Query 014876
Match_columns 416
No_of_seqs 315 out of 1817
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10671 copA copper exporting 99.3 4.7E-11 1E-15 132.7 16.2 157 52-218 3-162 (834)
2 PF00403 HMA: Heavy-metal-asso 99.1 1.8E-10 3.9E-15 87.8 8.1 57 159-216 1-62 (62)
3 KOG0207 Cation transport ATPas 99.1 3.4E-10 7.4E-15 124.9 13.4 179 59-294 2-187 (951)
4 KOG1603 Copper chaperone [Inor 99.1 4.7E-10 1E-14 89.7 8.6 65 156-220 5-70 (73)
5 KOG0207 Cation transport ATPas 99.0 3E-09 6.6E-14 117.6 13.5 133 53-217 70-211 (951)
6 PF00403 HMA: Heavy-metal-asso 99.0 2.1E-09 4.5E-14 82.0 7.3 57 55-112 1-61 (62)
7 COG2608 CopZ Copper chaperone 98.9 9.7E-09 2.1E-13 81.9 8.6 63 157-220 3-70 (71)
8 KOG1603 Copper chaperone [Inor 98.8 2.7E-08 5.8E-13 79.6 7.6 65 50-114 3-67 (73)
9 COG2608 CopZ Copper chaperone 98.7 3.8E-08 8.2E-13 78.5 7.5 63 52-115 2-68 (71)
10 KOG4656 Copper chaperone for s 98.3 1.7E-06 3.7E-11 82.6 7.5 70 50-120 5-74 (247)
11 KOG4656 Copper chaperone for s 98.3 2.1E-06 4.5E-11 81.9 7.6 64 156-220 7-71 (247)
12 PRK10671 copA copper exporting 98.1 1.2E-05 2.6E-10 90.1 9.9 126 156-289 3-135 (834)
13 PLN02957 copper, zinc superoxi 97.7 0.00022 4.8E-09 69.1 9.4 64 156-220 6-70 (238)
14 COG2217 ZntA Cation transport 97.6 0.00014 3E-09 80.7 7.6 59 157-217 3-67 (713)
15 PLN02957 copper, zinc superoxi 97.3 0.00068 1.5E-08 65.8 8.0 66 52-118 6-71 (238)
16 TIGR00003 copper ion binding p 97.1 0.0048 1E-07 42.8 7.9 60 157-217 3-67 (68)
17 COG2217 ZntA Cation transport 96.8 0.0022 4.8E-08 71.4 7.0 62 52-115 2-68 (713)
18 TIGR00003 copper ion binding p 96.0 0.053 1.1E-06 37.4 7.8 44 52-95 2-46 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.2 0.049 1.1E-06 61.0 7.4 60 156-217 53-116 (741)
20 PRK11033 zntA zinc/cadmium/mer 91.8 0.4 8.6E-06 53.8 7.1 63 51-114 52-116 (741)
21 TIGR02052 MerP mercuric transp 85.2 8.1 0.00017 29.5 8.4 62 157-219 24-90 (92)
22 PRK13748 putative mercuric red 67.2 21 0.00045 38.2 8.0 61 159-220 3-67 (561)
23 cd00371 HMA Heavy-metal-associ 66.4 27 0.00058 21.2 6.8 35 163-197 6-41 (63)
24 TIGR02052 MerP mercuric transp 58.6 40 0.00087 25.5 6.3 40 55-94 26-66 (92)
25 cd00371 HMA Heavy-metal-associ 52.8 46 0.001 20.0 4.9 36 59-94 6-41 (63)
26 PF09510 Rtt102p: Rtt102p-like 47.8 12 0.00027 33.7 2.0 31 366-396 1-31 (130)
27 PF01883 DUF59: Domain of unkn 47.4 30 0.00065 26.9 3.9 33 52-84 34-72 (72)
28 PRK13748 putative mercuric red 34.0 82 0.0018 33.7 5.9 40 56-95 4-44 (561)
29 PF01883 DUF59: Domain of unkn 31.6 71 0.0015 24.8 3.8 32 156-187 34-72 (72)
30 PRK14054 methionine sulfoxide 26.4 1E+02 0.0022 29.0 4.4 27 167-193 10-37 (172)
31 COG2177 FtsX Cell division pro 26.2 2.8E+02 0.0061 28.3 7.9 89 54-188 63-152 (297)
32 COG2177 FtsX Cell division pro 24.3 3.1E+02 0.0067 28.0 7.8 48 156-216 61-109 (297)
No 1
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.29 E-value=4.7e-11 Score=132.69 Aligned_cols=157 Identities=11% Similarity=0.171 Sum_probs=112.3
Q ss_pred eEEEEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEeecchhhhhHHHhhhcccccccccccchhhhccccc
Q 014876 52 QLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPLTQMAAKRVDN 130 (416)
Q Consensus 52 ~tvvlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~vDpe~Lv~aI~kk~Gk~aeiIs~~p~~~~~~~~~ 130 (416)
++++|.| +|+|++|+.+|+++|.+++||..+.+++. +..|.+..+++.+.+.+++ .||.+++..+...+... ..+
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~-~Gy~~~~~~~~~~~~~~-~~~ 78 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQ-AGYDASVSHPKAKPLTE-SSI 78 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHh-cCCcccccccccccccc-ccc
Confidence 5789999 79999999999999999999999999994 5566666688888888886 78988765421110000 000
Q ss_pred chhHHHHHhhhcccccCCCCCCCcceEEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEeccCHHHHHHH
Q 014876 131 QISEEKLKRKKKIHRNDIGSKQTEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSY 208 (416)
Q Consensus 131 ~~~~~k~~d~~~~~~~~~e~~~~~~~tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG~vdp~~Vl~~ 208 (416)
...+.+ .... ...........++.+.| ||+|++|+..|++. ..++||.++.+|+.++++.|.+..++..+...
T Consensus 79 ~~~~~~--~~~~---~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~ 153 (834)
T PRK10671 79 PSEALT--AASE---ELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQA 153 (834)
T ss_pred Cchhhh--hhhh---hccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHH
Confidence 000000 0000 00000000113567889 99999999999999 99999999999999999888766778888888
Q ss_pred HHHhcCCceE
Q 014876 209 IKDELKKDVV 218 (416)
Q Consensus 209 L~kktGk~Ae 218 (416)
++ .+||.+.
T Consensus 154 I~-~~Gy~a~ 162 (834)
T PRK10671 154 VE-KAGYGAE 162 (834)
T ss_pred HH-hcCCCcc
Confidence 86 6899873
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.14 E-value=1.8e-10 Score=87.85 Aligned_cols=57 Identities=23% Similarity=0.494 Sum_probs=51.9
Q ss_pred EEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEec---cCHHHHHHHHHHhcCCc
Q 014876 159 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGT---VDITEVRSYIKDELKKD 216 (416)
Q Consensus 159 ~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG~---vdp~~Vl~~L~kktGk~ 216 (416)
+|.| ||+|++|+++|+++ .+++||.++.+|+.+++++|.+. +++++|.++|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 5889 99999999999999 99999999999999999999965 44599999997 79984
No 3
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.14 E-value=3.4e-10 Score=124.93 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=143.5
Q ss_pred eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEee--cchhhhhHHHhhhcccccccccccchhhhcccccchhHHH
Q 014876 59 IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGM--VDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEK 136 (416)
Q Consensus 59 gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~--vDpe~Lv~aI~kk~Gk~aeiIs~~p~~~~~~~~~~~~~~k 136 (416)
||+|..|+..|+.+++..+||.++.+++.+++++|.+. ++++.+.+.++. .|+.+.++....
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~--------------- 65 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSE--------------- 65 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCc---------------
Confidence 79999999999999999999999999999999999983 678889999887 678776554221
Q ss_pred HHhhhcccccCCCCCCCcceEEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEE--e-ccCHHHHHHHHHH
Q 014876 137 LKRKKKIHRNDIGSKQTEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--G-TVDITEVRSYIKD 211 (416)
Q Consensus 137 ~~d~~~~~~~~~e~~~~~~~tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVt--G-~vdp~~Vl~~L~k 211 (416)
....+..|.| ||+|.+|.+.|++. ++..||.++.|.+...+..|. + ...++.+.+.++
T Consensus 66 ----------------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie- 128 (951)
T KOG0207|consen 66 ----------------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE- 128 (951)
T ss_pred ----------------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-
Confidence 1113568999 99999999999999 999999999999999999986 3 367889999998
Q ss_pred hcCCceEEeccccccCCCCCCCchhhhccCCCCccCCCCccccccCCCCCCchhhHHHHHhhccceecccccCccccccc
Q 014876 212 ELKKDVVIIFPAEVVIPTKKDDGAAYKKEKDAGTTRKKDRDDKATNKKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKN 291 (416)
Q Consensus 212 ktGk~Aei~~~~~~vp~~~~~~~~~~~kk~~~g~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (416)
..|+.++++ +-+-. .+. .--.=.-+.+-|++|...|..+++. +.+|+..+.+.--+
T Consensus 129 ~~gf~a~~i---~~~~~-------------~~~----~~i~L~v~g~~c~s~~~~ie~~l~~----l~gV~~~sv~~~t~ 184 (951)
T KOG0207|consen 129 DLGFSAELI---ESVNG-------------NSN----QKIYLDVLGMTCASCVSKIESILER----LRGVKSFSVSLATD 184 (951)
T ss_pred hcCccceeh---hcccC-------------CCC----CcEEEEeecccccchhhhhHHHHhh----ccCeeEEEEeccCC
Confidence 899999665 21100 000 0111134589999999999999998 89999999887665
Q ss_pred cch
Q 014876 292 EGI 294 (416)
Q Consensus 292 ~~~ 294 (416)
.++
T Consensus 185 ~~~ 187 (951)
T KOG0207|consen 185 TAI 187 (951)
T ss_pred ceE
Confidence 544
No 4
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.09 E-value=4.7e-10 Score=89.72 Aligned_cols=65 Identities=31% Similarity=0.613 Sum_probs=59.6
Q ss_pred eEEEEEecCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEeccCHHHHHHHHHHhcCCceEEe
Q 014876 156 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 220 (416)
Q Consensus 156 ~tv~LkVGM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG~vdp~~Vl~~L~kktGk~Aei~ 220 (416)
.+.++++.|||.+|+.+|++. +.++||.++.+|..++++||.|.++|..|++.|++..++++.+|
T Consensus 5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 467888899999999999999 99999999999999999999999999999999985333888777
No 5
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.01 E-value=3e-09 Score=117.60 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=111.6
Q ss_pred EEEEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEee---cchhhhhHHHhhhcccccccccccchhhhccc
Q 014876 53 LVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGM---VDPWKIQELVEKETKKKVELIFPLTQMAAKRV 128 (416)
Q Consensus 53 tvvlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~---vDpe~Lv~aI~kk~Gk~aeiIs~~p~~~~~~~ 128 (416)
+-.|.+ ||+|..|++.|++.|+.++||.++.+.+...++.+.+. ..++.+.+.+++ .|+.++.+.....
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~-~gf~a~~i~~~~~------ 142 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIED-LGFSAELIESVNG------ 142 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHh-cCccceehhcccC------
Confidence 567777 89999999999999999999999999999999999973 467778888884 7877765532110
Q ss_pred ccchhHHHHHhhhcccccCCCCCCCcceEEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEE---eccCHH
Q 014876 129 DNQISEEKLKRKKKIHRNDIGSKQTEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVDIT 203 (416)
Q Consensus 129 ~~~~~~~k~~d~~~~~~~~~e~~~~~~~tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVt---G~vdp~ 203 (416)
....++.|.| ||.|++|+.+|++. .+++||.++++++.++++.|. -...|.
T Consensus 143 ------------------------~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr 198 (951)
T KOG0207|consen 143 ------------------------NSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPR 198 (951)
T ss_pred ------------------------CCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChH
Confidence 0014678999 99999999999999 999999999999999999986 346788
Q ss_pred HHHHHHHHhcCCce
Q 014876 204 EVRSYIKDELKKDV 217 (416)
Q Consensus 204 ~Vl~~L~kktGk~A 217 (416)
++.+.|. .+|+.+
T Consensus 199 ~i~k~ie-~~~~~~ 211 (951)
T KOG0207|consen 199 DIIKAIE-ETGFEA 211 (951)
T ss_pred HHHHHHH-hhcccc
Confidence 9999997 789988
No 6
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.96 E-value=2.1e-09 Score=81.96 Aligned_cols=57 Identities=32% Similarity=0.237 Sum_probs=50.1
Q ss_pred EEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEeecc---hhhhhHHHhhhccc
Q 014876 55 TFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVD---PWKIQELVEKETKK 112 (416)
Q Consensus 55 vlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~vD---pe~Lv~aI~kk~Gk 112 (416)
+|.| +|+|++|+.+|+++|.+++||.++.+|+.+++++|.+..+ ++++.+.|++ +||
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~-~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK-AGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH-TTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH-hCc
Confidence 5788 8999999999999999999999999999999999999543 4777888876 565
No 7
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.88 E-value=9.7e-09 Score=81.92 Aligned_cols=63 Identities=22% Similarity=0.452 Sum_probs=55.7
Q ss_pred EEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEE--e-ccCHHHHHHHHHHhcCCceEEe
Q 014876 157 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--G-TVDITEVRSYIKDELKKDVVII 220 (416)
Q Consensus 157 tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVt--G-~vdp~~Vl~~L~kktGk~Aei~ 220 (416)
...|+| ||+|.+|+..|+++ .+++||.++.||+..++++|+ + .++.++|+++|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 568999 99999999999999 999999999999999666665 5 689999999997 799998543
No 8
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.76 E-value=2.7e-08 Score=79.63 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=58.3
Q ss_pred CceEEEEEEeecChhHHHHHHHHhhccCCceEEEeecCCceEEEEeecchhhhhHHHhhhccccc
Q 014876 50 ADQLVTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKV 114 (416)
Q Consensus 50 ~~~tvvlkVgM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~vDpe~Lv~aI~kk~Gk~a 114 (416)
..++.+++++|||.+|+.+|++.|..+.||.++.+|...++++|.|.++|..+++.+.+..++.+
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~ 67 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRA 67 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCce
Confidence 35678999999999999999999999999999999999999999999999999999987443443
No 9
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.73 E-value=3.8e-08 Score=78.53 Aligned_cols=63 Identities=29% Similarity=0.186 Sum_probs=53.8
Q ss_pred eEEEEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEe---ecchhhhhHHHhhhcccccc
Q 014876 52 QLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTG---MVDPWKIQELVEKETKKKVE 115 (416)
Q Consensus 52 ~tvvlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g---~vDpe~Lv~aI~kk~Gk~ae 115 (416)
+.+.|.+ +|+|.+|+..|+++|..++||.++.+++..+++.|.+ .++.+++.++|.+ .||.+.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~-aGy~~~ 68 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED-AGYKVE 68 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH-cCCCee
Confidence 4578888 7999999999999999999999999999998877776 3577888888877 677653
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1.7e-06 Score=82.56 Aligned_cols=70 Identities=24% Similarity=0.223 Sum_probs=63.3
Q ss_pred CceEEEEEEeecChhHHHHHHHHhhccCCceEEEeecCCceEEEEeecchhhhhHHHhhhccccccccccc
Q 014876 50 ADQLVTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPL 120 (416)
Q Consensus 50 ~~~tvvlkVgM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~vDpe~Lv~aI~kk~Gk~aeiIs~~ 120 (416)
..-+++|.|.|+|++|+..|+..|..++||.++.+|+..+.+.|.+++.+..+.+.|+. +|+++.+....
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~-tGr~Avl~G~G 74 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLEN-TGRDAVLRGAG 74 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHh-hChheEEecCC
Confidence 44568999999999999999999999999999999999999999999889999999987 89988776643
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.28 E-value=2.1e-06 Score=81.95 Aligned_cols=64 Identities=19% Similarity=0.476 Sum_probs=60.1
Q ss_pred eEEEEEecCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEeccCHHHHHHHHHHhcCCceEEe
Q 014876 156 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 220 (416)
Q Consensus 156 ~tv~LkVGM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG~vdp~~Vl~~L~kktGk~Aei~ 220 (416)
-+.+|.|.|+|++|+..|+.. ..++||++++|++.++.|.|.+.+.+++|...|+ .+|++|-|.
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~ 71 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLR 71 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEe
Confidence 467899999999999999999 9999999999999999999999999999999997 799999665
No 12
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.09 E-value=1.2e-05 Score=90.05 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=80.5
Q ss_pred eEEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEeccCHHHHHHHHHHhcCCceEEeccccccCCCCCC-
Q 014876 156 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVIIFPAEVVIPTKKD- 232 (416)
Q Consensus 156 ~tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG~vdp~~Vl~~L~kktGk~Aei~~~~~~vp~~~~~- 232 (416)
++++|.| ||+|.+|+.+|+++ .+++||..+.||+. +.+|++..+++.+...++ .+||.+++..+.+. |-....
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~~~~~-~~~~~~~ 78 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSHPKAK-PLTESSI 78 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccccccc-ccccccc
Confidence 4678999 99999999999999 99999999999994 566767788999999997 79999976521110 000000
Q ss_pred Cc---hhhhccCCCCcc-CCCCccccccCCCCCCchhhHHHHHhhccceecccccCccccc
Q 014876 233 DG---AAYKKEKDAGTT-RKKDRDDKATNKKDDGNNATIDKKYRGAITVYEKFEGPSMVYK 289 (416)
Q Consensus 233 ~~---~~~~kk~~~g~~-rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (416)
.+ ...++..+.... ....-.-.-..++|..|+..|.+.+.. ..+|+..+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~----~~GV~~a~vnl~ 135 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQS----VPGVTQARVNLA 135 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhc----CCCceeeeeecC
Confidence 00 000000000000 000000123488999999998887766 677766655443
No 13
>PLN02957 copper, zinc superoxide dismutase
Probab=97.67 E-value=0.00022 Score=69.13 Aligned_cols=64 Identities=14% Similarity=0.407 Sum_probs=57.4
Q ss_pred eEEEEEecCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEeccCHHHHHHHHHHhcCCceEEe
Q 014876 156 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 220 (416)
Q Consensus 156 ~tv~LkVGM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG~vdp~~Vl~~L~kktGk~Aei~ 220 (416)
.++.|.++|+|.+|+.+|+++ .+++||..+.+|+..++++|.....+..++..|+ .+||.++++
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~ 70 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLI 70 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEe
Confidence 456788899999999999999 9999999999999999999987778888999996 799999655
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00014 Score=80.72 Aligned_cols=59 Identities=14% Similarity=0.373 Sum_probs=52.8
Q ss_pred EEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEE---eccC-HHHHHHHHHHhcCCce
Q 014876 157 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVD-ITEVRSYIKDELKKDV 217 (416)
Q Consensus 157 tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVt---G~vd-p~~Vl~~L~kktGk~A 217 (416)
+..|.| ||+|++|+++|| + .+++||..+.||+.+++++|. +..+ ++.+...++ .+||.+
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~ 67 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSA 67 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccc
Confidence 467999 999999999999 9 999999999999999999997 2355 788999996 789988
No 15
>PLN02957 copper, zinc superoxide dismutase
Probab=97.34 E-value=0.00068 Score=65.78 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=55.8
Q ss_pred eEEEEEEeecChhHHHHHHHHhhccCCceEEEeecCCceEEEEeecchhhhhHHHhhhccccccccc
Q 014876 52 QLVTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIF 118 (416)
Q Consensus 52 ~tvvlkVgM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~vDpe~Lv~aI~kk~Gk~aeiIs 118 (416)
+++.|.++|+|.+|+..|+++|.+++||..+.+++..++++|.+...+..+...++. .|+.++++.
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~-~Gy~a~~~~ 71 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQ-TGRKARLIG 71 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHH-cCCcEEEec
Confidence 557788899999999999999999999999999999999999876566677777765 677765544
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.05 E-value=0.0048 Score=42.79 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=48.9
Q ss_pred EEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEe---ccCHHHHHHHHHHhcCCce
Q 014876 157 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVDITEVRSYIKDELKKDV 217 (416)
Q Consensus 157 tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG---~vdp~~Vl~~L~kktGk~A 217 (416)
+..+.| +|+|..|+..+++. ..++++..+.+++....+.+.- ..+...+...+. ..|+.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 456889 99999999999999 9999999999999999988862 346666766664 567654
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0022 Score=71.39 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=50.7
Q ss_pred eEEEEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEee---cc-hhhhhHHHhhhcccccc
Q 014876 52 QLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGM---VD-PWKIQELVEKETKKKVE 115 (416)
Q Consensus 52 ~tvvlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~---vD-pe~Lv~aI~kk~Gk~ae 115 (416)
++..|.+ ||+|+.|+.+|| +|.+++||..+.+|+.++++.|.+. .+ ++.+...++. .||.+.
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~-~gy~~~ 68 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEK-AGYSAR 68 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHh-cCcccc
Confidence 3567888 799999999999 9999999999999999999999973 23 4566666665 566543
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.04 E-value=0.053 Score=37.39 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=39.3
Q ss_pred eEEEEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEe
Q 014876 52 QLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTG 95 (416)
Q Consensus 52 ~tvvlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g 95 (416)
+++.+.+ +|+|..|+..++..+...+++....+++....+.+.+
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEF 46 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEe
Confidence 3466888 7999999999999999999999999999999988875
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.15 E-value=0.049 Score=60.96 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=49.3
Q ss_pred eEEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEE--eccCHHHHHHHHHHhcCCce
Q 014876 156 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--GTVDITEVRSYIKDELKKDV 217 (416)
Q Consensus 156 ~tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVt--G~vdp~~Vl~~L~kktGk~A 217 (416)
.++.+.| ||+|.+|+.++++. .+++||..+.+++.++++.|. +... ..+...++ .+||.+
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~-~~I~~aI~-~~Gy~a 116 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIR-AQVESAVQ-KAGFSL 116 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccch-HHHHHHHH-hccccc
Confidence 4667889 99999999999999 999999999999999998875 2222 56666665 678876
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=91.79 E-value=0.4 Score=53.83 Aligned_cols=63 Identities=22% Similarity=0.160 Sum_probs=47.5
Q ss_pred ceEEEEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEeecc-hhhhhHHHhhhccccc
Q 014876 51 DQLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVD-PWKIQELVEKETKKKV 114 (416)
Q Consensus 51 ~~tvvlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~vD-pe~Lv~aI~kk~Gk~a 114 (416)
.+.+.+.+ +|+|.+|+..++..+..++||..+.+++.+.++.+.+..+ ...+...+.. .|+.+
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~-~Gy~a 116 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQK-AGFSL 116 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHh-ccccc
Confidence 44667888 7999999999999999999999999999999988875211 1333344443 45544
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=85.17 E-value=8.1 Score=29.51 Aligned_cols=62 Identities=11% Similarity=0.312 Sum_probs=45.5
Q ss_pred EEEEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEE--e-ccCHHHHHHHHHHhcCCceEE
Q 014876 157 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--G-TVDITEVRSYIKDELKKDVVI 219 (416)
Q Consensus 157 tv~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVt--G-~vdp~~Vl~~L~kktGk~Aei 219 (416)
++.+.+ ++.|..|...++.. ...+|+..+.+++......+. + ..+...+...+. ..|+.++|
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 90 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSSL 90 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEe
Confidence 345678 99999999999999 999999999999988876654 1 235555555553 56766543
No 22
>PRK13748 putative mercuric reductase; Provisional
Probab=67.20 E-value=21 Score=38.21 Aligned_cols=61 Identities=15% Similarity=0.347 Sum_probs=46.8
Q ss_pred EEEe-cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEe--ccCHHHHHHHHHHhcCCceEEe
Q 014876 159 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG--TVDITEVRSYIKDELKKDVVII 220 (416)
Q Consensus 159 ~LkV-GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG--~vdp~~Vl~~L~kktGk~Aei~ 220 (416)
.+.+ +|+|.+|..+++.. ..++|+..+.+++..+.+.+.. ..+...+...+. ..|+.++.+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~ 67 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLA 67 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeecc
Confidence 3567 99999999999999 9999999999999998877752 234556656654 567766444
No 23
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=66.36 E-value=27 Score=21.19 Aligned_cols=35 Identities=29% Similarity=0.618 Sum_probs=29.8
Q ss_pred cCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEE
Q 014876 163 KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK 197 (416)
Q Consensus 163 GM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVt 197 (416)
++.|..|...++.. ...+|+....+++......+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 88999999999988 888998888888877766654
No 24
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=58.60 E-value=40 Score=25.53 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=32.6
Q ss_pred EEEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEE
Q 014876 55 TFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVT 94 (416)
Q Consensus 55 vlkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~ 94 (416)
.+.+ +++|.+|...++..+...+++....+++......+.
T Consensus 26 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 26 TLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 4446 699999999999999999998888888777765554
No 25
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=52.85 E-value=46 Score=20.03 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=28.4
Q ss_pred eecChhHHHHHHHHhhccCCceEEEeecCCceEEEE
Q 014876 59 IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVT 94 (416)
Q Consensus 59 gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~ 94 (416)
++.|..|...++..+....++.....++......+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 688999999999988888887777767666654444
No 26
>PF09510 Rtt102p: Rtt102p-like transcription regulator protein; InterPro: IPR018304 Rtt102p (Regulator of Ty1 Transposition Protein 102) is a transcription regulator protein found in fungi that appears to be integrally associated with both the Swi-Snf and the RSC chromatin remodelling complexes, []. RSC is involved in transcription regulation and nucleosome positioning, and is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodelling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signalling pathway, for organisation of the cellular cytoskeleton. It is a probable component of the SWI/SNF complex, an ATP-dependent chromatin-remodelling complex, is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Probab=47.84 E-value=12 Score=33.70 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=26.8
Q ss_pred CccccCCCceecccCCccccccccccCcccc
Q 014876 366 SVMRNENPKTYLNYDGRKVNNEYDYYSPLKY 396 (416)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (416)
|+|+.-|--+|++-...++.=+||+|+|.|-
T Consensus 1 sli~~AN~~~y~~~~~~~~~W~yDWytP~k~ 31 (130)
T PF09510_consen 1 SLIERANKSGYGNSADKKIHWKYDWYTPSKS 31 (130)
T ss_pred ChhHhccccccccCCCCceeeEEeccccccc
Confidence 5677888888998888889999999999983
No 27
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=47.44 E-value=30 Score=26.92 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=22.3
Q ss_pred eEEEEEEeecChhHH------HHHHHHhhccCCceEEEe
Q 014876 52 QLVTFILIVHGYSYV------NGVELFVKQIEGVKRVKG 84 (416)
Q Consensus 52 ~tvvlkVgM~CagCA------~KIEkALskL~GV~sV~V 84 (416)
.++.+.+.+...+|. ..|+.+|..++||.+++|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 446666666665555 468899999999998875
No 28
>PRK13748 putative mercuric reductase; Provisional
Probab=34.00 E-value=82 Score=33.75 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=34.6
Q ss_pred EEE-eecChhHHHHHHHHhhccCCceEEEeecCCceEEEEe
Q 014876 56 FIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTG 95 (416)
Q Consensus 56 lkV-gM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g 95 (416)
+.+ +|+|.+|...++..+..++++....+++......+..
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~ 44 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAI 44 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEE
Confidence 446 6999999999999999999999899999888877664
No 29
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=31.56 E-value=71 Score=24.77 Aligned_cols=32 Identities=19% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEEEEecCCChhhH------HHHHHh-hcCCCceEEEe
Q 014876 156 GTYVMKIKLCCDSCN------QKLRKI-MKIKGLETVNM 187 (416)
Q Consensus 156 ~tv~LkVGM~Ca~Ca------~kIEka-~kl~GV~sV~V 187 (416)
.++.+.+-+...+|. ..|+++ ..++||.+|+|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 355666655555553 677888 89999999876
No 30
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=26.38 E-value=1e+02 Score=29.04 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=23.4
Q ss_pred hhhHHHHHHh-hcCCCceEEEeEcCCCE
Q 014876 167 DSCNQKLRKI-MKIKGLETVNMDVQEDL 193 (416)
Q Consensus 167 a~Ca~kIEka-~kl~GV~sV~VNla~~k 193 (416)
.+|=+.+|.. .+++||.++.+-++++.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 3788888999 99999999999987764
No 31
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=26.21 E-value=2.8e+02 Score=28.26 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=55.3
Q ss_pred EEEEEeecChhHHHHHHHHhhccCCceEEEeecCCceEEEEeecchhhhhHHHhhhcccccccccccchhhhcccccchh
Q 014876 54 VTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQIS 133 (416)
Q Consensus 54 vvlkVgM~CagCA~KIEkALskL~GV~sV~VDlatkkVtV~g~vDpe~Lv~aI~kk~Gk~aeiIs~~p~~~~~~~~~~~~ 133 (416)
+.+..+.+ ..|+..++..|.+++||.++.. .+.++..+.+++..|.. .... ..
T Consensus 63 vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~-~~~~-l~------------ 115 (297)
T COG2177 63 VYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFG-ALLM-LD------------ 115 (297)
T ss_pred EEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCch-hhhc-CC------------
Confidence 34444455 8999999999999999998884 35666666666655543 1100 00
Q ss_pred HHHHHhhhcccccCCCCCCCcceEEEEEecCCChhhHHHHHHh-hcCCCceEEEeE
Q 014876 134 EEKLKRKKKIHRNDIGSKQTEEGTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMD 188 (416)
Q Consensus 134 ~~k~~d~~~~~~~~~e~~~~~~~tv~LkVGM~Ca~Ca~kIEka-~kl~GV~sV~VN 188 (416)
+++ -...+.+.+ +-..-...+.++ +.++||.+|.-+
T Consensus 116 ----------~nP-------LP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~ 152 (297)
T COG2177 116 ----------ENP-------LPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDD 152 (297)
T ss_pred ----------CCC-------CCceEEEEe--CCCccHHHHHHHHHcCccceehhcc
Confidence 000 112233333 336667788888 999999988753
No 32
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=24.32 E-value=3.1e+02 Score=27.97 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=39.9
Q ss_pred eEEEEEecCCChhhHHHHHHh-hcCCCceEEEeEcCCCEEEEEeccCHHHHHHHHHHhcCCc
Q 014876 156 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKD 216 (416)
Q Consensus 156 ~tv~LkVGM~Ca~Ca~kIEka-~kl~GV~sV~VNla~~kVTVtG~vdp~~Vl~~L~kktGk~ 216 (416)
.++.+.+..+ ..|...+++. ..++||.+++. .+.++-++.+++..|..
T Consensus 61 i~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~ 109 (297)
T COG2177 61 ITVYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFG 109 (297)
T ss_pred EEEEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCch
Confidence 3566666666 9999999999 99999999885 58889999998888865
Done!