BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014877
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HK0|A Chain A, Crystal Structure Of The Ra And Ph Domains Of Grb10
pdb|3HK0|B Chain B, Crystal Structure Of The Ra And Ph Domains Of Grb10
Length = 256
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 109 FKTDYNQTHFVRN------KEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGR 162
F+ +Y + F +N ++ + + G Q+ FL S + E GFL KELG+
Sbjct: 86 FRKNYAKYEFFKNPMNFFPEQMVTWSQQSNGSQTQLLQNFLNSSSSPEIQGFLHVKELGK 145
Query: 163 R 163
+
Sbjct: 146 K 146
>pdb|3BXJ|A Chain A, Crystal Structure Of The C2-Gap Fragment Of Syngap
pdb|3BXJ|B Chain B, Crystal Structure Of The C2-Gap Fragment Of Syngap
Length = 483
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 133 GPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192
G ++Q E S F Y +LGR L + ++ E+ +S++ G L +
Sbjct: 407 GSMQQFLYEISNLDTLTNSSSFEGYIDLGRELSTLHALLWEVLPQLSKEALLKLGPLPRL 466
Query: 193 LSDFNYAL 200
LSD + AL
Sbjct: 467 LSDISTAL 474
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 20/159 (12%)
Query: 261 QDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTK 320
Q++ H D+ + L FL+DW + RF ++ V + D + F + I L ++
Sbjct: 36 QEKTPHVDYNAPLNPKSELFLDDWHIPKFNRFISFTLDVLI---DKYKDIFKDFIKLPSR 92
Query: 321 EFD------MHVIIETNRTTARIF-----PA--VLDVE----NPEFKRRLDRMVEINERL 363
+F + + N +R + P+ +LDVE N + D ++ N
Sbjct: 93 KFHPQYYYKIQQPMSINEIKSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQ 152
Query: 364 LAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDS 402
+ + ++ KNLKR LI + L YL VD+
Sbjct: 153 VVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDA 191
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 20/159 (12%)
Query: 261 QDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTK 320
Q++ H D+ + L FL+DW + RF ++ V + D + F + I L ++
Sbjct: 51 QEKTPHVDYNAPLNPKSELFLDDWHIPKFNRFISFTLDVLI---DKYKDIFKDFIKLPSR 107
Query: 321 EFD------MHVIIETNRTTARIF-----PA--VLDVE----NPEFKRRLDRMVEINERL 363
+F + + N +R + P+ +LDVE N + D ++ N
Sbjct: 108 KFHPQYYYKIQQPMSINEIKSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQ 167
Query: 364 LAVGATDDIPLVKNLKRIPLIAALASELLATYLMPPVDS 402
+ + ++ KNLKR LI + L YL VD+
Sbjct: 168 VVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDA 206
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 316 GLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINE 361
G T +F II + TA FP + PE +RL+ +E E
Sbjct: 290 GCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIE 335
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 316 GLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINE 361
G T +F II + TA FP + PE +RL+ +E E
Sbjct: 284 GCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,014,488
Number of Sequences: 62578
Number of extensions: 430653
Number of successful extensions: 1298
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 8
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)