RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014874
(416 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 251 bits (643), Expect = 3e-81
Identities = 106/347 (30%), Positives = 190/347 (54%), Gaps = 16/347 (4%)
Query: 55 ITKLESAAKTWKDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEES 114
++ + ++++ +L P+V + P Q L + + L+ VV T + K + +
Sbjct: 21 YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80
Query: 115 RALAKENGNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGG 174
LA +DEE +E+ L E +L+ + S D+ + L+++AG+GG
Sbjct: 81 LELA-VEADDEETFNEAVAELD----ALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGG 135
Query: 175 DEAGIWAGDLVRMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGV 234
EA WA L RMY +++E +K +I SE E G K+V ++I G+ Y L+ E+GV
Sbjct: 136 TEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGV 195
Query: 235 HRVQRVPQTEAQGRVHTSTATVAIMPEADE-VEVVIDPKDIELTTARSGGAGGQNVNKVE 293
HR+ R ++ GR HTS ++ + PE D+ +++ I+P D+ + R+ GAGGQ+VN+ E
Sbjct: 196 HRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTE 255
Query: 294 TAIDLFHKPTGIRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKI--RTQRLSQVG 351
+A+ + H PTGI C +R+Q +NK +A++ ++AKLYE++++++ + S +G
Sbjct: 256 SAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG 315
Query: 352 TGARAEKIRTYNYKDNRVTDHRLKMNFELT---SFLDGNIDNAVQSC 395
G +IR+Y D+R+ D R E + LDG++D +++
Sbjct: 316 WG---SQIRSYVLDDSRIKDLRT--GVETRNTQAVLDGSLDQFIEAS 357
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 237 bits (605), Expect = 1e-75
Identities = 135/343 (39%), Positives = 223/343 (65%), Gaps = 10/343 (2%)
Query: 66 KDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDE 125
+++ L D + +++ ++ L++ A+L +V + ++ ++ +E ++ + +D
Sbjct: 7 EEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDP 62
Query: 126 EMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLV 185
EM EM E++ + +LE++L+VLLLP DP D RN LEVRAG GGDEA ++AGDL
Sbjct: 63 EMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLF 122
Query: 186 RMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEA 245
RMY +Y+E W+ ++S+SE E GG+K ++ +I G+ VY +LK+ESG HRVQRVP TE+
Sbjct: 123 RMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATES 182
Query: 246 QGRVHTSTATVAIMPEADEVEVV-IDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTG 304
QGR+HTS TVA+MPE + E+ ++P D+ + T RS GAGGQ+VN ++AI + H PTG
Sbjct: 183 QGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTG 242
Query: 305 IRIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNY 364
I + C +ER+Q +NK++AL +L A+++ ++ ++Q+ + R + +G+G R+++ RTYN+
Sbjct: 243 IVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNF 302
Query: 365 KDNRVTDHRLKMNFELT---SFLDGNIDNAVQSCAAMEQKELL 404
RVTDHR+ N L ++G +D ++ Q + L
Sbjct: 303 PQGRVTDHRI--NLTLYRLDEVMEGKLDMLIEPIIQEHQADQL 343
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 215 bits (548), Expect = 2e-67
Identities = 133/343 (38%), Positives = 209/343 (60%), Gaps = 17/343 (4%)
Query: 66 KDLSVKLADPEVVSNPSEYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDE 125
K++ LA P++ + + A+++E+ + + K+ ++ +E L +E G +E
Sbjct: 6 KEIEKLLARPDLTPE--QMKNYGMEYAKIEEIENITNRIKETQEFIE----LLREEGENE 59
Query: 126 EMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIMLEVRAGAGGDEAGIWAGDLV 185
E E+ L + + LL + + ++E+R G GG+EA ++A DL
Sbjct: 60 LEIEKYEKELDQL--------YQELLFLLSPE--ASDKAIVEIRPGTGGEEAALFARDLF 109
Query: 186 RMYQKYSEQNSWKCTLISSSEAEKGGFKTVVMEIKGNRVYSKLKYESGVHRVQRVPQTEA 245
RMY +Y+E+ W + E + GG + VV +KG Y LKYESGVHRVQRVP TE+
Sbjct: 110 RMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTES 169
Query: 246 QGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGI 305
GR+HTSTATVA++PE +E ++ I P+D+++ T R+ G GGQ VNK E+A+ + H PTGI
Sbjct: 170 GGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGI 229
Query: 306 RIFCTEERTQLQNKSRALQLLRAKLYEIKVREQQEKIRTQRLSQVGTGARAEKIRTYNYK 365
+ C ER+Q QNK AL++LRA+LY+++ +++ +I +R SQ+GTG R+EKIRTYN+
Sbjct: 230 VVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFP 289
Query: 366 DNRVTDHRLKM-NFELTSFLDGNIDNAVQSCAAMEQKELLEEL 407
NRVTDHR+ ++ L LDG++D + + + LEE+
Sbjct: 290 QNRVTDHRINYTSYRLQEILDGDLDEIISKLIEHDIENNLEEV 332
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 72.7 bits (178), Expect = 2e-16
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 25/98 (25%)
Query: 260 PEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFH------------------- 300
A + I + ++ RS G GGQNVNKV + ++
Sbjct: 8 EHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALT 67
Query: 301 ------KPTGIRIFCTEERTQLQNKSRALQLLRAKLYE 332
K + + R Q +N + LQ +R + E
Sbjct: 68 HKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 31.8 bits (72), Expect = 0.035
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 92 AELDEVVSTYRKFKDCEKQLEESRA----------LAKENGNDEEMAEM--IASEIKSLS 139
+L+ +++ R+ ++ +K+L+E + A + +A + E K L
Sbjct: 25 LDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84
Query: 140 NELIELEEKLKVLLL 154
L E E +L+ LLL
Sbjct: 85 EALREKEARLEALLL 99
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus
influenzae [TaxId: 727]}
Length = 135
Score = 28.4 bits (63), Expect = 0.86
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 124 DEEMAEMIASEIKSLSNELIELEEKLK 150
D+E A + ++I E L E+L+
Sbjct: 108 DQEKAMAVYAQIDDFLIESSFLLEQLR 134
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit
TTHA0048 {Thermus thermophilus [TaxId: 274]}
Length = 116
Score = 27.9 bits (62), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 124 DEEMAEMIASEIKSLSNELIELEEKLK 150
DE +AE I +E+ EL +L+
Sbjct: 89 DEALAERIYAELPKALERFQELLRRLE 115
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 245
Score = 28.2 bits (63), Expect = 1.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 105 KDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNELIELEE 147
KD EKQ R G D+E + +EI + ++L+ E
Sbjct: 64 KDLEKQRLSYRHWLNVEGVDQEALNSLLNEIDVVHSQLMGAER 106
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120
[TaxId: 1163]}
Length = 169
Score = 27.4 bits (60), Expect = 2.5
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 122 GNDEEMAEMIASEIKSLSNELIELEE 147
G E +AE+I E + L ++ +
Sbjct: 13 GKTESVAEIIRDEFGNDVVTLHDVSQ 38
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Length = 175
Score = 27.4 bits (60), Expect = 2.5
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 122 GNDEEMAEMIASEIKSLSNELIELEE 147
GN E +A+MI ++ ++ ++ +
Sbjct: 12 GNTENIAKMIQKQLGKDVADVHDIAK 37
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus
[TaxId: 63363]}
Length = 184
Score = 26.6 bits (58), Expect = 3.9
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 122 GNDEEMAEMIASEIKSLSNELIELEEKLKVLLLPSDPLDARNIML 166
GN ++MAE++A +SL E+ K D L A + +
Sbjct: 13 GNTKKMAELVAEGARSLEG--TEVRLKHVDEATKEDVLWADGLAV 55
>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 113
Score = 25.8 bits (57), Expect = 5.2
Identities = 12/94 (12%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 67 DLSVKLADPEVVSNPSEYQKLAQSMAEL---DEVVSTYRKFKDCEKQLEESRALAKENGN 123
L+ +L + + +Q+L ++ ++ + + +D + +L E +
Sbjct: 5 ALARQLE--QAIRASEPFQQLKRAYEDVRRDETAYRMFANVRDIQLRLHEKQMRGAAI-L 61
Query: 124 DEEMAEMIASEIKSLSNELI----ELEEKLKVLL 153
+E+ + + + NE + LE+++ + +
Sbjct: 62 PDEIEQAQKAMALAQQNEKLARLMALEQQMSITI 95
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 25.5 bits (56), Expect = 7.2
Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 83 EYQKLAQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMIASEIKSLSNEL 142
+++ + E D+V + + K +KQ + K + A++ A + + +
Sbjct: 27 FFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEIPV 86
Query: 143 I----ELEEKLKVLL 153
I + + ++ LL
Sbjct: 87 IQEFRDSQMEVNDLL 101
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 131
Score = 25.5 bits (56), Expect = 7.7
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 88 AQSMAELDEVVSTYRKFKDCEKQLEESRALAKENGNDEEMAEMI---ASEIKSLSNELI 143
A EV + F++ +L E LA N+EE +++ AS++++L ++I
Sbjct: 31 AAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVI 89
>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 395
Score = 26.1 bits (56), Expect = 7.8
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 125 EEMAEMIASEIKSLSNELIELEEKLKVLLLPSD---PLDARNIMLEVRAGAGGDE 176
MA++ A++I+ + ++ ++ + LL+ D P+ A +I + VR+ +
Sbjct: 31 STMAQVCAAQIR----DWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ 81
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Length = 173
Score = 25.8 bits (56), Expect = 8.6
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 120 ENGNDEEMAEMIASEIKSLSNELIELEE 147
GN E+A+ I + + ++ I++++
Sbjct: 9 STGNTTEVADFIGKTLGAKADAPIDVDD 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.351
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,451,727
Number of extensions: 67291
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 28
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.7 bits)