BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014875
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 164/348 (47%), Gaps = 34/348 (9%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 12 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 64
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 65 CGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGV--SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAA 249
+ + +V +G + GQLG+ ++D + +PQ I I ++A + +AA
Sbjct: 125 AVTXE---GEVQSWGRNQNGQLGLGDTEDSL----VPQKIQAFEGIRIKXVAAGAEHTAA 177
Query: 250 LSAEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVL 301
++ +G LY WG G +D V GW H + ++ G +
Sbjct: 178 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALY 237
Query: 302 MLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWG 361
G S +G L + P K+ L + QI+ GA H+ +T + + WG
Sbjct: 238 TYGWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGARHTXALTSDGKLYGWG 292
Query: 362 WGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 409
W + GQ+G+GN DQ P V F + ++V CG T A++
Sbjct: 293 WNKFGQVGVGNNLDQCSPVQV----RFPDDQKVVQVSCGWRHTLAVTE 336
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 150/353 (42%), Gaps = 61/353 (17%)
Query: 31 QQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIG 90
Q +V+SWG G G+LG G D ACG +H LA+T
Sbjct: 75 QSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXE----- 129
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
G+V SWGR +GQLG G+ D+L P+ + F+G R I ++AG H+ V++ G L+
Sbjct: 130 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR--IKXVAAGAEHTAAVTEDGDLYGW 187
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
G G +G LG GD P +V+S + +ACG RH++ + +Y +G K
Sbjct: 188 GWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISV---SYSGALYTYGWSKY 244
Query: 211 GQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVN 270
GQLG + +P L + I IS + AL+++G LY W
Sbjct: 245 GQLG--HGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGW----------- 291
Query: 271 CXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKV 330
GWN G + + P+ V
Sbjct: 292 ----------------GWNKF-----------------GQVGVGNNLDQCSPVQVRFP-- 316
Query: 331 SNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVN 383
D KV+Q++ G H+ VTE + WG G +GQLG+G + D+ PK++
Sbjct: 317 ---DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 366
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 60/287 (20%)
Query: 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS 190
ISAG +HS + + + G G GQLGHGD SP ++S+ + + CG H+
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAAL 250
+ + G +VY +G G G+LG LP LH I I I+ A+
Sbjct: 71 VAYSQS--GXEVYSWGWGDFGRLGHGNSSDLFTPLP--IKALHGIRIKQIACGDSHCLAV 126
Query: 251 SAEGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGM 310
+ EG + +WGR N L LG + +
Sbjct: 127 TXEGEVQSWGRNQNGQ----------------------------------LGLGDTEDSL 152
Query: 311 LSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGL 370
+ P+++ + +G+++ +AAGAEH+A VTE+ + WGWG +G LGL
Sbjct: 153 V--PQKIQA-------------FEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL 197
Query: 371 GNTCDQIHP-KVVNLGDEFQN------RDTQLEVFCGSGFTYAISRH 410
G+ D++ P +V + G E + R T + G+ +TY S++
Sbjct: 198 GDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKY 244
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 337 KVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLE 396
KV+ I+AGA HS + + +WG GE GQLG G+ D+ P ++ D Q +
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ----IVS 62
Query: 397 VFCGSGFTYAISR 409
V CG+ T A S+
Sbjct: 63 VTCGADHTVAYSQ 75
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 157/346 (45%), Gaps = 30/346 (8%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 10 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 62
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251
+ + +V +G + GQLG+ V PQ I I ++A + +AA++
Sbjct: 123 AVTME---GEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVT 177
Query: 252 AEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLML 303
+G LY WG G +D V GW H + ++ G +
Sbjct: 178 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 237
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWG 363
G S +G L + P K+ L + QI+ G H+ +T + + WGW
Sbjct: 238 GWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWN 292
Query: 364 EHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 409
+ GQ+G+GN DQ P V F + ++V CG T A++
Sbjct: 293 KFGQVGVGNNLDQCSPVQV----RFPDDQKVVQVSCGWRHTLAVTE 334
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 147/354 (41%), Gaps = 20/354 (5%)
Query: 36 VWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFS 95
V SWG G DGQLG G D CG H +A + G +V+S
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQS----GMEVYS 80
Query: 96 WGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTF 155
WG G G+LGHG D P P+ G R I I+ G +H V+ G + + G
Sbjct: 81 WGWGDFGRLGHGNSSDLFTPLPIKALHGIR--IKQIACGDSHCLAVTMEGEVQSWGRNQN 138
Query: 156 GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215
GQLG GD P K+ +F + +A G H+ + +D +YG+G G+ G LG+
Sbjct: 139 GQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED---GDLYGWGWGRYGNLGL 195
Query: 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR----GFNSTSD--V 269
R V + G + +V S + S + Y W + G D +
Sbjct: 196 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 270 NCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEK 329
GW H + LT DG++ G + G + + P+ V
Sbjct: 256 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 314
Query: 330 VSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVN 383
D KV+Q++ G H+ VTE + WG G +GQLG+G + D+ PK++
Sbjct: 315 ----DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V SWG +GQLG G D A G H A+T G ++
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED-----GDLY 183
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
WG G G LG G+ D L P+ VT G + ++ ++ GW H+ VS SG L+T G
Sbjct: 184 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSM--VACGWRHTISVSYSGALYTYGWSK 241
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+GQLGHGD H P K+ + N + QI+ G RH++ L D ++YG+G K GQ+G
Sbjct: 242 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD---GKLYGWGWNKFGQVG 298
Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264
V + + S QV D ++V +S + A++ +++ WGRG N
Sbjct: 299 VGNN-LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 133/313 (42%), Gaps = 20/313 (6%)
Query: 31 QQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIG 90
Q ++V+SWG G G+LG G D ACG +H LA+T +
Sbjct: 73 QSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT-----ME 127
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
G+V SWGR +GQLG G+ D+L P+ + F+G R I ++AG H+ V++ G L+
Sbjct: 128 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR--IKMVAAGAEHTAAVTEDGDLYGW 185
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
G G +G LG GD P +V+S + + +ACG RH++ + +Y +G K
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV---SYSGALYTYGWSKY 242
Query: 211 GQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR--------G 262
GQLG + +P L + I IS + AL+++G LY WG G
Sbjct: 243 GQLG--HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 300
Query: 263 FNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRP 322
N GW H L +T V G +G L E V P
Sbjct: 301 NNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Query: 323 LSVALEKVSNLDG 335
+ V G
Sbjct: 361 KIIEALSVDGASG 373
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 60/287 (20%)
Query: 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS 190
ISAG +HS + + + G G GQLGHGD SP ++S+ + + CG H+
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAAL 250
+ + G +VY +G G G+LG LP LH I I I+ A+
Sbjct: 69 VAYSQS--GMEVYSWGWGDFGRLGHGNSSDLFTPLP--IKALHGIRIKQIACGDSHCLAV 124
Query: 251 SAEGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGM 310
+ EG + +WGR N L LG + +
Sbjct: 125 TMEGEVQSWGRNQNGQ----------------------------------LGLGDTEDSL 150
Query: 311 LSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGL 370
+ P+++ + +G+++ +AAGAEH+A VTE+ + WGWG +G LGL
Sbjct: 151 V--PQKIQA-------------FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL 195
Query: 371 GNTCDQIHP-KVVNLGDEFQN------RDTQLEVFCGSGFTYAISRH 410
G+ D++ P +V + G E + R T + G+ +TY S++
Sbjct: 196 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 337 KVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLE 396
KV+ I+AGA HS + + +WG GE GQLG G+ D+ P ++ D Q +
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ----IVS 60
Query: 397 VFCGSGFTYAISR 409
V CG+ T A S+
Sbjct: 61 VTCGADHTVAYSQ 73
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 157/346 (45%), Gaps = 30/346 (8%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 10 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 62
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALS 251
+ + +V +G + GQLG+ V PQ I I ++A + +AA++
Sbjct: 123 AVTME---GEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVT 177
Query: 252 AEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLML 303
+G LY WG G +D V GW H + ++ G +
Sbjct: 178 EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 237
Query: 304 GGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWG 363
G S +G L + P K+ L + QI+ G H+ +T + + WGW
Sbjct: 238 GWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWN 292
Query: 364 EHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 409
+ GQ+G+GN DQ P V F + ++V CG T A++
Sbjct: 293 KFGQVGVGNNLDQCSPVQV----RFPDDQKVVQVSCGWRHTLAVTE 334
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 147/354 (41%), Gaps = 20/354 (5%)
Query: 36 VWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFS 95
V SWG G DGQLG G D CG H +A + G +V+S
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQS----GMEVYS 80
Query: 96 WGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTF 155
WG G G+LGHG D P P+ G R I I+ G +H V+ G + + G
Sbjct: 81 WGWGDFGRLGHGNSSDLFTPLPIKALHGIR--IKQIACGDSHCLAVTMEGEVQSWGRNQN 138
Query: 156 GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215
GQLG GD P K+ +F + +A G H+ + +D +YG+G G+ G LG+
Sbjct: 139 GQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED---GDLYGWGWGRYGNLGL 195
Query: 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR----GFNSTSD--V 269
R V + G + +V S + S + Y W + G D +
Sbjct: 196 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 255
Query: 270 NCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEK 329
G+ H + LT DG++ G + G + + P+ V
Sbjct: 256 PHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 314
Query: 330 VSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVN 383
D KV+Q++ G H+ VTE + WG G +GQLG+G + D+ PK++
Sbjct: 315 ----DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V SWG +GQLG G D A G H A+T G ++
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED-----GDLY 183
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
WG G G LG G+ D L P+ VT G + ++ ++ GW H+ VS SG L+T G
Sbjct: 184 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSM--VACGWRHTISVSYSGALYTYGWSK 241
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+GQLGHGD H P K+ + N + QI+ G RH++ L D ++YG+G K GQ+G
Sbjct: 242 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSD---GKLYGWGWNKFGQVG 298
Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264
V + + S QV D ++V +S + A++ +++ WGRG N
Sbjct: 299 VGNN-LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 60/287 (20%)
Query: 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS 190
ISAG +HS + + + G G GQLGHGD SP ++S+ + + CG H+
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAAL 250
+ + G +VY +G G G+LG LP LH I I I+ A+
Sbjct: 69 VAYSQS--GMEVYSWGWGDFGRLGHGNSSDLFTPLP--IKALHGIRIKQIACGDSHCLAV 124
Query: 251 SAEGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGM 310
+ EG + +WGR N L LG + +
Sbjct: 125 TMEGEVQSWGRNQNGQ----------------------------------LGLGDTEDSL 150
Query: 311 LSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGL 370
+ P+++ + +G+++ +AAGAEH+A VTE+ + WGWG +G LGL
Sbjct: 151 V--PQKIQA-------------FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL 195
Query: 371 GNTCDQIHP-KVVNLGDEFQN------RDTQLEVFCGSGFTYAISRH 410
G+ D++ P +V + G E + R T + G+ +TY S++
Sbjct: 196 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 337 KVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLE 396
KV+ I+AGA HS + + +WG GE GQLG G+ D+ P ++ D Q +
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ----IVS 60
Query: 397 VFCGSGFTYAISR 409
V CG+ T A S+
Sbjct: 61 VTCGADHTVAYSQ 73
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 161/348 (46%), Gaps = 34/348 (9%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ G +H +AL S G V SWGRG GQLGHG+ D P ++ DGH+ I ++
Sbjct: 22 SAGASHSVALLS-----GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ--IVSVT 74
Query: 133 AGWNHSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL 191
G +H+ S SG +++ G G FG+LGHG+ +P+ + + + QIACG H L
Sbjct: 75 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 134
Query: 192 VLLKDCLGNQVYGFGSGKRGQLGV--SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAA 249
+ + +V +G + GQLG+ ++D + +PQ I I ++A + +AA
Sbjct: 135 AV---TMEGEVQSWGRNQNGQLGLGDTEDSL----VPQKIQAFEGIRIKMVAAGAEHTAA 187
Query: 250 LSAEGHLYTWG------RGFNSTSD--VNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVL 301
++ +G LY WG G +D V GW H + ++ G +
Sbjct: 188 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 247
Query: 302 MLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWG 361
G S +G L + P K+ L + QI+ G H+ +T + + WG
Sbjct: 248 TYGWSKYGQLGHGDLEDHLIP-----HKLEALSNSFISQISGGWRHTMALTSDGKLYGWG 302
Query: 362 WGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISR 409
W + GQ+G+GN DQ P V F + ++V CG T A++
Sbjct: 303 WNKFGQVGVGNNLDQCSPVQV----RFPDDQKVVQVSCGWRHTLAVTE 346
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 147/354 (41%), Gaps = 20/354 (5%)
Query: 36 VWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFS 95
V SWG G DGQLG G D CG H +A + G +V+S
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQS----GMEVYS 92
Query: 96 WGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTF 155
WG G G+LGHG D P P+ G R I I+ G +H V+ G + + G
Sbjct: 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIR--IKQIACGDSHCLAVTMEGEVQSWGRNQN 150
Query: 156 GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215
GQLG GD P K+ +F + +A G H+ + +D +YG+G G+ G LG+
Sbjct: 151 GQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED---GDLYGWGWGRYGNLGL 207
Query: 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR----GFNSTSD--V 269
R V + G + +V S + S + Y W + G D +
Sbjct: 208 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267
Query: 270 NCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEK 329
GW H + LT DG++ G + G + + P+ V
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP- 326
Query: 330 VSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVN 383
D KV+Q++ G H+ VTE + WG G +GQLG+G + D+ PK++
Sbjct: 327 ----DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 376
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V SWG +GQLG G D A G H A+T G ++
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED-----GDLY 195
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
WG G G LG G+ D L P+ VT G + ++ ++ GW H+ VS SG L+T G
Sbjct: 196 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSM--VACGWRHTISVSYSGALYTYGWSK 253
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+GQLGHGD H P K+ + N + QI+ G RH++ L D ++YG+G K GQ+G
Sbjct: 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD---GKLYGWGWNKFGQVG 310
Query: 215 VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFN 264
V + + S QV D ++V +S + A++ +++ WGRG N
Sbjct: 311 VGNN-LDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 130/300 (43%), Gaps = 20/300 (6%)
Query: 31 QQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIG 90
Q ++V+SWG G G+LG G D ACG +H LA+T +
Sbjct: 85 QSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT-----ME 139
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
G+V SWGR +GQLG G+ D+L P+ + F+G R I ++AG H+ V++ G L+
Sbjct: 140 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR--IKMVAAGAEHTAAVTEDGDLYGW 197
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
G G +G LG GD P +V+S + + +ACG RH++ + +Y +G K
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV---SYSGALYTYGWSKY 254
Query: 211 GQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR--------G 262
GQLG + +P L + I IS + AL+++G LY WG G
Sbjct: 255 GQLG--HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312
Query: 263 FNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRP 322
N GW H L +T V G +G L E V P
Sbjct: 313 NNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 372
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 60/287 (20%)
Query: 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS 190
ISAG +HS + + + G G GQLGHGD SP ++S+ + + CG H+
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAAL 250
+ + G +VY +G G G+LG LP LH I I I+ A+
Sbjct: 81 VAYSQS--GMEVYSWGWGDFGRLGHGNSSDLFTPLP--IKALHGIRIKQIACGDSHCLAV 136
Query: 251 SAEGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGM 310
+ EG + +WGR N L LG + +
Sbjct: 137 TMEGEVQSWGRNQNGQ----------------------------------LGLGDTEDSL 162
Query: 311 LSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGL 370
+ P+++ + +G+++ +AAGAEH+A VTE+ + WGWG +G LGL
Sbjct: 163 V--PQKIQA-------------FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL 207
Query: 371 GNTCDQIHP-KVVNLGDEFQN------RDTQLEVFCGSGFTYAISRH 410
G+ D++ P +V + G E + R T + G+ +TY S++
Sbjct: 208 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 337 KVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLE 396
KV+ I+AGA HS + + +WG GE GQLG G+ D+ P ++ D Q +
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ----IVS 72
Query: 397 VFCGSGFTYAISR 409
V CG+ T A S+
Sbjct: 73 VTCGADHTVAYSQ 85
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 135/336 (40%), Gaps = 67/336 (19%)
Query: 75 GGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG 134
GG H LAL+S G+V+SWG G+LGHG P+ + G + ++AG
Sbjct: 115 GGKHCLALSSE-----GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRG--IEVVDVAAG 167
Query: 135 WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGM--RHSLV 192
HS V+ +G L+T G G +G+LGH D P V + V IACG +L
Sbjct: 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLC 227
Query: 193 LLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSA 252
L D + V+ +G G G+LG + +P L + +V + S AL+
Sbjct: 228 LTDD---DTVWSWGDGDYGKLG--RGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTK 282
Query: 253 EGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLS 312
G +YTWG+G D L G H
Sbjct: 283 SGAVYTWGKG----------------------------------DYHRLGHGSDDH---- 304
Query: 313 DPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGN 372
RP +V L G KVI IA G+ H TE+ + TWG + GQLG G
Sbjct: 305 ------VRRP-----RQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 353
Query: 373 TCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAIS 408
T P++V Q + V CGS T A S
Sbjct: 354 TNAIQRPRLVA---ALQGKKVN-RVACGSAHTLAWS 385
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 12/227 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V+SWG DG+LG G A GGAH +T+ G ++
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAA-----GDLY 181
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154
+WG+G G+LGH + D L PK V GHR +G + ++D +++ GDG
Sbjct: 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241
Query: 155 FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214
+G+LG G P+K+ S V ++ CG + S+ L K VY +G G +LG
Sbjct: 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKS---GAVYTWGKGDYHRLG 298
Query: 215 -VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWG 260
S D +R P+ GL +++ I+ + +G +YTWG
Sbjct: 299 HGSDDHVRR---PRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWG 342
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 128/305 (41%), Gaps = 24/305 (7%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
G ++ WG GQLG E P P R + G V+ G L+
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLR--PVQLIGGEQTLFAVTADGKLYAT 77
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIAC--GMRHSLVLLKDCLGNQVYGFGSG 208
G G G+LG G S S+P + S + + ++A G +H L L + +VY +G
Sbjct: 78 GYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE---GEVYSWGEA 134
Query: 209 KRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNST-- 266
+ G+LG P+V L IE+V ++A G SA ++A G LYTWG+G
Sbjct: 135 EDGKLG--HGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192
Query: 267 -SDVNCXXXXXXXXXXXXXXL-------GWNHVLVLTGDGEVLMLGGSHHGMLSDPERVS 318
SD + G L LT D V G +G L
Sbjct: 193 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 252
Query: 319 STRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIH 378
P+ K+ +L G+ V+++ G++ S +T++ A+ TWG G++ +LG G+
Sbjct: 253 CKVPM-----KIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR 307
Query: 379 PKVVN 383
P+ V
Sbjct: 308 PRQVQ 312
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 25/213 (11%)
Query: 202 VYGFGSGKRGQLG-VSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSA-ALSAEGHLYTW 259
+YG+G RGQLG + +++ + + L ++++G G+++ A++A+G LY
Sbjct: 22 IYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG----GEQTLFAVTADGKLYAT 77
Query: 260 G------RGFNSTSDVNCXXXXXXXXXXXXXXLGWN----HVLVLTGDGEVLMLGGSHHG 309
G G T V+ + N H L L+ +GEV G + G
Sbjct: 78 GYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDG 137
Query: 310 MLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLG 369
L R RP + +L G++V+ +AAG HSA VT + TWG G +G+LG
Sbjct: 138 KLGHGNRSPCDRP-----RVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192
Query: 370 LGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSG 402
++ DQ+ PK+V E +++ CGSG
Sbjct: 193 HSDSEDQLKPKLV----EALQGHRVVDIACGSG 221
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 127/321 (39%), Gaps = 50/321 (15%)
Query: 91 GKVFSWG--RGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLF 148
G+V++WG R + G LG + + P +Y I ++ G +H F+ + G +F
Sbjct: 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226
Query: 149 TCGDGTFGQLGHGDY-RSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGS 207
G+G QLG R + F ++V IA G H L KD N++ +G
Sbjct: 227 AWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKD---NKLVSWGL 283
Query: 208 GKRGQLGVSKDRIRS--VSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNS 265
+ GQ GVS+D V+ P+ ++ I I+A S LS +G LY+ GR
Sbjct: 284 NQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR---- 339
Query: 266 TSDVNCXXXXXXXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSV 325
+G + D HG + PL
Sbjct: 340 ---------------LDMFEVG------IPKDNLPEYTYKDVHGK-------ARAVPLPT 371
Query: 326 ALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCD--QIHPKVVN 383
L V K +AAG+ HS V +N +WG+GE +GLG D ++ ++ N
Sbjct: 372 KLNNVP-----KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKN 426
Query: 384 LGDEFQNRDTQLEVFCGSGFT 404
+ N + V CG F+
Sbjct: 427 TATQDHN---IILVGCGGQFS 444
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 139/398 (34%), Gaps = 106/398 (26%)
Query: 17 INNAKPKIXXXXXXQQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXX-----XXXXXXXXX 71
I NA+ Q + ++ WG G+ +LG G L
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 72 XACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHG------------------------ 107
A GG H LAL S+V +SWG G LG
Sbjct: 72 FAVGGMHTLALDEESNV-----WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 108 ---EMVDALYPKP--VTFFDGHRYTITHISAGWNHSGFVSDSGCL-----FTCGDGTFGQ 157
E A P+ +GH+ + ++A N S + +G + F C +G G
Sbjct: 127 NELESTPAKIPRESFPPLAEGHK--VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILG- 183
Query: 158 LGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVS- 216
+ +P KV +F N+ Q+A G H L L ++ + V+ +G+G++ QLG
Sbjct: 184 FYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM---VFAWGNGQQNQLGRKV 240
Query: 217 KDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCXXXXX 276
+R R +L GL ++ +
Sbjct: 241 MERFRLKTLDPRPFGLRHVKYIAS------------------------------------ 264
Query: 277 XXXXXXXXXLGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSS----TRPLSVALEKVSN 332
G NH LT D +++ G + G E V T+P +AL
Sbjct: 265 ----------GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP---- 310
Query: 333 LDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGL 370
D V + IAAG HS +++++ + + G + ++G+
Sbjct: 311 -DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGI 347
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 26/222 (11%)
Query: 36 VWSWGAGTDGQLGTGRLHD-EXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
V++WG G QLG + A G H ALT K+
Sbjct: 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTK-----DNKLV 279
Query: 95 SWGRGSSGQLGHGEMVD--ALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGD 152
SWG GQ G E V+ AL KP I I+AG +HS +S G L++CG
Sbjct: 280 SWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
Query: 153 GTFGQLG--------------HGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCL 198
++G HG R+ P K+++ +A G HS+ + ++ +
Sbjct: 340 LDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV--PKFKSVAAGSHHSVAVAQNGI 397
Query: 199 GNQVYGFGSGKRGQLGVSKDRIR-SVSLPQVTIGLHDIEIVG 239
+GFG LG +D + H+I +VG
Sbjct: 398 AYS-WGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVG 438
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 158/408 (38%), Gaps = 55/408 (13%)
Query: 15 ALINNAKPKIXXXXXXQQVVKVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXAC 74
A+ + K K+ + V + G G GQLG G E A
Sbjct: 8 AIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA- 66
Query: 75 GGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDA--LYPKPVTFFDGHRYTITHIS 132
GG H + L+ G+V+S+G G LG V+ + P V + + +S
Sbjct: 67 GGMHTVCLSK-----SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL----QEKVVQVS 117
Query: 133 AGWNHSGFVSDSGCLFTCG-----DGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGM 187
AG +H+ ++D G +F G +G G L + PV+V ++ V ++A G
Sbjct: 118 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLE--PMKKSMVPVQVQ--LDVPVVKVASGN 173
Query: 188 RHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDR- 246
H ++L D +Y G G++GQLG + + Q L + V + + G R
Sbjct: 174 DHLVMLTAD---GDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRG 230
Query: 247 -------------SAALSAEGHLYTWGR------GFNSTSDVNCXXXXXXXXXXXXXXLG 287
+ A+S EGH+Y +G G T +G
Sbjct: 231 HVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290
Query: 288 WN----HVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAA 343
++ H + + +G+ LG + +G L E ++ +S L V +A
Sbjct: 291 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL----ISRLPAVS--SVAC 344
Query: 344 GAEHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNR 391
GA VT++ + WG G + QLG G D P V +G + +NR
Sbjct: 345 GASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSP-VEMMGKQLENR 391
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GK +S GR G+LG GE + K + ++ ++ G + V+ G +F
Sbjct: 305 GKAYSLGRAEYGRLGLGEGAEE---KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAW 361
Query: 151 GDGTFGQLGHGDYRSHSSPVKV--SSFVNKNVHQIACGMRHSLVLLKD 196
G GT QLG G SPV++ N+ V ++ G +H+++L+KD
Sbjct: 362 GMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 409
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
K +S G G+LG G +E ACG + A+T G+VF
Sbjct: 306 KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV-ACGASVGYAVTKD-----GRVF 359
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHS 138
+WG G++ QLG G+ DA P + + +S+G H+
Sbjct: 360 AWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHT 403
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 151/387 (39%), Gaps = 55/387 (14%)
Query: 36 VWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFS 95
V + G G GQLG G E A GG H + L+ G+V+S
Sbjct: 18 VLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA-GGMHTVCLSKS-----GQVYS 71
Query: 96 WGRGSSGQLGHGEMVDA--LYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCG-- 151
+G G LG V+ + P V + + +SAG +H+ ++D G +F G
Sbjct: 72 FGCNDEGALGRDTSVEGSEMVPGKVEL----QEKVVQVSAGDSHTAALTDDGRVFLWGSF 127
Query: 152 ---DGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSG 208
+G G L + PV+V ++ V ++A G H ++L D +Y G G
Sbjct: 128 RDNNGVIGLLE--PMKKSMVPVQVQ--LDVPVVKVASGNDHLVMLTAD---GDLYTLGCG 180
Query: 209 KRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDR--------------SAALSAEG 254
++GQLG + + Q L + V + + G R + A+S EG
Sbjct: 181 EQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG 240
Query: 255 HLYTWGR------GFNSTSDVNCXXXXXXXXXXXXXXLGWN----HVLVLTGDGEVLMLG 304
H+Y +G G T +G++ H + + +G+ LG
Sbjct: 241 HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLG 300
Query: 305 GSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGE 364
+ +G L E ++ +S L V +A GA VT++ + WG G
Sbjct: 301 RAEYGRLGLGEGAEEKSIPTL----ISRLPAVS--SVACGASVGYAVTKDGRVFAWGMGT 354
Query: 365 HGQLGLGNTCDQIHPKVVNLGDEFQNR 391
+ QLG G D P V +G + +NR
Sbjct: 355 NYQLGTGQDEDAWSP-VEMMGKQLENR 380
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 107/268 (39%), Gaps = 32/268 (11%)
Query: 136 NHSGFVSDSGCLFTCGDGTFGQLGHGD-YRSHSSPVKVSSFVNKNVHQIACGMRHSLVLL 194
+H ++ G + T G G GQLG G+ P VS + ++V Q G H++ L
Sbjct: 7 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGMHTVCLS 64
Query: 195 KDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIE--IVGISANGDRSAALSA 252
K QVY FG G LG R SV ++ G +++ +V +SA +AAL+
Sbjct: 65 KS---GQVYSFGCNDEGALG----RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTD 117
Query: 253 EGHLYTWGRGFNSTSDVNCXXXXXXXXXXXXXXL---------GWNHVLVLTGDGEVLML 303
+G ++ WG ++ + L G +H+++LT DG++ L
Sbjct: 118 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTL 177
Query: 304 GGSHHGMLSDPERVSSTR-----------PLSVALEKVSNLDGVKVIQIAAGAEHSAVVT 352
G G L + + R P V L+ + V+ GA + ++
Sbjct: 178 GCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS 237
Query: 353 ENRAIMTWGWGEHGQLGLGNTCDQIHPK 380
+ +G + QLG T P+
Sbjct: 238 HEGHVYGFGLSNYHQLGTPGTESCFIPQ 265
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 13/175 (7%)
Query: 91 GKVFSWGRGSSGQLGHGE-MVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFT 149
G V + G+G GQLG GE +++ P V+ + + AG H+ +S SG +++
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPE----DVVQAEAGGMHTVCLSKSGQVYS 71
Query: 150 CGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGK 209
G G LG S V + + V Q++ G H+ L D +V+ +GS +
Sbjct: 72 FGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDD---GRVFLWGSFR 128
Query: 210 --RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRG 262
G +G+ + +S+ QV + D+ +V +++ D L+A+G LYT G G
Sbjct: 129 DNNGVIGLLEPMKKSMVPVQVQL---DVPVVKVASGNDHLVMLTADGDLYTLGCG 180
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GK +S GR G+LG GE + K + ++ ++ G + V+ G +F
Sbjct: 294 GKAYSLGRAEYGRLGLGEGAEE---KSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAW 350
Query: 151 GDGTFGQLGHGDYRSHSSPVKV--SSFVNKNVHQIACGMRHSLVLLKD 196
G GT QLG G SPV++ N+ V ++ G +H+++L+KD
Sbjct: 351 GMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 398
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
K +S G G+LG G +E ACG + A+T G+VF
Sbjct: 295 KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV-ACGASVGYAVTKD-----GRVF 348
Query: 95 SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHS 138
+WG G++ QLG G+ DA P + + +S+G H+
Sbjct: 349 AWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHT 392
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 347 HSAVVTENRAIMTWGWGEHGQLGLG-NTCDQIHPKVVNLGDE 387
H + TE ++T G G+ GQLGLG N ++ P +V++ ++
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED 49
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 145 GCLFTCGDGTFGQLGHGD---YRSHSSPVK-VSSFVNKNVHQIACGMRHSLVLLKDCLGN 200
G + CG+G GQLG G+ R SPV + V+ I+ G H+LVL K
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVD-----ISAGGMHNLVLTKS---G 94
Query: 201 QVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVG----ISANGDRSAALSAEGHL 256
+Y FG G LG S S P + I++ G ISA SA L +G +
Sbjct: 95 DIYSFGCNDEGALGRDTSEDGSESKPDL------IDLPGKALCISAGDSHSACLLEDGRV 148
Query: 257 YTWGRGFNS------TSDVNCXXXXXXXXXXXXXXL--GWNHVLVLTGDGEVLMLGGSHH 308
+ WG +S T D N + G +H+++LT G+V +G +
Sbjct: 149 FAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQ 208
Query: 309 GML 311
G L
Sbjct: 209 GQL 211
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 97/246 (39%), Gaps = 31/246 (12%)
Query: 35 KVWSWGAGTDGQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVF 94
+V++WG+ D G D A G H++ LT+ GKVF
Sbjct: 147 RVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTT-----AGKVF 201
Query: 95 SWGRGSSGQLGH-------GE----MVDALYPKPVTFFDGHRYTITHISAGW--NHSGFV 141
+ G GQLG GE D L P + + A W N+ F+
Sbjct: 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF-----EAIWATNYCTFM 256
Query: 142 SDSG--CLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLG 199
+S ++ G F QL H + + + + K++ IA G H+++L D L
Sbjct: 257 RESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL-KDIRHIAGGQHHTVILTTD-LK 314
Query: 200 NQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTW 259
V G R LG KD V P + L + +IV + S A++ +G LY+W
Sbjct: 315 CSVVGRPEYGRLGLGDVKD---VVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSW 370
Query: 260 GRGFNS 265
G G N+
Sbjct: 371 GSGVNN 376
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 126/330 (38%), Gaps = 38/330 (11%)
Query: 73 ACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHIS 132
+ GG H L LT G ++S+G G LG D KP D + IS
Sbjct: 81 SAGGMHNLVLTK-----SGDIYSFGCNDEGALGRDTSEDGSESKP-DLIDLPGKALC-IS 133
Query: 133 AGWNHSGFVSDSGCLFTCGD--GTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHS 190
AG +HS + + G +F G + G +G + +P+ + IA G H
Sbjct: 134 AGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHL 191
Query: 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDR---------IRSVSLPQVTIGLHDIEIVGIS 241
++L +V+ G ++GQLG +R R + P I I
Sbjct: 192 VIL---TTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIW 248
Query: 242 ANGDRSAALSAEGHLYTWGRGFNSTS---------DVNCXXXXXXXXXXXXXXLGWNHVL 292
A + ++ + W G N+ + G +H +
Sbjct: 249 ATNYCTFMRESQTQVI-WATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTV 307
Query: 293 VLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVT 352
+LT D + ++G +G L + V ++K++ K++ + G S VT
Sbjct: 308 ILTTDLKCSVVGRPEYGRLGLGD-VKDVVEKPTIVKKLTE----KIVSVGCGEVCSYAVT 362
Query: 353 ENRAIMTWGWGEHGQLGLGNTCDQIHPKVV 382
+ + +WG G + QLG+G+ D++ P VV
Sbjct: 363 IDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 21/187 (11%)
Query: 80 LALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSG 139
L L +V+G V G G GQLG GE D L K ++ G + ISAG H+
Sbjct: 33 LELPKRRTVLG-NVLVCGNGDVGQLGLGE--DILERKRLSPVAGIPDAV-DISAGGMHNL 88
Query: 140 FVSDSGCLFTCGDGTFGQLGHGDYR--SHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDC 197
++ SG +++ G G LG S S P + + I+ G HS LL+D
Sbjct: 89 VLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID--LPGKALCISAGDSHSACLLED- 145
Query: 198 LGNQVYGFGSGK--RGQLGVSKD--RIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAE 253
+V+ +GS + G +G++ D + + L + T+ I++ D L+
Sbjct: 146 --GRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV------CCSIASGADHLVILTTA 197
Query: 254 GHLYTWG 260
G ++T G
Sbjct: 198 GKVFTVG 204
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 45 GQLGTGRLHDEXXXXXXXXXXXXXXXXXACGGAHVLALTSPSSVIGGKVFSWGRGSSGQL 104
G+LG G + D CG A+T I GK++SWG G + QL
Sbjct: 324 GRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVT-----IDGKLYSWGSGVNNQL 378
Query: 105 GHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFV 141
G G+ D L P V + + S G H+ F+
Sbjct: 379 GVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 31/134 (23%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GKV +WG S GQ V A VT DG YT + +G +
Sbjct: 122 GKVIAWGDDSDGQT----TVPAEAQSGVTALDGGVYTALAVK-----------NGGVIAW 166
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
GD FGQ V + V +A G+ HSL LKD +V +G +
Sbjct: 167 GDNYFGQ------------TTVPAEAQSGVDDVAGGIFHSLA-LKD---GKVIAWGDNRY 210
Query: 211 GQLGVSKDRIRSVS 224
Q V + + VS
Sbjct: 211 KQTTVPTEALSGVS 224
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 31/134 (23%)
Query: 91 GKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTC 150
GKV +WG S GQ V A VT DG YT + +G +
Sbjct: 120 GKVIAWGDDSDGQT----TVPAEAQSGVTALDGGVYTALAVK-----------NGGVIAW 164
Query: 151 GDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210
GD FGQ V + V +A G+ HSL LKD +V +G +
Sbjct: 165 GDNYFGQ------------TTVPAEAQSGVDDVAGGIFHSLA-LKD---GKVIAWGDNRY 208
Query: 211 GQLGVSKDRIRSVS 224
Q V + + VS
Sbjct: 209 KQTTVPTEALSGVS 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,392,351
Number of Sequences: 62578
Number of extensions: 501109
Number of successful extensions: 1191
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 93
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)