Query 014874
Match_columns 416
No_of_seqs 295 out of 1676
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 19:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5a_X RF1, peptide chain rele 100.0 2E-113 6E-118 859.5 40.8 350 54-407 1-351 (354)
2 1zbt_A RF-1, peptide chain rel 100.0 4E-114 1E-118 867.7 35.8 356 52-407 13-369 (371)
3 2b3t_B RF-1, peptide chain rel 100.0 1E-113 5E-118 861.7 18.6 354 52-409 3-358 (360)
4 1gqe_A Release factor 2, RF2; 100.0 2E-107 7E-112 819.2 39.0 339 54-398 23-363 (365)
5 1rq0_A RF-1, peptide chain rel 100.0 1E-105 4E-110 799.5 27.5 332 62-409 2-334 (342)
6 2ihr_1 Peptide chain release f 100.0 1E-104 5E-109 798.0 24.3 332 55-399 16-352 (365)
7 2rsm_A Probable peptide chain 100.0 3.5E-38 1.2E-42 269.6 7.9 99 235-336 11-110 (115)
8 1j26_A Immature colon carcinom 99.9 1.7E-25 5.8E-30 191.9 9.8 71 264-334 12-107 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 2.4E-25 8E-30 189.9 8.7 69 266-334 7-99 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 1.6E-23 5.4E-28 186.1 7.3 70 266-335 7-100 (140)
11 2lw1_A ABC transporter ATP-bin 95.8 0.046 1.6E-06 44.3 8.8 53 53-105 26-80 (89)
12 3err_A Fusion protein of micro 80.4 8.8 0.0003 40.4 10.8 71 64-146 136-207 (536)
13 3okq_A BUD site selection prot 69.2 59 0.002 28.5 13.6 92 52-147 24-121 (141)
14 3qne_A Seryl-tRNA synthetase, 59.0 90 0.0031 32.4 12.4 23 130-152 82-104 (485)
15 2a26_A Calcyclin-binding prote 57.8 42 0.0014 24.4 6.9 41 105-146 7-47 (50)
16 1xaw_A Occludin; coiled-coil, 57.1 50 0.0017 28.9 8.6 39 54-94 64-102 (140)
17 1gqe_A Release factor 2, RF2; 56.5 93 0.0032 31.2 11.7 94 53-152 6-113 (365)
18 1ses_A Seryl-tRNA synthetase; 55.5 1.1E+02 0.0037 30.9 12.2 29 130-158 75-105 (421)
19 2rbd_A BH2358 protein; putativ 51.6 1E+02 0.0034 26.8 10.0 58 95-153 17-74 (171)
20 2dq0_A Seryl-tRNA synthetase; 51.5 99 0.0034 31.6 11.2 24 130-153 80-103 (455)
21 2lw1_A ABC transporter ATP-bin 50.3 91 0.0031 24.5 9.6 44 106-149 33-79 (89)
22 3lay_A Zinc resistance-associa 46.2 39 0.0013 30.5 6.4 40 59-100 92-131 (175)
23 3uun_A Dystrophin; triple heli 44.2 1.1E+02 0.0038 23.8 14.3 89 55-145 8-97 (119)
24 3uul_A Utrophin; spectrin repe 44.0 1.1E+02 0.0039 23.8 14.9 88 55-144 8-96 (118)
25 1wle_A Seryl-tRNA synthetase; 43.5 1.6E+02 0.0056 30.5 11.5 29 130-158 127-157 (501)
26 3ghg_A Fibrinogen alpha chain; 43.2 28 0.00096 36.7 5.5 26 46-71 54-79 (562)
27 3oja_B Anopheles plasmodium-re 37.9 2.5E+02 0.0086 28.5 11.9 23 126-148 558-580 (597)
28 3na7_A HP0958; flagellar bioge 35.9 2.1E+02 0.0072 26.5 10.1 44 54-100 65-108 (256)
29 2ctk_A Vigilin; K homology typ 33.3 45 0.0015 27.1 4.3 49 283-335 33-87 (104)
30 2axy_A Poly(RC)-binding protei 30.9 21 0.00071 27.0 1.8 46 283-331 21-71 (73)
31 1ysm_A Calcyclin-binding prote 30.0 1.1E+02 0.0039 23.9 5.9 41 104-145 5-45 (77)
32 1vcs_A Vesicle transport throu 29.9 1.5E+02 0.0052 23.9 7.0 53 106-158 42-99 (102)
33 3kbt_A Beta-I spectrin, spectr 29.1 3.4E+02 0.012 24.9 14.6 50 54-103 9-58 (326)
34 2dq3_A Seryl-tRNA synthetase; 28.5 4.1E+02 0.014 26.6 11.4 29 129-157 78-108 (425)
35 2dfs_A Myosin-5A; myosin-V, in 27.8 73 0.0025 36.2 6.2 92 54-152 919-1010(1080)
36 1vq8_V 50S ribosomal protein L 26.9 1.8E+02 0.0062 22.2 6.5 56 44-99 7-62 (71)
37 2ctf_A Vigilin; K homology typ 26.9 63 0.0021 26.2 4.1 49 282-334 42-94 (102)
38 3oa7_A Head morphogenesis prot 26.8 3.4E+02 0.012 25.1 9.3 44 63-107 9-52 (206)
39 3gi1_A LBP, laminin-binding pr 26.8 2.3E+02 0.0077 26.7 8.7 84 73-201 119-202 (286)
40 1u5p_A Spectrin alpha chain, b 26.7 3.1E+02 0.011 23.6 14.3 50 54-103 8-57 (216)
41 1r73_A TM1492, 50S ribosomal p 26.6 1.6E+02 0.0055 22.1 6.1 55 44-99 4-58 (66)
42 3fx7_A Putative uncharacterize 26.3 2.6E+02 0.0091 22.7 9.1 31 53-83 17-47 (94)
43 3ujp_A Mn transporter subunit; 26.0 1.6E+02 0.0056 28.2 7.6 85 73-200 128-212 (307)
44 3twe_A Alpha4H; unknown functi 25.1 1E+02 0.0036 19.2 3.8 20 130-149 5-24 (27)
45 2spc_A Spectrin; cytoskeleton; 24.8 2.4E+02 0.0081 21.8 7.2 63 56-120 10-72 (107)
46 2zjr_V 50S ribosomal protein L 24.6 1.7E+02 0.0057 22.1 5.8 55 44-99 4-58 (67)
47 2ctl_A Vigilin; K homology typ 24.5 68 0.0023 25.6 3.9 49 282-333 32-88 (97)
48 3cx3_A Lipoprotein; zinc-bindi 24.3 2E+02 0.0069 26.9 7.8 56 73-153 117-172 (284)
49 3v2d_2 50S ribosomal protein L 24.2 1.2E+02 0.0039 23.4 4.9 56 43-99 10-65 (72)
50 3hh8_A Metal ABC transporter s 24.1 1.6E+02 0.0054 28.0 7.0 56 73-153 121-176 (294)
51 3na7_A HP0958; flagellar bioge 23.7 2.1E+02 0.0072 26.5 7.7 22 182-203 175-197 (256)
52 1ses_A Seryl-tRNA synthetase; 23.7 5.1E+02 0.018 25.9 11.1 28 129-156 81-108 (421)
53 3lss_A Seryl-tRNA synthetase; 22.6 6.5E+02 0.022 25.9 13.3 25 128-152 113-137 (484)
54 3fb2_A Spectrin alpha chain, b 22.4 3.9E+02 0.013 23.3 13.3 64 54-120 18-82 (218)
55 2prs_A High-affinity zinc upta 22.1 1.7E+02 0.0057 27.5 6.7 19 73-91 114-132 (284)
56 1toa_A Tromp-1, protein (perip 21.8 1.7E+02 0.0057 28.1 6.7 55 74-153 136-190 (313)
57 1pq4_A Periplasmic binding pro 21.6 1.9E+02 0.0066 27.2 7.0 57 73-154 130-186 (291)
58 1deq_A Fibrinogen (alpha chain 21.3 3.7E+02 0.013 27.2 9.1 16 53-68 64-79 (390)
59 2o1e_A YCDH; alpha-beta protei 21.2 1.6E+02 0.0056 28.1 6.5 56 73-153 130-185 (312)
60 1xvl_A Mn transporter, MNTC pr 21.2 1.7E+02 0.0059 28.1 6.7 56 73-153 142-197 (321)
61 1u4q_A Spectrin alpha chain, b 20.9 4.8E+02 0.016 23.8 15.2 67 57-125 223-289 (322)
62 3ibp_A Chromosome partition pr 20.8 36 0.0012 33.3 1.7 111 85-198 27-170 (302)
63 3j21_W 50S ribosomal protein L 20.8 1.6E+02 0.0054 22.6 5.1 57 44-100 4-60 (72)
64 3etw_A Adhesin A; antiparallel 20.6 3.9E+02 0.013 22.6 11.9 19 53-71 6-24 (119)
65 3mfq_A TROA, high-affinity zin 20.5 1.7E+02 0.0058 27.5 6.4 56 73-153 101-156 (282)
66 2dq0_A Seryl-tRNA synthetase; 20.4 3.9E+02 0.013 27.1 9.5 38 129-166 86-126 (455)
67 2cte_A Vigilin; K homology typ 20.1 62 0.0021 25.6 2.7 46 283-332 33-84 (94)
68 1ec6_A RNA-binding protein NOV 20.1 1.2E+02 0.004 23.4 4.3 49 283-334 19-77 (87)
No 1
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=1.7e-113 Score=859.51 Aligned_cols=350 Identities=40% Similarity=0.745 Sum_probs=343.2
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
|+.+|+.+.+++++|+.+|++|+||+|++++++++++++.|+++|+.|++|+...++++++.+|++ |+||++||.+
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~ 76 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKA 76 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999874 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCce
Q 014874 134 EIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFK 213 (416)
Q Consensus 134 El~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~k 213 (416)
|+..++.++++++.+|+.+|+|+||+|.+||||||+||+||+||++||+|||+||++||+++||++++++.++++.||||
T Consensus 77 e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k 156 (354)
T 3d5a_X 77 EREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFS 156 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCccccccC
Q 014874 214 TVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVE 293 (416)
Q Consensus 214 s~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 293 (416)
+|++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+++|+|||||||||||||+
T Consensus 157 ~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~ 236 (354)
T 3d5a_X 157 KVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTD 236 (354)
T ss_dssp EEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred EEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCcccccc
Q 014874 294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDHR 373 (416)
Q Consensus 294 saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVtDhR 373 (416)
|||||+|+||||+|+||++|||++||+.||++|+++|++.+.+++.++....|++++++|+||++||||||||+||||||
T Consensus 237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q~rVtDhR 316 (354)
T 3d5a_X 237 SAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHR 316 (354)
T ss_dssp CEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETT
T ss_pred ceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCCCeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-cCccccccCCcHHHHHHHHHHHHHHHHHHH
Q 014874 374 LKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEEL 407 (416)
Q Consensus 374 ~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~~~l~~~ 407 (416)
||++ +||++||+|+||+||++|+.++++++|+++
T Consensus 317 ~~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~~ 351 (354)
T 3d5a_X 317 IGFTTHDLEGVLSGHLTPILEALKRADQERQLAAL 351 (354)
T ss_dssp TTEEECCHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeCChHHhhCCchHHHHHHHHHHHHHHHHHhh
Confidence 9997 899999999999999999999999999876
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=4.1e-114 Score=867.65 Aligned_cols=356 Identities=45% Similarity=0.746 Sum_probs=310.5
Q ss_pred chHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 014874 52 PYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMI 131 (416)
Q Consensus 52 ~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a 131 (416)
..++.+++.+.+++++|+.+|++|+||+|++++++++++++.|+++|+.|++|+...++++++.+|+++.++|+||++||
T Consensus 13 ~~~~~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a 92 (371)
T 1zbt_A 13 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMA 92 (371)
T ss_dssp CCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999997534699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCC
Q 014874 132 ASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGG 211 (416)
Q Consensus 132 ~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g 211 (416)
.+|+..++.++++++.+|+.+|+|+||+|.+||||||+||+||+||++||+|||+||++||+++||++++++.++++.||
T Consensus 93 ~~e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG 172 (371)
T 1zbt_A 93 KEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGG 172 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCccccc
Q 014874 212 FKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNK 291 (416)
Q Consensus 212 ~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNk 291 (416)
||+|++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+++|+||||||||||||
T Consensus 173 ~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~VNk 252 (371)
T 1zbt_A 173 LKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 252 (371)
T ss_dssp EEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECC---------C
T ss_pred ceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccccccCcCcEEEEEecCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCcccc
Q 014874 292 VETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTD 371 (416)
Q Consensus 292 t~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVtD 371 (416)
|+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++....|++++++|+||++||||||||+||||
T Consensus 253 t~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~ig~g~Rse~IRtYnf~q~rVtD 332 (371)
T 1zbt_A 253 VATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTD 332 (371)
T ss_dssp CCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEETTTTEEEE
T ss_pred cceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeeeEECCCCEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-cCccccccCCcHHHHHHHHHHHHHHHHHHH
Q 014874 372 HRLKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEEL 407 (416)
Q Consensus 372 hR~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~~~l~~~ 407 (416)
||||++ +||++||+|+||+||++|+.++++++|+++
T Consensus 333 hRtg~~~~~l~~VldGdLd~~I~a~l~~~~~~~l~~~ 369 (371)
T 1zbt_A 333 HRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEEL 369 (371)
T ss_dssp TTTTEEESCHHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCeECChHHHhCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999997 899999999999999999999999999875
No 3
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=1.4e-113 Score=861.75 Aligned_cols=354 Identities=40% Similarity=0.738 Sum_probs=294.2
Q ss_pred chHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 014874 52 PYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMI 131 (416)
Q Consensus 52 ~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a 131 (416)
+.|+.+|+.+.+++++|+.+|++|+||+|++++++++++++.|+++|+.|++|+...++++++.+|+ + |+||++||
T Consensus 3 ~~~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e---D~e~~~~a 78 (360)
T 2b3t_B 3 PSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D---DPEMREMA 78 (360)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999998 3 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCC
Q 014874 132 ASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGG 211 (416)
Q Consensus 132 ~eEl~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g 211 (416)
.+|+..++.++++++.+|+..+||+||+|.+||||||+||+||+||++||++||+||++||+++||++++++.++++.||
T Consensus 79 ~~e~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG 158 (360)
T 2b3t_B 79 QDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGG 158 (360)
T ss_dssp ----------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCccc-cccCCCCeEEEEeeecCCCCcccc
Q 014874 212 FKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVE-VVIDPKDIELTTARSGGAGGQNVN 290 (416)
Q Consensus 212 ~ks~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~~-~~i~~~dl~i~~~RssGpGGQ~VN 290 (416)
||+|++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|++++++ +.|+++||+++|+|||||||||||
T Consensus 159 ~k~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VN 238 (360)
T 2b3t_B 159 YKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVN 238 (360)
T ss_dssp EEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCC
T ss_pred ceEEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCcccccccccChhheEEeeecCCCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred ccCccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCccc
Q 014874 291 KVETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVT 370 (416)
Q Consensus 291 kt~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVt 370 (416)
||+|||||+|+||||+|+||++|||++||+.||++|+++|++...+++.++....|++++++|+||++||||||||+|||
T Consensus 239 kt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~~~rVt 318 (360)
T 2b3t_B 239 TTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVT 318 (360)
T ss_dssp CSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTTTEEE
T ss_pred cccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCeeeEECCCCeee
Confidence 99999999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred ccccccc-cCccccccCCcHHHHHHHHHHHHHHHHHHHHh
Q 014874 371 DHRLKMN-FELTSFLDGNIDNAVQSCAAMEQKELLEELAE 409 (416)
Q Consensus 371 DhR~~~~-~~l~~vl~G~Ld~~I~a~~~~~~~~~l~~~~~ 409 (416)
|||||++ +||++||+|+||+||++|+.++++++|+++.+
T Consensus 319 DhRt~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~~~~ 358 (360)
T 2b3t_B 319 DHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 (360)
T ss_dssp EGGGTEEESCHHHHHHTCTHHHHHHHHHHHHHHHCC----
T ss_pred ecccCcEECCHHHHhCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999997 89999999999999999999999999987643
No 4
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=1.9e-107 Score=819.18 Aligned_cols=339 Identities=31% Similarity=0.539 Sum_probs=324.0
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
-..+++.+.+++++|+.+|++|+||+||+++++++++++.|+++|+.|++|+...++++++.+|++++ +|+||+++|.+
T Consensus 23 ~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e-~D~e~~~~a~~ 101 (365)
T 1gqe_A 23 GYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA-DDEETFNEAVA 101 (365)
T ss_dssp HHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHH
Confidence 36679999999999999999999999999999999999999999999999999999999999999864 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCce
Q 014874 134 EIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFK 213 (416)
Q Consensus 134 El~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~k 213 (416)
|+..++.++++++ ..+||+||+|.+||||||+||+||+||++||+|||+||++||+++||++++++.++++.||||
T Consensus 102 e~~~l~~~l~~le----~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~K 177 (365)
T 1gqe_A 102 ELDALEEKLAQLE----FRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIK 177 (365)
T ss_dssp HHHHHHHHHHHHG----GGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEE
T ss_pred HHHHHHHHHHHHH----HHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCcee
Confidence 9999999999987 456889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCC-ccccccCCCCeEEEEeeecCCCCcccccc
Q 014874 214 TVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEAD-EVEVVIDPKDIELTTARSGGAGGQNVNKV 292 (416)
Q Consensus 214 s~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~-~~~~~i~~~dl~i~~~RssGpGGQ~VNkt 292 (416)
+|++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|+++ ++++.|+++||+++|+|||||||||||||
T Consensus 178 s~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt 257 (365)
T 1gqe_A 178 SVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRT 257 (365)
T ss_dssp EEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSS
T ss_pred EEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcccCc
Confidence 99999999999999999999999999999999999999999999999997 48999999999999999999999999999
Q ss_pred CccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCccccc
Q 014874 293 ETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDH 372 (416)
Q Consensus 293 ~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVtDh 372 (416)
+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.+..|+.+ ....||++||||||||+|||||
T Consensus 258 ~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~-~~i~~G~~IRtY~f~~~rVkDh 336 (365)
T 1gqe_A 258 ESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNK-SDIGWGSQIRSYVLDDSRIKDL 336 (365)
T ss_dssp CCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTC-CCCCSCSEEEEEEGGGTEEEET
T ss_pred cceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccCccCCeEeEECCCCeeecc
Confidence 999999999999999999999999999999999999999999998888888888743 3456788999999999999999
Q ss_pred ccccc-cCccccccCCcHHHHHHHHHH
Q 014874 373 RLKMN-FELTSFLDGNIDNAVQSCAAM 398 (416)
Q Consensus 373 R~~~~-~~l~~vl~G~Ld~~I~a~~~~ 398 (416)
|||++ +||++||+||||+||++++.+
T Consensus 337 Rt~~~~~~l~~vldGdld~~I~a~l~~ 363 (365)
T 1gqe_A 337 RTGVETRNTQAVLDGSLDQFIEASLKA 363 (365)
T ss_dssp TTCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred ccCceECCHHHHhCCCHHHHHHHHHHh
Confidence 99997 899999999999999999875
No 5
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=1.1e-105 Score=799.46 Aligned_cols=332 Identities=41% Similarity=0.716 Sum_probs=303.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 014874 62 AKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNE 141 (416)
Q Consensus 62 ~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~ 141 (416)
.+++++|+.+|++|+| |++++++++++++.|+++|+.|++|+ +++++++|++++ +|+ .+|+..++++
T Consensus 2 ~~r~~el~~~~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~----~~~~~~~l~~e~-~D~------~~e~~~l~~~ 68 (342)
T 1rq0_A 2 KEKKKEIEKLLARPDL--TPEQMKNYGMEYAKIEEIENITNRIK----ETQEFIELLREE-GEN------ELEIEKYEKE 68 (342)
T ss_dssp TTTTTHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTTT-TTC------CSCHHHHHHH
T ss_pred hHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHhc-CCH------HHHHHHHHHH
Confidence 4578999999999999 99999999999999999999999987 888999998643 355 7789999999
Q ss_pred HHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCceEEEEEEec
Q 014874 142 LIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKG 221 (416)
Q Consensus 142 l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~ks~~~~i~G 221 (416)
+++++.+|+.+|+| +|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.||||+|++.|+|
T Consensus 69 l~~le~~l~~lL~p---~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G 145 (342)
T 1rq0_A 69 LDQLYQELLFLLSP---EASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKG 145 (342)
T ss_dssp HHHHHHHHHHHHSC---SSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEES
T ss_pred HHHHHHHHHHhcCc---cccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEEC
Confidence 99999999888875 558999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCccccccCCCCeEEEEeeecCCCCccccccCccEEEEEc
Q 014874 222 NRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHK 301 (416)
Q Consensus 222 ~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~ 301 (416)
++||++||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+++|+|||||||||||||+|||||+|+
T Consensus 146 ~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hl 225 (342)
T 1rq0_A 146 KNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHL 225 (342)
T ss_dssp TTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEET
T ss_pred cCHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccccccccChhHeEEEeecCCCCCCcccccccceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcCCcceeeecCCCcccccccccc-cCc
Q 014874 302 PTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYKDNRVTDHRLKMN-FEL 380 (416)
Q Consensus 302 PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtYnf~~~rVtDhR~~~~-~~l 380 (416)
||||+|+||++|||++||+.||++|+++|++++.+++.++....|++++++|+||++||||||||+||||||||++ +||
T Consensus 226 PtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~Rse~IRtYnf~~~rVtDhRt~~~~~~l 305 (342)
T 1rq0_A 226 PTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRL 305 (342)
T ss_dssp TTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTTTEEEETTTTEEESCH
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeEEEECCCCeeeecccCceeCCH
Confidence 9999999999999999999999999999999999988988889999999999999999999999999999999997 899
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHHHHHh
Q 014874 381 TSFLDGNIDNAVQSCAAMEQKELLEELAE 409 (416)
Q Consensus 381 ~~vl~G~Ld~~I~a~~~~~~~~~l~~~~~ 409 (416)
++||+||||+||++|+.++++++|+++.+
T Consensus 306 ~~vldGdLd~~I~a~l~~~~~~~l~~~~~ 334 (342)
T 1rq0_A 306 QEILDGDLDEIISKLIEHDIENNLEEVLG 334 (342)
T ss_dssp HHHHTTCCHHHHHHHHHHHHTTTHHHHC-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998854
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=1.3e-104 Score=797.96 Aligned_cols=332 Identities=32% Similarity=0.563 Sum_probs=314.7
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHH
Q 014874 55 ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRA-LAKENGNDEEMAEMIAS 133 (416)
Q Consensus 55 ~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~e-Ll~~~~~D~em~~~a~e 133 (416)
..+|+.+.+++++|+.+|++|+||+||+++++++++++.|+++|+.|++|+....+++++.+ |+++ +| ++|.+
T Consensus 16 ~~~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~e--ed----~~a~~ 89 (365)
T 2ihr_1 16 IFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAE--ER----EALKP 89 (365)
T ss_dssp SSSHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCT--TG----GGTGG
T ss_pred hcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cH----HHHHH
Confidence 45699999999999999999999999999999999999999999999999999999998888 8753 23 78999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeccccCCCce
Q 014874 134 EIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFK 213 (416)
Q Consensus 134 El~~l~~~l~~le~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v~~~~~~~~~g~k 213 (416)
|+..++.++++++ +.+||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.||||
T Consensus 90 e~~~l~~~~~~le----~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~k 165 (365)
T 2ihr_1 90 ELEEAAKKLDELY----HQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGID 165 (365)
T ss_dssp GTHHHHHHHHHHH----HHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEE
T ss_pred HHHHHHHHHHHHH----HHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeE
Confidence 9999999999987 446789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhcccccccceeEEEEcCCCccCCceeeeeeEEEeeccCCc-cccccCCCCeEEEEeeecCCCCcccccc
Q 014874 214 TVVMEIKGNRVYSKLKYESGVHRVQRVPQTEAQGRVHTSTATVAIMPEADE-VEVVIDPKDIELTTARSGGAGGQNVNKV 292 (416)
Q Consensus 214 s~~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~-~~~~i~~~dl~i~~~RssGpGGQ~VNkt 292 (416)
+|++.|+|++||++||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+++|+|||||||||||||
T Consensus 166 s~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt 245 (365)
T 2ihr_1 166 YAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTT 245 (365)
T ss_dssp EEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGS
T ss_pred EEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCceeccc
Confidence 999999999999999999999999999999999999999999999999974 8899999999999999999999999999
Q ss_pred CccEEEEEcCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccccCCcCCcceeeecCCCccc
Q 014874 293 ETAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQR--LSQVGTGARAEKIRTYNYKDNRVT 370 (416)
Q Consensus 293 ~saVri~H~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r--~~~~~~~~Rse~IRtYnf~~~rVt 370 (416)
+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++....| +.+++ ||++||||||||+|||
T Consensus 246 ~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~---~G~~IRtYnf~~~rVt 322 (365)
T 2ihr_1 246 DSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIE---WGSQIRSYVLDKNYVK 322 (365)
T ss_dssp CSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCSC---CCSCSEEEEGGGTEEE
T ss_pred ceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---ccCCeeeEECCCccch
Confidence 999999999999999999999999999999999999999999999999888888 44554 6669999999999999
Q ss_pred ccccccc-cCccccccCCcHHHHHHHHHHH
Q 014874 371 DHRLKMN-FELTSFLDGNIDNAVQSCAAME 399 (416)
Q Consensus 371 DhR~~~~-~~l~~vl~G~Ld~~I~a~~~~~ 399 (416)
|||||++ +||++||+||||+||++++.+.
T Consensus 323 DhRtg~~~~~l~~VldGdld~~I~a~l~~~ 352 (365)
T 2ihr_1 323 DHRTGLMRHDPENVLDGDLMDLIWAGLEWK 352 (365)
T ss_dssp ETTTCCEESCHHHHTTTCCHHHHHHHHHHH
T ss_pred hcccCceeCChHHHhCCcHHHHHHHHHHHH
Confidence 9999997 8999999999999999999876
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=3.5e-38 Score=269.57 Aligned_cols=99 Identities=26% Similarity=0.370 Sum_probs=94.9
Q ss_pred eEEEEcCCCccCCceeeeeeEEEeeccCCcc-ccccCCCCeEEEEeeecCCCCccccccCccEEEEEcCCceEEEEcCcc
Q 014874 235 HRVQRVPQTEAQGRVHTSTATVAIMPEADEV-EVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEER 313 (416)
Q Consensus 235 Hrv~Rvp~~~~~gR~hTS~a~V~vlP~~~~~-~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H~PtGi~v~~~~~R 313 (416)
|||||+|+|+++| ||+++|+|+|+.++. .+.|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|
T Consensus 11 ~rvqrvp~tes~g---ts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~R 87 (115)
T 2rsm_A 11 LRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTR 87 (115)
T ss_dssp CCCCCCCCCCCCC---CCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSS
T ss_pred eeEEecCcccCCc---cceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCC
Confidence 7999999999999 999999999999864 689999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 014874 314 TQLQNKSRALQLLRAKLYEIKVR 336 (416)
Q Consensus 314 SQ~~Nk~~A~~~L~~kL~~~~~~ 336 (416)
||++||+.||++|++||+++...
T Consensus 88 SQ~~Nr~~A~~~L~~kL~e~~~~ 110 (115)
T 2rsm_A 88 SVDQNRKIARKVLQEKVDVFYNS 110 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988753
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.92 E-value=1.7e-25 Score=191.89 Aligned_cols=71 Identities=28% Similarity=0.432 Sum_probs=67.4
Q ss_pred ccccccCCCCeEEEEeeecCCCCccccccCccEEEE-EcCCc------------------------eEEEEcCcccHHHH
Q 014874 264 EVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLF-HKPTG------------------------IRIFCTEERTQLQN 318 (416)
Q Consensus 264 ~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~-H~PtG------------------------i~v~~~~~RSQ~~N 318 (416)
.+++.|+++||+++|+|||||||||||||+|||+|+ |+||| |+|+||++|||++|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence 467889999999999999999999999999999997 99998 99999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014874 319 KSRALQLLRAKLYEIK 334 (416)
Q Consensus 319 k~~A~~~L~~kL~~~~ 334 (416)
|+.||++|+++|+++.
T Consensus 92 r~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 92 LAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998754
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.92 E-value=2.4e-25 Score=189.87 Aligned_cols=69 Identities=42% Similarity=0.536 Sum_probs=65.9
Q ss_pred ccccCCCCeEEEEeeecCCCCccccccCccEEEEE------cC-----------------Cc-eEEEEcCcccHHHHHHH
Q 014874 266 EVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFH------KP-----------------TG-IRIFCTEERTQLQNKSR 321 (416)
Q Consensus 266 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~H------~P-----------------tG-i~v~~~~~RSQ~~Nk~~ 321 (416)
++.|+++||+++|+|||||||||||||+|||+|+| +| || |+|+||++|||++||+.
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 57799999999999999999999999999999999 88 88 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014874 322 ALQLLRAKLYEIK 334 (416)
Q Consensus 322 A~~~L~~kL~~~~ 334 (416)
|+++|+++|++..
T Consensus 87 Al~rL~~~l~~a~ 99 (108)
T 2jva_A 87 ALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998754
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.88 E-value=1.6e-23 Score=186.05 Aligned_cols=70 Identities=41% Similarity=0.487 Sum_probs=66.2
Q ss_pred ccccCCCCeEEEEeeecCCCCccccccCccEEEE------EcCC------------------ceEEEEcCcccHHHHHHH
Q 014874 266 EVVIDPKDIELTTARSGGAGGQNVNKVETAIDLF------HKPT------------------GIRIFCTEERTQLQNKSR 321 (416)
Q Consensus 266 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVri~------H~Pt------------------Gi~v~~~~~RSQ~~Nk~~ 321 (416)
++.|+++||+++|+|||||||||||||+|+|+|+ |+|+ ||+|+||++|||++|++.
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~ 86 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREA 86 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHH
Confidence 5789999999999999999999999999999999 6997 599999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014874 322 ALQLLRAKLYEIKV 335 (416)
Q Consensus 322 A~~~L~~kL~~~~~ 335 (416)
|+++|.++|+++..
T Consensus 87 A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 87 ALARLVAMIKELTT 100 (140)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=95.79 E-value=0.046 Score=44.27 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=44.3
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhHHHHHH-HHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVV-SNPSEYQKLAQSMAELDEVVS-TYRKFK 105 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w-~D~~~~~kl~ke~a~L~~vv~-~~~~~~ 105 (416)
.+-..|+.++.++.+|+..|+||+|+ .|+.+...+..++..+..-++ .|.+|.
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999987 699999999999988877654 445553
No 12
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=80.40 E-value=8.8 Score=40.40 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=52.9
Q ss_pred HHHHHH-HHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 014874 64 TWKDLS-VKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNEL 142 (416)
Q Consensus 64 ~~~eLe-~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l 142 (416)
.++.|+ .-+.+|+| +++.+.+.++-.+-|-.+|.+...|..+.+++..+++-++ .+++++..+++++
T Consensus 136 ~~~~l~~~y~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~eLk----------~lE~eL~e~e~eL 203 (536)
T 3err_A 136 IREKMKKNYMSNPSY--NYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQ----------KLEDDAKDNQQKL 203 (536)
T ss_dssp HHHHHHHHTTTSTTC--SHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHHHH----------HHHHHHHHHHHHH
Confidence 346665 46889987 8999999999999999999999988888776666665543 2555666666666
Q ss_pred HHHH
Q 014874 143 IELE 146 (416)
Q Consensus 143 ~~le 146 (416)
..+.
T Consensus 204 ~~ll 207 (536)
T 3err_A 204 EALL 207 (536)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 13
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=69.24 E-value=59 Score=28.52 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=65.7
Q ss_pred chHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHhcCCCH
Q 014874 52 PYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQL------EESRALAKENGNDE 125 (416)
Q Consensus 52 ~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i------~el~eLl~~~~~D~ 125 (416)
..+..+++.++.-++.|..-...-.+-+.|.....+.+++..+..-+.....|.+.++-+ .||..++++ .
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceE----Q 99 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEE----Q 99 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH----H
Confidence 468889999999999999988888888899999999999999988888877776554321 445555542 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014874 126 EMAEMIASEIKSLSNELIELEE 147 (416)
Q Consensus 126 em~~~a~eEl~~l~~~l~~le~ 147 (416)
++..+.++-+.+|++.++.+.+
T Consensus 100 qfl~~QedL~~DL~eDL~ka~e 121 (141)
T 3okq_A 100 QFLTLQEELILDLKEDLGKALE 121 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555543
No 14
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.99 E-value=90 Score=32.42 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014874 130 MIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.+.+++..+++++.++++++...
T Consensus 82 ~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888543
No 15
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=57.79 E-value=42 Score=24.36 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 014874 105 KDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELE 146 (416)
Q Consensus 105 ~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le 146 (416)
.++..|++|++.|+... +-+-.++.+..|+..++.++..++
T Consensus 7 eeL~~DL~El~~Ll~~A-kR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 7 EELQKDLEEVKVLLEKA-TRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778999999999875 578889999999999988887654
No 16
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=57.06 E-value=50 Score=28.94 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAEL 94 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L 94 (416)
|...++.+..++.+|+.+|..-. .++.+++.+..|++.+
T Consensus 64 Lhaev~~v~~~F~~Ld~~L~~l~--~~s~e~~~i~~EY~r~ 102 (140)
T 1xaw_A 64 LQSVLDEINKELSRLDKELDDYR--EESEEYMAAADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC--TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHH
Confidence 56678888888888888876521 3555665544443333
No 17
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=56.54 E-value=93 Score=31.22 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=46.2
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAE---------LDEVVSTYRKFKDCEKQLEESRALAKENGN 123 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~---------L~~vv~~~~~~~~~~~~i~el~eLl~~~~~ 123 (416)
.+...++.+..++..+...+.=+. -.+++..+.++++. ...+...+..++.....+.+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d--- 79 (365)
T 1gqe_A 6 PVNNRIQDLTERSDVLRGYLDYDA---KKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLED--- 79 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 455777888888877766552111 12334444443322 233333333333333333333333332
Q ss_pred CHHHHHHHHHH----H-HHHHHHHHHHHHHHHhh
Q 014874 124 DEEMAEMIASE----I-KSLSNELIELEEKLKVL 152 (416)
Q Consensus 124 D~em~~~a~eE----l-~~l~~~l~~le~~l~~~ 152 (416)
-.++.+|+.+| + +.+.+++..++.++..+
T Consensus 80 ~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l~~l 113 (365)
T 1gqe_A 80 VSGLLELAVEADDEETFNEAVAELDALEEKLAQL 113 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666543 2 44667777777766543
No 18
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=55.49 E-value=1.1e+02 Score=30.95 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cCCCCC
Q 014874 130 MIASEIKSLSNELIELEEKLKVL--LLPSDP 158 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~--ll~~~~ 158 (416)
.+.+++..+++++.++++++... .+|.-|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 75 ALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34567777777788887777543 355443
No 19
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=51.55 E-value=1e+02 Score=26.77 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014874 95 DEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 95 ~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~l 153 (416)
.++.+.|..|.....-+.-++-+++-. .|+|++.+++.-++..+.+++.+++.++..=
T Consensus 17 ~E~~~lW~~l~~~~~~i~~~~~f~~~~-~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g 74 (171)
T 2rbd_A 17 GEVFSTWTYLSTNNGLINGYRSFINHT-GDEDLKNLIDEAIQAMQDENHQLEELLRSNG 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 355666777777777777777777764 6999999999999999999999998886543
No 20
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.51 E-value=99 Score=31.62 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 014874 130 MIASEIKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~l 153 (416)
.+.+++..+++++.++++++...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 80 EIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888885543
No 21
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.25 E-value=91 Score=24.53 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014874 106 DCEKQLEESRALAKENG---NDEEMAEMIASEIKSLSNELIELEEKL 149 (416)
Q Consensus 106 ~~~~~i~el~eLl~~~~---~D~em~~~a~eEl~~l~~~l~~le~~l 149 (416)
.++.++.++...+.+++ .|.+-...+..++..++.+|+.+..+.
T Consensus 33 ~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 33 DLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777776543 467666667778888888888777665
No 22
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.19 E-value=39 Score=30.49 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 014874 59 ESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST 100 (416)
Q Consensus 59 e~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~ 100 (416)
+.+.....+|...+..|++ |+++++++.+|+++|...+..
T Consensus 92 ~ql~akr~EL~aL~~a~~~--DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 92 QQLISKRYEYNALLTASSP--DTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHH
No 23
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=44.15 E-value=1.1e+02 Score=23.77 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=52.9
Q ss_pred HHhHHHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 55 ITKLESAAKTWKDLSVKLAD-PEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 55 ~~~le~~~~~~~eLe~~l~d-p~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
...++.+..=+.+.+..+.. .++-.|+.......+++..+..-+...+.-. ..-......|+.....+++-...+..
T Consensus 8 ~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v--~~~~~~g~~L~~~~~~~~~~~~~i~~ 85 (119)
T 3uun_A 8 QTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRV--GNILQLGSKLIGTGKLSEDEETEVQE 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455555656666665543 3466899999999999999888888655422 22223455666643345555445555
Q ss_pred HHHHHHHHHHHH
Q 014874 134 EIKSLSNELIEL 145 (416)
Q Consensus 134 El~~l~~~l~~l 145 (416)
.+..+...-+.+
T Consensus 86 ~l~~l~~rw~~L 97 (119)
T 3uun_A 86 QMNLLNSRWECL 97 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
No 24
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=43.96 E-value=1.1e+02 Score=23.81 Aligned_cols=88 Identities=9% Similarity=0.044 Sum_probs=53.1
Q ss_pred HHhHHHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 55 ITKLESAAKTWKDLSVKLAD-PEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 55 ~~~le~~~~~~~eLe~~l~d-p~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
...++.+..=+.+.|..+.. +++..|+...+...+++..+..-+...+.-. ..-......|+.....+++-...+..
T Consensus 8 ~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v--~~v~~~g~~L~~~~~~~~~~~~~i~~ 85 (118)
T 3uul_A 8 QIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSV--GSVLQAGNQLMTQGTLSDEEEFEIQE 85 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 45566666667777776654 4577899999999999999888888655422 22223455666643334443334444
Q ss_pred HHHHHHHHHHH
Q 014874 134 EIKSLSNELIE 144 (416)
Q Consensus 134 El~~l~~~l~~ 144 (416)
.+..+...-..
T Consensus 86 ~l~~l~~rw~~ 96 (118)
T 3uul_A 86 QMTLLNARWEA 96 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444333333
No 25
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.52 E-value=1.6e+02 Score=30.48 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cCCCCC
Q 014874 130 MIASEIKSLSNELIELEEKLKVL--LLPSDP 158 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l~~~--ll~~~~ 158 (416)
.+.+++..+++++.++++++... .+|.-|
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~ 157 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQFYLRALRLPNQT 157 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34557777777788888777543 345433
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.18 E-value=28 Score=36.67 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=14.9
Q ss_pred hhccccchHHHhHHHHHHHHHHHHHH
Q 014874 46 LICMAEPYLITKLESAAKTWKDLSVK 71 (416)
Q Consensus 46 ~~~~~~~~l~~~le~~~~~~~eLe~~ 71 (416)
.+.-.+-.+...|+.|+.+++++++.
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhh
Confidence 33334445666677777777666443
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.93 E-value=2.5e+02 Score=28.52 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014874 126 EMAEMIASEIKSLSNELIELEEK 148 (416)
Q Consensus 126 em~~~a~eEl~~l~~~l~~le~~ 148 (416)
+...++.+|...+..++.+++++
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666544
No 28
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.91 E-value=2.1e+02 Score=26.50 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=30.3
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST 100 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~ 100 (416)
+...++....+++..+.++..- .|++.+..+.+++..++.-+..
T Consensus 65 ~e~~i~~~~~ri~~~~~~l~~v---~~~kE~~aL~kEie~~~~~i~~ 108 (256)
T 3na7_A 65 NEQTLQDTNAKIASIQKKMSEI---KSERELRSLNIEEDIAKERSNQ 108 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777542 4888888888888877765543
No 29
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=33.27 E-value=45 Score=27.10 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCCCcccccc--CccEEEEEcCCc----eEEEEcCcccHHHHHHHHHHHHHHHHHHHHH
Q 014874 283 GAGGQNVNKV--ETAIDLFHKPTG----IRIFCTEERTQLQNKSRALQLLRAKLYEIKV 335 (416)
Q Consensus 283 GpGGQ~VNkt--~saVri~H~PtG----i~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~ 335 (416)
|+||-++++. +|.|+|.-.+.| .+. .... + .|-+.|..++...+.+.+.
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~-I~G~--~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIA-ITGL--A-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEE-EEEC--H-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEE-EEcC--H-HHHHHHHHHHHHHHhhHHH
Confidence 8999999954 577887655555 333 2222 3 6788899998888866553
No 30
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=30.93 E-value=21 Score=27.03 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCCCcccccc--CccEEEEEcCCce---EEEEcCcccHHHHHHHHHHHHHHHHH
Q 014874 283 GAGGQNVNKV--ETAIDLFHKPTGI---RIFCTEERTQLQNKSRALQLLRAKLY 331 (416)
Q Consensus 283 GpGGQ~VNkt--~saVri~H~PtGi---~v~~~~~RSQ~~Nk~~A~~~L~~kL~ 331 (416)
|+||.++++. +|.++|.-.+.|- +|..... ..+-..|..++..+|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 8999999954 5778877666552 3444443 4567778888888775
No 31
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=30.00 E-value=1.1e+02 Score=23.92 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 014874 104 FKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIEL 145 (416)
Q Consensus 104 ~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~l 145 (416)
+.++..|++|++.|+... .-+-.++.+..|+..++.++..+
T Consensus 5 ~eeL~~DLeEl~~Ll~~A-kR~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKS-TRKRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999865 46778888888888888777764
No 32
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=29.87 E-value=1.5e+02 Score=23.95 Aligned_cols=53 Identities=30% Similarity=0.416 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014874 106 DCEKQLEESRALAKE-----NGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDP 158 (416)
Q Consensus 106 ~~~~~i~el~eLl~~-----~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ll~~~~ 158 (416)
+.+..++|+.+|+.. ..-++..+.....-+...+.++..+..+++.....+.+
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~~~~ 99 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASGP 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344555666666541 12356678888888899999999998888776665443
No 33
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=29.13 E-value=3.4e+02 Score=24.93 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=42.8
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK 103 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~ 103 (416)
...++..+..=+.+.+..++.+++-.|+..++.+.+++..+..-++.+..
T Consensus 9 f~~~~~el~~Wl~e~~~~l~~~~~g~d~~~~~~ll~kh~~~~~el~~~~~ 58 (326)
T 3kbt_A 9 YYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGR 58 (326)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888899999999999999999999999988887654
No 34
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.53 E-value=4.1e+02 Score=26.59 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCCC
Q 014874 129 EMIASEIKSLSNELIELEEKLKVLL--LPSD 157 (416)
Q Consensus 129 ~~a~eEl~~l~~~l~~le~~l~~~l--l~~~ 157 (416)
..+.+++..+++++.++++++...+ +|.-
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 78 KELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456788888888888888885543 4543
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=27.80 E-value=73 Score=36.24 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIAS 133 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~e 133 (416)
+...-..++.++.+|+.++.+- .++...+..++..+++.... +..++.+++++++...++...-......+++
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~-----e~~n~~L~~~~~~~~~~~~~--e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~ 991 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQ-----NKEYKSLLEKMNNLEITYST--ETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991 (1080)
T ss_dssp -------------------------------------CHHHHHHHHH--HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 014874 134 EIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 134 El~~l~~~l~~le~~l~~~ 152 (416)
|+..+++++.++.++.+..
T Consensus 992 e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 992 EIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 36
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=26.89 E-value=1.8e+02 Score=22.21 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=43.8
Q ss_pred cchhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 44 PKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 44 ~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
.++..+....+...|..+++++-.|.-+.+-..-..+|.+.+.+-+.++++.-++.
T Consensus 7 ~elr~~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~ 62 (71)
T 1vq8_V 7 QEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 62 (71)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHH
Confidence 45556666678899999999999988766552234799999999999999888776
No 37
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.86 E-value=63 Score=26.22 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=32.2
Q ss_pred cCCCCccccccCc---cEEEEEcC-CceEEEEcCcccHHHHHHHHHHHHHHHHHHHH
Q 014874 282 GGAGGQNVNKVET---AIDLFHKP-TGIRIFCTEERTQLQNKSRALQLLRAKLYEIK 334 (416)
Q Consensus 282 sGpGGQ~VNkt~s---aVri~H~P-tGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~ 334 (416)
=|+||+++++... .|+| +.| ..=.|+.... ...-+.|...|...+.++.
T Consensus 42 IG~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 42 IGKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp HTTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHHH
Confidence 3899999996643 6777 466 3335666654 4567777777777665543
No 38
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=26.80 E-value=3.4e+02 Score=25.07 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014874 63 KTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDC 107 (416)
Q Consensus 63 ~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~ 107 (416)
+.++++-.++.||++. .+++-..+.+-.+++..+|..|.++...
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~s~~s~~~dl~~s 52 (206)
T 3oa7_A 9 EEHEDILNKLLDPELA-QSERTEALQQLRVNYGSFVSEYNDLTKS 52 (206)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999984 4556556666667888888877766543
No 39
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=26.79 E-value=2.3e+02 Score=26.70 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=48.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..++.+.+.+++ .|.+ -||+=.+..++-.+.+..+|+.+..++...
T Consensus 119 ~dPHvWldp~~~~~~a~~I~~----------------------~L~~---~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~ 173 (286)
T 3gi1_A 119 YDPHTWTDPVLAGEEAVNIAK----------------------ELGR---LDPKHKDSYTKNAKAFKKEAEQLTEEYTQK 173 (286)
T ss_dssp BCCCGGGSHHHHHHHHHHHHH----------------------HHHH---HCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceecCHHHHHHHHHHHHH----------------------HHHH---HChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999998775443321 1111 255555555555666777777777766555
Q ss_pred cCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 014874 153 LLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCTL 201 (416)
Q Consensus 153 ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~v 201 (416)
+-+- . ...++--++.- .-|+++.|+++.-
T Consensus 174 l~~~---~-~~~~v~~H~af----------------~Yf~~~yGl~~~~ 202 (286)
T 3gi1_A 174 FKKV---R-SKTFVTQHTAF----------------SYLAKRFGLKQLG 202 (286)
T ss_dssp HTTC---S-CCEEEEEESCC----------------HHHHHHTTCEEEE
T ss_pred HhcC---C-CCEEEEECCch----------------HHHHHHCCCeEee
Confidence 4332 1 23345556543 2456677777543
No 40
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=26.70 E-value=3.1e+02 Score=23.64 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK 103 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~ 103 (416)
....++.+..-+.+.+..+..+++=.|......+.+++..++.-+..+..
T Consensus 8 F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~ 57 (216)
T 1u5p_A 8 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHED 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888889999999998889999999999999999998887654
No 41
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=26.59 E-value=1.6e+02 Score=22.13 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=42.8
Q ss_pred cchhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 44 PKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 44 ~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
.++..+....+...|..+++++-.|.-+.+- +-.++|.+.+.+-+.++++.-++.
T Consensus 4 ~elr~~s~~EL~~~l~elk~ELf~LR~q~at-gql~n~~~ir~vRr~IARi~Tvl~ 58 (66)
T 1r73_A 4 SELRNYTDEELKNLLEEKKRQLMELRFQLAM-GQLKNTSLIKLTKRDIARIKTILR 58 (66)
T ss_dssp SHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHc-cCccCcHHHHHHHHHHHHHHHHHH
Confidence 3455566667888999999999888766554 334799999999999999888776
No 42
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.26 E-value=2.6e+02 Score=22.73 Aligned_cols=31 Identities=16% Similarity=0.015 Sum_probs=23.4
Q ss_pred hHHHhHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 014874 53 YLITKLESAAKTWKDLSVKLADPEVVSNPSE 83 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~ 83 (416)
.|....+.++.+...|.....+-+-|.|++.
T Consensus 17 ~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr 47 (94)
T 3fx7_A 17 HLERFKELLREEVNSLSNHFHNLESWRDARR 47 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHhhHHH
Confidence 3666677888888888877766667999766
No 43
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=26.02 E-value=1.6e+02 Score=28.21 Aligned_cols=85 Identities=12% Similarity=0.193 Sum_probs=47.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..++.+.+.++. .|.+ -||+=.+..++-.+.+.++|+.+..++...
T Consensus 128 ~DPHvWldp~n~~~~a~~I~~----------------------~L~~---~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~ 182 (307)
T 3ujp_A 128 PNPHAWMSPRNALVYVENIRQ----------------------AFVE---LDPDNAKYYNANAAVYSEQLKAIDRQLGAD 182 (307)
T ss_dssp BCCCCTTCHHHHHHHHHHHHH----------------------HHHH---HCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHH----------------------HHHH---hCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999998775443321 1221 245555555555666777777777666554
Q ss_pred cCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014874 153 LLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLVRMYQKYSEQNSWKCT 200 (416)
Q Consensus 153 ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~ 200 (416)
+-. -|.. +..++--++.- .-|+++.|++..
T Consensus 183 l~~-~p~~-~~~~v~~H~af----------------~Yfa~~yGl~~~ 212 (307)
T 3ujp_A 183 LEQ-VPAN-QRFLVSCEGAF----------------SYLARDYGMEEI 212 (307)
T ss_dssp HSS-SCGG-GCEEEEEESTT----------------HHHHHHTTCEEE
T ss_pred Hhh-cccc-CCEEEEECchH----------------HHHHHHCCCcEE
Confidence 421 1111 23344455543 345667777754
No 44
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.08 E-value=1e+02 Score=19.18 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014874 130 MIASEIKSLSNELIELEEKL 149 (416)
Q Consensus 130 ~a~eEl~~l~~~l~~le~~l 149 (416)
+++.|++++++.+.++.++|
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45667788888888887665
No 45
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=24.82 E-value=2.4e+02 Score=21.81 Aligned_cols=63 Identities=10% Similarity=0.039 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014874 56 TKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKE 120 (416)
Q Consensus 56 ~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~ 120 (416)
.+.+.++.=+.+-|..++..++-+|...+..+.|++..+..-+.++..-- ..=...+..|++.
T Consensus 10 ~d~~~~e~Wl~~~e~~l~~~d~g~~l~~v~~Llkkh~~fe~~~~~~~~~i--~~l~~~a~~L~~~ 72 (107)
T 2spc_A 10 RDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKI--AALQTVADQLIAQ 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHc
Confidence 34455555555556666666666778888999999999999888765322 2222345556553
No 46
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=24.57 E-value=1.7e+02 Score=22.13 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=42.6
Q ss_pred cchhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 44 PKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 44 ~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
.++..+....+...|..+++++-.|.-+.+- +-..+|.+.+.+-+.++++.-++.
T Consensus 4 ~elr~~s~~EL~~~l~elk~ELf~LR~q~at-gql~n~~~ir~vRr~IARi~Tvl~ 58 (67)
T 2zjr_V 4 SEMRNLQATDFAKEIDARKKELMELRFQAAA-GQLAQPHRVRQLRREVAQLNTVKA 58 (67)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHHHHHH
Confidence 3455566667888999999999888766554 334799999999999999887775
No 47
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.50 E-value=68 Score=25.63 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred cCCCCcccccc--CccEEEEEcCCc------eEEEEcCcccHHHHHHHHHHHHHHHHHHH
Q 014874 282 GGAGGQNVNKV--ETAIDLFHKPTG------IRIFCTEERTQLQNKSRALQLLRAKLYEI 333 (416)
Q Consensus 282 sGpGGQ~VNkt--~saVri~H~PtG------i~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~ 333 (416)
=|+||.++|+. +|.|+|.-.+.| -.|..... ..|-+.|..++...+.+.
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHH
Confidence 38999999955 578887765555 13444432 357777888888776543
No 48
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.28 E-value=2e+02 Score=26.91 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=32.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..++.+.+.++. .|.+ -||+=.+..++-.+.+..+|+.+..++...
T Consensus 117 ~dPH~Wldp~~~~~~a~~I~~----------------------~L~~---~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~ 171 (284)
T 3cx3_A 117 YDPHTWLDPEKAGEEAQIIAD----------------------KLSE---VDSEHKETYQKNAQAFIKKAQELTKKFQPK 171 (284)
T ss_dssp BCCCGGGSHHHHHHHHHHHHH----------------------HHHH---HSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHH----------------------HHHH---hCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999998765443321 1111 144444444555555666666666665444
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 172 l 172 (284)
T 3cx3_A 172 F 172 (284)
T ss_dssp H
T ss_pred H
Confidence 4
No 49
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=24.21 E-value=1.2e+02 Score=23.43 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=44.5
Q ss_pred ccchhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHH
Q 014874 43 TPKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVS 99 (416)
Q Consensus 43 ~~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~ 99 (416)
..++..+....+...|..+++++-.|.-+.+-..+ .+|.+.+.+-+.++++.-++.
T Consensus 10 ~~elr~~s~eEL~~~L~elk~ELf~LR~q~atgql-~n~~~ir~vRr~IARi~Tvl~ 65 (72)
T 3v2d_2 10 LEEARKLSPVELEKLVREKKRELMELRFQASIGQL-SQNHKIRDLKRQIARLLTVLN 65 (72)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 34455566667888899999999998877765555 799999999999999988776
No 50
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=24.09 E-value=1.6e+02 Score=27.97 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=35.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..++.+.+.+++ .|.+ -||+=.+..++-.+.+..+|+.+..++...
T Consensus 121 ~dPHvWldp~~~~~~a~~I~~----------------------~L~~---~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~ 175 (294)
T 3hh8_A 121 EDPHAWLNLENGIIYSKNIAK----------------------QLIA---KDPKNKETYEKNLKAYVAKLEKLDKEAKSK 175 (294)
T ss_dssp BCCCGGGSHHHHHHHHHHHHH----------------------HHHH---HCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCceeCCHHHHHHHHHHHHH----------------------HHHH---hCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999998775443321 1222 255555555556677777778887777554
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 176 l 176 (294)
T 3hh8_A 176 F 176 (294)
T ss_dssp T
T ss_pred H
Confidence 4
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.75 E-value=2.1e+02 Score=26.50 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHH-hCCCeEEEee
Q 014874 182 GDLVRMYQKYSE-QNSWKCTLIS 203 (416)
Q Consensus 182 ~~L~~mY~~~a~-~~g~~~~v~~ 203 (416)
..|+..|.+.-. ..|.-+-.|.
T Consensus 175 ~~lL~~Yerir~~~~g~avv~v~ 197 (256)
T 3na7_A 175 PKIYSFYERIRRWAKNTSIVTIK 197 (256)
T ss_dssp HHHHHHHHHHHHHHGGGSEEECB
T ss_pred HHHHHHHHHHHHhCCCceEEEee
Confidence 478899998886 5676555543
No 52
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.73 E-value=5.1e+02 Score=25.90 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014874 129 EMIASEIKSLSNELIELEEKLKVLLLPS 156 (416)
Q Consensus 129 ~~a~eEl~~l~~~l~~le~~l~~~ll~~ 156 (416)
+.+++++..+++++..+--.|-....|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 108 (421)
T 1ses_A 81 KRLEEALREKEARLEALLLQVPLPPWPG 108 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 4567788888888888776666655444
No 53
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.65 E-value=6.5e+02 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 128 AEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 128 ~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
...+.+++..+++++.++++++...
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888543
No 54
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=22.43 E-value=3.9e+02 Score=23.29 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=47.2
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 014874 54 LITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRK-FKDCEKQLEESRALAKE 120 (416)
Q Consensus 54 l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~-~~~~~~~i~el~eLl~~ 120 (416)
....+..+..-+.+.+..++..++-.|+..+..+.+++..+..-++.+.. +..+. ..-..|+..
T Consensus 18 F~~~~~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~---~~G~~Ll~~ 82 (218)
T 3fb2_A 18 FLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFE---QFGQQLLAH 82 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHhC
Confidence 45567777777888888998888889999999999999999988886543 22222 344455553
No 55
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=22.14 E-value=1.7e+02 Score=27.45 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=14.6
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 014874 73 ADPEVVSNPSEYQKLAQSM 91 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~ 91 (416)
.||-+|-||..++.+.+.+
T Consensus 114 ~dPH~Wldp~~~~~~a~~I 132 (284)
T 2prs_A 114 FNMHLWLSPEIARATAVAI 132 (284)
T ss_dssp CCCCGGGCHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHH
Confidence 4999999999987754443
No 56
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=21.81 E-value=1.7e+02 Score=28.11 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014874 74 DPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 74 dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~l 153 (416)
||.+|-||..++.+.+.+++ .|.+ -||+=.+.-++-.+.+..+|+.+..++...+
T Consensus 136 DPHvWldp~n~~~~a~~I~~----------------------~L~~---~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l 190 (313)
T 1toa_A 136 DPHVWFDVKLWSYSVKAVYE----------------------SLCK---LLPGKTREFTQRYQAYQQQLDKLDAYVRRKA 190 (313)
T ss_dssp CCCGGGSHHHHHHHHHHHHH----------------------HHHH---HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeCCHHHHHHHHHHHHH----------------------HHHH---HChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988765443321 1111 1454444445555556666666666554433
No 57
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.58 E-value=1.9e+02 Score=27.25 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=35.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||-+|-||..++.+.+.++. .|.+ -||+=.+.-++-.+.+..+|+.|..++...
T Consensus 130 ~DPH~Wldp~~~~~~a~~I~~----------------------~L~~---~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~ 184 (291)
T 1pq4_A 130 ADPHIWLSPTLVKRQATTIAK----------------------ELAE---LDPDNRDQYEANLAAFLAELERLNQELGQI 184 (291)
T ss_dssp BCCCGGGCHHHHHHHHHHHHH----------------------HHHH---HCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHH----------------------HHHH---HCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999998765443321 1111 155555555556666777777777766555
Q ss_pred cC
Q 014874 153 LL 154 (416)
Q Consensus 153 ll 154 (416)
+-
T Consensus 185 l~ 186 (291)
T 1pq4_A 185 LQ 186 (291)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.28 E-value=3.7e+02 Score=27.17 Aligned_cols=16 Identities=0% Similarity=0.106 Sum_probs=8.1
Q ss_pred hHHHhHHHHHHHHHHH
Q 014874 53 YLITKLESAAKTWKDL 68 (416)
Q Consensus 53 ~l~~~le~~~~~~~eL 68 (416)
.+..+++.|..++.++
T Consensus 64 ~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 64 DFTSRINKLRDSLFNY 79 (390)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 59
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=21.23 E-value=1.6e+02 Score=28.09 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=33.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||-+|-||..++.+.+.++. .|.+ -||+=.+..++-.+.+.++|++|..++...
T Consensus 130 ~DPHvWldp~n~~~~a~~I~~----------------------~L~~---~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~ 184 (312)
T 2o1e_A 130 MDPHVWLSPVLAQKEVKNITA----------------------QIVK---QDPDNKEYYEKNSKEYIAKLQDLDKLYRTT 184 (312)
T ss_dssp CCCGGGGSHHHHHHHHHHHHH----------------------HHHH---HCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHH----------------------HHHH---hCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999998765443321 1111 145544555555566666666666665444
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 185 l 185 (312)
T 2o1e_A 185 A 185 (312)
T ss_dssp H
T ss_pred h
Confidence 4
No 60
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=21.21 E-value=1.7e+02 Score=28.14 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=33.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..++.+.+.+++ .|.+ -||+=.+.-++-.+.+..+|+++..++...
T Consensus 142 ~DPHvWldp~n~~~~a~~I~~----------------------~L~~---~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~ 196 (321)
T 1xvl_A 142 PNPHAWMSPRNALVYVENIRQ----------------------AFVE---LDPDNAKYYNANAAVYSEQLKAIDRQLGAD 196 (321)
T ss_dssp BCCCGGGSHHHHHHHHHHHHH----------------------HHHH---HCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHH----------------------HHHH---HCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999998765443321 1111 145544555555666666777776666544
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 197 l 197 (321)
T 1xvl_A 197 L 197 (321)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.93 E-value=4.8e+02 Score=23.78 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 014874 57 KLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDE 125 (416)
Q Consensus 57 ~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~ 125 (416)
.++.+..=+.+.+..+..+++..|...+..+.+++..+..-+..+..-. ..-......|+.....|+
T Consensus 223 ~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v--~~l~~~~~~L~~~~~~~~ 289 (322)
T 1u4q_A 223 NVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRV--NDVCANGEDLIKKNNHHV 289 (322)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCh
Confidence 3344444455666678888888999999999999999999888665322 222234556666433343
No 62
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.84 E-value=36 Score=33.32 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=58.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHH------HHHHHHHHHHHHHHHHhhc
Q 014874 85 QKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDE-----EMAEMIASE------IKSLSNELIELEEKLKVLL 153 (416)
Q Consensus 85 ~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~-----em~~~a~eE------l~~l~~~l~~le~~l~~~l 153 (416)
..+..++++|+...-.|..+..... .+.+.....=.|. .|...+..| ...+...-..++.++..+.
T Consensus 27 eql~~~i~~L~~~ap~W~~aq~al~---rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs 103 (302)
T 3ibp_A 27 EQLQSRIQSLMQRAPVWLAAQNSLN---QLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLS 103 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHH---HHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456677777777776666554443 3333332110122 232222222 3334445556677777777
Q ss_pred CCCCCCccc---------ceeE-E------------EEcCCCcHHHHHHHHHHHHHHHHHHHhCCCe
Q 014874 154 LPSDPLDAR---------NIML-E------------VRAGAGGDEAGIWAGDLVRMYQKYSEQNSWK 198 (416)
Q Consensus 154 l~~~~~D~~---------~~~l-e------------I~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~ 198 (416)
-|.++.|.. +++| | +.|--||.-.++.|.||-..+.+.+..-.|.
T Consensus 104 ~pgg~~dprL~~LAe~~GGvlLseiYDDI~ieDApyfsAlyGpar~AIVV~Dl~~~~~~L~~l~dcP 170 (302)
T 3ibp_A 104 QPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTDCP 170 (302)
T ss_dssp SCCCCCCHHHHHHHHHSSSEEHHHHSTTCCTTTHHHHHHHTGGGGSEEECSSCHHHHHHHTTCCSSC
T ss_pred CCCCCCCHHHHHHHHHhCCEehhhhhcCCChhhHHHHHHHhcccceeeEeCCHHHHHHHHhhccCCC
Confidence 788777663 1111 1 1233455555556666677777776655554
No 63
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.83 E-value=1.6e+02 Score=22.64 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=44.1
Q ss_pred cchhccccchHHHhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 014874 44 PKLICMAEPYLITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVST 100 (416)
Q Consensus 44 ~~~~~~~~~~l~~~le~~~~~~~eLe~~l~dp~~w~D~~~~~kl~ke~a~L~~vv~~ 100 (416)
.++..+....+...|..++.++-.|.-+.+-.....+|.+.+.+-+.++++.-++..
T Consensus 4 ~elr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~e 60 (72)
T 3j21_W 4 SEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKE 60 (72)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 344556666788899999999999887765544347999999999999999888773
No 64
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.58 E-value=3.9e+02 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=14.0
Q ss_pred hHHHhHHHHHHHHHHHHHH
Q 014874 53 YLITKLESAAKTWKDLSVK 71 (416)
Q Consensus 53 ~l~~~le~~~~~~~eLe~~ 71 (416)
.+...++.++..|..|..+
T Consensus 6 ~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4667788888888887655
No 65
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.46 E-value=1.7e+02 Score=27.53 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=35.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014874 73 ADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVL 152 (416)
Q Consensus 73 ~dp~~w~D~~~~~kl~ke~a~L~~vv~~~~~~~~~~~~i~el~eLl~~~~~D~em~~~a~eEl~~l~~~l~~le~~l~~~ 152 (416)
.||.+|-||..++.+.+.++. .|. +-||+=.+..++-.+.+.++|+.+..++...
T Consensus 101 ~dPHvWldp~~~~~~a~~I~~----------------------~L~---~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~ 155 (282)
T 3mfq_A 101 VDPHFWFSIPLYKSAVAVASE----------------------ELQ---KLLPAKAEMIQKNTEKYQAQLDDLHAWVEKE 155 (282)
T ss_dssp ECCCGGGSHHHHHHHHHHHHH----------------------HHT---TTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHH----------------------HHH---HhChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999988765443321 122 2466666666666677777777777666544
Q ss_pred c
Q 014874 153 L 153 (416)
Q Consensus 153 l 153 (416)
+
T Consensus 156 l 156 (282)
T 3mfq_A 156 L 156 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.39 E-value=3.9e+02 Score=27.11 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCcccceeE
Q 014874 129 EMIASEIKSLSNELIELEEKLKVLLL---PSDPLDARNIML 166 (416)
Q Consensus 129 ~~a~eEl~~l~~~l~~le~~l~~~ll---~~~~~D~~~~~l 166 (416)
+.+++++..+++++..+--.|-.... |-++.++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~ 126 (455)
T 2dq0_A 86 GELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPI 126 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEE
Confidence 34566777777777766544433333 334344445543
No 67
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.14 E-value=62 Score=25.59 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=29.6
Q ss_pred CCCCcccccc--CccEEEEEcC----CceEEEEcCcccHHHHHHHHHHHHHHHHHH
Q 014874 283 GAGGQNVNKV--ETAIDLFHKP----TGIRIFCTEERTQLQNKSRALQLLRAKLYE 332 (416)
Q Consensus 283 GpGGQ~VNkt--~saVri~H~P----tGi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~ 332 (416)
|+||.++++. +|.|+|.-.+ +|.+. .... ..+-+.|..++...+.+
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~-I~G~---~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIK-ITGT---KEGIEKARHEVLLISAE 84 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEE-EEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEE-EEEC---HHHHHHHHHHHHHHhhc
Confidence 8999999954 4666665432 45433 3332 46777788888877654
No 68
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=20.13 E-value=1.2e+02 Score=23.39 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=31.9
Q ss_pred CCCCccccc--cCccEEEEEcCC-----c---eEEEEcCcccHHHHHHHHHHHHHHHHHHHH
Q 014874 283 GAGGQNVNK--VETAIDLFHKPT-----G---IRIFCTEERTQLQNKSRALQLLRAKLYEIK 334 (416)
Q Consensus 283 GpGGQ~VNk--t~saVri~H~Pt-----G---i~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~ 334 (416)
|+||.+++. ..|.++|.-.+. | -.|..... ..+-..|..++...+.+.+
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhccc
Confidence 889998884 345666653321 2 45555554 4577889999999886543
Done!