Query 014875
Match_columns 416
No_of_seqs 312 out of 1975
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 2.7E-53 5.8E-58 390.2 31.2 369 24-410 58-465 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 5.3E-45 1.1E-49 335.5 26.2 318 76-411 58-411 (476)
3 KOG1427 Uncharacterized conser 100.0 7.9E-45 1.7E-49 313.7 22.4 358 26-410 12-399 (443)
4 KOG1427 Uncharacterized conser 100.0 7.2E-43 1.6E-47 301.5 16.2 309 28-354 71-399 (443)
5 KOG0783 Uncharacterized conser 100.0 3.5E-31 7.6E-36 255.5 15.1 296 32-356 140-451 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.2E-26 2.5E-31 224.5 12.8 266 90-364 141-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.1E-22 2.5E-27 204.3 21.7 298 67-408 479-893 (3738)
8 KOG1428 Inhibitor of type V ad 99.8 1.2E-19 2.7E-24 182.8 17.9 260 126-411 479-838 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 1.9E-12 4.2E-17 86.5 4.1 50 144-193 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 4.9E-12 1.1E-16 84.5 5.8 50 90-141 1-51 (51)
11 KOG0941 E3 ubiquitin protein l 99.2 9E-14 1.9E-18 137.1 -8.9 196 169-415 5-201 (850)
12 PF13540 RCC1_2: Regulator of 99.2 2.5E-11 5.3E-16 70.5 4.1 30 338-367 1-30 (30)
13 PF13540 RCC1_2: Regulator of 99.1 7.8E-11 1.7E-15 68.4 4.3 30 180-212 1-30 (30)
14 KOG0941 E3 ubiquitin protein l 99.1 1E-12 2.2E-17 129.7 -7.9 145 58-211 5-156 (850)
15 PF11725 AvrE: Pathogenicity f 95.5 0.25 5.4E-06 54.5 13.5 290 68-411 490-815 (1774)
16 PF11725 AvrE: Pathogenicity f 92.3 0.99 2.2E-05 50.1 10.2 110 228-355 696-815 (1774)
17 KOG3669 Uncharacterized conser 91.5 3.9 8.4E-05 40.5 12.2 105 242-359 190-298 (705)
18 KOG0646 WD40 repeat protein [G 91.0 12 0.00027 36.0 14.8 48 90-151 102-151 (476)
19 KOG0315 G-protein beta subunit 89.3 15 0.00033 32.7 20.0 61 243-306 135-197 (311)
20 KOG3669 Uncharacterized conser 88.5 26 0.00056 35.1 15.1 70 68-150 228-299 (705)
21 KOG0943 Predicted ubiquitin-pr 87.8 0.05 1.1E-06 57.4 -3.5 129 178-309 374-508 (3015)
22 KOG0943 Predicted ubiquitin-pr 86.5 0.072 1.6E-06 56.3 -3.2 130 125-262 373-505 (3015)
23 KOG0646 WD40 repeat protein [G 85.2 38 0.00083 32.8 17.0 157 128-305 84-246 (476)
24 PF07569 Hira: TUP1-like enhan 80.5 7.4 0.00016 34.4 7.3 29 126-154 13-41 (219)
25 PHA02713 hypothetical protein; 77.7 88 0.0019 32.0 15.5 14 293-306 459-472 (557)
26 PHA03098 kelch-like protein; P 77.5 74 0.0016 32.2 14.5 16 136-152 382-397 (534)
27 KOG4441 Proteins containing BT 76.8 94 0.002 31.9 16.4 104 246-362 420-530 (571)
28 PF07569 Hira: TUP1-like enhan 73.9 21 0.00045 31.5 8.2 29 67-100 13-41 (219)
29 smart00706 TECPR Beta propelle 72.7 8.5 0.00018 22.6 3.8 24 127-150 9-33 (35)
30 smart00706 TECPR Beta propelle 71.7 9.4 0.0002 22.4 3.9 24 337-360 9-33 (35)
31 PF04841 Vps16_N: Vps16, N-ter 71.6 1E+02 0.0023 30.1 18.7 154 127-304 82-244 (410)
32 PLN02153 epithiospecifier prot 69.9 1E+02 0.0022 29.1 21.6 18 187-208 129-146 (341)
33 KOG0315 G-protein beta subunit 67.5 94 0.002 27.9 21.4 122 113-263 71-198 (311)
34 PHA03098 kelch-like protein; P 67.3 1.5E+02 0.0032 30.1 15.7 17 188-208 335-351 (534)
35 TIGR03548 mutarot_permut cycli 66.6 1.1E+02 0.0024 28.5 12.8 18 347-364 216-233 (323)
36 KOG0291 WD40-repeat-containing 66.1 1.8E+02 0.0038 30.5 22.1 34 280-313 522-557 (893)
37 TIGR03300 assembly_YfgL outer 65.7 95 0.0021 29.7 11.7 57 244-303 320-376 (377)
38 KOG4441 Proteins containing BT 65.3 1.7E+02 0.0037 30.1 14.0 56 249-305 471-530 (571)
39 PHA02713 hypothetical protein; 58.7 1.2E+02 0.0027 31.0 11.4 15 248-262 346-360 (557)
40 KOG0291 WD40-repeat-containing 58.3 2.4E+02 0.0053 29.6 16.9 113 138-266 312-426 (893)
41 TIGR01063 gyrA DNA gyrase, A s 57.7 2.7E+02 0.0059 30.0 17.0 161 185-361 544-716 (800)
42 KOG4693 Uncharacterized conser 56.9 1.3E+02 0.0027 27.4 9.4 17 76-98 80-96 (392)
43 TIGR02658 TTQ_MADH_Hv methylam 55.0 2E+02 0.0043 27.5 25.0 270 60-364 31-319 (352)
44 KOG1408 WD40 repeat protein [F 54.5 2.8E+02 0.006 29.1 15.1 104 131-261 138-248 (1080)
45 PLN02193 nitrile-specifier pro 53.5 2.4E+02 0.0053 28.1 18.4 17 245-262 271-287 (470)
46 PLN02153 epithiospecifier prot 51.1 2.2E+02 0.0047 26.8 16.1 17 188-208 244-260 (341)
47 PF06739 SBBP: Beta-propeller 50.6 19 0.00041 21.8 2.5 19 245-263 15-33 (38)
48 KOG1274 WD40 repeat protein [G 48.7 3.7E+02 0.0081 28.9 20.7 57 35-98 27-85 (933)
49 COG4257 Vgb Streptogramin lyas 48.7 2.2E+02 0.0048 26.2 10.1 138 134-303 62-205 (353)
50 PRK13979 DNA topoisomerase IV 47.8 4.2E+02 0.0092 29.2 19.6 166 135-313 516-696 (957)
51 PRK05560 DNA gyrase subunit A; 45.9 4.2E+02 0.0091 28.6 16.4 162 185-361 546-719 (805)
52 COG4257 Vgb Streptogramin lyas 44.7 2.5E+02 0.0055 25.8 10.1 139 75-259 62-205 (353)
53 KOG1900 Nuclear pore complex, 43.0 4.4E+02 0.0095 29.8 12.5 162 191-369 93-278 (1311)
54 PF12341 DUF3639: Protein of u 41.7 63 0.0014 18.0 3.9 25 235-259 2-26 (27)
55 KOG0274 Cdc4 and related F-box 41.5 4E+02 0.0087 27.2 17.6 155 114-303 320-479 (537)
56 KOG1034 Transcriptional repres 41.2 76 0.0016 29.6 5.8 59 139-206 323-381 (385)
57 KOG0649 WD40 repeat protein [G 40.8 2.7E+02 0.0059 25.0 11.8 152 131-303 18-183 (325)
58 KOG1900 Nuclear pore complex, 40.3 5.9E+02 0.013 28.8 18.9 196 80-305 93-339 (1311)
59 PHA02790 Kelch-like protein; P 40.2 1.4E+02 0.0031 29.8 8.4 13 30-42 315-327 (480)
60 PRK14131 N-acetylneuraminic ac 40.0 3.1E+02 0.0067 26.3 10.5 18 245-262 131-148 (376)
61 KOG1240 Protein kinase contain 39.7 6E+02 0.013 28.7 14.5 131 117-261 1040-1180(1431)
62 PF03785 Peptidase_C25_C: Pept 39.2 37 0.00081 24.5 2.8 41 271-311 8-49 (81)
63 KOG0278 Serine/threonine kinas 36.7 3.2E+02 0.007 24.7 11.0 25 128-152 146-172 (334)
64 TIGR03300 assembly_YfgL outer 36.5 3.8E+02 0.0083 25.4 13.4 18 288-305 320-337 (377)
65 PF13418 Kelch_4: Galactose ox 34.0 40 0.00087 21.2 2.3 18 345-362 3-20 (49)
66 KOG0278 Serine/threonine kinas 33.3 3.7E+02 0.008 24.3 13.4 38 167-207 134-172 (334)
67 PLN03215 ascorbic acid mannose 32.9 1.8E+02 0.0039 28.0 7.2 61 237-304 162-225 (373)
68 KOG2444 WD40 repeat protein [G 30.5 1.1E+02 0.0024 27.1 4.9 72 283-369 65-138 (238)
69 TIGR03548 mutarot_permut cycli 30.0 4.6E+02 0.0099 24.4 11.5 16 137-152 164-179 (323)
70 PRK11138 outer membrane biogen 28.8 5.3E+02 0.011 24.8 11.5 18 287-304 375-392 (394)
71 PHA02790 Kelch-like protein; P 28.7 2.2E+02 0.0048 28.5 7.6 14 293-306 358-371 (480)
72 PF07312 DUF1459: Protein of u 28.6 35 0.00077 24.3 1.3 11 35-45 57-68 (84)
73 PLN02772 guanylate kinase 28.6 2E+02 0.0044 27.9 6.9 65 187-262 26-95 (398)
74 KOG0293 WD40 repeat-containing 27.7 3E+02 0.0064 26.8 7.5 120 63-212 392-517 (519)
75 PF03785 Peptidase_C25_C: Pept 27.4 1E+02 0.0022 22.3 3.5 31 128-158 18-49 (81)
76 KOG1408 WD40 repeat protein [F 27.2 7.6E+02 0.017 26.1 14.5 26 126-151 218-247 (1080)
77 PF01436 NHL: NHL repeat; Int 27.1 1.2E+02 0.0025 16.7 3.1 17 347-363 5-21 (28)
78 KOG1034 Transcriptional repres 26.9 1.8E+02 0.004 27.2 5.9 58 248-305 323-382 (385)
79 PRK02529 petN cytochrome b6-f 25.4 70 0.0015 18.5 1.9 13 357-369 20-32 (33)
80 PF11399 DUF3192: Protein of u 25.2 49 0.0011 25.1 1.7 27 341-367 75-101 (102)
81 PLN02193 nitrile-specifier pro 24.7 7E+02 0.015 24.8 18.6 18 187-208 270-287 (470)
82 PF07646 Kelch_2: Kelch motif; 24.3 86 0.0019 19.7 2.6 17 188-208 4-20 (49)
83 cd00200 WD40 WD40 domain, foun 23.7 4.7E+02 0.01 22.4 27.3 224 68-360 11-246 (289)
84 PLN03215 ascorbic acid mannose 23.6 3E+02 0.0065 26.5 7.0 58 72-151 165-225 (373)
85 PF13854 Kelch_5: Kelch motif 23.5 96 0.0021 18.9 2.6 19 187-209 6-24 (42)
86 TIGR01063 gyrA DNA gyrase, A s 23.3 9.7E+02 0.021 25.9 21.6 210 132-367 543-773 (800)
87 PF13964 Kelch_6: Kelch motif 22.0 94 0.002 19.6 2.4 18 188-209 4-21 (50)
88 KOG1274 WD40 repeat protein [G 21.9 1E+03 0.022 25.8 21.0 69 75-152 14-85 (933)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.7e-53 Score=390.17 Aligned_cols=369 Identities=26% Similarity=0.465 Sum_probs=288.3
Q ss_pred chhhhhceeecEEEEEeCCCCCccccCCCCCC-cCCeeeecC--CCCCeEEEEeCCcceEEeeCCCcccCCeEEEEecCC
Q 014875 24 IEEEEEEQQVVKVWSWGAGTDGQLGTGRLHDE-LSPQLLNLS--SLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGS 100 (416)
Q Consensus 24 ~~~~~~~~~~g~v~~wG~n~~GqLG~g~~~~~-~~p~~i~~~--~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~ 100 (416)
.+.....++...||+||+|...|||+|..... ..|++..+. +...|++++||+.|+++|++ ||+||+||.|.
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~-----Dg~lyswG~N~ 132 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDH-----DGNLYSWGDND 132 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecC-----CCCEEEeccCc
Confidence 33445778889999999999999999987655 688888776 55699999999999999999 99999999999
Q ss_pred CCccCCCCC-------------C---CeeceeEeeecCC--CcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCC
Q 014875 101 SGQLGHGEM-------------V---DALYPKPVTFFDG--HRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGD 162 (416)
Q Consensus 101 ~gqlG~~~~-------------~---~~~~p~~v~~~~~--~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~ 162 (416)
.|+||.... . ...+|..+..... ...++++++||++++++|+++|+||.||....+.++.+.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~ 212 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGS 212 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccc
Confidence 999998761 1 2566777775211 114799999999999999999999999999999988885
Q ss_pred CCCccc----ceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccC-CCCE
Q 014875 163 YRSHSS----PVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLH-DIEI 237 (416)
Q Consensus 163 ~~~~~~----p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~-~~~i 237 (416)
+.+... ++++... ...|+++++|.+|.++|++ +|+||.||.|..||||... .+....+..+..+. -..|
T Consensus 213 ~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~---~G~vy~~Gs~qkgqlG~~~--~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 213 YKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTN---EGKVYGWGSNQKGQLGRPT--SERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred ccccccceeeeeeeecC-chheeeeccCCceEEEEec---CCcEEEecCCcccccCCch--hhhcccccccCChhhhhhh
Confidence 443322 3333322 3579999999999999999 9999999999999999983 33333333333332 2347
Q ss_pred EEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCC----------Ccee--cCCCCCeeEEEecCceEEEEecCCCEEEeeC
Q 014875 238 VGISANGDRSAALSAEGHLYTWGRGFNSTSDVN----------CPQS--LPSSLSFSQAALGWNHVLVLTGDGEVLMLGG 305 (416)
Q Consensus 238 ~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~----------~p~~--~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~ 305 (416)
..|+||.+|++||+++|++|+||.|.++|++.. .|.. ++....|..|++|..|+++|..+|.||+||+
T Consensus 287 ~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr 366 (476)
T COG5184 287 KYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366 (476)
T ss_pred hhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence 899999999999999999999999999998865 2222 2345569999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCCeeEEEECCCCEEEEECCCCCCccCCCCCC-ccCceEEec
Q 014875 306 SHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNTCD-QIHPKVVNL 384 (416)
Q Consensus 306 n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~vy~wG~n~~gqLG~g~~~~-~~~p~~v~~ 384 (416)
++.+|||.++..... ...+.++.. ..++..|+||..|+++.+.+|.||+||+|++||||.|+... ...|+.++-
T Consensus 367 ~~~~qlg~~~~~~~~---~~~~~~ls~--~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~ 441 (476)
T COG5184 367 GDRGQLGIQEEITID---VSTPTKLSV--AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ 441 (476)
T ss_pred CccccccCcccceee---cCCcccccc--ccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccc
Confidence 999999998754222 222233322 23799999999999999999999999999999999997654 457777773
Q ss_pred CCcccCCCceEEEeecCCeEEEEccC
Q 014875 385 GDEFQNRDTQLEVFCGSGFTYAISRH 410 (416)
Q Consensus 385 ~~~~~~~~~v~~v~~G~~~t~~i~~~ 410 (416)
+. + ....++..-||.+++++....
T Consensus 442 ~~-~-~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 442 PL-L-SGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred cc-c-CCCceEEeccCcceEEEecch
Confidence 11 1 223566676676666665543
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.3e-45 Score=335.46 Aligned_cols=318 Identities=27% Similarity=0.396 Sum_probs=257.2
Q ss_pred CcceEEeeCCCcccCCeEEEEecCCCCccCCCCCCCe-eceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCC
Q 014875 76 GAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDA-LYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGT 154 (416)
Q Consensus 76 ~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~-~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~ 154 (416)
..|...++. -..||+||.|...|||++..... ..|++..+..-....|++++||..|+++|++||+||+||.|.
T Consensus 58 ~~~~~~~~~-----~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 58 NKHTHLLVK-----MASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred ccchhhhhh-----eeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 455557777 78999999999999999987754 889988877422378999999999999999999999999999
Q ss_pred CccccCCCC----------------CCcccceEeeec----CCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCC
Q 014875 155 FGQLGHGDY----------------RSHSSPVKVSSF----VNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLG 214 (416)
Q Consensus 155 ~gqlG~~~~----------------~~~~~p~~v~~~----~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG 214 (416)
.|+||.... ....+|.+|... ...++++++||+++++++++ +|+||.||....+.++
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~---~G~V~~~gt~r~~e~~ 209 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTA---DGRVYSWGTFRCGELG 209 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEcc---CCcEEEecCccccccc
Confidence 999997651 124578888762 23479999999999999999 9999999999988888
Q ss_pred CCCCCcc----eeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCCCceec------CC---CCCe
Q 014875 215 VSKDRIR----SVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSL------PS---SLSF 281 (416)
Q Consensus 215 ~~~~~~~----~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~------~~---~~~i 281 (416)
.+..... ...+|.+++ ...|+++++|.+|.++|+++|++|.||++..+|++.+.-..+ +. ...|
T Consensus 210 ~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 210 QGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred cccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence 8742222 335565555 457999999999999999999999999999999986533222 22 2347
Q ss_pred eEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCCeeEEEECCCCEEEEE
Q 014875 282 SQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWG 361 (416)
Q Consensus 282 ~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~vy~wG 361 (416)
+.|+||.+|+++|+++|++|+||.|.+||||.+ ...........+.....+++..|..|++|..|+++|.++|.+|+||
T Consensus 287 ~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~G 365 (476)
T COG5184 287 KYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFG 365 (476)
T ss_pred hhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEec
Confidence 889999999999999999999999999999998 2222222334445555566667999999999999999999999999
Q ss_pred CCCCCCccCCC--CCCccCceEEecCCcccCCCceEEEeecCCeEEEEccCC
Q 014875 362 WGEHGQLGLGN--TCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC 411 (416)
Q Consensus 362 ~n~~gqLG~g~--~~~~~~p~~v~~~~~~~~~~~v~~v~~G~~~t~~i~~~~ 411 (416)
.+..||||..+ +.....|+++. ...++.+++||..|+++.+++.
T Consensus 366 r~~~~qlg~~~~~~~~~~~~~~ls------~~~~~~~v~~gt~~~~~~t~~g 411 (476)
T COG5184 366 RGDRGQLGIQEEITIDVSTPTKLS------VAIKLEQVACGTHHNIARTDDG 411 (476)
T ss_pred CCccccccCcccceeecCCccccc------cccceEEEEecCccceeeccCC
Confidence 99999999998 44555555555 2237899999999999999874
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=7.9e-45 Score=313.66 Aligned_cols=358 Identities=23% Similarity=0.394 Sum_probs=291.2
Q ss_pred hhhhceeecEEEEEeCCCCCccccCCC---CCCcCCeeeecCCCCCeEEEEeC--CcceEEeeCCCcccCCeEEEEecCC
Q 014875 26 EEEEEQQVVKVWSWGAGTDGQLGTGRL---HDELSPQLLNLSSLSSVSMLACG--GAHVLALTSPSSVIGGKVFSWGRGS 100 (416)
Q Consensus 26 ~~~~~~~~g~v~~wG~n~~GqLG~g~~---~~~~~p~~i~~~~~~~i~~ia~G--~~h~~~lt~~~~~~~g~vy~wG~n~ 100 (416)
........|++..+|.-..-+.|-.+. .....|.+..-..+.+|+-|+.| ..|+++|+- +|++|.||.|.
T Consensus 12 ~~s~e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~m-----egk~~~wGRNe 86 (443)
T KOG1427|consen 12 DESSEEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDM-----EGKCYTWGRNE 86 (443)
T ss_pred hhhhhcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEec-----ccceeecccCc
Confidence 344556778999999887777765442 24457777777767789999966 679999999 99999999999
Q ss_pred CCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCCCc-ccceEeeecCCCc
Q 014875 101 SGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSH-SSPVKVSSFVNKN 179 (416)
Q Consensus 101 ~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~-~~p~~v~~~~~~~ 179 (416)
.||||+++......|+.|..+.. .+|++.+||++|+++||++|+||.||.|.+||||++..... .+|.. .......
T Consensus 87 kGQLGhgD~k~~e~Ptvi~gL~~--~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~-~~~~~~~ 163 (443)
T KOG1427|consen 87 KGQLGHGDMKQRERPTVISGLSK--HKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPL-PCVVSDE 163 (443)
T ss_pred cCccCccchhhccCCchhhhhhh--hhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCC-ccccCcc
Confidence 99999999999999999999998 88999999999999999999999999999999999976543 33332 2333467
Q ss_pred eEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcc------------eeecCeEecccCCCCEEEEecCCCeE
Q 014875 180 VHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIR------------SVSLPQVTIGLHDIEIVGISANGDRS 247 (416)
Q Consensus 180 i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~------------~~~~p~~~~~~~~~~i~~i~~g~~~~ 247 (416)
|+.|+||.++++.|.. .+.+..+|..+|||||++.++.. ..+.|..+..+....|++++||.+|+
T Consensus 164 v~~v~cga~ftv~l~~---~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nht 240 (443)
T KOG1427|consen 164 VTNVACGADFTVWLSS---TESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHT 240 (443)
T ss_pred ceeeccccceEEEeec---ccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcce
Confidence 9999999999999999 89999999999999999863221 22346667778888999999999999
Q ss_pred EEEeCCCcEEEeeCCCCCCCCCCCcee------c----CCCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCC
Q 014875 248 AALSAEGHLYTWGRGFNSTSDVNCPQS------L----PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERV 317 (416)
Q Consensus 248 ~~lt~~G~vy~wG~~~~~~~~~~~p~~------~----~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~ 317 (416)
++++++++||.||.+-++.|+...++. + ....--.++.||+..++++.+-|.||.||.+... ++.
T Consensus 241 vavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~----ge~- 315 (443)
T KOG1427|consen 241 VAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN----GED- 315 (443)
T ss_pred eeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC----ccc-
Confidence 999999999999999999998654432 2 1344567899999999999999999999987431 111
Q ss_pred cccCccccceeeeccCCCCcEEEEecCCCeeEEEECCCCEEEEECCCCCCccCCCC--CCccCceEEecCCcccCCCceE
Q 014875 318 SSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGEHGQLGLGNT--CDQIHPKVVNLGDEFQNRDTQL 395 (416)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~vy~wG~n~~gqLG~g~~--~~~~~p~~v~~~~~~~~~~~v~ 395 (416)
-.-|.++..+.+.++..+-|+..|.++ ..|....+||...+|.++-|.. .....|..|+....+ .+.
T Consensus 316 ------~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i----~v~ 384 (443)
T KOG1427|consen 316 ------WMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGI----HVM 384 (443)
T ss_pred ------ccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcce----ecc
Confidence 123556677788899999999998866 6667899999988877665543 345689999988766 789
Q ss_pred EEeecCCeEEEEccC
Q 014875 396 EVFCGSGFTYAISRH 410 (416)
Q Consensus 396 ~v~~G~~~t~~i~~~ 410 (416)
+|+||+.||++|++.
T Consensus 385 ~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 385 GVAMGYSHSMVIVDR 399 (443)
T ss_pred ceeeccceEEEEEcc
Confidence 999999999999875
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=7.2e-43 Score=301.50 Aligned_cols=309 Identities=26% Similarity=0.434 Sum_probs=257.6
Q ss_pred hhceeecEEEEEeCCCCCccccCCCCCCcCCeeeecCCCCCeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCccCCC
Q 014875 28 EEEQQVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHG 107 (416)
Q Consensus 28 ~~~~~~g~v~~wG~n~~GqLG~g~~~~~~~p~~i~~~~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~ 107 (416)
....-+++.|.||.|..||||+++...+..|+.|......+|++.|||.+|+++||+ +|.+|+||.|.+||||++
T Consensus 71 vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltd-----tG~v~afGeNK~GQlGlg 145 (443)
T KOG1427|consen 71 VLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTD-----TGQVLAFGENKYGQLGLG 145 (443)
T ss_pred EEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEec-----CCcEEEeccccccccccc
Confidence 345567999999999999999998888889999998888899999999999999999 999999999999999999
Q ss_pred CCCC-eeceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCC--------------CcccceEe
Q 014875 108 EMVD-ALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYR--------------SHSSPVKV 172 (416)
Q Consensus 108 ~~~~-~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~--------------~~~~p~~v 172 (416)
+... +..|.++-... ..|..|+||..|++.|+..+.|..+|.-.|||||+++.. .++.|..|
T Consensus 146 n~~~~v~s~~~~~~~~---~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i 222 (443)
T KOG1427|consen 146 NAKNEVESTPLPCVVS---DEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 222 (443)
T ss_pred ccccccccCCCccccC---ccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccc
Confidence 8763 44444433333 469999999999999999999999999999999998643 23456667
Q ss_pred eecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEeccc--CCCCEEEEecCCCeEEEE
Q 014875 173 SSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL--HDIEIVGISANGDRSAAL 250 (416)
Q Consensus 173 ~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~--~~~~i~~i~~g~~~~~~l 250 (416)
..+.+..|++++||.+|++++.+ +++||+||...||.||+. ..+....|+++..+ ...--.++.||+.+++.+
T Consensus 223 ~~~dgvqiv~~acg~nhtvavd~---nkrVysWGFGGyGRLGHa--EqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v 297 (443)
T KOG1427|consen 223 ASLDGVQIVKVACGTNHTVAVDK---NKRVYSWGFGGYGRLGHA--EQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNV 297 (443)
T ss_pred ccccceeeEEEeccCcceeeecC---CccEEEeccccccccccc--cchhhHHHHHHHHhcCCCCCCcceeeecccceee
Confidence 77888899999999999999999 999999999999999998 45566778777655 345567889999999999
Q ss_pred eCCCcEEEeeCCCCCCCCCCCceec--CCCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCC-CCCCCCcccCccccce
Q 014875 251 SAEGHLYTWGRGFNSTSDVNCPQSL--PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGML-SDPERVSSTRPLSVAL 327 (416)
Q Consensus 251 t~~G~vy~wG~~~~~~~~~~~p~~~--~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gql-G~~~~~~~~~~~~~~~ 327 (416)
.+-|.||.||.+.......-.|.++ ..+.++..+.++..|.++- .|..+..||...+|.+ |.++... ....|
T Consensus 298 ~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v~-ad~s~i~wg~~~~g~~lggp~~Qk----ss~~P 372 (443)
T KOG1427|consen 298 AEGGQLFMWGKIKNNGEDWMYPKPMMDLSGWNLRWMDSGSMHHFVG-ADSSCISWGHAQYGELLGGPNGQK----SSAAP 372 (443)
T ss_pred cccceeEEeeccccCcccccCCCchhhcCCccCCCcCccceeeeec-ccccccccccccccccccCccccc----cccCc
Confidence 9999999999988776665455444 6778899999999887655 5678999998876655 4444333 23456
Q ss_pred eeeccCCCCcEEEEecCCCeeEEEECC
Q 014875 328 EKVSNLDGVKVIQIAAGAEHSAVVTEN 354 (416)
Q Consensus 328 ~~~~~~~~~~v~~i~~G~~h~~~l~~~ 354 (416)
.+++.+.+.+|.+|++|+.|+++|.++
T Consensus 373 k~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 373 KKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccchhcceeccceeeccceEEEEEcc
Confidence 888888899999999999999998765
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.97 E-value=3.5e-31 Score=255.49 Aligned_cols=296 Identities=23% Similarity=0.353 Sum_probs=233.8
Q ss_pred eecEEEEEeCCCCCccccCCCCCCcCCeeeecCCCC--CeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCccCCCCC
Q 014875 32 QVVKVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLS--SVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEM 109 (416)
Q Consensus 32 ~~g~v~~wG~n~~GqLG~g~~~~~~~p~~i~~~~~~--~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~ 109 (416)
...+||+||.|.+-.||+|...+...|.++.++... -+++|+.+..|++++++ .|+||+||.+..|.||.++.
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~-----kgqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTE-----KGQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred CccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecC-----CCcEEEeccCCCCccCcCcc
Confidence 347899999999999999999999999999987554 57889999999999999 99999999999999999998
Q ss_pred CCeeceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCC-CcccceEeeecC--C-CceEEEEe
Q 014875 110 VDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYR-SHSSPVKVSSFV--N-KNVHQIAC 185 (416)
Q Consensus 110 ~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~-~~~~p~~v~~~~--~-~~i~~i~~ 185 (416)
.....|++|+.+.+ .++.+|++...|+++||++|.||+||.|..+|||..+.. ....|.+|.... + ..|+.|++
T Consensus 215 q~~~iPkrV~gL~g--h~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaA 292 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIG--HKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAA 292 (1267)
T ss_pred cccccccccccccc--cceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhc
Confidence 89999999999888 789999999999999999999999999999999987654 344555554321 1 26999999
Q ss_pred CCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCC
Q 014875 186 GMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNS 265 (416)
Q Consensus 186 G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~ 265 (416)
|..|+++.++ -.||+||.|. ||||+.+ +...+..|+.+..+ ...|..+.|....++++++++.+|++-+-...
T Consensus 293 g~~hsVawt~----~~VY~wGlN~-GQlGi~~-n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~ 365 (1267)
T KOG0783|consen 293 GKSHSVAWTD----TDVYSWGLNN-GQLGISD-NISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQNNSIIAFADYNQV 365 (1267)
T ss_pred ccceeeeeec----ceEEEecccC-ceecCCC-CCceeecchhhccc-ccceEEEEecCccEEEEecCCcEEEEecccce
Confidence 9999999998 8999999986 9999884 57788888766443 35799999999999999999999998663222
Q ss_pred CCCCC----CceecC------CCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCC
Q 014875 266 TSDVN----CPQSLP------SSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDG 335 (416)
Q Consensus 266 ~~~~~----~p~~~~------~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~ 335 (416)
.+..+ ....+. ....+++..+.....+++|+-|+||.|-++..-. ......|.++
T Consensus 366 k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~----------~~c~ftp~r~----- 430 (1267)
T KOG0783|consen 366 KLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR----------TSCKFTPLRI----- 430 (1267)
T ss_pred ecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce----------eeeeccccee-----
Confidence 11110 001110 1134666777788889999999999998654211 1111222222
Q ss_pred CcEEEEecCCCeeEEEECCCC
Q 014875 336 VKVIQIAAGAEHSAVVTENRA 356 (416)
Q Consensus 336 ~~v~~i~~G~~h~~~l~~~g~ 356 (416)
..|.+|+--.+..+++++||.
T Consensus 431 ~~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 431 FEISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred eehhhhhhccceEEEEecCcc
Confidence 246678777788999999993
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1.2e-26 Score=224.46 Aligned_cols=266 Identities=24% Similarity=0.391 Sum_probs=207.3
Q ss_pred CCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccc
Q 014875 90 GGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSP 169 (416)
Q Consensus 90 ~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p 169 (416)
-+.||.||.|....||.++......|.+|.++.....-+.+|+.+.+|+++|++.|+||+||.+.-|.||.|+......|
T Consensus 141 pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iP 220 (1267)
T KOG0783|consen 141 PNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIP 220 (1267)
T ss_pred ccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccccccc
Confidence 68999999999999999999999999999988765567889999999999999999999999999999999999899999
Q ss_pred eEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEeccc--CCC-CEEEEecCCCe
Q 014875 170 VKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL--HDI-EIVGISANGDR 246 (416)
Q Consensus 170 ~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~--~~~-~i~~i~~g~~~ 246 (416)
.+|+.+.+.+|.+|+....|+++||+ +|.||+||.|..+|||..+. ......|..+... ++. .|+.|++|..|
T Consensus 221 krV~gL~gh~~~qisvs~~HslvLT~---~g~Vys~GlN~~hqLG~~~~-~~~~~~p~qI~a~r~kg~~~iIgvaAg~~h 296 (1267)
T KOG0783|consen 221 KRVPGLIGHKVIQISVSHTHSLVLTK---FGSVYSWGLNGSHQLGLSND-ELKKDDPIQITARRIKGFKQIIGVAAGKSH 296 (1267)
T ss_pred cccccccccceEEEEeecceeEEEee---cceEEEeecCcccccCCcCc-hhhcCchhhhhhHhhcchhhhhhhhcccce
Confidence 99999999999999999999999999 99999999999999999843 3334445544432 122 68999999999
Q ss_pred EEEEeCCCcEEEeeCCCCCCCCCC-------Cceec-CCCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCc
Q 014875 247 SAALSAEGHLYTWGRGFNSTSDVN-------CPQSL-PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVS 318 (416)
Q Consensus 247 ~~~lt~~G~vy~wG~~~~~~~~~~-------~p~~~-~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~ 318 (416)
+++-++. .||.||.| .||+|+. .|+.+ +....|..+.|....++++++.+.+|++-.-..--+......
T Consensus 297 sVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~- 373 (1267)
T KOG0783|consen 297 SVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNVDF- 373 (1267)
T ss_pred eeeeecc-eEEEeccc-CceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCcEEEEecccceecCcchhc-
Confidence 9999865 89999996 5676643 34222 456789999999999999999999999876432222111100
Q ss_pred ccCccccceeeeccCCCCcEEEEecCCCeeEEEECCCCEEEEECCC
Q 014875 319 STRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENRAIMTWGWGE 364 (416)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g~vy~wG~n~ 364 (416)
.....+.--+. .+.-.++.+..+....-+++|+-|+||.|-.+.
T Consensus 374 -lks~~V~gg~l-~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 374 -LKSLKVTGGPL-SLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred -cceeEEecCcc-chhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 00000000000 011135566677777788999999999998653
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-22 Score=204.27 Aligned_cols=298 Identities=20% Similarity=0.280 Sum_probs=210.0
Q ss_pred CCeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEe--C
Q 014875 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSD--S 144 (416)
Q Consensus 67 ~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~--~ 144 (416)
..-+++-.+....++-+. +|+||..|... .+|+-....... .+..+ .+|++|+.|-+..+++.- +
T Consensus 479 ~qtv~L~~~RE~A~iqa~-----sGKvYYaGn~t--~~Gl~e~G~nWm--EL~l~----~~IVq~SVG~D~~~~~~~A~~ 545 (3738)
T KOG1428|consen 479 PQTVDLHFTREMAFIQAR-----SGKVYYAGNGT--RFGLFETGNNWM--ELCLP----EPIVQISVGIDTIMFRSGAGH 545 (3738)
T ss_pred chheecccchhhhhhhhc-----CccEEEecCcc--EEeEEccCCceE--EecCC----CceEEEEeccchhheeeccCc
Confidence 466788889999999999 99999999754 344433332221 11122 469999999998888864 4
Q ss_pred CCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEE-EEEeccCCCeEEEeCCCCCCCCCCCCCCccee
Q 014875 145 GCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSL-VLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSV 223 (416)
Q Consensus 145 G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~-~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~ 223 (416)
|-++.-|+.. ....-.++......+|+++.+. .|.. .+.+ +|++|+.|... ....
T Consensus 546 G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~~s-~~VY~~vSe---nGkifM~G~~t----------m~~n 601 (3738)
T KOG1428|consen 546 GWIASVDDKK----------RNGRLRRLVPSNRRKIVHVCAS-GHVYGYVSE---NGKIFMGGLHT----------MRVN 601 (3738)
T ss_pred ceEEeccCcc----------cccchhhcCCCCcceeEEEeee-eEEEEEEcc---CCeEEeeccee----------EEec
Confidence 4455544321 1111112222233568887554 4554 4556 99999998632 2333
Q ss_pred ecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCC-----------------------------------
Q 014875 224 SLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSD----------------------------------- 268 (416)
Q Consensus 224 ~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~----------------------------------- 268 (416)
.....+..+.+.-|.+++.|..|.++++.+|+||.||.|+.+|.+
T Consensus 602 ~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~ 681 (3738)
T KOG1428|consen 602 VSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPS 681 (3738)
T ss_pred chHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcc
Confidence 345566778888899999999999999999999999998777643
Q ss_pred ----------------------------------------------CCC-----------------cee-------c---
Q 014875 269 ----------------------------------------------VNC-----------------PQS-------L--- 275 (416)
Q Consensus 269 ----------------------------------------------~~~-----------------p~~-------~--- 275 (416)
... |+. +
T Consensus 682 VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~s 761 (3738)
T KOG1428|consen 682 VCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILS 761 (3738)
T ss_pred hhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeec
Confidence 000 000 0
Q ss_pred --CCCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCCeeEEEEC
Q 014875 276 --PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTE 353 (416)
Q Consensus 276 --~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~ 353 (416)
+...++.+|+||..|+++|.+|++||+||+|.+||||.|+.... ..|.++..+.+..+++|++|.+|++++..
T Consensus 762 q~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk-----~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~ 836 (3738)
T KOG1428|consen 762 QGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSK-----NTPQQVILPSDTVIVQVAAGSNHTILRAN 836 (3738)
T ss_pred cCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccC-----CCcceEEcCCCCceEEEecCCCceEEEec
Confidence 12346889999999999999999999999999999999998754 44577777788899999999999999999
Q ss_pred CCCEEEEECCCCCCccCCCCCC---ccCceEEecCC-cccCCCceEEEeecCCeEEEEc
Q 014875 354 NRAIMTWGWGEHGQLGLGNTCD---QIHPKVVNLGD-EFQNRDTQLEVFCGSGFTYAIS 408 (416)
Q Consensus 354 ~g~vy~wG~n~~gqLG~g~~~~---~~~p~~v~~~~-~~~~~~~v~~v~~G~~~t~~i~ 408 (416)
||+||.+|.-..|||+..--+. ...|.+++-.. .+ .....+|-|-++.|++-.
T Consensus 837 DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f--~~~A~WIGAdGDss~i~~ 893 (3738)
T KOG1428|consen 837 DGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGF--NAFAGWIGADGDSSIIHS 893 (3738)
T ss_pred CCcEEEeccccCccccCccccccccccCCCcCCCCCccc--cccceeeccCCCcceeeh
Confidence 9999999999999999754332 23566666332 22 124557777777666543
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-19 Score=182.80 Aligned_cols=260 Identities=21% Similarity=0.295 Sum_probs=180.8
Q ss_pred ccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEe
Q 014875 126 YTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGF 205 (416)
Q Consensus 126 ~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~w 205 (416)
..-+++..++.+.++-+.+|+||-.|... .+|+-..-... ..+. ...+|++|+.|-+..+++.- ..+|-++.-
T Consensus 479 ~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nW--mEL~--l~~~IVq~SVG~D~~~~~~~-A~~G~I~~v 551 (3738)
T KOG1428|consen 479 PQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNW--MELC--LPEPIVQISVGIDTIMFRSG-AGHGWIASV 551 (3738)
T ss_pred chheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCce--EEec--CCCceEEEEeccchhheeec-cCcceEEec
Confidence 45678889999999999999999999654 23332221111 1111 12579999999988877765 115666666
Q ss_pred CCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCCCceec---CCCCCee
Q 014875 206 GSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSL---PSSLSFS 282 (416)
Q Consensus 206 G~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~---~~~~~i~ 282 (416)
|+... .| .-+........+|+++.+...---.+.++|++|..|...-.- +....+ ..+.-|.
T Consensus 552 ~D~k~--~~----------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~~---n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 552 DDKKR--NG----------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMRV---NVSSQMLNGLDNVMIS 616 (3738)
T ss_pred cCccc--cc----------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEEe---cchHHHhhccccceee
Confidence 64321 11 111111223347888866555556788999999999732211 001111 2455689
Q ss_pred EEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCccc------------------------------------------
Q 014875 283 QAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSST------------------------------------------ 320 (416)
Q Consensus 283 ~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~------------------------------------------ 320 (416)
+++.|..|.++++.+|.||+||-|..+|+|.-+.....
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC 696 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC 696 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc
Confidence 99999999999999999999999999999865332000
Q ss_pred ---------------------------------C---c--------------c--ccceeee---ccCCCCcEEEEecCC
Q 014875 321 ---------------------------------R---P--------------L--SVALEKV---SNLDGVKVIQIAAGA 345 (416)
Q Consensus 321 ---------------------------------~---~--------------~--~~~~~~~---~~~~~~~v~~i~~G~ 345 (416)
+ | . ..-|..+ ....+.++.+|+||.
T Consensus 697 ~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~ 776 (3738)
T KOG1428|consen 697 GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGN 776 (3738)
T ss_pred ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccC
Confidence 0 0 0 0001111 122346789999999
Q ss_pred CeeEEEECCCCEEEEECCCCCCccCCCCCCccCceEEecCCcccCCCceEEEeecCCeEEEEccCC
Q 014875 346 EHSAVVTENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC 411 (416)
Q Consensus 346 ~h~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~v~~v~~G~~~t~~i~~~~ 411 (416)
.|+++|.+|++||.+|+|.+||||+|++.+...|+.|.+++.. .+++|+||.+||++..+|-
T Consensus 777 ~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t----~~vQVaAGSNHT~l~~~DG 838 (3738)
T KOG1428|consen 777 FHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDT----VIVQVAAGSNHTILRANDG 838 (3738)
T ss_pred ceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCC----ceEEEecCCCceEEEecCC
Confidence 9999999999999999999999999999999999999988653 6889999999999988763
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.31 E-value=1.9e-12 Score=86.47 Aligned_cols=50 Identities=38% Similarity=0.728 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCcccc-CCCCCCcccceEeeecCCCceEEEEeCCCeEEEE
Q 014875 144 SGCLFTCGDGTFGQLG-HGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVL 193 (416)
Q Consensus 144 ~G~v~~~G~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~l 193 (416)
||+||+||.|.+|||| .++......|+++..+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7788888999999999988999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.30 E-value=4.9e-12 Score=84.49 Aligned_cols=50 Identities=34% Similarity=0.707 Sum_probs=46.9
Q ss_pred CCeEEEEecCCCCccC-CCCCCCeeceeEeeecCCCcccEEEEeecCceEEEE
Q 014875 90 GGKVFSWGRGSSGQLG-HGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFV 141 (416)
Q Consensus 90 ~g~vy~wG~n~~gqlG-~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~l 141 (416)
||+||+||.|.+|||| .........|+++..+.. .+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~--~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSG--VRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTT--SEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCC--CCEEEEEeCcceEEEC
Confidence 6999999999999999 778888999999999988 8999999999999987
No 11
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9e-14 Score=137.06 Aligned_cols=196 Identities=24% Similarity=0.345 Sum_probs=146.5
Q ss_pred ceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecCCCeEE
Q 014875 169 PVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSA 248 (416)
Q Consensus 169 p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~ 248 (416)
|..+..+...+|.+++||.+|+++++. .|++|.||.|.+||+|++ ....... |..+..+.+.+..+|++|..|++
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~---~g~~~~wg~~~~g~~~~~-~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~ 79 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSC---AGELFVWGMNNNGQLGRA-LYFPDAK-PEPVESLKGVPLAQVSAGEAHSF 79 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhc---cCCeeeccCCccchhhhh-ccCCCCC-CccchhhcCCcHHHHhcCCCcch
Confidence 444444555689999999999999999 999999999999999999 3333333 99999999999999999999999
Q ss_pred EEeCCCcEEEeeCCCCCCCCCCCceecCCCCCeeEEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCcccccee
Q 014875 249 ALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALE 328 (416)
Q Consensus 249 ~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~ 328 (416)
++.. |+++++.+|.++.+|+...+|+|..-..+ ...+.
T Consensus 80 ~lS~-------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~-----~~~~~ 117 (850)
T KOG0941|consen 80 ALSS-------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTEN-----EVLPL 117 (850)
T ss_pred hhhh-------------------------------------chhhcchhccccccCCccccccccccccc-----ccccH
Confidence 9865 89999999999999999999999943332 34445
Q ss_pred eeccCCCCcEEEEecCCCeeEEEEC-CCCEEEEECCCCCCccCCCCCCccCceEEecCCcccCCCceEEEeecCCeEEEE
Q 014875 329 KVSNLDGVKVIQIAAGAEHSAVVTE-NRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAI 407 (416)
Q Consensus 329 ~~~~~~~~~v~~i~~G~~h~~~l~~-~g~vy~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~v~~v~~G~~~t~~i 407 (416)
.+..+-+..+..|+||..|++++.. -|++|..|.+..| .|.-.+...+.+.... .-.....+..+++|++.++.+
T Consensus 118 ~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s~~~~l~~~-d~~~~~~~~~~~~g~dq~~~l 193 (850)
T KOG0941|consen 118 LVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KGVIVSLSGEDLLRDH-DSEKDHRCSLAFAGGDQTFSL 193 (850)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cceeeccchhhhcccc-cHHHHHHHHHHhcCCCceEEE
Confidence 5555666789999999999998654 5999999998887 1111111111111111 100112345689999999998
Q ss_pred ccCCCCCC
Q 014875 408 SRHCLPSQ 415 (416)
Q Consensus 408 ~~~~~~~~ 415 (416)
.....+++
T Consensus 194 ~~~~~~~~ 201 (850)
T KOG0941|consen 194 SSKGENSQ 201 (850)
T ss_pred Eeeccccc
Confidence 88777654
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.19 E-value=2.5e-11 Score=70.46 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=26.0
Q ss_pred EEEEecCCCeeEEEECCCCEEEEECCCCCC
Q 014875 338 VIQIAAGAEHSAVVTENRAIMTWGWGEHGQ 367 (416)
Q Consensus 338 v~~i~~G~~h~~~l~~~g~vy~wG~n~~gq 367 (416)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.13 E-value=7.8e-11 Score=68.35 Aligned_cols=30 Identities=43% Similarity=0.700 Sum_probs=26.0
Q ss_pred eEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCC
Q 014875 180 VHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQ 212 (416)
Q Consensus 180 i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gq 212 (416)
|++|+||.+|+++|++ +|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~---~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTS---DGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE----TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEc---CCCEEEEcCCcCCC
Confidence 7899999999999999 99999999999987
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1e-12 Score=129.72 Aligned_cols=145 Identities=33% Similarity=0.617 Sum_probs=125.2
Q ss_pred CeeeecCCCCCeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCce
Q 014875 58 PQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNH 137 (416)
Q Consensus 58 p~~i~~~~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~ 137 (416)
|+++....-..|.+++||..|+++++. .|.+++||.|.+||+|++.......|.+++.+.+ ....+|+||..|
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~-----~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g--~p~a~v~~g~~h 77 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSC-----AGELFVWGMNNNGQLGRALYFPDAKPEPVESLKG--VPLAQVSAGEAH 77 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhc-----cCCeeeccCCccchhhhhccCCCCCCccchhhcC--CcHHHHhcCCCc
Confidence 444444545689999999999999999 9999999999999999995554444999998888 789999999998
Q ss_pred EEEEEe-------CCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCC
Q 014875 138 SGFVSD-------SGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210 (416)
Q Consensus 138 ~~~lt~-------~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~ 210 (416)
++++.. +|.++.+|....||+|.........|..+..+-+..+.+|+||..|+++...+ -|++|..|.+..
T Consensus 78 s~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~--l~qsf~~~~~~s 155 (850)
T KOG0941|consen 78 SFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPR--LGQSFSFGKGAS 155 (850)
T ss_pred chhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhh--hcceeecccCCC
Confidence 877765 99999999999999999777777788888777778999999999999998875 799999998877
Q ss_pred C
Q 014875 211 G 211 (416)
Q Consensus 211 g 211 (416)
|
T Consensus 156 G 156 (850)
T KOG0941|consen 156 G 156 (850)
T ss_pred C
Confidence 6
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.52 E-value=0.25 Score=54.46 Aligned_cols=290 Identities=16% Similarity=0.117 Sum_probs=141.3
Q ss_pred CeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEe--------------eec-CC---CcccEE
Q 014875 68 SVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPV--------------TFF-DG---HRYTIT 129 (416)
Q Consensus 68 ~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v--------------~~~-~~---~~~~i~ 129 (416)
..++|.....+-++.+. +|+||.--..... .....-...|... ..+ .+ .-.-.+
T Consensus 490 ~A~~VgLs~drLFvADs-----eGkLYsa~l~~~~---~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAli 561 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADS-----EGKLYSADLPAAQ---DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALI 561 (1774)
T ss_pred hhhheeecCCeEEEEeC-----CCCEEeccccccc---CCCcceEeccccccccccccccccceeeccccCCCCeeeEEE
Confidence 67778877777777788 9999985543221 1111112222222 111 00 001233
Q ss_pred EEeecCceEEEEEeCCCEEEEcCCCCccccCCCCCC-----cccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEE
Q 014875 130 HISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRS-----HSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYG 204 (416)
Q Consensus 130 ~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~-----~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~ 204 (416)
+=..|..|++.|.++|.=|--|+|-.-.|=+....- ...|.. .+-.|..-.++|.+ |+|+.
T Consensus 562 kd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~----------~ldl~r~G~v~L~~----G~i~~ 627 (1774)
T PF11725_consen 562 KDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHE----------ILDLGRAGLVGLQD----GKIQY 627 (1774)
T ss_pred eccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHH----------hhccccccceeecc----ceEee
Confidence 334567777778777777777766543332221110 111111 12234555677776 99998
Q ss_pred eCCCCC----------CCCCCCCCCcceeecCeEecccC-CCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCCCce
Q 014875 205 FGSGKR----------GQLGVSKDRIRSVSLPQVTIGLH-DIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQ 273 (416)
Q Consensus 205 wG~n~~----------gqlG~~~~~~~~~~~p~~~~~~~-~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~ 273 (416)
|-.... .||-++.+....+..--++..+. ...--+|+-|.++.++++.--.-+-.|.. .
T Consensus 628 wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~----------l 697 (1774)
T PF11725_consen 628 WDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDA----------L 697 (1774)
T ss_pred ecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCcc----------c
Confidence 854322 22322322222221111111110 01122344455555554432111111110 0
Q ss_pred ecCCCCCeeEEEe-cCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCCee-EEE
Q 014875 274 SLPSSLSFSQAAL-GWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHS-AVV 351 (416)
Q Consensus 274 ~~~~~~~i~~i~~-g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~-~~l 351 (416)
.=.....|..++. +.++.++|++.|++-..=. +....+...+.+++ .|++|+.-..|. +|+
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k----------------~g~p~~l~~~gl~G-~ik~l~lD~~~nL~Al 760 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQK----------------PGRPVPLSRPGLSG-EIKDLALDEKQNLYAL 760 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCccccccC----------------CCCCccCCCCCCCc-chhheeeccccceeEe
Confidence 0123556666665 7899999999998766420 01111222233443 899999998876 469
Q ss_pred ECCCCEEEEECCCCCCccCCCCCCccCceEEecCCcccCCCceEEEeecCCeEEEEccCC
Q 014875 352 TENRAIMTWGWGEHGQLGLGNTCDQIHPKVVNLGDEFQNRDTQLEVFCGSGFTYAISRHC 411 (416)
Q Consensus 352 ~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~v~~v~~G~~~t~~i~~~~ 411 (416)
+.+|++|..=.-.+-+.-.++. ....+++|.++. ...+..+....+|.+.+.-+.
T Consensus 761 t~~G~Lf~~~k~~WQ~~~~~~~-~~~~W~~v~lP~----~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 761 TSTGELFRLPKEAWQGNAEGDQ-MAAKWQKVALPD----EQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cCCCceeecCHHHhhCcccCCc-cccCceeccCCC----CCchhhhhcCCCCceEEEecC
Confidence 9999999743322211111111 113444555442 235667777777776665544
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.27 E-value=0.99 Score=50.09 Aligned_cols=110 Identities=22% Similarity=0.269 Sum_probs=71.3
Q ss_pred EecccCCCCEEEEec-CCCeEEEEeCCCcEEEeeCCCCCCCCCCCceecCC---CCCeeEEEecCc-eEEEEecCCCEEE
Q 014875 228 VTIGLHDIEIVGISA-NGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPS---SLSFSQAALGWN-HVLVLTGDGEVLM 302 (416)
Q Consensus 228 ~~~~~~~~~i~~i~~-g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~---~~~i~~i~~g~~-~~~~lt~~g~vy~ 302 (416)
.+..+++..|..++. +.++.++|++.|++-..= ....|..++. .-.|++|++-.. .-++++.+|+||.
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~-------k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ-------KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc-------CCCCCccCCCCCCCcchhheeeccccceeEecCCCceee
Confidence 344555556666654 678899999999986542 1223555543 357999999766 5678999999998
Q ss_pred -----eeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCCeeEEEECCC
Q 014875 303 -----LGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTENR 355 (416)
Q Consensus 303 -----~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~~g 355 (416)
|=.+..+-. ......++..+.+..|..+....+|.+.+.-++
T Consensus 769 ~~k~~WQ~~~~~~~-----------~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 769 LPKEAWQGNAEGDQ-----------MAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cCHHHhhCcccCCc-----------cccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 433332200 012234444446678999999999888776554
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.47 E-value=3.9 Score=40.53 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=68.6
Q ss_pred cCCCeEEEEeCCCcEEEe-eCCCCCCCCCCCceecCCCCCeeEEEecC-ceEEEEecCCCEEE-eeCCCCCCCCCCCCCc
Q 014875 242 ANGDRSAALSAEGHLYTW-GRGFNSTSDVNCPQSLPSSLSFSQAALGW-NHVLVLTGDGEVLM-LGGSHHGMLSDPERVS 318 (416)
Q Consensus 242 ~g~~~~~~lt~~G~vy~w-G~~~~~~~~~~~p~~~~~~~~i~~i~~g~-~~~~~lt~~g~vy~-~G~n~~gqlG~~~~~~ 318 (416)
.|.....||..+|++|.= |-....-.+ ..-+.+....++.+|++|. .-..+++.+|+||. -|--...+.|..=.
T Consensus 190 ~g~~~awAI~s~Gd~y~RtGvs~~~P~G-raW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-- 266 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLRTGVSVDRPCG-RAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-- 266 (705)
T ss_pred CCceEEEEEecCCcEEEeccccCCCCCC-ceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh--
Confidence 677788999999999973 111111000 1112234444799999998 77889999998764 56655555554221
Q ss_pred ccCccccceeeeccCCCC-cEEEEecCCCeeEEEECCCCEEE
Q 014875 319 STRPLSVALEKVSNLDGV-KVIQIAAGAEHSAVVTENRAIMT 359 (416)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~-~v~~i~~G~~h~~~l~~~g~vy~ 359 (416)
.++.+... .++.|+.|.....+|+.+|.+|.
T Consensus 267 ----------dI~tP~~a~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 267 ----------DIVTPRQALEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ----------hccCcccccceEEEEeccceEEEEecCCcEEE
Confidence 11111111 38899999999999999999985
No 18
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.99 E-value=12 Score=36.03 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEE--eCCCEEEEc
Q 014875 90 GGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVS--DSGCLFTCG 151 (416)
Q Consensus 90 ~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt--~~G~v~~~G 151 (416)
.|++|.|=-+. |. ++..+..+...|..+....+-+.++| .||.|++|=
T Consensus 102 ~g~lYlWelss-G~-------------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 102 SGNLYLWELSS-GI-------------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred cCcEEEEEecc-cc-------------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 78999997653 21 12222222233555554444455554 788899985
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.33 E-value=15 Score=32.67 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=39.3
Q ss_pred CCCeEEEEeCCCcEEEeeCCCCCCCCCCCceecCCCCCeeEEEec--CceEEEEecCCCEEEeeCC
Q 014875 243 NGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG--WNHVLVLTGDGEVLMLGGS 306 (416)
Q Consensus 243 g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~~G~n 306 (416)
-..+-+.-+.+|.|++|-...+.......|. ....|.+++.. ....++..+.|++|+|-.-
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 3445566688999999976544332222221 23567777665 4455677888999999753
No 20
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=88.49 E-value=26 Score=35.05 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=52.7
Q ss_pred CeEEEEeCC-cceEEeeCCCcccCCeEE-EEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEeCC
Q 014875 68 SVSMLACGG-AHVLALTSPSSVIGGKVF-SWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSG 145 (416)
Q Consensus 68 ~i~~ia~G~-~h~~~lt~~~~~~~g~vy-~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G 145 (416)
.+.+|++|. .-..+++. +|+|+ --|-..+.+.|..-. ++.+|.... .++.|+.|..-.-+||.+|
T Consensus 228 ~L~qISagPtg~VwAvt~-----nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg 294 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTE-----NGAVFYREGVSRQNPEGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDG 294 (705)
T ss_pred ccceEeecCcceEEEEee-----CCcEEEEecccccCCCCchhh-hccCccccc-------ceEEEEeccceEEEEecCC
Confidence 689999998 67789999 88865 567666666664433 444554432 2899999999999999999
Q ss_pred CEEEE
Q 014875 146 CLFTC 150 (416)
Q Consensus 146 ~v~~~ 150 (416)
+||.=
T Consensus 295 ~lwfr 299 (705)
T KOG3669|consen 295 NLWFR 299 (705)
T ss_pred cEEEE
Confidence 99963
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=0.05 Score=57.38 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=88.9
Q ss_pred CceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeE-ecccCCCCEEEEecCCCeEEEEeCCCcE
Q 014875 178 KNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQV-TIGLHDIEIVGISANGDRSAALSAEGHL 256 (416)
Q Consensus 178 ~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~-~~~~~~~~i~~i~~g~~~~~~lt~~G~v 256 (416)
.+++.|.+-++..++|.. +|++|.|-+.+..-+-......+....|.. ...+.+.+|+.+++..-..-++|++|+|
T Consensus 374 n~~I~I~A~s~el~Alhr---kGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHR---KGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CeeEEeehhHHHHHHHhh---CCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 468888888888899999 999999987765444332222233334432 3356677999999999999999999999
Q ss_pred EEeeC----CCCCCCCCCCceec-CCCCCeeEEEecCceEEEEecCCCEEEeeCCCCC
Q 014875 257 YTWGR----GFNSTSDVNCPQSL-PSSLSFSQAALGWNHVLVLTGDGEVLMLGGSHHG 309 (416)
Q Consensus 257 y~wG~----~~~~~~~~~~p~~~-~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~g 309 (416)
-.|=. +....+....-+++ ..+..+++..|-..|.++..+|+.+|-||---+.
T Consensus 451 asWlDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~ 508 (3015)
T KOG0943|consen 451 ASWLDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFS 508 (3015)
T ss_pred hhHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeeh
Confidence 99943 11111222222223 3456677778888899999999999999964433
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=0.072 Score=56.25 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=85.1
Q ss_pred cccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCC--CCCCcccceE-eeecCCCceEEEEeCCCeEEEEEeccCCCe
Q 014875 125 RYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHG--DYRSHSSPVK-VSSFVNKNVHQIACGMRHSLVLLKDCLGNQ 201 (416)
Q Consensus 125 ~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~--~~~~~~~p~~-v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~ 201 (416)
..+++.|.+-.+..++|..+|++|.|-+...--|-.. -..+...|.. ...+.+.+|+.+++..-..-++|+ +|+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~---ngh 449 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATE---NGH 449 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeec---CCc
Confidence 3578888888888999999999999987654333221 1111222221 234556899999999999999999 999
Q ss_pred EEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeCC
Q 014875 202 VYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRG 262 (416)
Q Consensus 202 vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~ 262 (416)
|.+|=+- .|.+. ..+...............+++.-|...|.++...+..+|.||--
T Consensus 450 lasWlDE----cgagV-~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 450 LASWLDE----CGAGV-AFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred hhhHHhh----hhhhh-hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeee
Confidence 9999432 22221 01111111111123345677777888899999999999999974
No 23
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=85.18 E-value=38 Score=32.84 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=79.9
Q ss_pred EEEEeecC--ceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEe
Q 014875 128 ITHISAGW--NHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGF 205 (416)
Q Consensus 128 i~~i~~G~--~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~w 205 (416)
+..+++.. ++.++=|..|++|.|=.++--.|-.- .. --..|+.+....+-+.+++. ..||.|.+|
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~----------~a--HYQ~ITcL~fs~dgs~iiTg-skDg~V~vW 150 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL----------SA--HYQSITCLKFSDDGSHIITG-SKDGAVLVW 150 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHH----------Hh--hccceeEEEEeCCCcEEEec-CCCccEEEE
Confidence 55555443 33344458999999976542111100 00 01346666666666677764 238999999
Q ss_pred CCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecCCCe----EEEEeCCCcEEEeeCCCCCCCCCCCceecCCCCCe
Q 014875 206 GSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDR----SAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSF 281 (416)
Q Consensus 206 G~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~----~~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~~i 281 (416)
=--+.-+ ........|.....-....|+++.+|..- .+-...|..+-+|-.... . .......|.....
T Consensus 151 ~l~~lv~-----a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~--LLlti~fp~si~a 222 (476)
T KOG0646|consen 151 LLTDLVS-----ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-V--LLLTITFPSSIKA 222 (476)
T ss_pred EEEeecc-----cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-e--eeEEEecCCccee
Confidence 4322100 11111334444444445578888776652 222234555555533111 0 0111112333344
Q ss_pred eEEEecCceEEEEecCCCEEEeeC
Q 014875 282 SQAALGWNHVLVLTGDGEVLMLGG 305 (416)
Q Consensus 282 ~~i~~g~~~~~~lt~~g~vy~~G~ 305 (416)
..+.-+..+.++=+++|++|..-.
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred EEEcccccEEEecCCcceEEeeeh
Confidence 445557778888888998887543
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.50 E-value=7.4 Score=34.37 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=25.0
Q ss_pred ccEEEEeecCceEEEEEeCCCEEEEcCCC
Q 014875 126 YTITHISAGWNHSGFVSDSGCLFTCGDGT 154 (416)
Q Consensus 126 ~~i~~i~~G~~~~~~lt~~G~v~~~G~n~ 154 (416)
.++..+.|-..+.++||++|.+|+|-...
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 35888999999999999999999997544
No 25
>PHA02713 hypothetical protein; Provisional
Probab=77.74 E-value=88 Score=32.03 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=10.1
Q ss_pred EEecCCCEEEeeCC
Q 014875 293 VLTGDGEVLMLGGS 306 (416)
Q Consensus 293 ~lt~~g~vy~~G~n 306 (416)
+..-+|+||+.|..
T Consensus 459 ~~~~~~~IYv~GG~ 472 (557)
T PHA02713 459 VVSHKDDIYVVCDI 472 (557)
T ss_pred EEEECCEEEEEeCC
Confidence 34456899999854
No 26
>PHA03098 kelch-like protein; Provisional
Probab=77.52 E-value=74 Score=32.22 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=11.0
Q ss_pred ceEEEEEeCCCEEEEcC
Q 014875 136 NHSGFVSDSGCLFTCGD 152 (416)
Q Consensus 136 ~~~~~lt~~G~v~~~G~ 152 (416)
.|++ ..-+|+||++|-
T Consensus 382 ~~~~-~~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCV-VNVNNLIYVIGG 397 (534)
T ss_pred cceE-EEECCEEEEECC
Confidence 3444 445789999984
No 27
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.84 E-value=94 Score=31.92 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=50.4
Q ss_pred eEEEEeCCCcEEEeeCCCCCCCCCCCc-eecCCCCCeeEEEec---CceEEEEecCCCEEEeeCCCCCCCCCCCCCcccC
Q 014875 246 RSAALSAEGHLYTWGRGFNSTSDVNCP-QSLPSSLSFSQAALG---WNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTR 321 (416)
Q Consensus 246 ~~~~lt~~G~vy~wG~~~~~~~~~~~p-~~~~~~~~i~~i~~g---~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~ 321 (416)
...+..-+|+||+.|-......-...- ..-|.......++.. ..+.-+..-++.||+.|..+. +.....
T Consensus 420 ~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~------ 492 (571)
T KOG4441|consen 420 GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSS------ 492 (571)
T ss_pred eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccce------
Confidence 334455689999998744433111100 011223333333221 122224444699999997543 111100
Q ss_pred ccccceeeeccCCCCcEE---EEecCCCeeEEEECCCCEEEEEC
Q 014875 322 PLSVALEKVSNLDGVKVI---QIAAGAEHSAVVTENRAIMTWGW 362 (416)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~---~i~~G~~h~~~l~~~g~vy~wG~ 362 (416)
...-.+...... .+.....+.-+..-++++|+-|-
T Consensus 493 ------VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 493 ------VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ------EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 111111111233 23456667767778899999885
No 28
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.87 E-value=21 Score=31.53 Aligned_cols=29 Identities=41% Similarity=0.794 Sum_probs=25.3
Q ss_pred CCeEEEEeCCcceEEeeCCCcccCCeEEEEecCC
Q 014875 67 SSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGS 100 (416)
Q Consensus 67 ~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~ 100 (416)
.++..+.+-..+.++||. +|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~-----~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITS-----SGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeC-----CCeEEEEECCC
Confidence 478889999999999999 99999997544
No 29
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=72.74 E-value=8.5 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.3
Q ss_pred cEEEEeecC-ceEEEEEeCCCEEEE
Q 014875 127 TITHISAGW-NHSGFVSDSGCLFTC 150 (416)
Q Consensus 127 ~i~~i~~G~-~~~~~lt~~G~v~~~ 150 (416)
.+++|++|. ....+++.+|+||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 599999999 889999999999963
No 30
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=71.74 E-value=9.4 Score=22.40 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.3
Q ss_pred cEEEEecCC-CeeEEEECCCCEEEE
Q 014875 337 KVIQIAAGA-EHSAVVTENRAIMTW 360 (416)
Q Consensus 337 ~v~~i~~G~-~h~~~l~~~g~vy~w 360 (416)
.+++|++|. ....++..+|+||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 789999999 888999999999963
No 31
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.59 E-value=1e+02 Score=30.05 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=74.5
Q ss_pred cEEEEee-cCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEe--eecCCCceEEEEeCCCeEEEEEeccCCCeEE
Q 014875 127 TITHISA-GWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKV--SSFVNKNVHQIACGMRHSLVLLKDCLGNQVY 203 (416)
Q Consensus 127 ~i~~i~~-G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v--~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy 203 (416)
+|+.+.= -..+.++|+++|.++..- .+|.. .. ..+..+ ....+.++-.+..+.+-.++||. ++++|
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~---~f---sl~~~i~~~~v~e~~i~~~~~~~~GivvLt~---~~~~~ 150 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF---QF---SLGEEIEEEKVLECRIFAIWFYKNGIVVLTG---NNRFY 150 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce---ee---chhhhccccCcccccccccccCCCCEEEECC---CCeEE
Confidence 5666654 345788899999988763 33332 01 111111 11112334445556566788888 89999
Q ss_pred EeCCCCCCCCCCCCCCcceeecCeEeccc---CC-CCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCCCceecCCCC
Q 014875 204 GFGSGKRGQLGVSKDRIRSVSLPQVTIGL---HD-IEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSL 279 (416)
Q Consensus 204 ~wG~n~~gqlG~~~~~~~~~~~p~~~~~~---~~-~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~ 279 (416)
..=..+. ..-. ......|...... .. ..+..+......-+.+..++.++.--.+...+ +....
T Consensus 151 ~v~n~~~-~~~~----~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--------i~~~~ 217 (410)
T PF04841_consen 151 VVNNIDE-PVKL----RRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--------IDSDG 217 (410)
T ss_pred EEeCccc-cchh----hccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--------ccCCC
Confidence 8732221 1000 0000122222111 11 11211222222233334445565432222211 33445
Q ss_pred CeeEEEec--CceEEEEecCCCEEEee
Q 014875 280 SFSQAALG--WNHVLVLTGDGEVLMLG 304 (416)
Q Consensus 280 ~i~~i~~g--~~~~~~lt~~g~vy~~G 304 (416)
++.+|+.. ..+.++++++|.+|..=
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 78887776 45677778889998853
No 32
>PLN02153 epithiospecifier protein
Probab=69.87 E-value=1e+02 Score=29.13 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=12.9
Q ss_pred CCeEEEEEeccCCCeEEEeCCC
Q 014875 187 MRHSLVLLKDCLGNQVYGFGSG 208 (416)
Q Consensus 187 ~~hs~~lt~~~~~g~vy~wG~n 208 (416)
..|++++.. +++|++|--
T Consensus 129 ~~~~~~~~~----~~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMASDE----NHVYVFGGV 146 (341)
T ss_pred eeeEEEEEC----CEEEEECCc
Confidence 367766654 899999853
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=67.51 E-value=94 Score=27.91 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=60.9
Q ss_pred eceeEeeecCCCcccEEEE--eecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeC--CC
Q 014875 113 LYPKPVTFFDGHRYTITHI--SAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACG--MR 188 (416)
Q Consensus 113 ~~p~~v~~~~~~~~~i~~i--~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~ 188 (416)
..|.++..++..+..|..| .|-....+-=.+||.+-+|-... +.... .... ...|..|.-- ..
T Consensus 71 ~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~qR--------~~~~--~spVn~vvlhpnQt 137 (311)
T KOG0315|consen 71 NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSCQR--------NYQH--NSPVNTVVLHPNQT 137 (311)
T ss_pred CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---cccch--------hccC--CCCcceEEecCCcc
Confidence 3455555555543445444 33333333345788888886433 11111 1111 1234444333 33
Q ss_pred eEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecC--CCeEEEEeCCCcEEEeeCCC
Q 014875 189 HSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN--GDRSAALSAEGHLYTWGRGF 263 (416)
Q Consensus 189 hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~~~ 263 (416)
+.+.-+. +|.|++|--... ......+|.. +..|.++... ....++.++.|+.|+|-.-.
T Consensus 138 eLis~dq---sg~irvWDl~~~--------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 138 ELISGDQ---SGNIRVWDLGEN--------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred eEEeecC---CCcEEEEEccCC--------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 4444445 899999953221 1111122211 2345555554 44667788999999997633
No 34
>PHA03098 kelch-like protein; Provisional
Probab=67.28 E-value=1.5e+02 Score=30.06 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=11.9
Q ss_pred CeEEEEEeccCCCeEEEeCCC
Q 014875 188 RHSLVLLKDCLGNQVYGFGSG 208 (416)
Q Consensus 188 ~hs~~lt~~~~~g~vy~wG~n 208 (416)
.|+++.. +++||++|-.
T Consensus 335 ~~~~~~~----~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTVF----NNRIYVIGGI 351 (534)
T ss_pred cceEEEE----CCEEEEEeCC
Confidence 4555554 5999999854
No 35
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=66.62 E-value=1.1e+02 Score=28.49 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=12.1
Q ss_pred eeEEEECCCCEEEEECCC
Q 014875 347 HSAVVTENRAIMTWGWGE 364 (416)
Q Consensus 347 h~~~l~~~g~vy~wG~n~ 364 (416)
++.+...+++||+.|-..
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 333445678999999644
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=66.12 E-value=1.8e+02 Score=30.54 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=25.7
Q ss_pred CeeEEEec--CceEEEEecCCCEEEeeCCCCCCCCC
Q 014875 280 SFSQAALG--WNHVLVLTGDGEVLMLGGSHHGMLSD 313 (416)
Q Consensus 280 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlG~ 313 (416)
.+..++.. ..-.++.|-||++-.|-.++..|.|.
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 34444444 66678888899999999999999853
No 37
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.74 E-value=95 Score=29.67 Aligned_cols=57 Identities=21% Similarity=0.073 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCcEEEeeCCCCCCCCCCCceecCCCCCeeEEEecCceEEEEecCCCEEEe
Q 014875 244 GDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLML 303 (416)
Q Consensus 244 ~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~ 303 (416)
..+.++.+.+|.||++-... +++-- ..++....-...-..-..+.++.+.+|+||+|
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~~--~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFVA--RLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEE--EEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 34667778889999885422 21100 00111111111112333568888899999986
No 38
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=65.27 E-value=1.7e+02 Score=30.08 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=32.9
Q ss_pred EEeCCCcEEEeeCCCCCCCCCCC-ceecCCCCCeeE---EEecCceEEEEecCCCEEEeeC
Q 014875 249 ALSAEGHLYTWGRGFNSTSDVNC-PQSLPSSLSFSQ---AALGWNHVLVLTGDGEVLMLGG 305 (416)
Q Consensus 249 ~lt~~G~vy~wG~~~~~~~~~~~-p~~~~~~~~i~~---i~~g~~~~~~lt~~g~vy~~G~ 305 (416)
+..-++.||+.|-... +..... ...-|....+.. +.....+.-+..-++++|+-|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 5556889999987554 211111 111133334444 3445666666777899999986
No 39
>PHA02713 hypothetical protein; Provisional
Probab=58.65 E-value=1.2e+02 Score=30.99 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=10.9
Q ss_pred EEEeCCCcEEEeeCC
Q 014875 248 AALSAEGHLYTWGRG 262 (416)
Q Consensus 248 ~~lt~~G~vy~wG~~ 262 (416)
.+..-+|+||++|-.
T Consensus 346 ~~~~~~g~IYviGG~ 360 (557)
T PHA02713 346 SLAVIDDTIYAIGGQ 360 (557)
T ss_pred eEEEECCEEEEECCc
Confidence 344457899999974
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=58.28 E-value=2.4e+02 Score=29.58 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=61.9
Q ss_pred EEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecC--CCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCCCCC
Q 014875 138 SGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFV--NKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQLGV 215 (416)
Q Consensus 138 ~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~ 215 (416)
++.+.+.|.=.++|....|||..=+-... ..|.... -..|..++-..+-.++.|- +.||+|-+|-..+
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVlKQQgH~~~i~~l~YSpDgq~iaTG-~eDgKVKvWn~~S------ 381 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVLKQQGHSDRITSLAYSPDGQLIATG-AEDGKVKVWNTQS------ 381 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeecc---ceeeeccccccceeeEEECCCCcEEEec-cCCCcEEEEeccC------
Confidence 44555667777778777777764221111 1111111 1245566555554444443 2278888883321
Q ss_pred CCCCcceeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCC
Q 014875 216 SKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNST 266 (416)
Q Consensus 216 ~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~ 266 (416)
...+-+.-..-.....++...-.+..+...-||.|-+|-...+..
T Consensus 382 ------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 382 ------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 111122222223445667777777778888899999998766543
No 41
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=57.69 E-value=2.7e+02 Score=29.97 Aligned_cols=161 Identities=12% Similarity=0.012 Sum_probs=82.1
Q ss_pred eCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecC-----CCeEEEEeCCCcEEEe
Q 014875 185 CGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN-----GDRSAALSAEGHLYTW 259 (416)
Q Consensus 185 ~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~w 259 (416)
...++.+++|+ .|++|..-...--..+. ...-.+....+....+++|+.+.+- ....+++|.+|.+.-.
T Consensus 544 ~t~d~LllfTs---~Grv~~l~~~~IP~~~r---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 544 STHDYLLFFTN---RGKVYWLKVYQIPEASR---TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred cCCCeEEEEeC---CCcEEEEEhhhCcCCCc---CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 34455777788 99999983222211111 1111112122222345567666552 2357788899887765
Q ss_pred eCCCCCC---CCCCCceecCCCCCeeEEEe--cCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCC
Q 014875 260 GRGFNST---SDVNCPQSLPSSLSFSQAAL--GWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLD 334 (416)
Q Consensus 260 G~~~~~~---~~~~~p~~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~ 334 (416)
-...+.. .+.. -..+..+..++.+.. ...+.+++|++|++|.+-..+--..+....... . +..-.
T Consensus 618 ~l~~~~~~~r~G~~-aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~-------~--i~L~~ 687 (800)
T TIGR01063 618 SLTEFSNIRSNGII-AIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR-------G--IKLKN 687 (800)
T ss_pred EhHHhhhhccCCcc-cccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee-------c--ccCCC
Confidence 4332211 1110 011123445555433 345689999999999987765444443221110 0 11123
Q ss_pred CCcEEEEec--CCCeeEEEECCCCEEEEE
Q 014875 335 GVKVIQIAA--GAEHSAVVTENRAIMTWG 361 (416)
Q Consensus 335 ~~~v~~i~~--G~~h~~~l~~~g~vy~wG 361 (416)
+..|+.+.. ...+.+++|++|.+.-.=
T Consensus 688 ~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 688 EDFVVSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred CCEEEEEEEeccccEEEEEecCCcEEEEE
Confidence 345655544 233567788888666554
No 42
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=56.85 E-value=1.3e+02 Score=27.41 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=13.3
Q ss_pred CcceEEeeCCCcccCCeEEEEec
Q 014875 76 GAHVLALTSPSSVIGGKVFSWGR 98 (416)
Q Consensus 76 ~~h~~~lt~~~~~~~g~vy~wG~ 98 (416)
..|+++.-. +++|.||.
T Consensus 80 YGHtvV~y~------d~~yvWGG 96 (392)
T KOG4693|consen 80 YGHTVVEYQ------DKAYVWGG 96 (392)
T ss_pred cCceEEEEc------ceEEEEcC
Confidence 568887765 79999993
No 43
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=55.03 E-value=2e+02 Score=27.52 Aligned_cols=270 Identities=11% Similarity=0.010 Sum_probs=116.4
Q ss_pred eeecCCCCCeEEEEeCCcceEEeeCCCcccCCeEEEEec-CCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCc--
Q 014875 60 LLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGR-GSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWN-- 136 (416)
Q Consensus 60 ~i~~~~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~-n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~-- 136 (416)
.+.....+-+..|..|...-.++..+ ...+|++-. -.++..| ...+.. ..+..-.. ..+.+|..+..
T Consensus 31 ViD~~~~~v~g~i~~G~~P~~~~spD----g~~lyva~~~~~R~~~G--~~~d~V--~v~D~~t~--~~~~~i~~p~~p~ 100 (352)
T TIGR02658 31 TIDGEAGRVLGMTDGGFLPNPVVASD----GSFFAHASTVYSRIARG--KRTDYV--EVIDPQTH--LPIADIELPEGPR 100 (352)
T ss_pred EEECCCCEEEEEEEccCCCceeECCC----CCEEEEEeccccccccC--CCCCEE--EEEECccC--cEEeEEccCCCch
Confidence 34444555567788887655567772 346777653 1222222 222211 11111111 33555555444
Q ss_pred -------eEEEEEeCCC-EEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCC
Q 014875 137 -------HSGFVSDSGC-LFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSG 208 (416)
Q Consensus 137 -------~~~~lt~~G~-v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n 208 (416)
+.++|+.||+ +|+.-......+. .+.......+..|..+..-.++.+.+ +.....|++.
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~-----------VvD~~~~kvv~ei~vp~~~~vy~t~e--~~~~~~~~Dg 167 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG-----------VVDLEGKAFVRMMDVPDCYHIFPTAN--DTFFMHCRDG 167 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEE-----------EEECCCCcEEEEEeCCCCcEEEEecC--CccEEEeecC
Confidence 4889999997 7776433222221 22222222233344443222222221 3333344443
Q ss_pred CCCCCCCCCCCcceeecCeEecc-----cCCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCCCceec-CCCCCee
Q 014875 209 KRGQLGVSKDRIRSVSLPQVTIG-----LHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSL-PSSLSFS 282 (416)
Q Consensus 209 ~~gqlG~~~~~~~~~~~p~~~~~-----~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~-~~~~~i~ 282 (416)
..-+..+..... ......++.. +...+ ........-+.++.+|.||..-....... ...+..+ ....+-.
T Consensus 168 ~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~-~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 168 SLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAK-FLPAIEAFTEAEKAD 243 (352)
T ss_pred ceEEEEecCCCc-eEEeeeeeecCCccccccCC--ceEcCCCcEEEEecCCeEEEEecCCCcce-ecceeeecccccccc
Confidence 332222221111 1111111100 01112 22333456677777799988753211110 1111111 1111111
Q ss_pred EEEecCceEEEEecC-CCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCC-CeeEEEECCCCEEEE
Q 014875 283 QAALGWNHVLVLTGD-GEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGA-EHSAVVTENRAIMTW 360 (416)
Q Consensus 283 ~i~~g~~~~~~lt~~-g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~-~h~~~l~~~g~vy~w 360 (416)
...-|...-++++.+ +++|.-... ..... +.. ......-+..-....+..|..|. -+.++++.||+.+.+
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~------~~~~t-hk~-~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQ------RAKWT-HKT-ASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLY 315 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecC------Ccccc-ccC-CCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEE
Confidence 233444445777755 466764321 01000 000 11112223333444666777664 468899999996666
Q ss_pred ECCC
Q 014875 361 GWGE 364 (416)
Q Consensus 361 G~n~ 364 (416)
-.|.
T Consensus 316 vtn~ 319 (352)
T TIGR02658 316 ALST 319 (352)
T ss_pred EeCC
Confidence 6664
No 44
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=54.53 E-value=2.8e+02 Score=29.08 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=61.2
Q ss_pred EeecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCC
Q 014875 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210 (416)
Q Consensus 131 i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~ 210 (416)
++.|..|-+++. ||.|-.|..+. -.+|. .+|..++...+-+.++|.- +-.|-.|=.
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~a-----------snkis----s~Vsav~fsEdgSYfvT~g--nrHvk~wyl--- 193 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGA-----------SNKIS----SVVSAVAFSEDGSYFVTSG--NRHVKLWYL--- 193 (1080)
T ss_pred EeeccccceEEE----hhhhhhccccc-----------ccccc----eeEEEEEEccCCceeeeee--eeeEEEEEe---
Confidence 345666766665 67787665432 11222 4577777778888888872 334555511
Q ss_pred CCCCCCCCCcceeecCeE---ecccCCCCEEEEecCCC----eEEEEeCCCcEEEeeC
Q 014875 211 GQLGVSKDRIRSVSLPQV---TIGLHDIEIVGISANGD----RSAALSAEGHLYTWGR 261 (416)
Q Consensus 211 gqlG~~~~~~~~~~~p~~---~~~~~~~~i~~i~~g~~----~~~~lt~~G~vy~wG~ 261 (416)
|.+. ....++++|.. +..+.......++||.. .+++||..|.|.-+-.
T Consensus 194 -~~~~--KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 194 -QIQS--KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred -eccc--cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 1111 12223333332 22344557889999988 8999999999876643
No 45
>PLN02193 nitrile-specifier protein
Probab=53.49 E-value=2.4e+02 Score=28.08 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=11.8
Q ss_pred CeEEEEeCCCcEEEeeCC
Q 014875 245 DRSAALSAEGHLYTWGRG 262 (416)
Q Consensus 245 ~~~~~lt~~G~vy~wG~~ 262 (416)
.|++++ .+++||++|-.
T Consensus 271 ~h~~~~-~~~~iYv~GG~ 287 (470)
T PLN02193 271 FHSMAA-DEENVYVFGGV 287 (470)
T ss_pred ceEEEE-ECCEEEEECCC
Confidence 455555 46799999863
No 46
>PLN02153 epithiospecifier protein
Probab=51.11 E-value=2.2e+02 Score=26.83 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=12.1
Q ss_pred CeEEEEEeccCCCeEEEeCCC
Q 014875 188 RHSLVLLKDCLGNQVYGFGSG 208 (416)
Q Consensus 188 ~hs~~lt~~~~~g~vy~wG~n 208 (416)
.|++++. +++||++|-.
T Consensus 244 ~~~~~~~----~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV----GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE----CCEEEEECcc
Confidence 4555555 4899999964
No 47
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=50.60 E-value=19 Score=21.76 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.8
Q ss_pred CeEEEEeCCCcEEEeeCCC
Q 014875 245 DRSAALSAEGHLYTWGRGF 263 (416)
Q Consensus 245 ~~~~~lt~~G~vy~wG~~~ 263 (416)
.+.++++.+|.+|+-|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999743
No 48
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=48.68 E-value=3.7e+02 Score=28.86 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=35.6
Q ss_pred EEEEEeCCCCCccccCCCCCCcCCeeeecCCCCCeEEEEeCCcceEEeeCCCcccCCeE--EEEec
Q 014875 35 KVWSWGAGTDGQLGTGRLHDELSPQLLNLSSLSSVSMLACGGAHVLALTSPSSVIGGKV--FSWGR 98 (416)
Q Consensus 35 ~v~~wG~n~~GqLG~g~~~~~~~p~~i~~~~~~~i~~ia~G~~h~~~lt~~~~~~~g~v--y~wG~ 98 (416)
.|+++|++..=+.-. ...+...|..|.. ....|..|++-..|.+.-++ ++.| |-+++
T Consensus 27 fi~tcgsdg~ir~~~-~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~-----~~tv~~y~fps 85 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWK-TNSDEEEPETIDI-SGELVSSIACYSNHFLTGSE-----QNTVLRYKFPS 85 (933)
T ss_pred EEEEecCCCceEEee-cCCcccCCchhhc-cCceeEEEeecccceEEeec-----cceEEEeeCCC
Confidence 678888774422211 1223355666654 45689999998888888777 6654 44444
No 49
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=48.67 E-value=2.2e+02 Score=26.17 Aligned_cols=138 Identities=21% Similarity=0.229 Sum_probs=71.4
Q ss_pred cCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCC---CeEEEEEeccCCCeEEEeCCC-C
Q 014875 134 GWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGM---RHSLVLLKDCLGNQVYGFGSG-K 209 (416)
Q Consensus 134 G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~hs~~lt~~~~~g~vy~wG~n-~ 209 (416)
+.-|-++...||.||.-+... |.+|+-+-. ..+++.+.-|. -|.+++.. ||..|.+-.. .
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP~------------tGev~~ypLg~Ga~Phgiv~gp---dg~~Witd~~~a 125 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDPA------------TGEVETYPLGSGASPHGIVVGP---DGSAWITDTGLA 125 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCCC------------CCceEEEecCCCCCCceEEECC---CCCeeEecCcce
Confidence 345677888999999765433 444432211 12234433322 36666666 7777776332 1
Q ss_pred CCCCCCCCCCcceeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeC-CCCCCCCCCCceecCCCCCeeEE-Eec
Q 014875 210 RGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR-GFNSTSDVNCPQSLPSSLSFSQA-ALG 287 (416)
Q Consensus 210 ~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~-~~~~~~~~~~p~~~~~~~~i~~i-~~g 287 (416)
-+.++......+...+|. +.+-+.-.+.+++..|+||.-|. +.++.|+-... ..+|-.. ..+
T Consensus 126 I~R~dpkt~evt~f~lp~-----------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~-----~i~vfpaPqG~ 189 (353)
T COG4257 126 IGRLDPKTLEVTRFPLPL-----------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN-----VISVFPAPQGG 189 (353)
T ss_pred eEEecCcccceEEeeccc-----------ccCCCcccceeeCCCccEEEeeccccceecCcccC-----ceeeeccCCCC
Confidence 112221111122222221 12234456788999999999987 34555442110 0011111 133
Q ss_pred CceEEEEecCCCEEEe
Q 014875 288 WNHVLVLTGDGEVLML 303 (416)
Q Consensus 288 ~~~~~~lt~~g~vy~~ 303 (416)
.-.-++.|-||+||.-
T Consensus 190 gpyGi~atpdGsvwya 205 (353)
T COG4257 190 GPYGICATPDGSVWYA 205 (353)
T ss_pred CCcceEECCCCcEEEE
Confidence 4566888899999876
No 50
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=47.79 E-value=4.2e+02 Score=29.22 Aligned_cols=166 Identities=8% Similarity=-0.004 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeC--CCeEEEEEeccCCCeEEEeCCCCCCC
Q 014875 135 WNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACG--MRHSLVLLKDCLGNQVYGFGSGKRGQ 212 (416)
Q Consensus 135 ~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~hs~~lt~~~~~g~vy~wG~n~~gq 212 (416)
....+.||.+|-+----...|..-+.+ ...+..-.+..+..+... .++.+++|+ .|++|..=...--+
T Consensus 516 E~v~v~lS~~GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn---~Gkvy~ikvy~IPe 585 (957)
T PRK13979 516 EDVVITLSNEGFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTD---KGNMYQIKGINIPE 585 (957)
T ss_pred cceEEEEecCCEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEEC---CCeEEEEEeeeCCC
Confidence 455677888885554332222111111 111111123445555443 455777888 99999763322211
Q ss_pred CCCCCCCcceeecCeEeccc--CCCCEEEEecCC-----CeEEEEeCCCcEEEeeCCCCCCCCC-CCceecCCCCCeeEE
Q 014875 213 LGVSKDRIRSVSLPQVTIGL--HDIEIVGISANG-----DRSAALSAEGHLYTWGRGFNSTSDV-NCPQSLPSSLSFSQA 284 (416)
Q Consensus 213 lG~~~~~~~~~~~p~~~~~~--~~~~i~~i~~g~-----~~~~~lt~~G~vy~wG~~~~~~~~~-~~p~~~~~~~~i~~i 284 (416)
.. ....-.+....+..+ .+++|+.+.+-. .+.+++|++|.+.-.=...+..... ..-..+..+..++.+
T Consensus 586 ~~---~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e~DeLV~v 662 (957)
T PRK13979 586 FK---WKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKKGEKLIKV 662 (957)
T ss_pred CC---cCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCCCCEEEEE
Confidence 11 111112222233211 355677776653 2468889999988775433322111 112223445566655
Q ss_pred EecC-----ceEEEEecCCCEEEeeCCCCCCCCC
Q 014875 285 ALGW-----NHVLVLTGDGEVLMLGGSHHGMLSD 313 (416)
Q Consensus 285 ~~g~-----~~~~~lt~~g~vy~~G~n~~gqlG~ 313 (416)
.... .+.+++|++|.+..|-.++--.+|.
T Consensus 663 ~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 663 KLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred EEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 4432 3578899999888877665545544
No 51
>PRK05560 DNA gyrase subunit A; Validated
Probab=45.95 E-value=4.2e+02 Score=28.64 Aligned_cols=162 Identities=14% Similarity=0.033 Sum_probs=82.5
Q ss_pred eCCCeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecCC-----CeEEEEeCCCcEEEe
Q 014875 185 CGMRHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISANG-----DRSAALSAEGHLYTW 259 (416)
Q Consensus 185 ~G~~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~-----~~~~~lt~~G~vy~w 259 (416)
...++.+++|+ .|++|..-...--..+. ...-.+....+...++.+|+.+.+-. ...+++|.+|.+.--
T Consensus 546 ~t~d~LllfTs---~Grv~~l~v~~iP~~~~---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 546 STHDTLLFFTN---RGRVYRLKVYEIPEASR---TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred cCCCeEEEEec---CCeEEEEEhhhCcCCCc---CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Confidence 34456777888 89999875443222211 11111222223333455677776644 357888999977655
Q ss_pred eCCCCCCC--CCCCceecCCCCCeeEEEe--cCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCC
Q 014875 260 GRGFNSTS--DVNCPQSLPSSLSFSQAAL--GWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDG 335 (416)
Q Consensus 260 G~~~~~~~--~~~~p~~~~~~~~i~~i~~--g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~ 335 (416)
-...+... +-..-..+..+..++.+.. ...+.+++|+.|++|.+-..+--..+...... ....+ ..+
T Consensus 620 ~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv-------~~i~L--~~~ 690 (805)
T PRK05560 620 SLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGV-------RGIKL--REG 690 (805)
T ss_pred EhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCc-------ccccC--CCC
Confidence 33222110 0001111224455555443 34568999999999998665443333322110 00111 223
Q ss_pred CcEEEEecCC---CeeEEEECCCCEEEEE
Q 014875 336 VKVIQIAAGA---EHSAVVTENRAIMTWG 361 (416)
Q Consensus 336 ~~v~~i~~G~---~h~~~l~~~g~vy~wG 361 (416)
..|+.+..-. .+.+++|+.|.+.-.=
T Consensus 691 E~Vv~~~~v~~~~~~il~vTk~G~iKr~~ 719 (805)
T PRK05560 691 DEVVSMDVVREDSQEILTVTENGYGKRTP 719 (805)
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCeEEEEE
Confidence 3565554432 2567788888655443
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=44.69 E-value=2.5e+02 Score=25.78 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=73.9
Q ss_pred CCcceEEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecC---ceEEEEEeCCCEEEEc
Q 014875 75 GGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGW---NHSGFVSDSGCLFTCG 151 (416)
Q Consensus 75 G~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~---~~~~~lt~~G~v~~~G 151 (416)
+.-|-++-.. ||.||.-+.. .+.+|+-+.. ..+++.+..|. -|.+++..||..|++-
T Consensus 62 ~ap~dvapap-----dG~VWft~qg-~gaiGhLdP~--------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 62 SAPFDVAPAP-----DGAVWFTAQG-TGAIGHLDPA--------------TGEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred CCccccccCC-----CCceEEecCc-cccceecCCC--------------CCceEEEecCCCCCCceEEECCCCCeeEec
Confidence 3446667777 9999986543 2344432211 12344444443 4788888999999885
Q ss_pred CCC-CccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCC-CCCCCCCCCCCcceeecCeEe
Q 014875 152 DGT-FGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSG-KRGQLGVSKDRIRSVSLPQVT 229 (416)
Q Consensus 152 ~n~-~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n-~~gqlG~~~~~~~~~~~p~~~ 229 (416)
... .+.++-.+. ..++... -.+.+-+.-.+.+++. .|.||..|.+ .||.|-......+....|
T Consensus 122 ~~~aI~R~dpkt~----evt~f~l-----p~~~a~~nlet~vfD~---~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--- 186 (353)
T COG4257 122 TGLAIGRLDPKTL----EVTRFPL-----PLEHADANLETAVFDP---WGNLWFTGQIGAYGRLDPARNVISVFPAP--- 186 (353)
T ss_pred CcceeEEecCccc----ceEEeec-----ccccCCCcccceeeCC---CccEEEeeccccceecCcccCceeeeccC---
Confidence 432 112211111 1111110 0222333445778888 8999999874 334442221111111111
Q ss_pred cccCCCCEEEEecCCCeEEEEeCCCcEEEe
Q 014875 230 IGLHDIEIVGISANGDRSAALSAEGHLYTW 259 (416)
Q Consensus 230 ~~~~~~~i~~i~~g~~~~~~lt~~G~vy~w 259 (416)
..+.-+.++.|-+|+||.-
T Consensus 187 -----------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 -----------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred -----------CCCCCcceEECCCCcEEEE
Confidence 1245578899999999986
No 53
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.99 E-value=4.4e+02 Score=29.76 Aligned_cols=162 Identities=12% Similarity=0.106 Sum_probs=78.0
Q ss_pred EEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccCCCCEEEEecC-----CCeEEEEeCCCcEEEeeCCCCC
Q 014875 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLHDIEIVGISAN-----GDRSAALSAEGHLYTWGRGFNS 265 (416)
Q Consensus 191 ~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~wG~~~~~ 265 (416)
+.+|. |.++|.|-.+..+++-.-..-.. .-..+ ..++...| -.|.++|...-+|+..|-....
T Consensus 93 aWiTi---Dn~L~lWny~~~~e~~~~d~~sh---tIl~V------~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 93 AWITI---DNNLFLWNYESDNELAEYDGLSH---TILKV------GLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eEEEe---CCeEEEEEcCCCCccccccchhh---hheee------eeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 56777 89999998887666533211111 11111 12222222 2488889888899998864332
Q ss_pred CCCCCCceecCCCCCeeEEEe-cCceEEEE-ecCCCEEEeeCCC-------------CCCCCCC-CCC-cccCcccccee
Q 014875 266 TSDVNCPQSLPSSLSFSQAAL-GWNHVLVL-TGDGEVLMLGGSH-------------HGMLSDP-ERV-SSTRPLSVALE 328 (416)
Q Consensus 266 ~~~~~~p~~~~~~~~i~~i~~-g~~~~~~l-t~~g~vy~~G~n~-------------~gqlG~~-~~~-~~~~~~~~~~~ 328 (416)
..+...+- ...-+|.. |-+-.++. +++|+||.-|.+. +++-..- ..+ ...........
T Consensus 161 ~~~~~~~f-----~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 161 FTGELSIF-----NTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccCccccc-----ccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 22111100 00022222 33333333 5556665555432 2221000 000 00000111122
Q ss_pred eeccCCCCcEEEEecCCCeeEE--EECCCCEEEEECCCCCCcc
Q 014875 329 KVSNLDGVKVIQIAAGAEHSAV--VTENRAIMTWGWGEHGQLG 369 (416)
Q Consensus 329 ~~~~~~~~~v~~i~~G~~h~~~--l~~~g~vy~wG~n~~gqLG 369 (416)
+++......|.+|+.+....+. +++.|.|=+|=-..+|+-+
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 3332334589999999887765 5667877777666655544
No 54
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=41.68 E-value=63 Score=17.96 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=20.6
Q ss_pred CCEEEEecCCCeEEEEeCCCcEEEe
Q 014875 235 IEIVGISANGDRSAALSAEGHLYTW 259 (416)
Q Consensus 235 ~~i~~i~~g~~~~~~lt~~G~vy~w 259 (416)
+.|..|++|.....+.|+.+-|-.+
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 4689999999999999988776543
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=41.47 E-value=4e+02 Score=27.16 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=91.7
Q ss_pred ceeEeeecCCCcccEEEEeecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCC--CceEEEEeCC-CeE
Q 014875 114 YPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVN--KNVHQIACGM-RHS 190 (416)
Q Consensus 114 ~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~-~hs 190 (416)
.|..+..+......|..|.+.....+.-+.+|.|-+|=... + ..+..+.+ ..|..+..+. .+.
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~-~-------------~cl~sl~gH~~~V~sl~~~~~~~~ 385 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT-G-------------KCLKSLSGHTGRVYSLIVDSENRL 385 (537)
T ss_pred CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh-c-------------eeeeeecCCcceEEEEEecCcceE
Confidence 45556555545567999999988888889999999986441 1 12222222 3577766666 665
Q ss_pred EEEEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEeccc--CCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCC
Q 014875 191 LVLLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGL--HDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSD 268 (416)
Q Consensus 191 ~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~--~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~ 268 (416)
+=-.- |+.|-+|-....- ..+..+ ...-+..+.+-..+-+--..+|.|..|-.+..+.+.
T Consensus 386 ~Sgs~---D~~IkvWdl~~~~---------------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 386 LSGSL---DTTIKVWDLRTKR---------------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred Eeeee---ccceEeecCCchh---------------hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceee
Confidence 55555 6778888433210 111111 111223444445555555678899999555444432
Q ss_pred CCCceecCCCCCeeEEEecCceEEEEecCCCEEEe
Q 014875 269 VNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLML 303 (416)
Q Consensus 269 ~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~ 303 (416)
...- +....|..++.+....++-..+|.+..|
T Consensus 448 ~~~~---~~~~~v~~l~~~~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 448 TLEG---RHVGGVSALALGKEEILCSSDDGSVKLW 479 (537)
T ss_pred eecc---CCcccEEEeecCcceEEEEecCCeeEEE
Confidence 1111 1224566666667788888889999999
No 56
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=41.18 E-value=76 Score=29.62 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=37.9
Q ss_pred EEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeC
Q 014875 139 GFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFG 206 (416)
Q Consensus 139 ~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG 206 (416)
++..+.|+||+|-... ..+...++......+..|.|.+...+-++++.. +.++.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v-cdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV-CDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEE-eCCCcEEEEE
Confidence 3446778899997432 122244555666667789999988776554433 1189999884
No 57
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=40.82 E-value=2.7e+02 Score=25.02 Aligned_cols=152 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred EeecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCC
Q 014875 131 ISAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR 210 (416)
Q Consensus 131 i~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~ 210 (416)
|+-...+.++-..+|++.+.-.++ .+.......-..+..-..-.+.+|-.++.-.+|.+.--+ |.||.|=.|+.
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~s--l~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd----G~V~gw~W~E~ 91 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKS--LDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD----GLVYGWEWNEE 91 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehh--hhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC----ceEEEeeehhh
Q ss_pred CC-CCCCCCCcceeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeCCCCCCCCCCCceecCCCCCeeEEEec--
Q 014875 211 GQ-LGVSKDRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALG-- 287 (416)
Q Consensus 211 gq-lG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~~i~~i~~g-- 287 (416)
-. ++.-..-....+...-....++++...+.-..+..+.---|+.+|+|-. +.-+|+...-|
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl---------------E~G~i~r~~rGHt 156 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL---------------EDGRIQREYRGHT 156 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe---------------cCCEEEEEEcCCc
Q ss_pred -CceEEEE----------ecCCCEEEe
Q 014875 288 -WNHVLVL----------TGDGEVLML 303 (416)
Q Consensus 288 -~~~~~~l----------t~~g~vy~~ 303 (416)
+-|+++. .+||.+-.|
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvW 183 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVW 183 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEE
No 58
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.28 E-value=5.9e+02 Score=28.78 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=96.6
Q ss_pred EEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeec-----CceEEEEEeCCCEEEEcCCC
Q 014875 80 LALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAG-----WNHSGFVSDSGCLFTCGDGT 154 (416)
Q Consensus 80 ~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G-----~~~~~~lt~~G~v~~~G~n~ 154 (416)
+-+|. |+++|.|-.+..+++..-+..... -..|. .++...| =.|.++|..--+|+..|-..
T Consensus 93 aWiTi-----Dn~L~lWny~~~~e~~~~d~~sht-Il~V~--------LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 93 AWITI-----DNNLFLWNYESDNELAEYDGLSHT-ILKVG--------LVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eEEEe-----CCeEEEEEcCCCCccccccchhhh-heeee--------eecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 56778 999999999887766432221110 00111 1111112 16888898888899888432
Q ss_pred C-ccccCCCCCCcccceEeeecCCCceEEEEeCCCeEEEEEeccCCCeEEEeCCCCC-------------CC----CCCC
Q 014875 155 F-GQLGHGDYRSHSSPVKVSSFVNKNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKR-------------GQ----LGVS 216 (416)
Q Consensus 155 ~-gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~-------------gq----lG~~ 216 (416)
. .+.+....... ..|. ..+..|..|.+ ++ +|+||.-|.+.. ++ .-..
T Consensus 159 ~~~~~~~~~f~~~---~~i~-~dg~~V~~I~~--------t~---nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 159 DEFTGELSIFNTS---FKIS-VDGVSVNCITY--------TE---NGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred ccccCcccccccc---eeee-cCCceEEEEEe--------cc---CCcEEEeecCCCEEEEEEeccCchhhcccccccCc
Confidence 1 11111111111 1111 12233443333 34 566665554431 11 0000
Q ss_pred CCCcceeecCeEec--ccCCCCEEEEecCCCeE--EEEeCCCcEEEeeCCCCCCCC-----------------CCCceec
Q 014875 217 KDRIRSVSLPQVTI--GLHDIEIVGISANGDRS--AALSAEGHLYTWGRGFNSTSD-----------------VNCPQSL 275 (416)
Q Consensus 217 ~~~~~~~~~p~~~~--~~~~~~i~~i~~g~~~~--~~lt~~G~vy~wG~~~~~~~~-----------------~~~p~~~ 275 (416)
...-....|..+. .....+|.+|....... .++++.|.|-+|-.+.+|.-+ ...|..-
T Consensus 224 -~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~ 302 (1311)
T KOG1900|consen 224 -KSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDD 302 (1311)
T ss_pred -hhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCC
Confidence 1111223344222 22355899999887765 456778888777655444322 1111111
Q ss_pred CCCCCeeEEE------ecCceEEEEecCC-CEEEeeC
Q 014875 276 PSSLSFSQAA------LGWNHVLVLTGDG-EVLMLGG 305 (416)
Q Consensus 276 ~~~~~i~~i~------~g~~~~~~lt~~g-~vy~~G~ 305 (416)
+.-.+|++|. .-+-|.+++|..| ++|.-|.
T Consensus 303 s~f~~IvsI~~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 303 SVFFSIVSISPLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccceeEEecccCcccccceeEEEEecCCeEEEEecc
Confidence 1223455543 3466889999998 6777664
No 59
>PHA02790 Kelch-like protein; Provisional
Probab=40.17 E-value=1.4e+02 Score=29.83 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=9.9
Q ss_pred ceeecEEEEEeCC
Q 014875 30 EQQVVKVWSWGAG 42 (416)
Q Consensus 30 ~~~~g~v~~wG~n 42 (416)
..-+++||+.|-.
T Consensus 315 v~~~~~iYviGG~ 327 (480)
T PHA02790 315 VPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEECCc
Confidence 4567899999953
No 60
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=40.03 E-value=3.1e+02 Score=26.26 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=12.7
Q ss_pred CeEEEEeCCCcEEEeeCC
Q 014875 245 DRSAALSAEGHLYTWGRG 262 (416)
Q Consensus 245 ~~~~~lt~~G~vy~wG~~ 262 (416)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 355555468999999874
No 61
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=39.69 E-value=6e+02 Score=28.65 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=71.1
Q ss_pred EeeecCCCcccEEEEeecCce-EEEEE--eCCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEE-eCCCeEEE
Q 014875 117 PVTFFDGHRYTITHISAGWNH-SGFVS--DSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIA-CGMRHSLV 192 (416)
Q Consensus 117 ~v~~~~~~~~~i~~i~~G~~~-~~~lt--~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~-~G~~hs~~ 192 (416)
+|..+-.....+.+++....| +++++ +||.|-+|-.-. -.|.+.. .+.. ..-.+.+.++.++. |+..+.+|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s-~rS~--ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGS-ARSE--LTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcce-eeee--EEEeccCCceEEEEeccCCCeEE
Confidence 444444344567788888888 78875 789999996433 2222111 1111 11112345666664 67777777
Q ss_pred EEeccCCCeEEEeCCCCCCCCCCCCCCcceeecCeEecccC-CCCEEEEecCC----C-eEEEEeCCCcEEEeeC
Q 014875 193 LLKDCLGNQVYGFGSGKRGQLGVSKDRIRSVSLPQVTIGLH-DIEIVGISANG----D-RSAALSAEGHLYTWGR 261 (416)
Q Consensus 193 lt~~~~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~~~~~~-~~~i~~i~~g~----~-~~~~lt~~G~vy~wG~ 261 (416)
+..+ ||.|-+.+-+.+. ..+....-..++.+. .-.++++-+-. . -.++.|..+.+..|+.
T Consensus 1115 v~t~--DG~v~~~~id~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1115 VSTK--DGSVRVLRIDHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEcC--CCeEEEEEccccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 7654 8999888765541 111112222222222 11344443321 1 3456788888988976
No 62
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=39.20 E-value=37 Score=24.46 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=29.8
Q ss_pred CceecCCCCCeeEEEec-CceEEEEecCCCEEEeeCCCCCCC
Q 014875 271 CPQSLPSSLSFSQAALG-WNHVLVLTGDGEVLMLGGSHHGML 311 (416)
Q Consensus 271 ~p~~~~~~~~i~~i~~g-~~~~~~lt~~g~vy~~G~n~~gql 311 (416)
.|..++.+..=..|+|. ....++|++||.+|.-+--+.|.+
T Consensus 8 ~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 8 HPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp --SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 46667777777889999 889999999999999986555544
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=36.71 E-value=3.2e+02 Score=24.68 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=17.4
Q ss_pred EEE-EeecCceEEEE-EeCCCEEEEcC
Q 014875 128 ITH-ISAGWNHSGFV-SDSGCLFTCGD 152 (416)
Q Consensus 128 i~~-i~~G~~~~~~l-t~~G~v~~~G~ 152 (416)
|+. +-|-..++++- ++++.|-.|-.
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEe
Confidence 444 46777777666 67888998864
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=36.46 E-value=3.8e+02 Score=25.44 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=13.8
Q ss_pred CceEEEEecCCCEEEeeC
Q 014875 288 WNHVLVLTGDGEVLMLGG 305 (416)
Q Consensus 288 ~~~~~~lt~~g~vy~~G~ 305 (416)
..+.++.+.+|.||++-.
T Consensus 320 g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCEEEEEeCCCEEEEEEC
Confidence 456777788999999854
No 65
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=33.99 E-value=40 Score=21.18 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=11.7
Q ss_pred CCeeEEEECCCCEEEEEC
Q 014875 345 AEHSAVVTENRAIMTWGW 362 (416)
Q Consensus 345 ~~h~~~l~~~g~vy~wG~ 362 (416)
..|+++...+++||.+|=
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888887889999994
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=33.27 E-value=3.7e+02 Score=24.32 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=24.4
Q ss_pred ccceEeeecCCCceEE-EEeCCCeEEEEEeccCCCeEEEeCC
Q 014875 167 SSPVKVSSFVNKNVHQ-IACGMRHSLVLLKDCLGNQVYGFGS 207 (416)
Q Consensus 167 ~~p~~v~~~~~~~i~~-i~~G~~hs~~lt~~~~~g~vy~wG~ 207 (416)
..|..+..-.+ .|+. +.|-.+|+++-..+ ++.|-.|-.
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSad--d~tVRLWD~ 172 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSAD--DKTVRLWDH 172 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeecc--CCceEEEEe
Confidence 34555554333 3554 56888888877443 899999954
No 67
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=32.89 E-value=1.8e+02 Score=28.01 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=45.6
Q ss_pred EEEEecCCCe---EEEEeCCCcEEEeeCCCCCCCCCCCceecCCCCCeeEEEecCceEEEEecCCCEEEee
Q 014875 237 IVGISANGDR---SAALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWNHVLVLTGDGEVLMLG 304 (416)
Q Consensus 237 i~~i~~g~~~---~~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G 304 (416)
++.+.++..+ .+++..+|++..|-.+....+. .....+.+|..-....+|++..|++|.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~-------~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALK-------QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCeeeEcc-------CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 4445666665 7778889999999754333321 24667999999999999999899999987
No 68
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=30.46 E-value=1.1e+02 Score=27.09 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=44.2
Q ss_pred EEEecCceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCC--eeEEEECCCCEEEE
Q 014875 283 QAALGWNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAE--HSAVVTENRAIMTW 360 (416)
Q Consensus 283 ~i~~g~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~--h~~~l~~~g~vy~w 360 (416)
.|.-.....++.+.+|.||+|-.|.+|++-. .+........-.|..+.. ..+.-..+|+++.|
T Consensus 65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 65 RVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRAC 129 (238)
T ss_pred eecccCceEEeecccceEEEecCCccchHHH---------------hhhcccccceeccccccccceeEEeccCCceeee
Confidence 3444556677888999999999997777633 111111113344556666 44455567888888
Q ss_pred ECCCCCCcc
Q 014875 361 GWGEHGQLG 369 (416)
Q Consensus 361 G~n~~gqLG 369 (416)
-.-.+-.+|
T Consensus 130 n~~p~k~~g 138 (238)
T KOG2444|consen 130 NIKPNKVLG 138 (238)
T ss_pred ccccCceee
Confidence 765444444
No 69
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.96 E-value=4.6e+02 Score=24.36 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.1
Q ss_pred eEEEEEeCCCEEEEcC
Q 014875 137 HSGFVSDSGCLFTCGD 152 (416)
Q Consensus 137 ~~~~lt~~G~v~~~G~ 152 (416)
+..+..-+++||++|-
T Consensus 164 ~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 164 QPVCVKLQNELYVFGG 179 (323)
T ss_pred cceEEEECCEEEEEcC
Confidence 3344556789999994
No 70
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=28.83 E-value=5.3e+02 Score=24.76 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.0
Q ss_pred cCceEEEEecCCCEEEee
Q 014875 287 GWNHVLVLTGDGEVLMLG 304 (416)
Q Consensus 287 g~~~~~~lt~~g~vy~~G 304 (416)
...+.++.+++|+||++-
T Consensus 375 ~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 375 ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeCCceEEEEe
Confidence 345788888999999874
No 71
>PHA02790 Kelch-like protein; Provisional
Probab=28.74 E-value=2.2e+02 Score=28.46 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=10.4
Q ss_pred EEecCCCEEEeeCC
Q 014875 293 VLTGDGEVLMLGGS 306 (416)
Q Consensus 293 ~lt~~g~vy~~G~n 306 (416)
+..-+|+||+.|..
T Consensus 358 ~~~~~g~IYviGG~ 371 (480)
T PHA02790 358 VASINNVIYVIGGH 371 (480)
T ss_pred EEEECCEEEEecCc
Confidence 33457999999874
No 72
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=28.64 E-value=35 Score=24.29 Aligned_cols=11 Identities=36% Similarity=1.280 Sum_probs=8.9
Q ss_pred EE-EEEeCCCCC
Q 014875 35 KV-WSWGAGTDG 45 (416)
Q Consensus 35 ~v-~~wG~n~~G 45 (416)
.+ |.||+|.+-
T Consensus 57 sv~waWGSNKnk 68 (84)
T PF07312_consen 57 SVYWAWGSNKNK 68 (84)
T ss_pred ceeeeeccCCCC
Confidence 46 999999764
No 73
>PLN02772 guanylate kinase
Probab=28.63 E-value=2e+02 Score=27.87 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCeEEEEEeccCCCeEEEeC-CCCCCCCCCCC----CCcceeecCeEecccCCCCEEEEecCCCeEEEEeCCCcEEEeeC
Q 014875 187 MRHSLVLLKDCLGNQVYGFG-SGKRGQLGVSK----DRIRSVSLPQVTIGLHDIEIVGISANGDRSAALSAEGHLYTWGR 261 (416)
Q Consensus 187 ~~hs~~lt~~~~~g~vy~wG-~n~~gqlG~~~----~~~~~~~~p~~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~ 261 (416)
..|+++... .++|+|| .|+.+++.... .....-..|...-..+ .+...|++++-.+.++++.+.
T Consensus 26 ~~~tav~ig----dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-------~~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 26 NRETSVTIG----DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP-------KPCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred CcceeEEEC----CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCC-------CCCCcceEEEECCceEEEEeC
Confidence 446666665 8999999 45543343221 1111112232222211 134579999999999999886
Q ss_pred C
Q 014875 262 G 262 (416)
Q Consensus 262 ~ 262 (416)
+
T Consensus 95 ~ 95 (398)
T PLN02772 95 G 95 (398)
T ss_pred C
Confidence 4
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.70 E-value=3e+02 Score=26.77 Aligned_cols=120 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred cCCCCCeEEEEeCCcceEEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEE-
Q 014875 63 LSSLSSVSMLACGGAHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFV- 141 (416)
Q Consensus 63 ~~~~~~i~~ia~G~~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~l- 141 (416)
+.....|.+++...+.-++|.+ +.+..+..|-.- +...+.+...-......|.+.-.|.+..++.
T Consensus 392 ise~~~its~~iS~d~k~~Lvn---L~~qei~LWDl~-----------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 392 ISEEQPITSFSISKDGKLALVN---LQDQEIHLWDLE-----------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred ccccCceeEEEEcCCCcEEEEE---cccCeeEEeecc-----------hhhHHHHhhcccccceEEEeccCCCCcceEEe
Q ss_pred -EeCCCEEEEcCCCCccccCCCCCCcccceEeeecCC----CceEEEEeCCCeEEEEEeccCCCeEEEeCCCCCCC
Q 014875 142 -SDSGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVN----KNVHQIACGMRHSLVLLKDCLGNQVYGFGSGKRGQ 212 (416)
Q Consensus 142 -t~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~----~~i~~i~~G~~hs~~lt~~~~~g~vy~wG~n~~gq 212 (416)
++|++||.| .+..-..+..+.+ .+.+.-.--.-+.+|-..+ ||.|-.||.....+
T Consensus 458 GSED~kvyIW--------------hr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD--DgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 458 GSEDSKVYIW--------------HRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD--DGTIRIWGPSDNNR 517 (519)
T ss_pred cCCCceEEEE--------------EccCCceeEeecCCcceeeEEecCCCCHHHhhccCC--CCeEEEecCCcccc
No 75
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.38 E-value=1e+02 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=24.1
Q ss_pred EEEEeec-CceEEEEEeCCCEEEEcCCCCccc
Q 014875 128 ITHISAG-WNHSGFVSDSGCLFTCGDGTFGQL 158 (416)
Q Consensus 128 i~~i~~G-~~~~~~lt~~G~v~~~G~n~~gql 158 (416)
=..|+|. ....++|+.||.+|.-+--..|.+
T Consensus 18 S~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 18 SISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp EEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred EEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 6789999 888999999999999886555554
No 76
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=27.24 E-value=7.6e+02 Score=26.09 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=21.8
Q ss_pred ccEEEEeecCc----eEEEEEeCCCEEEEc
Q 014875 126 YTITHISAGWN----HSGFVSDSGCLFTCG 151 (416)
Q Consensus 126 ~~i~~i~~G~~----~~~~lt~~G~v~~~G 151 (416)
..+..|+||.. .+++||..|.|.-|-
T Consensus 218 n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred chhhhhhhcCcccccceEEEecccceeeec
Confidence 45889999987 899999999887654
No 77
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.07 E-value=1.2e+02 Score=16.65 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=11.9
Q ss_pred eeEEEECCCCEEEEECC
Q 014875 347 HSAVVTENRAIMTWGWG 363 (416)
Q Consensus 347 h~~~l~~~g~vy~wG~n 363 (416)
|.+++..+|++|+.=.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56677788888876544
No 78
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=26.87 E-value=1.8e+02 Score=27.20 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=34.7
Q ss_pred EEEeCCCcEEEeeCCCCCCCCCCCceecCCCCCeeEEEecCc--eEEEEecCCCEEEeeC
Q 014875 248 AALSAEGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWN--HVLVLTGDGEVLMLGG 305 (416)
Q Consensus 248 ~~lt~~G~vy~wG~~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~lt~~g~vy~~G~ 305 (416)
++..+.|+||+|-..........+-..-.....|.+.+.... ..+++++++.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 344678999999763332221111111234567888777644 4455688999999853
No 79
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=25.44 E-value=70 Score=18.47 Aligned_cols=13 Identities=23% Similarity=0.846 Sum_probs=10.3
Q ss_pred EEEEECCCCCCcc
Q 014875 357 IMTWGWGEHGQLG 369 (416)
Q Consensus 357 vy~wG~n~~gqLG 369 (416)
+.+||+|..|.+.
T Consensus 20 lVVWGRnG~g~~~ 32 (33)
T PRK02529 20 MVVWGRNGDGSID 32 (33)
T ss_pred EEEEecCCccccC
Confidence 6789999887653
No 80
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=25.20 E-value=49 Score=25.12 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=21.5
Q ss_pred EecCCCeeEEEECCCCEEEEECCCCCC
Q 014875 341 IAAGAEHSAVVTENRAIMTWGWGEHGQ 367 (416)
Q Consensus 341 i~~G~~h~~~l~~~g~vy~wG~n~~gq 367 (416)
+..-++.+-++.++|+|.+||...+.|
T Consensus 75 ~TTkDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 75 ITTKDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CccCCceEEEEEECCEEEEEcHHhhhc
Confidence 345577888999999999999876544
No 81
>PLN02193 nitrile-specifier protein
Probab=24.69 E-value=7e+02 Score=24.79 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=12.7
Q ss_pred CCeEEEEEeccCCCeEEEeCCC
Q 014875 187 MRHSLVLLKDCLGNQVYGFGSG 208 (416)
Q Consensus 187 ~~hs~~lt~~~~~g~vy~wG~n 208 (416)
..|++++. +++||++|-.
T Consensus 270 ~~h~~~~~----~~~iYv~GG~ 287 (470)
T PLN02193 270 SFHSMAAD----EENVYVFGGV 287 (470)
T ss_pred cceEEEEE----CCEEEEECCC
Confidence 34766664 4899999853
No 82
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=24.30 E-value=86 Score=19.72 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=12.1
Q ss_pred CeEEEEEeccCCCeEEEeCCC
Q 014875 188 RHSLVLLKDCLGNQVYGFGSG 208 (416)
Q Consensus 188 ~hs~~lt~~~~~g~vy~wG~n 208 (416)
.|++++. ++++|++|--
T Consensus 4 ~hs~~~~----~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVL----DGKIYVFGGY 20 (49)
T ss_pred ceEEEEE----CCEEEEECCc
Confidence 4666655 5999999854
No 83
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.75 E-value=4.7e+02 Score=22.40 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred CeEEEEeCC--cceEEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCc--eEEEEEe
Q 014875 68 SVSMLACGG--AHVLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWN--HSGFVSD 143 (416)
Q Consensus 68 ~i~~ia~G~--~h~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--~~~~lt~ 143 (416)
.|..++... ...++... +|.++.|-..... ....+......+..+..-.. +.++...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGE--------------LLRTLKGHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCC--------------cEEEEecCCcceeEEEECCCCCEEEEEcC
Q ss_pred CCCEEEEcCCCCccccCCCCCCcccceEeeecCCCceEEEEeCC--CeEEEEEeccCCCeEEEeCCCCCCCCCCCCCCcc
Q 014875 144 SGCLFTCGDGTFGQLGHGDYRSHSSPVKVSSFVNKNVHQIACGM--RHSLVLLKDCLGNQVYGFGSGKRGQLGVSKDRIR 221 (416)
Q Consensus 144 ~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~hs~~lt~~~~~g~vy~wG~n~~gqlG~~~~~~~ 221 (416)
+|.|+.|-.... .+..........|..+.... ...++-.. +|.|+.| +..
T Consensus 72 ~~~i~i~~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~i~~~-------------~~~ 123 (289)
T cd00200 72 DKTIRLWDLETG------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSR---DKTIKVW-------------DVE 123 (289)
T ss_pred CCeEEEEEcCcc------------cceEEEeccCCcEEEEEEcCCCCEEEEecC---CCeEEEE-------------ECC
Q ss_pred eeecCeEecccCCCCEEEEecCC-CeEEEEeC-CCcEEEeeCCCCCCCCCCCceecCCCCCeeEEEecCc--eEEEEecC
Q 014875 222 SVSLPQVTIGLHDIEIVGISANG-DRSAALSA-EGHLYTWGRGFNSTSDVNCPQSLPSSLSFSQAALGWN--HVLVLTGD 297 (416)
Q Consensus 222 ~~~~p~~~~~~~~~~i~~i~~g~-~~~~~lt~-~G~vy~wG~~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~lt~~ 297 (416)
.......+. .....+..+.... ...++... +|.|+.|-........... .....+..+..... ..++...+
T Consensus 124 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 124 TGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT----GHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred CcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe----cCccccceEEECCCcCEEEEecCC
Q ss_pred CCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEEEecCCCeeEEEEC--CCCEEEE
Q 014875 298 GEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQIAAGAEHSAVVTE--NRAIMTW 360 (416)
Q Consensus 298 g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~G~~h~~~l~~--~g~vy~w 360 (416)
|.++.|-.. ...+..........+..+....+..+++.. +|.++.|
T Consensus 199 ~~i~i~d~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 199 GTIKLWDLS-----------------TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246 (289)
T ss_pred CcEEEEECC-----------------CCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEE
No 84
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=23.56 E-value=3e+02 Score=26.52 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=38.9
Q ss_pred EEeCCcc---eEEeeCCCcccCCeEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEeCCCEE
Q 014875 72 LACGGAH---VLALTSPSSVIGGKVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCLF 148 (416)
Q Consensus 72 ia~G~~h---~~~lt~~~~~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v~ 148 (416)
+.++..+ .+++.. +|++..|-.+. -+.++. .. ..+.+|.--....+|++..|+||
T Consensus 165 ~~~~~~~~~~vl~i~~-----~g~l~~w~~~~--------------Wt~l~~-~~--~~~~DIi~~kGkfYAvD~~G~l~ 222 (373)
T PLN03215 165 VKEGDNHRDGVLGIGR-----DGKINYWDGNV--------------LKALKQ-MG--YHFSDIIVHKGQTYALDSIGIVY 222 (373)
T ss_pred eecCCCcceEEEEEee-----cCcEeeecCCe--------------eeEccC-CC--ceeeEEEEECCEEEEEcCCCeEE
Confidence 4555554 556666 77887775322 122221 22 56889988888889999999999
Q ss_pred EEc
Q 014875 149 TCG 151 (416)
Q Consensus 149 ~~G 151 (416)
++.
T Consensus 223 ~i~ 225 (373)
T PLN03215 223 WIN 225 (373)
T ss_pred EEe
Confidence 886
No 85
>PF13854 Kelch_5: Kelch motif
Probab=23.46 E-value=96 Score=18.85 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=13.5
Q ss_pred CCeEEEEEeccCCCeEEEeCCCC
Q 014875 187 MRHSLVLLKDCLGNQVYGFGSGK 209 (416)
Q Consensus 187 ~~hs~~lt~~~~~g~vy~wG~n~ 209 (416)
..|++++.. +++|.+|-..
T Consensus 6 ~~hs~~~~~----~~iyi~GG~~ 24 (42)
T PF13854_consen 6 YGHSAVVVG----NNIYIFGGYS 24 (42)
T ss_pred cceEEEEEC----CEEEEEcCcc
Confidence 357777655 9999998443
No 86
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=23.29 E-value=9.7e+02 Score=25.92 Aligned_cols=210 Identities=11% Similarity=0.045 Sum_probs=100.6
Q ss_pred eecCceEEEEEeCCCEEEEcCCCCccccCCCCCCcccce--EeeecCCCceEEEEeC----C-CeEEEEEeccCCCeEEE
Q 014875 132 SAGWNHSGFVSDSGCLFTCGDGTFGQLGHGDYRSHSSPV--KVSSFVNKNVHQIACG----M-RHSLVLLKDCLGNQVYG 204 (416)
Q Consensus 132 ~~G~~~~~~lt~~G~v~~~G~n~~gqlG~~~~~~~~~p~--~v~~~~~~~i~~i~~G----~-~hs~~lt~~~~~g~vy~ 204 (416)
+....+.++.|+.|++|..-.. ++........-.|. .+....+.+|+.+.+- . ...+++|+ +|.+.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~---~GyiKR 616 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATK---NGVVKK 616 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeC---CCEEEE
Confidence 3345667888999999988322 22221111111111 1222345667776652 1 24667777 787775
Q ss_pred eCCCCCCC---CCCCCCCcceeecCeEecccCCCCEEEEe--cCCCeEEEEeCCCcEEEeeCCCCCCCC-----CCCcee
Q 014875 205 FGSGKRGQ---LGVSKDRIRSVSLPQVTIGLHDIEIVGIS--ANGDRSAALSAEGHLYTWGRGFNSTSD-----VNCPQS 274 (416)
Q Consensus 205 wG~n~~gq---lG~~~~~~~~~~~p~~~~~~~~~~i~~i~--~g~~~~~~lt~~G~vy~wG~~~~~~~~-----~~~p~~ 274 (416)
.-.+++-. .|.. .+..-.+..++.+. ......+++|++|++|..-...-...+ .. ...
T Consensus 617 i~l~~~~~~~r~G~~-----------aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~-~i~ 684 (800)
T TIGR01063 617 TSLTEFSNIRSNGII-----------AIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR-GIK 684 (800)
T ss_pred EEhHHhhhhccCCcc-----------cccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee-ccc
Confidence 53322211 1110 00000122344332 234568999999999987553322111 11 122
Q ss_pred cCCCCCeeEEEec--CceEEEEecCCCEEEeeCCCCCCCCCCCCCcccCccccceeeeccCCCCcEEE--EecCCCeeEE
Q 014875 275 LPSSLSFSQAALG--WNHVLVLTGDGEVLMLGGSHHGMLSDPERVSSTRPLSVALEKVSNLDGVKVIQ--IAAGAEHSAV 350 (416)
Q Consensus 275 ~~~~~~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~G~~h~~~ 350 (416)
+..+++|+.+..- ..+.+++|+.|.+.-.=..++-....+.. .....+...-.+ .++. +....+..++
T Consensus 685 L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~k-------Gv~~ikl~~~~d-~lv~~~~v~~~~~v~l 756 (800)
T TIGR01063 685 LKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGK-------GVKSIKITDRNG-QVVGAIAVDDDDELML 756 (800)
T ss_pred CCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCc-------ceEEEEccCCCC-eEEEEEEecCCCeEEE
Confidence 3456667666542 33567778888766654333222111100 000111111011 2222 2234456788
Q ss_pred EECCCCEEEEECCCCCC
Q 014875 351 VTENRAIMTWGWGEHGQ 367 (416)
Q Consensus 351 l~~~g~vy~wG~n~~gq 367 (416)
++++|++..+-.++--.
T Consensus 757 iT~~G~~lrf~~~eI~~ 773 (800)
T TIGR01063 757 ITSAGKLIRTSVQDVSE 773 (800)
T ss_pred EecCCeEEEeeHhhCCc
Confidence 89999888877655333
No 87
>PF13964 Kelch_6: Kelch motif
Probab=22.04 E-value=94 Score=19.56 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=12.8
Q ss_pred CeEEEEEeccCCCeEEEeCCCC
Q 014875 188 RHSLVLLKDCLGNQVYGFGSGK 209 (416)
Q Consensus 188 ~hs~~lt~~~~~g~vy~wG~n~ 209 (416)
.|+++.. +++||++|-..
T Consensus 4 ~~s~v~~----~~~iyv~GG~~ 21 (50)
T PF13964_consen 4 GHSAVVV----GGKIYVFGGYD 21 (50)
T ss_pred cCEEEEE----CCEEEEECCCC
Confidence 4666555 48999999544
No 88
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=21.94 E-value=1e+03 Score=25.76 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCcccCC-eEEEEecCCCCccCCCCCCCeeceeEeeecCCCcccEEEEeecCceEEEEEeCCCE--EEEc
Q 014875 75 GGAHVLALTSPSSVIGG-KVFSWGRGSSGQLGHGEMVDALYPKPVTFFDGHRYTITHISAGWNHSGFVSDSGCL--FTCG 151 (416)
Q Consensus 75 G~~h~~~lt~~~~~~~g-~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~~~~~lt~~G~v--~~~G 151 (416)
++...+.++. +| .|++||.+..-.. .....+...|.-+.. .+ ..|..|+|-..|.+.-++++.| |-++
T Consensus 14 ~G~t~i~~d~-----~gefi~tcgsdg~ir~-~~~~sd~e~P~ti~~-~g--~~v~~ia~~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 14 GGLTLICYDP-----DGEFICTCGSDGDIRK-WKTNSDEEEPETIDI-SG--ELVSSIACYSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred CceEEEEEcC-----CCCEEEEecCCCceEE-eecCCcccCCchhhc-cC--ceeEEEeecccceEEeeccceEEEeeCC
Confidence 3344455565 44 4667776532111 111112355555553 22 5688999988888888888874 5444
Q ss_pred C
Q 014875 152 D 152 (416)
Q Consensus 152 ~ 152 (416)
.
T Consensus 85 s 85 (933)
T KOG1274|consen 85 S 85 (933)
T ss_pred C
Confidence 3
Done!