Q Consensus 57 ~le~~~~~~~eLe~~l 72 (416)
.+.++++++.++....
T Consensus 28 lIksLKeei~emkk~e 43 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKE 43 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554443
No 124
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.56 E-value=6.6e+02 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.4
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCC
Q 014874 53 YLITKLESAAKTWKDLSVKLADP 75 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp 75 (416)
.+..++...+.+..+|+..++.+
T Consensus 20 ~LQ~KV~qYr~rc~ele~~l~~~ 42 (182)
T PF15035_consen 20 RLQAKVLQYRKRCAELEQQLSAS 42 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 47788888999999999999654
No 125
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=22.50 E-value=7.3e+02 Score=27.23 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=11.3
Q ss_pred hHHHhHHHHHHHHHHHHHHhc
Q 014874 53 YLITKLESAAKTWKDLSVKLA 73 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~ 73 (416)
.+...+..+..+..++...+.
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~ 31 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVH 31 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 126
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.34 E-value=6.1e+02 Score=23.27 Aligned_cols=42 Identities=29% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 108 EKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKL 149 (416)
Q Consensus 108 ~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l 149 (416)
...-.|+..|+..+..|++=..-+..|+.+|..++.+...++
T Consensus 71 ~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 71 VSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467778877655688866667789999999998765443
No 127
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=22.18 E-value=7.7e+02 Score=24.35 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 014874 86 KLAQSMAELDEVVSTYRK---FKDCEKQLEESRALAKENGNDEEMAEMIASEIK 136 (416)
Q Consensus 86 kl~ke~a~L~~vv~~~~~---~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~ 136 (416)
.+.+|+++|+..+...-. +...-..+.++.+.+...+=++++.+.+.+++.
T Consensus 108 ~~~~e~~~lk~~l~~~~~~~~~~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~ 161 (282)
T TIGR03499 108 ELRKELEALRELLERLLAGLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLP 161 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHCCCCHHHHHHHHHHhh
Confidence 345555666555543221 011223445555555544456777766666664
No 128
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.17 E-value=7.2e+02 Score=24.98 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 125 EEMAEMIASEIKSLSNELIELEEKLKV 151 (416)
Q Consensus 125 ~em~~~a~eEl~~l~~~l~~le~~l~~ 151 (416)
.++.+|...++..+......-..++..
T Consensus 141 del~e~~~~el~~l~~~~q~k~~~il~ 167 (258)
T PF15397_consen 141 DELNEMRQMELASLSRKIQEKKEEILS 167 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777888887777777666644
No 129
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=22.06 E-value=3.7e+02 Score=21.38 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=43.1
Q ss_pred cchhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 014874 44 PKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST 100 (416)
Q Consensus 44 ~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~ 100 (416)
.++..+....+...|..+++++-.|.-+-+-.....||.+.+.+-+.++++.-++..
T Consensus 7 ~elr~ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~e 63 (69)
T PRK14549 7 SEIREMSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQRE 63 (69)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHH
Confidence 445555666788899999999999984443333247899999999999999888774
No 130
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.02 E-value=4.7e+02 Score=21.79 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014874 130 MIASEIKSLSNELIELEEKLK 150 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~ 150 (416)
.+.++...+..++..++.++.
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888877653
No 131
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=21.91 E-value=1e+03 Score=30.39 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
+....+..+.|+.+|.....|+ |+..|.++..++..|+.-+.
T Consensus 1283 l~~e~~~wK~R~q~L~~k~k~~----d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1283 LEEENDRWKQRNQDLLEKYKDS----DKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888999998886 78899999888888876654
No 132
>PF13514 AAA_27: AAA domain
Probab=21.88 E-value=6e+02 Score=30.28 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 124 DEEMAEMIASEIKSLSNELIELEEKL 149 (416)
Q Consensus 124 D~em~~~a~eEl~~l~~~l~~le~~l 149 (416)
+.+-.+.+..++..+..++..++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (1111)
T PF13514_consen 240 GAERLEQLEEELAEAQAQLERLQEEL 265 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 133
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.27 E-value=8.6e+02 Score=26.76 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=30.6
Q ss_pred chHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH----HHhHHHHHHH
Q 014874 52 PYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQS----MAELDEVVST 100 (416)
Q Consensus 52 ~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke----~a~L~~vv~~ 100 (416)
+.+...|+.++..|.+.++.+.+ +|+.+|+++... ...|+..++.
T Consensus 164 ~~Le~~L~~ie~~F~~f~~lt~~----GD~~~A~eil~~l~~~~~~l~~~~e~ 212 (560)
T PF06160_consen 164 EELEKQLENIEEEFSEFEELTEN----GDYLEAREILEKLKEETDELEEIMED 212 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888876 577777766544 3444444443
No 134
>PRK02224 chromosome segregation protein; Provisional
Probab=20.75 E-value=9.1e+02 Score=27.59 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 014874 134 EIKSLSNELIELEEKL 149 (416)
Q Consensus 134 El~~l~~~l~~le~~l 149 (416)
++..+..++.+++.++
T Consensus 573 ~~~~~~~~~~~l~~~~ 588 (880)
T PRK02224 573 EVAELNSKLAELKERI 588 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 135
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.69 E-value=7.3e+02 Score=24.79 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=34.2
Q ss_pred CCCCH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC--------HHHHHHHHHHHHHHHHHHH
Q 014874 77 VVSNP---SEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKEN--GND--------EEMAEMIASEIKSLSNELI 143 (416)
Q Consensus 77 ~w~D~---~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~--~~D--------~em~~~a~eEl~~l~~~l~ 143 (416)
+|..+ +++..+..++..|..-++.|+.-- ..+-..|..|.... .++ ++......+.|..=+++|.
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~V--aeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIr 249 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEV--AEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIR 249 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHH
Confidence 46555 455556666666666666544422 22223344443211 111 1122245555666666667
Q ss_pred HHHHHH
Q 014874 144 ELEEKL 149 (416)
Q Consensus 144 ~le~~l 149 (416)
+||.++
T Consensus 250 eLE~k~ 255 (259)
T PF08657_consen 250 ELERKK 255 (259)
T ss_pred HHHHHH
Confidence 777665
No 136
>PLN02381 valyl-tRNA synthetase
Probab=20.55 E-value=2.5e+02 Score=33.56 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=31.0
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVV-SNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w-~D~~~~~kl~ke~a~L~~vv~ 99 (416)
.+.++++.++++++.++.+|++|+|- .-|... +.++...|.....
T Consensus 1001 rL~K~l~klekei~~~~~kLsN~~F~~KAP~~v--ve~e~~kl~~~~~ 1046 (1066)
T PLN02381 1001 KLRNKMDEIQKQQEKLEKKMNASGYKEKVPANI--QEEDARKLTKLLQ 1046 (1066)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHH--HHHHHHHHHHHHH
Confidence 57788999999999999999999985 233332 3344444444443
No 137
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=20.48 E-value=4.2e+02 Score=20.62 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014874 111 LEESRALAKENGNDEE-MAEMIASEIKSLSNELIELEEKLKVLLL 154 (416)
Q Consensus 111 i~el~eLl~~~~~D~e-m~~~a~eEl~~l~~~l~~le~~l~~~ll 154 (416)
.+.++.|++--..|.. ....|..++.....+|+.|+.+|..+.-
T Consensus 17 ~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 17 KEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555552123443 4788888888888889888888866543
No 138
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=20.24 E-value=3.5e+02 Score=21.15 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=41.5
Q ss_pred chhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 014874 45 KLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST 100 (416)
Q Consensus 45 ~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~ 100 (416)
++..+....+...+..+++++-+|..+.+-.. ..+|.+...+-+.++++.-+...
T Consensus 5 elr~ls~~eL~~~l~~lkkeL~~lR~~~~~~~-~~n~~~i~~~rk~IARi~Tvl~e 59 (66)
T PRK00306 5 ELRELSVEELNEKLLELKKELFNLRFQKATGQ-LENTHRLREVRRDIARIKTVLRE 59 (66)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcCcHHHHHHHHHHHHHHHHHHH
Confidence 44455556688889999999988885554333 47899999999999998887763
No 139
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=20.23 E-value=3.9e+02 Score=21.25 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=41.7
Q ss_pred cchhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 014874 44 PKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST 100 (416)
Q Consensus 44 ~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~ 100 (416)
.++..+....+...+..+++++-.|.-+.+-.. ..||.+.+.+-+.++++.-+...
T Consensus 7 ~elr~ls~~eL~~~l~elk~elf~LRfq~atgq-l~n~~~ir~~RrdIARikTil~e 62 (67)
T CHL00154 7 TDIIDLTDSEISEEIIKTKKELFDLRLKKATRQ-NFKPHLFKHKKHRLAQLLTLLSS 62 (67)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCc-ccChHHHHHHHHHHHHHHHHHHH
Confidence 445555556678888888888888875544333 37999999999999999888764
No 140
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.21 E-value=1e+03 Score=25.06 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-H----H---H-HHHHHHHH
Q 014874 80 NPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLS-N----E---L-IELEEKLK 150 (416)
Q Consensus 80 D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~-~----~---l-~~le~~l~ 150 (416)
+......+.+|+.+|+..++....-. ....++++..++.+.+-++++.+.+-+.+.... . . + +.+.+.+.
T Consensus 81 ~~~~~~~l~~el~~lk~~l~~~~~~~-~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~ 159 (388)
T PRK12723 81 ENSSIEDVLKEVKSLKNELAHKKEEI-NHPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIA 159 (388)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccc-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34455667777777776665321100 112244555555544456666555554443210 0 0 0 11111121
Q ss_pred hhcCCCCC---CcccceeEEE-EcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeecc
Q 014874 151 VLLLPSDP---LDARNIMLEV-RAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSE 206 (416)
Q Consensus 151 ~~ll~~~~---~D~~~~~leI-~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~ 206 (416)
..+-..+| .....+++-+ ..|+|-+-. ++.|...|..-+..+|.++-++....
T Consensus 160 ~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT---~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 160 KTIKCSGSIIDNLKKRVFILVGPTGVGKTTT---IAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred HHhhccCccccCCCCeEEEEECCCCCCHHHH---HHHHHHHHHhhhccCCCeEEEEeccC
Confidence 11211122 1223344444 447876643 35555666655556788888887544
No 141
>PRK11020 hypothetical protein; Provisional
Probab=20.16 E-value=6.3e+02 Score=22.54 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 123 NDEEMAEMIASEIKSLSNELIELEE 147 (416)
Q Consensus 123 ~D~em~~~a~eEl~~l~~~l~~le~ 147 (416)
.|.++......|++.+..+|..+..
T Consensus 28 gd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 28 GDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999988753
No 142
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.10 E-value=3.3e+02 Score=26.76 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 014874 74 DPEVVSNPSEYQKLAQSM 91 (416)
Q Consensus 74 dp~~w~D~~~~~kl~ke~ 91 (416)
||.+|-||..+..+.+.+
T Consensus 100 dPH~Wldp~~~~~~a~~I 117 (276)
T cd01016 100 DPHIWFDVKLWKYAVKAV 117 (276)
T ss_pred CCCcccCHHHHHHHHHHH
Confidence 899999999887654443
Done!