Query 014877
Match_columns 416
No_of_seqs 112 out of 146
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 09:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02508 magnesium-protoporphy 100.0 3E-194 6E-199 1402.3 27.2 357 60-416 1-357 (357)
2 PRK13654 magnesium-protoporphy 100.0 3E-189 6E-194 1369.1 26.2 344 58-406 8-351 (355)
3 CHL00185 ycf59 magnesium-proto 100.0 7E-189 1E-193 1363.9 26.5 341 62-407 8-348 (351)
4 TIGR02029 AcsF magnesium-proto 100.0 7E-189 2E-193 1358.3 26.1 337 61-402 1-337 (337)
5 cd01047 ACSF Aerobic Cyclase S 100.0 7E-183 1E-187 1311.2 25.4 323 71-400 1-323 (323)
6 PF02915 Rubrerythrin: Rubrery 99.7 1.3E-17 2.9E-22 134.1 2.3 128 141-274 1-137 (137)
7 cd00657 Ferritin_like Ferritin 98.8 8.5E-09 1.9E-13 78.3 4.3 123 143-273 3-129 (130)
8 cd01044 Ferritin_CCC1_N Ferrit 96.8 0.002 4.3E-08 54.5 4.6 118 144-275 4-124 (125)
9 cd01046 Rubrerythrin_like rubr 96.2 0.0094 2E-07 50.9 5.3 119 139-276 2-121 (123)
10 cd07911 RNRR2_Rv0233_like Ribo 95.9 0.1 2.3E-06 49.9 11.5 201 126-336 34-263 (280)
11 cd01041 Rubrerythrin Rubreryth 95.6 0.027 5.7E-07 48.1 5.6 127 140-275 3-131 (134)
12 cd00657 Ferritin_like Ferritin 95.2 0.018 4E-07 43.7 2.9 55 137-193 76-130 (130)
13 cd07908 Mn_catalase_like Manga 95.1 0.017 3.7E-07 50.0 3.0 128 140-274 18-154 (154)
14 PF13668 Ferritin_2: Ferritin- 94.9 0.019 4.2E-07 48.6 2.7 54 139-194 83-136 (137)
15 cd01045 Ferritin_like_AB Uncha 94.7 0.018 3.8E-07 46.4 1.8 53 143-197 3-55 (139)
16 PF11583 AurF: P-aminobenzoate 94.3 0.094 2E-06 50.1 6.1 213 101-323 34-273 (304)
17 cd00907 Bacterioferritin Bacte 93.7 0.16 3.5E-06 43.2 5.6 133 137-276 4-139 (153)
18 PF00268 Ribonuc_red_sm: Ribon 93.6 0.8 1.7E-05 43.7 10.7 210 125-348 42-277 (281)
19 PF02915 Rubrerythrin: Rubrery 93.2 0.11 2.3E-06 42.1 3.7 56 135-192 81-136 (137)
20 cd01049 RNRR2 Ribonucleotide R 92.9 0.15 3.2E-06 48.2 4.6 55 135-191 141-199 (288)
21 PRK07209 ribonucleotide-diphos 92.1 1.2 2.6E-05 45.0 10.2 223 126-360 83-347 (369)
22 cd07911 RNRR2_Rv0233_like Ribo 91.1 0.11 2.4E-06 49.7 1.6 43 151-195 160-203 (280)
23 PRK08326 ribonucleotide-diphos 90.7 2.9 6.4E-05 41.3 11.0 200 126-335 51-282 (311)
24 PRK10635 bacterioferritin; Pro 90.4 0.76 1.6E-05 41.6 6.1 134 137-275 5-139 (158)
25 PRK08326 ribonucleotide-diphos 90.1 0.16 3.4E-06 50.0 1.7 42 149-192 177-219 (311)
26 cd01049 RNRR2 Ribonucleotide R 89.9 2.4 5.1E-05 40.2 9.3 207 125-348 34-280 (288)
27 PLN02492 ribonucleoside-diphos 89.4 2 4.4E-05 42.4 8.8 208 126-347 45-276 (324)
28 cd01050 Acyl_ACP_Desat Acyl AC 88.8 0.21 4.5E-06 49.8 1.6 49 144-192 153-201 (297)
29 PRK07209 ribonucleotide-diphos 88.6 0.34 7.5E-06 48.8 2.9 55 133-189 196-255 (369)
30 PF00210 Ferritin: Ferritin-li 88.5 0.49 1.1E-05 38.5 3.2 131 140-275 1-137 (142)
31 cd01045 Ferritin_like_AB Uncha 88.3 0.39 8.5E-06 38.6 2.5 51 139-191 87-137 (139)
32 COG1633 Uncharacterized conser 87.6 0.41 9E-06 44.2 2.6 57 139-197 25-81 (176)
33 PTZ00211 ribonucleoside-diphos 86.5 4.3 9.4E-05 40.3 9.1 207 126-348 56-288 (330)
34 cd01052 DPSL DPS-like protein, 85.6 1.2 2.6E-05 37.7 4.1 134 136-273 4-147 (148)
35 PRK09614 nrdF ribonucleotide-d 84.7 11 0.00024 37.0 10.8 199 125-336 45-270 (324)
36 cd07908 Mn_catalase_like Manga 84.3 0.79 1.7E-05 39.8 2.5 52 139-192 102-153 (154)
37 PRK12759 bifunctional gluaredo 83.9 8.5 0.00019 39.5 10.0 219 126-356 132-378 (410)
38 PF00268 Ribonuc_red_sm: Ribon 83.8 0.54 1.2E-05 44.8 1.4 42 151-194 165-206 (281)
39 COG0208 NrdF Ribonucleotide re 82.4 1.3 2.7E-05 45.3 3.4 54 134-189 171-228 (348)
40 cd01055 Nonheme_Ferritin nonhe 82.3 5.4 0.00012 34.4 6.8 134 139-276 4-138 (156)
41 cd01042 DMQH Demethoxyubiquino 81.5 0.94 2E-05 41.9 2.0 110 148-271 10-135 (165)
42 PRK09614 nrdF ribonucleotide-d 81.1 0.88 1.9E-05 44.5 1.8 52 137-190 151-206 (324)
43 PLN02492 ribonucleoside-diphos 79.5 1.2 2.7E-05 43.9 2.2 49 139-189 151-203 (324)
44 PTZ00211 ribonucleoside-diphos 78.7 1.3 2.7E-05 44.0 2.0 49 139-189 162-214 (330)
45 PF03405 FA_desaturase_2: Fatt 78.2 1.1 2.5E-05 45.5 1.6 45 148-192 162-207 (330)
46 PRK12775 putative trifunctiona 76.7 1.3 2.9E-05 50.1 1.7 52 141-194 863-914 (1006)
47 COG1592 Rubrerythrin [Energy p 75.5 2.8 6E-05 39.2 3.2 111 140-276 6-128 (166)
48 PRK12759 bifunctional gluaredo 75.3 2.6 5.7E-05 43.1 3.3 53 135-189 233-289 (410)
49 PF13668 Ferritin_2: Ferritin- 74.2 7 0.00015 33.2 5.0 116 146-274 9-135 (137)
50 PRK13967 nrdF1 ribonucleotide- 72.5 2 4.3E-05 42.7 1.6 44 151-196 166-210 (322)
51 PF10112 Halogen_Hydrol: 5-bro 69.1 50 0.0011 30.3 9.7 115 286-401 32-155 (199)
52 PRK13965 ribonucleotide-diphos 68.8 2.9 6.2E-05 41.9 1.7 51 135-188 164-214 (335)
53 cd01050 Acyl_ACP_Desat Acyl AC 68.4 3.7 7.9E-05 41.2 2.4 52 230-284 76-131 (297)
54 cd01048 Ferritin_like_AB2 Unch 65.5 2.6 5.7E-05 36.8 0.7 46 150-200 12-57 (135)
55 TIGR00754 bfr bacterioferritin 63.0 21 0.00047 31.2 5.9 136 136-276 4-140 (157)
56 PF11583 AurF: P-aminobenzoate 62.4 5.4 0.00012 38.3 2.2 50 146-196 178-227 (304)
57 PRK13456 DNA protection protei 59.4 26 0.00056 33.6 6.1 143 133-279 15-167 (186)
58 PRK09101 nrdB ribonucleotide-d 57.1 11 0.00024 38.4 3.4 53 135-189 190-246 (376)
59 cd07910 MiaE MiaE tRNA-modifyi 54.0 38 0.00083 32.4 6.3 112 78-197 44-160 (180)
60 TIGR02156 PA_CoA_Oxy1 phenylac 52.9 8.3 0.00018 38.7 1.8 152 129-291 15-184 (289)
61 PTZ00183 centrin; Provisional 51.8 37 0.0008 28.2 5.2 88 100-190 14-108 (158)
62 PRK13967 nrdF1 ribonucleotide- 50.9 1.1E+02 0.0024 30.7 9.2 244 93-354 12-290 (322)
63 PF08969 USP8_dimer: USP8 dime 48.7 7.4 0.00016 32.9 0.6 23 229-251 59-81 (115)
64 PF03405 FA_desaturase_2: Fatt 47.9 9.3 0.0002 39.2 1.3 27 248-274 96-122 (330)
65 PF09537 DUF2383: Domain of un 43.4 22 0.00049 29.2 2.7 58 141-200 4-61 (111)
66 PF05138 PaaA_PaaC: Phenylacet 42.2 21 0.00047 34.9 2.8 82 127-212 6-93 (263)
67 cd01051 Mn_catalase Manganese 39.6 22 0.00047 32.3 2.2 55 140-196 101-155 (156)
68 cd09012 Glo_EDI_BRP_like_24 Th 37.9 7.2 0.00016 31.4 -1.0 24 297-320 2-26 (124)
69 PRK13966 nrdF2 ribonucleotide- 36.8 1.3E+02 0.0029 30.2 7.4 236 93-347 14-285 (324)
70 PF13438 DUF4113: Domain of un 36.8 20 0.00042 27.3 1.2 20 66-86 31-50 (52)
71 PRK13966 nrdF2 ribonucleotide- 36.4 21 0.00045 35.7 1.7 37 151-189 168-204 (324)
72 PF10934 DUF2634: Protein of u 35.7 33 0.00072 29.6 2.6 63 61-124 24-92 (112)
73 cd01051 Mn_catalase Manganese 34.2 53 0.0012 29.8 3.8 115 145-275 30-153 (156)
74 COG1592 Rubrerythrin [Energy p 34.2 26 0.00057 32.9 1.9 29 168-196 101-129 (166)
75 PF07651 ANTH: ANTH domain; I 33.7 44 0.00095 31.6 3.3 102 130-233 14-124 (280)
76 PRK13778 paaA phenylacetate-Co 32.5 38 0.00083 34.6 2.9 155 127-292 31-203 (314)
77 COG1633 Uncharacterized conser 32.5 74 0.0016 29.6 4.5 55 137-193 112-166 (176)
78 KOG0036 Predicted mitochondria 32.1 57 0.0012 35.1 4.1 139 100-260 14-163 (463)
79 PF14337 DUF4393: Domain of un 31.6 44 0.00096 30.0 2.8 47 132-190 32-78 (186)
80 cd01048 Ferritin_like_AB2 Unch 30.9 37 0.0008 29.7 2.2 45 139-185 83-127 (135)
81 PRK12775 putative trifunctiona 29.5 59 0.0013 37.4 4.0 55 140-196 943-998 (1006)
82 PF12725 DUF3810: Protein of u 28.2 2.9E+02 0.0062 27.9 8.1 48 292-339 62-120 (318)
83 PF14098 SSPI: Small, acid-sol 28.0 62 0.0013 26.6 2.8 49 98-146 15-64 (65)
84 PLN00179 acyl- [acyl-carrier p 27.0 34 0.00073 36.2 1.5 25 247-271 152-176 (390)
85 COG5113 UFD2 Ubiquitin fusion 26.0 1.5E+02 0.0032 34.1 6.1 67 294-365 773-839 (929)
86 cd06432 GT8_HUGT1_C_like The C 25.6 33 0.00071 32.9 1.0 21 247-267 211-231 (248)
87 PF06175 MiaE: tRNA-(MS[2]IO[6 24.6 1.1E+02 0.0024 30.6 4.4 117 73-197 90-211 (240)
88 cd01056 Euk_Ferritin eukaryoti 24.4 1.8E+02 0.004 25.7 5.4 134 139-275 4-141 (161)
89 cd08536 SAM_PNT-Mae Sterile al 24.2 58 0.0013 26.2 2.0 55 98-164 10-65 (66)
90 cd01041 Rubrerythrin Rubreryth 23.0 78 0.0017 27.0 2.7 55 141-195 76-132 (134)
91 PLN00179 acyl- [acyl-carrier p 21.8 61 0.0013 34.4 2.1 59 131-189 185-261 (390)
92 PTZ00184 calmodulin; Provision 21.8 1.8E+02 0.0039 23.6 4.5 76 112-190 21-102 (149)
93 KOG3397 Acetyltransferases [Ge 21.7 66 0.0014 31.5 2.2 52 286-345 108-159 (225)
94 PF08763 Ca_chan_IQ: Voltage g 21.2 54 0.0012 24.2 1.2 10 252-261 15-24 (35)
95 PF03980 Nnf1: Nnf1 ; InterPr 20.9 71 0.0015 26.8 2.0 30 135-164 7-36 (109)
96 cd07235 MRD Mitomycin C resist 20.7 25 0.00054 27.9 -0.7 22 299-320 4-26 (122)
97 cd01046 Rubrerythrin_like rubr 20.4 86 0.0019 26.9 2.5 64 129-196 58-122 (123)
98 PF03232 COQ7: Ubiquinone bios 20.3 86 0.0019 29.3 2.6 117 148-270 12-140 (172)
No 1
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=100.00 E-value=3e-194 Score=1402.32 Aligned_cols=357 Identities=88% Similarity=1.394 Sum_probs=355.0
Q ss_pred CccchhhhhhhccCCCCccccChHHHhhccccccCccccHHHHHHHHHHHhhccCCCCcccCchhHHHhhcCChHHHHHH
Q 014877 60 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIF 139 (416)
Q Consensus 60 ~~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~eid~s~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~F 139 (416)
+++++|+|++||||||||||||||+|++|||++||+|++|+||+||++|||+||||+|||||+||+++|++|||++|++|
T Consensus 1 ~~~~~k~~~~etlLTPRFYTTDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~F 80 (357)
T PLN02508 1 MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIF 80 (357)
T ss_pred CCccccchhhhcccCCccccccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhh
Q 014877 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI 219 (416)
Q Consensus 140 idFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~PkfI 219 (416)
|||||||||||||||||||||+||+|++||+|+|||++||||||||||||||||+||||+||||||||+|+||||+||||
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF~PkfI 160 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFI 160 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeeeCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHHH
Q 014877 220 FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV 299 (416)
Q Consensus 220 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfa 299 (416)
|||||||||||||||||||||||+|||+||||||||||+||||||||||||+|||||||+||+||+|||||||||||||+
T Consensus 161 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa 240 (357)
T PLN02508 161 FYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV 240 (357)
T ss_pred ehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHHHHHHhhcCCChhhHhhhh
Q 014877 300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLK 379 (416)
Q Consensus 300 TMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~kl~~~~~~~~~~~~~~l~ 379 (416)
|||||||||++||++|||||++||++||++||+||+||||+|||||||+|+++||+|+++|++|.+++++++|+++|.|+
T Consensus 241 TMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~~~~~~~~~~~~~~l~ 320 (357)
T PLN02508 241 TMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKLVAIGESNDPSFVKNLK 320 (357)
T ss_pred HheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCCCccccccCCccCC
Q 014877 380 RIPLIAALASELLATYLMPPVDSGSVDFAEFEPELVY 416 (416)
Q Consensus 380 kl~~~~~~~~~~lrLyl~p~~~~~~~~~~~~~~~~~y 416 (416)
|+|+++++|++++|||+|||+++++++....+||+||
T Consensus 321 k~~~~~~~~~~~~~lyl~~~~~~~~~~~~~~~p~~~~ 357 (357)
T PLN02508 321 RIPLIARLASEILAAYLMPPVESGSVDFAEFEPQLVY 357 (357)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCCccccccCccccC
Confidence 9999999999999999999999999999999999998
No 2
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=100.00 E-value=2.8e-189 Score=1369.08 Aligned_cols=344 Identities=59% Similarity=1.061 Sum_probs=339.5
Q ss_pred CCCccchhhhhhhccCCCCccccChHHHhhccccccCccccHHHHHHHHHHHhhccCCCCcccCchhHHHhhcCChHHHH
Q 014877 58 KPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQ 137 (416)
Q Consensus 58 ~~~~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~eid~s~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~ 137 (416)
.+.++++|+|++||||||||||||||+|++| |||++|+||+|||+|||+||||+|||||+||+++||+|||++|+
T Consensus 8 ~~~~~~~k~~~~etlLTPRFYTTDF~~m~~~-----d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~ 82 (355)
T PRK13654 8 SELRPGTKAALKETILTPRFYTTDFDAMAKL-----DLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRK 82 (355)
T ss_pred ccccccccchhhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHH
Confidence 3558999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccch
Q 014877 138 IFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (416)
Q Consensus 138 ~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~Pk 217 (416)
+||||||||||||||||||||||+||+|++||+|+|||++||||||||||||||||+||||+||||||||+|+||||+||
T Consensus 83 ~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~k~YTfF~Pk 162 (355)
T PRK13654 83 EFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKKYTFFPPK 162 (355)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhccCCceeeeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCccchhhhhhHHHHHHHHHHH
Q 014877 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV 297 (416)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsV 297 (416)
|||||||||||||||||||||||||+|||+||||||||||+||||||||||||+|||||||+||+||+||||||||||||
T Consensus 163 fIfYatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsV 242 (355)
T PRK13654 163 FIFYATYLSEKIGYWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAV 242 (355)
T ss_pred eeeehhHhHhhhhHHHHHHHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHHhcCchhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHHHHHHhhcCCChhhHhh
Q 014877 298 YVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKN 377 (416)
Q Consensus 298 faTMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~kl~~~~~~~~~~~~~~ 377 (416)
|+|||||||||++||++|||||++||++||++||+||+||||+|||||||+|+++||+|+++|++|.+++++++|++++.
T Consensus 243 faTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~~~~~~~~~~~~~~ 322 (355)
T PRK13654 243 FATMYLRDHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKLRAIKASGGPKPLKK 322 (355)
T ss_pred HhheeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCccCCCcc
Q 014877 378 LKRIPLIAALASELLATYLMPPVDSGSVD 406 (416)
Q Consensus 378 l~kl~~~~~~~~~~lrLyl~p~~~~~~~~ 406 (416)
|+|+|+++++|++++|||+|||++++.+.
T Consensus 323 l~k~~~~~~~~~~~l~ly~lkP~~~~~~~ 351 (355)
T PRK13654 323 LRKLPLFASAAWQFLRLYLLKPIDKEALP 351 (355)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCccccc
Confidence 99999999999999999999999987654
No 3
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=100.00 E-value=6.7e-189 Score=1363.85 Aligned_cols=341 Identities=62% Similarity=1.081 Sum_probs=336.9
Q ss_pred cchhhhhhhccCCCCccccChHHHhhccccccCccccHHHHHHHHHHHhhccCCCCcccCchhHHHhhcCChHHHHHHHH
Q 014877 62 KSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVE 141 (416)
Q Consensus 62 ~~~k~a~~etlLTPRFYTTDFd~m~~lf~~eid~s~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~Fid 141 (416)
-++|+|++||||||||||||||+|++| |||++|+||+||++|||+||||+|||||+||+++||+||||+|++|||
T Consensus 8 ~~~k~~~~etlLTPRFYTTDF~~m~~~-----dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~Fid 82 (351)
T CHL00185 8 LQTKTPAKETLLTPRFYTTDFDEMANY-----DISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVE 82 (351)
T ss_pred hcccchhhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHH
Confidence 468999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhhh
Q 014877 142 FLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFY 221 (416)
Q Consensus 142 FLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~PkfIfY 221 (416)
|||||||||||||||||||+||+|++||+|+|||++||||||||||||||||+||||+||||||||+|+||||+||||||
T Consensus 83 FLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~rkYTfF~PkfI~Y 162 (351)
T CHL00185 83 FLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFSPKFIFY 162 (351)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCccccchhhccCCceeeecccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHHHhh
Q 014877 222 ATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTM 301 (416)
Q Consensus 222 AtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaTM 301 (416)
|||||||||||||||||||||+|||+||||||||||+||||||||||||+|||||||+||+||+|||||||||||||+||
T Consensus 163 AtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaTm 242 (351)
T CHL00185 163 ATYLSEKIGYWRYITIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFATM 242 (351)
T ss_pred hhHHHhhhhhhHHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHHHHHHhhcCCChhhHhhhhhH
Q 014877 302 YLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRI 381 (416)
Q Consensus 302 yl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~kl~~~~~~~~~~~~~~l~kl 381 (416)
|||||||++||++|||||++||++||++||+||+||||+|||||||+|+++||+|+++|++|.+++++++|++++.|+|+
T Consensus 243 yl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~~~~~~~~~~~~~~l~k~ 322 (351)
T CHL00185 243 YLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLIEIDQKESSWIWKKFIKI 322 (351)
T ss_pred eehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccCCCccc
Q 014877 382 PLIAALASELLATYLMPPVDSGSVDF 407 (416)
Q Consensus 382 ~~~~~~~~~~lrLyl~p~~~~~~~~~ 407 (416)
|+++++|++++|||+|||++++...-
T Consensus 323 ~~~~~~~~~~~~lyll~~~~~~~~~~ 348 (351)
T CHL00185 323 PLYCNLILNLIKLYLLKPIDSKAVWN 348 (351)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccc
Confidence 99999999999999999999977543
No 4
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=7.3e-189 Score=1358.29 Aligned_cols=337 Identities=65% Similarity=1.136 Sum_probs=334.3
Q ss_pred ccchhhhhhhccCCCCccccChHHHhhccccccCccccHHHHHHHHHHHhhccCCCCcccCchhHHHhhcCChHHHHHHH
Q 014877 61 KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFV 140 (416)
Q Consensus 61 ~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~eid~s~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~Fi 140 (416)
++++|+|++||||||||||||||+|++| |||++|+||+||++|||+||||+|||||+||+++|++|||++|++||
T Consensus 1 ~~~~k~~~~etlLtPRFYTTDF~~m~~~-----d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~Fi 75 (337)
T TIGR02029 1 KKGTKTASQETLLTPRFYTTDFEEMANL-----DVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFI 75 (337)
T ss_pred CCccccchhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHH
Confidence 4689999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhh
Q 014877 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIF 220 (416)
Q Consensus 141 dFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~PkfIf 220 (416)
||||||||||||||||||||+||+|++||+|+|||++||||||||||||||||+||||+||||||||+|+||||+|||||
T Consensus 76 dFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~ 155 (337)
T TIGR02029 76 EFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGLALDLGFLTKTRKYTFFRPKFIY 155 (337)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccchhhhccCCceeeeccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHHHh
Q 014877 221 YATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT 300 (416)
Q Consensus 221 YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaT 300 (416)
||||||||||||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+|||||||||||||+|
T Consensus 156 YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT 235 (337)
T TIGR02029 156 YATYLSEKIGYWRYITIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST 235 (337)
T ss_pred hhhHhHhhhhhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHHHHHHhhcCCChhhHhhhhh
Q 014877 301 MYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKR 380 (416)
Q Consensus 301 Myl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~kl~~~~~~~~~~~~~~l~k 380 (416)
||||||||++||++|||||++||++||++||+||+||||+|||||||+|+++||+|+++|++|.+++++++|+++|.|+|
T Consensus 236 myl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~~~~~~~~~~~~~~l~k 315 (337)
T TIGR02029 236 MYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKISAIEASGGPKFIKLIRR 315 (337)
T ss_pred HhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccC
Q 014877 381 IPLIAALASELLATYLMPPVDS 402 (416)
Q Consensus 381 l~~~~~~~~~~lrLyl~p~~~~ 402 (416)
+|+++++|++++|||+|||+++
T Consensus 316 ~~~~~~~~~~~~~lyl~~~~~~ 337 (337)
T TIGR02029 316 LPLMAAIAWNFLMVYLIPPKDT 337 (337)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999975
No 5
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=100.00 E-value=6.9e-183 Score=1311.18 Aligned_cols=323 Identities=76% Similarity=1.239 Sum_probs=318.9
Q ss_pred ccCCCCccccChHHHhhccccccCccccHHHHHHHHHHHhhccCCCCcccCchhHHHhhcCChHHHHHHHHHHHhhhhcc
Q 014877 71 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAE 150 (416)
Q Consensus 71 tlLTPRFYTTDFd~m~~lf~~eid~s~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaE 150 (416)
|||||||||||||+|+++ |||++|+||+||++|||+||||+|||||+||+++|++|||++|++||||||||||||
T Consensus 1 tlLtPRFYTTDF~~m~~~-----dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaE 75 (323)
T cd01047 1 TLLTPRFYTTDFDEMAAL-----DISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSE 75 (323)
T ss_pred CCCCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhh
Confidence 799999999999999996 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhhhhhhcccccc
Q 014877 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG 230 (416)
Q Consensus 151 FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~PkfIfYAtYLSEKIG 230 (416)
||||||||||+||+|++||+|+|||++||||||||||||||||+||||+||||||||+|+||||+|||||||||||||||
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~YatYLSEKIG 155 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRKYTFFKPKFIFYATYLSEKIG 155 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccchhhhccCCceeeeCccceeehhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHHHhhhhhhccchh
Q 014877 231 YWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTA 310 (416)
Q Consensus 231 YwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaTMyl~D~~R~~ 310 (416)
||||||||||||+|||+||||||||||+||||||||||||+|||||||+||+||+|||||||||||||+|||||||||++
T Consensus 156 YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaTmyl~d~~R~~ 235 (323)
T cd01047 156 YWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYATMYLNDHQRPD 235 (323)
T ss_pred hHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhheeeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChhhhhHHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHHHHHHhhcCCChhhHhhhhhHHHHHHHHHH
Q 014877 311 FYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLAVGATDDIPLVKNLKRIPLIAALASE 390 (416)
Q Consensus 311 Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~kl~~~~~~~~~~~~~~l~kl~~~~~~~~~ 390 (416)
||++|||||++||++||++||+||+||||+|||||||+|+++||+|+++|++|.+++++ +|+++|.++|+|+++++| .
T Consensus 236 Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~~~~~~-~~~~~~~l~k~~~~~~~~-~ 313 (323)
T cd01047 236 FYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPEFRRGLDRLVDLNLKLEAIGAS-APGLVKKLQRLPLIAALG-E 313 (323)
T ss_pred HHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999999999999999998 788999999999999999 8
Q ss_pred HHHHhcCCCc
Q 014877 391 LLATYLMPPV 400 (416)
Q Consensus 391 ~lrLyl~p~~ 400 (416)
++++|+++|+
T Consensus 314 ~~~~~~~~p~ 323 (323)
T cd01047 314 LIARLLMKPV 323 (323)
T ss_pred HHHHHhCCCC
Confidence 8888888874
No 6
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=99.67 E-value=1.3e-17 Score=134.08 Aligned_cols=128 Identities=29% Similarity=0.452 Sum_probs=118.2
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc-----
Q 014877 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK----- 215 (416)
Q Consensus 141 dFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~----- 215 (416)
|.|..+|..|.+|..+|++++++.++.+|.++++|..||+||.+|++++.+.+.+.+.+.+.+++.....+++++
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEE 80 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhh
Confidence 578999999999999999999999777799999999999999999999999999999999999999999999998
Q ss_pred ----chhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHH
Q 014877 216 ----PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (416)
Q Consensus 216 ----PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalm 274 (416)
+..++...+.+|+.+|..|..+.+.+.- | .+-+.|+.+++||.+|++.|..|+
T Consensus 81 ~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~-~-----~~~~~~~~l~~~E~~H~~~l~~ly 137 (137)
T PF02915_consen 81 TDENLEEALEMAIKEEKDAYEFYAELARKAPD-P-----EIRKLFEELAKEEKEHEDLLEKLY 137 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTS-H-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-H-----HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999998752 2 355779999999999999998764
No 7
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.76 E-value=8.5e-09 Score=78.27 Aligned_cols=123 Identities=22% Similarity=0.298 Sum_probs=101.7
Q ss_pred HHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccc----cccCccccccchh
Q 014877 143 LERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFL----TKARKYTFFKPKF 218 (416)
Q Consensus 143 LerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfL----tk~rkYTfF~Pkf 218 (416)
|...+..|..+...|..+..++ .||.++++|.-++.||.+|+..|++.+...|........ ...-......|.-
T Consensus 3 L~~~~~~E~~a~~~y~~~~~~~--~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00657 3 LNDALAGEYAAIIAYGQLAARA--PDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSDDPAE 80 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCCCccCHHH
Confidence 5567789999999999999999 499999999999999999999999999998877665431 1222345677888
Q ss_pred hhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHH
Q 014877 219 IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSAL 273 (416)
Q Consensus 219 IfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaal 273 (416)
++...+..|+.|...|-.+.+.++ .| .+-+.|...++||.+|.+.+..+
T Consensus 81 ~l~~~~~~E~~~~~~y~~~~~~~~-d~-----~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 81 ALRAALEVEARAIAAYRELIEQAD-DP-----ELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-Ch-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 888889999999988888887776 33 35688999999999999988654
No 8
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.75 E-value=0.002 Score=54.51 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=80.4
Q ss_pred HhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhhhhh
Q 014877 144 ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYAT 223 (416)
Q Consensus 144 erScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~PkfIfYAt 223 (416)
...+.-|-.|..+|..+++.. ++|.++++|..||.+|.+|+-++-+-+++.|...- +.+ .+. ++..
T Consensus 4 ~~~~~~E~~~~~~Y~~la~~~--~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-------~~~----~~~-~~~~ 69 (125)
T cd01044 4 RKFQKDEITEAAIYRKLAKRE--KDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-------RPK----LKI-FFYK 69 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------Ccc----HHH-HHHH
Confidence 345677999999999999998 89999999999999999999999999988776543 111 111 2223
Q ss_pred hcccccchhhHHHHHHHhhhCCCCcccchh---hhhHhhhhhcccchhHHHHHHh
Q 014877 224 YLSEKIGYWRYITIYRHLKANPEFQCYPIF---KYFENWCQDENRHGDFFSALMK 275 (416)
Q Consensus 224 YLSEKIGYwRYItIyRHLe~~Pe~r~~PIF---k~FE~WCqDEnRHGDfFaalmr 275 (416)
.|+.-.|+.--+-+=-..|++--..+.-+. .-++.=-+||-.|...+..+++
T Consensus 70 ~l~~~~g~~~~l~~~~~~E~~ai~~Y~~~~~~~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 70 LLARIFGPTFVLKLLERGEERAIEKYDRLLEERPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHhHHhhHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 455545554332222233433333333333 2557777999999998887764
No 9
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=96.20 E-value=0.0094 Score=50.90 Aligned_cols=119 Identities=22% Similarity=0.215 Sum_probs=97.9
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccch
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~Pk 217 (416)
..+.|......|....-.|..+++..+.. .|.++..|...|.+|..||+-+-+.+.... =.++
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i~----------------~~~~ 65 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKVS----------------EDTK 65 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------ccHH
Confidence 35778888899999999999999988766 899999999999999999999998764311 2456
Q ss_pred hhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhh
Q 014877 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (416)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmra 276 (416)
=++=+.+=.|+..+-.|--++++-++-- .+=+..||+.=|.+|-+|++.|..+|..
T Consensus 66 ~~le~a~~~E~~~~~~~~~~~~~A~~eg---d~~~~~~~~~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 66 ENLEMMLEGEAGANEGKKDAATEAKAEG---LDEAHDFFHEAAKDEARHGKMLKGLLER 121 (123)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777788888888888877777776654 4556788999999999999999988753
No 10
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=95.91 E-value=0.1 Score=49.86 Aligned_cols=201 Identities=14% Similarity=0.084 Sum_probs=104.9
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhc-ccCccHHHHhhccccchhhhhhhhhhhhcccccccccc
Q 014877 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLK-KTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLG 203 (416)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEF-SGflLYKEl~Rrlk-~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLg 203 (416)
.+|+.|+++.|..+.--|--=..+|- -|.-|. .+.+.+. ..+|+..-++..++=+||+|+-+-..-+..+|..-|..
T Consensus 34 ~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~-~~~~~~~~~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~ 112 (280)
T cd07911 34 EDWEQLSEEERDLALRLCAGFIAGEEAVTLDLL-PLMMAMAAEGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLS 112 (280)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 47888999888876543222122221 112222 2222121 23688889999999999999998888887777653211
Q ss_pred ccc---------------------ccCccccccchhhhhhhhcccccc-hhhHHHHHHHhhhCCCCcccc-hhhhhHhhh
Q 014877 204 FLT---------------------KARKYTFFKPKFIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYP-IFKYFENWC 260 (416)
Q Consensus 204 fLt---------------------k~rkYTfF~PkfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~P-IFk~FE~WC 260 (416)
... ..-..++.+= .+.| .++-|.|= |-=|-.|+--|++.. .-| +=+=++-=+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~-~~~lEGilf~sgF~~~~~~l~~~g---~m~g~~~~i~~I~ 187 (280)
T cd07911 113 DLHTAVYREPFYEALPYAELRLYLDASPAAQVRA-SVTY-NMIVEGVLAETGYYAWRTICEKRG---ILPGMQEGIRRLG 187 (280)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHhhcC---CCcCHHHHHHHHH
Confidence 000 0000000000 1111 22444433 333333333333321 111 112223335
Q ss_pred hhcccchhHHHHHHh----hCccchhhhhhHHHHHHHHHHHHHhhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhc
Q 014877 261 QDENRHGDFFSALMK----AQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTAR 336 (416)
Q Consensus 261 qDEnRHGDfFaalmr----aqP~ll~g~~~kLW~RFFLLsVfaTMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~r 336 (416)
.||.+|+.|+..+++ .+|++.+ +.-.+--..+-++|=.+-++.+.... .-+|+++.++...+-.+.|...++
T Consensus 188 RDE~~H~~fg~~l~~~l~~e~p~~~~-~~~e~~~~l~~~av~~~~~~~~~~~~---~~~g~~~~~~~~Y~~~~a~~rL~~ 263 (280)
T cd07911 188 DDESRHIAWGTFTCRRLVAADDANWD-VFEERMNELVPHALGLIDEIFELYDE---MPFGLDPDELMQYAVDQFQRRLGY 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHChhHHH-HHHHHHHHHHHHHHHHHHHHHHhCCC---cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999999988776 4554433 22333334455555555565554432 268888888888887777665443
No 11
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=95.62 E-value=0.027 Score=48.05 Aligned_cols=127 Identities=16% Similarity=0.101 Sum_probs=101.0
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchh
Q 014877 140 VEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF 218 (416)
Q Consensus 140 idFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~Pkf 218 (416)
++-|.+....|+...-.|..+++-.++. -|.++..|..-|-+|..||.=+-+.|.+.|...+ + -...++ ...=
T Consensus 3 ~~~L~~a~~~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-~---~~~~~~--~~~~ 76 (134)
T cd01041 3 EKNLLAAFAGESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-G---PPIGIG--DTLE 76 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-C---CCCCcc--hHHH
Confidence 3567888899999999999999988766 6999999999999999999988899999887766 1 111111 3455
Q ss_pred hhhhhhcccccch-hhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHh
Q 014877 219 IFYATYLSEKIGY-WRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (416)
Q Consensus 219 IfYAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmr 275 (416)
++=..+=.|+..+ .+|=.++++-+++-+.. .-++|+.=+.||-+|++-|..+|.
T Consensus 77 ~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~---~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 77 NLKAAIAGETYEYTEMYPEFAEVAEEEGFKE---AARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777777888655 78888888888666555 457889999999999999998774
No 12
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=95.16 E-value=0.018 Score=43.66 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhh
Q 014877 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGL 193 (416)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal 193 (416)
.-..+-|..+...|=.|.-.|+++.+.+ .+|++++++.-+..||++|..++++.+
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~~--~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQA--DDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456778888999999999999999998 499999999999999999999998764
No 13
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=95.13 E-value=0.017 Score=50.04 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=81.4
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchh-
Q 014877 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF- 218 (416)
Q Consensus 140 idFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~Pkf- 218 (416)
+.=+.--|..|.+..+.|---+.-.+.++|.++++|..+|++|-+|+++|-+-+...|-.-...-.++. .+.+|.++.
T Consensus 18 ~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~-~~~~~~~~~~ 96 (154)
T cd07908 18 LLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD-KFTYWTGKYV 96 (154)
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc-cCCcCCcccc
Confidence 333445677888888777665555555799999999999999999999999999998754443222221 122233322
Q ss_pred --------hhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHH
Q 014877 219 --------IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (416)
Q Consensus 219 --------IfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalm 274 (416)
++....-.||-+--.|=-+.... ++-... +-|+.=-.||-+|=+.|..++
T Consensus 97 ~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---~d~~~r---~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 97 NYGESIKEMLKLDIASEKAAIAKYKRQAETI---KDPYIR---ALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 44445555665555554444422 232223 345666788999988887653
No 14
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.93 E-value=0.019 Score=48.56 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=50.2
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhc
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~ 194 (416)
-.+||.-+.+-|=.|.-.|+.+..++ +||.+..++.-++-.||||++.||..|.
T Consensus 83 ~~~~L~~A~~~E~~~~~~Y~g~~~~~--~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 83 DASFLRLAYTLEDVGVSAYKGAAPQI--EDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788889999999999999999999 7999999999999999999999998875
No 15
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=94.70 E-value=0.018 Score=46.37 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=47.4
Q ss_pred HHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccc
Q 014877 143 LERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 197 (416)
Q Consensus 143 LerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~ 197 (416)
|.....-|-.|--+|..++++. .+|.++++|.-+|+||.+|+..|...+...|
T Consensus 3 l~~a~~~E~~~~~~Y~~~a~~~--~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 3 LALAIKMEEEAAEFYLELAEKA--KDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455567888899999999999 8899999999999999999999999999875
No 16
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=94.34 E-value=0.094 Score=50.09 Aligned_cols=213 Identities=14% Similarity=0.118 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhccCCCCcc-cCchh--HHHhhcCChHHHHH-----HHHHHHhhhhccccchh--hHHHHhhhhc-cc-C
Q 014877 101 EFEALLQEFKTDYNQTHFV-RNKEF--KEAADKMQGPLRQI-----FVEFLERSCTAEFSGFL--LYKELGRRLK-KT-N 168 (416)
Q Consensus 101 E~~Aml~Efr~DyNr~HFv-R~~eF--~~~~d~l~~e~R~~-----FidFLerScTaEFSGfl--LYKEl~Rrlk-~~-N 168 (416)
+|++-. .---|.++.-|- .--.| ...|+.|+++.|.+ ++-|+..-.-.|- +.+ ...-|.+..- .. .
T Consensus 34 dWd~~~-~~~~~~~~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~-~l~~~~~~~l~~~~~~~~~~ 111 (304)
T PF11583_consen 34 DWDAPD-DEDFDPDRPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQ-GLVNPAFRMLARDRFPSDPD 111 (304)
T ss_dssp -----G-GTT--TTS-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHTT-STTTT-
T ss_pred hhhhhh-cccCCCcccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCC
Confidence 466555 344466666662 11123 57899999998865 4555555555553 111 1123333332 22 2
Q ss_pred ccHHHHhhccccchhhhhhhhhhhhcccc----cccccccccccC----cccccc----chhhhhhhhcccccchhhHHH
Q 014877 169 PVVAEIFSLMSRDEARHAGFLNKGLSDFN----YALDLGFLTKAR----KYTFFK----PKFIFYATYLSEKIGYWRYIT 236 (416)
Q Consensus 169 P~lae~F~lMaRDEARHAGFlNkal~Df~----l~lDLgfLtk~r----kYTfF~----PkfIfYAtYLSEKIGYwRYIt 236 (416)
+...+-..--..||+||+=.-.+.+...| +....+...-.+ --..+. +-..|=.+.++|-|-. .
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~i~----~ 187 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEIID----A 187 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHSBH----H
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHHHH----H
Confidence 33444445557999999988888877777 332111111111 111222 2234445666776644 2
Q ss_pred HHHHhhhCCCCcccchhhhhHhhh-hhcccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHHHhhhhhhccchhHHhhc
Q 014877 237 IYRHLKANPEFQCYPIFKYFENWC-QDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGI 315 (416)
Q Consensus 237 IyRHLe~~Pe~r~~PIFk~FE~WC-qDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaTMyl~D~~R~~Fy~al 315 (416)
..|.+.+.|. +.|+.+---.=. +||.||--|+..+++..=.-++. ..+.+.+-++ .+++-+++...-.+..|...
T Consensus 188 ~~~~~~~D~~--iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~-~~r~~~~~~l-~~~~~~~~~~~~~~~~~~~~ 263 (304)
T PF11583_consen 188 YQREIARDET--IQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSP-AERRALAELL-PEAIRAFVASLINPWVYILA 263 (304)
T ss_dssp HHHHHHT-SS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H-HHHHHHHHHH-HHHHHHHHB--THHHHHHHH
T ss_pred HHHHhhcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHH-HHHHHHHHHHhcChHHHHHh
Confidence 3456666665 789977655544 79999999999888764333343 3555555553 44444556666677788888
Q ss_pred --CCChhhhh
Q 014877 316 --GLDTKEFD 323 (416)
Q Consensus 316 --Gld~~~yD 323 (416)
|+|+.+=-
T Consensus 264 ~~g~~~~~~~ 273 (304)
T PF11583_consen 264 GLGLDPRRAI 273 (304)
T ss_dssp HCT-TTHHHH
T ss_pred hcCCChHHHH
Confidence 88876533
No 17
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=93.65 E-value=0.16 Score=43.16 Aligned_cols=133 Identities=21% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc
Q 014877 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (416)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~ 215 (416)
...++.|..-...|++..+.|+-++..+++. -|.+++.|.-.|.||-+||.-|-+-+.+.|-...++-+++-+.. ..
T Consensus 4 ~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~--~~ 81 (153)
T cd00907 4 PKVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG--ED 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC--CC
Confidence 4578999999999999999999999999664 56899999999999999999999999999987777554432221 11
Q ss_pred chhhhhhhhccccc-chhhHHHHHHHhhhCCC-CcccchhhhhHhhhhhcccchhHHHHHHhh
Q 014877 216 PKFIFYATYLSEKI-GYWRYITIYRHLKANPE-FQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (416)
Q Consensus 216 PkfIfYAtYLSEKI-GYwRYItIyRHLe~~Pe-~r~~PIFk~FE~WCqDEnRHGDfFaalmra 276 (416)
+.=++ ..=| .+.=.+..|+++-+.-+ ..-...-++|+..-+||-+|..+|..++.-
T Consensus 82 ~~~~l-----~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~ 139 (153)
T cd00907 82 VPEML-----ENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDL 139 (153)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1111 12245677887643221 234455666777889999999999987764
No 18
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=93.57 E-value=0.8 Score=43.68 Aligned_cols=210 Identities=18% Similarity=0.178 Sum_probs=119.9
Q ss_pred HHHhhcCChHHHHHHHHHHHhhhhcc-ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc---
Q 014877 125 KEAADKMQGPLRQIFVEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL--- 200 (416)
Q Consensus 125 ~~~~d~l~~e~R~~FidFLerScTaE-FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~l--- 200 (416)
..+|..|+++.|..+..-|--=+.+| --|--+--.|.+.+ ++|++.-+++..+-.|+.|+=+-+..+.-++-..
T Consensus 42 ~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~ 119 (281)
T PF00268_consen 42 IKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIMPEI--TSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKER 119 (281)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 45788899999887765433222222 11112235666777 7899999999999999999988888777666111
Q ss_pred --------cccccccc-----Cccc---cccchhhhhhhhcccccc-hhhHHHHHHHhhhCCCCcccchhhhhHhhhhhc
Q 014877 201 --------DLGFLTKA-----RKYT---FFKPKFIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDE 263 (416)
Q Consensus 201 --------DLgfLtk~-----rkYT---fF~PkfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDE 263 (416)
+...|.+. +.|+ =+.=+.|++ ++-|.|- |.=|.+|+ +|.+. ..+--+=+=++-=|.||
T Consensus 120 ~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~m~g~~~~i~~I~RDE 194 (281)
T PF00268_consen 120 DEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVAS--VILEGILFYSGFAYIL-YLARQ--GKMPGLAEIIKLIMRDE 194 (281)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHH--HHHHHTTTHHHHHHHH-HHHHT--TSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHc--CcchhHHHHHHHHHHHH
Confidence 11112111 0111 011233322 2446662 33344454 56553 34555556666678999
Q ss_pred ccchhHHHHHHhhCc---cchhhhhhHHHHHHHHHHHHH-hhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcc-c
Q 014877 264 NRHGDFFSALMKAQP---QFLNDWKAKLWARFFCLSVYV-TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARI-F 338 (416)
Q Consensus 264 nRHGDfFaalmraqP---~ll~g~~~kLW~RFFLLsVfa-TMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rv-F 338 (416)
.+|++|...+++.=. +....+.. -.|-=+|=. .=|+.+.-..+ .+||++.+....|=-.+|....++ |
T Consensus 195 ~~H~~~~~~l~~~l~~e~~~~~~~i~----~l~~eav~~E~~~~~~~~~~~---~~gl~~~~~~~yi~y~an~~L~~lG~ 267 (281)
T PF00268_consen 195 SLHVEFGIYLFRTLVEENKPEEEEIY----ELFDEAVELEIEFIDDILPGD---IIGLNKEDIKQYIKYNANRRLRNLGF 267 (281)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHH----HHHHHHHHHHHHHHHTTSTGG---GTTBSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHH----HHHHHHHHHHHHHHHHHhcCC---cCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 999999998876511 11112211 111112211 22333332221 489999999999999999988776 7
Q ss_pred ccccccCChh
Q 014877 339 PAVLDVENPE 348 (416)
Q Consensus 339 P~vLdvd~P~ 348 (416)
|-+.++++|-
T Consensus 268 ~~~y~~~~~~ 277 (281)
T PF00268_consen 268 EPIYNVENPF 277 (281)
T ss_dssp --SSTTCCSS
T ss_pred CCCCCCCCCC
Confidence 7777777764
No 19
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=93.24 E-value=0.11 Score=42.10 Aligned_cols=56 Identities=25% Similarity=0.451 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhh
Q 014877 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (416)
Q Consensus 135 ~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNka 192 (416)
+..-..+-|+-.--.|=.+...|.++.+.+ .+|.++++|.-|+.||.+|.-.|-+.
T Consensus 81 ~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~--~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 81 TDENLEEALEMAIKEEKDAYEFYAELARKA--PDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344577778888888999999999999999 88999999999999999999887654
No 20
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=92.91 E-value=0.15 Score=48.22 Aligned_cols=55 Identities=38% Similarity=0.448 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhh
Q 014877 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNK 191 (416)
Q Consensus 135 ~R~~FidFLerScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNk 191 (416)
+.+.|.+.|+-++.-| +|||...--++||. .=|-+++++.+.+|||++|..|-=.
T Consensus 141 ~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~ 199 (288)
T cd01049 141 TKESFAERLVAFAILEGIFFYSGFAAIFWLARRG--KMPGLAEIIELISRDESLHGDFACL 199 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CccchHHHhHHHHccHHHHHHHHHH
Confidence 4566777777666666 58998888898876 7899999999999999999988543
No 21
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=92.15 E-value=1.2 Score=45.02 Aligned_cols=223 Identities=18% Similarity=0.198 Sum_probs=121.4
Q ss_pred HHhh---cCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc-
Q 014877 126 EAAD---KMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL- 200 (416)
Q Consensus 126 ~~~d---~l~~e~R~~FidFLerScTaEF-SGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~l- 200 (416)
++|. +|+++.|..+.-=|--=.++|- -|.-+...+.+.+ ++|++.-++...+-.|+.|+-.-..-+.-+|..=
T Consensus 83 ~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~~~i--~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~ 160 (369)
T PRK07209 83 ALWKSPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHI--TNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG 160 (369)
T ss_pred HHHccccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4675 4999999877644333223332 2333445667777 7899999999999999999976555554444322
Q ss_pred -------ccccccccCccc--cc---------------cch----hhhhhhhcccccc-hhhHHHHHHHhhhCCCCcccc
Q 014877 201 -------DLGFLTKARKYT--FF---------------KPK----FIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYP 251 (416)
Q Consensus 201 -------DLgfLtk~rkYT--fF---------------~Pk----fIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~P 251 (416)
+...|.|+-.|- ++ +.+ .|.|+. +-|.|= |.=|..|| .|.++ ...--
T Consensus 161 e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~-ilEGi~FysgFa~~~-~l~r~--g~M~G 236 (369)
T PRK07209 161 EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYC-IMEGIFFYVGFTQIL-SLGRQ--NKMTG 236 (369)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHH-Hhhhc--CCccc
Confidence 233344322210 00 000 111111 112221 22333444 55553 33333
Q ss_pred hhhhhHhhhhhcccchhHHHHHH----hhCccchhhhhhHHHHH-HHHHHHHH-hhhhhhccchhHHhhcCCChhhhhHH
Q 014877 252 IFKYFENWCQDENRHGDFFSALM----KAQPQFLNDWKAKLWAR-FFCLSVYV-TMYLNDCQRTAFYEGIGLDTKEFDMH 325 (416)
Q Consensus 252 IFk~FE~WCqDEnRHGDfFaalm----raqP~ll~g~~~kLW~R-FFLLsVfa-TMyl~D~~R~~Fy~alGld~~~yD~~ 325 (416)
+=+=++-=..||..|+.|+..|+ ...|+++.. ..+=|++ .+-=+|=. .=|..+.-. -+-+||++.+....
T Consensus 237 ~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~~~-~~~~~v~~l~~eav~~E~~~~~~~~~---~~i~Gl~~~~~~~Y 312 (369)
T PRK07209 237 IAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTA-EFQAEIRELIKEAVELEYRYARDTMP---RGVLGLNASMFKDY 312 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccH-HHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCCcCHHHHHHH
Confidence 33344444679999999986544 466766553 1122222 22222211 112222221 14799999999999
Q ss_pred HHHHhhhhhhcc-ccccc-ccCChhhHHHHHHHHHHH
Q 014877 326 VIIETNRTTARI-FPAVL-DVENPEFKRRLDRMVEIN 360 (416)
Q Consensus 326 Vi~~TN~ta~rv-FP~vL-dvd~P~F~~~Ldr~~~~n 360 (416)
|=-..|....++ +|-+. +++|| ++-++.....|
T Consensus 313 i~y~AnrrL~~LG~~~~y~~~~nP--~~wm~~~~~~~ 347 (369)
T PRK07209 313 LRFIANRRLQQIGLKPQYPGTENP--FPWMSEMIDLK 347 (369)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCc--HhHHHHHhccc
Confidence 999998887765 33333 67899 56676666554
No 22
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=91.08 E-value=0.11 Score=49.66 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.2
Q ss_pred ccchhh-HHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcc
Q 014877 151 FSGFLL-YKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD 195 (416)
Q Consensus 151 FSGflL-YKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~D 195 (416)
+|||.. +.-+++|. +-|-+++++.+.+|||+||-.|.=..+++
T Consensus 160 ~sgF~~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~fg~~l~~~ 203 (280)
T cd07911 160 ETGYYAWRTICEKRG--ILPGMQEGIRRLGDDESRHIAWGTFTCRR 203 (280)
T ss_pred HHHHHHHHHHHhhcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678855 44577765 78999999999999999999887555554
No 23
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=90.67 E-value=2.9 Score=41.25 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=100.7
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhcccc-chhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccccccc
Q 014877 126 EAADKMQGPLRQIFVEFLERSCTAEFS-GFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGF 204 (416)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEFS-GflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgf 204 (416)
.+|..|++..|..+.--|--=..+|-. ..-|-+.+..-...-.|.+.-+....+-+||+|+-+-..-+...|..=++..
T Consensus 51 ~dw~~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~~i~~~~~~~~~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~~~~ 130 (311)
T PRK08326 51 EDWEKLSDEERDYATRLCAQFIAGEEAVTLDIQPLISAMAAEGRLEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTEDLSV 130 (311)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 477889998888664322211122310 0111122221111013788888889999999999998888876666543322
Q ss_pred ccc-cCccc--cc---------------cchhhh-h--hhhcccccc-hhhHHHHHHHhhhCCCCcccc-hhhhhHhhhh
Q 014877 205 LTK-ARKYT--FF---------------KPKFIF-Y--ATYLSEKIG-YWRYITIYRHLKANPEFQCYP-IFKYFENWCQ 261 (416)
Q Consensus 205 Ltk-~rkYT--fF---------------~PkfIf-Y--AtYLSEKIG-YwRYItIyRHLe~~Pe~r~~P-IFk~FE~WCq 261 (416)
+.+ ...|. ++ +.+++- . ..++-|.|= |-=|-.|+--|++.+ .-| +=+=++-=+.
T Consensus 131 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~sgF~~~~~~l~~~~---~mpgl~~~i~~I~R 207 (311)
T PRK08326 131 YTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAETGYYAWRKICVTRG---ILPGLQELVRRIGD 207 (311)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHH
Confidence 111 00000 00 001110 0 123455543 333333333344322 122 2233444578
Q ss_pred hcccchhHHHHHHh----hCccchh---hhhhHHHHHHHHHHHHHhhhhhhccchhHHhh-cCCChhhhhHHHHHHhhhh
Q 014877 262 DENRHGDFFSALMK----AQPQFLN---DWKAKLWARFFCLSVYVTMYLNDCQRTAFYEG-IGLDTKEFDMHVIIETNRT 333 (416)
Q Consensus 262 DEnRHGDfFaalmr----aqP~ll~---g~~~kLW~RFFLLsVfaTMyl~D~~R~~Fy~a-lGld~~~yD~~Vi~~TN~t 333 (416)
||.+|+.|...+++ .+|.+.. .+...++....=+ .=|..+..... - +||++.+....|-..+|.-
T Consensus 208 DE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~----~~~~~~~~~~~---i~~Gl~~~~~~~Yi~y~an~R 280 (311)
T PRK08326 208 DERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGL----IDEIFALYGDQ---IPFELSNDEFVDYAADRGQRR 280 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH----HHHHHHhccCc---ccCCCCHHHHHHHHHHHHHHH
Confidence 99999999988877 4665433 3344444443332 22222221110 3 4888888888888777764
Q ss_pred hh
Q 014877 334 TA 335 (416)
Q Consensus 334 a~ 335 (416)
.+
T Consensus 281 L~ 282 (311)
T PRK08326 281 LG 282 (311)
T ss_pred HH
Confidence 43
No 24
>PRK10635 bacterioferritin; Provisional
Probab=90.36 E-value=0.76 Score=41.56 Aligned_cols=134 Identities=14% Similarity=0.045 Sum_probs=116.2
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc
Q 014877 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (416)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~ 215 (416)
...|+.|-+-.+.|+.....|-=.++=+++- -+.+++-|..=|.+|-+||.-|-+-+-+.|...++.-+.+-+.-+ .
T Consensus 5 ~~vi~~LN~~L~~El~Ai~QY~~ha~~~~~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g~--~ 82 (158)
T PRK10635 5 VKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNIGE--D 82 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC--C
Confidence 3578999999999999999999998888654 466787777779999999999999999999999999987766554 7
Q ss_pred chhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHh
Q 014877 216 PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (416)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmr 275 (416)
++=++-+.+=.|+.+=.+|=.+.++-++.-++--+-+|.| -..||-.|-|.+...+.
T Consensus 83 v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~---iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 83 VEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIE---ILADEEGHIDWLETELD 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998888887777666 57899999999987765
No 25
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=90.12 E-value=0.16 Score=50.03 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=33.6
Q ss_pred ccccchhhH-HHHhhhhcccCccHHHHhhccccchhhhhhhhhhh
Q 014877 149 AEFSGFLLY-KELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (416)
Q Consensus 149 aEFSGflLY-KEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNka 192 (416)
.=+|||..+ .=++||- +=|-+++++.+.+|||+||..|.=..
T Consensus 177 ~f~sgF~~~~~~l~~~~--~mpgl~~~i~~I~RDE~~H~~fg~~l 219 (311)
T PRK08326 177 LAETGYYAWRKICVTRG--ILPGLQELVRRIGDDERRHIAWGTYT 219 (311)
T ss_pred HHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888885 5677765 67999999999999999999886433
No 26
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=89.87 E-value=2.4 Score=40.20 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=113.4
Q ss_pred HHHhhcCChHHHHHHHHHHHh-----hhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccc
Q 014877 125 KEAADKMQGPLRQIFVEFLER-----SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA 199 (416)
Q Consensus 125 ~~~~d~l~~e~R~~FidFLer-----ScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~ 199 (416)
.++|..|+++.|..+..-|-- |+.++. + .++..+.- .+|+.+-++..-+-+|++|+=+-+.-+..++..
T Consensus 34 ~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~----~-~~~~~~~~-~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~ 107 (288)
T cd01049 34 LKDWEKLTEAERHFIKRVLAFLAALDSIVGEN----L-VELFSRHV-QIPEARAFYGFQAFMENIHSESYSYILDTLGKD 107 (288)
T ss_pred HHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHh----H-HHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 468889999998877654322 222222 1 22222221 589999999999999999999999888888764
Q ss_pred ----------cccccccccCcc--------------ccccchhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhh
Q 014877 200 ----------LDLGFLTKARKY--------------TFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKY 255 (416)
Q Consensus 200 ----------lDLgfLtk~rkY--------------TfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~ 255 (416)
.+...|.+.-++ ++. =+.|.| ++-|.|=+-==..+...|.++. ..-=+=+-
T Consensus 108 ~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~-~~lv~~--~~lEgi~f~s~F~~~~~l~~~g--~m~g~~~~ 182 (288)
T cd01049 108 EERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFA-ERLVAF--AILEGIFFYSGFAAIFWLARRG--KMPGLAEI 182 (288)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHCC--CccchHHH
Confidence 122223221111 111 112222 4555553211122234566643 22223344
Q ss_pred hHhhhhhcccchhHHHHHHhh----Cccch----hhhhhHHHHHHHHHHHHHhhhhhhccchhHHhhcCCChhhhhHHHH
Q 014877 256 FENWCQDENRHGDFFSALMKA----QPQFL----NDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVI 327 (416)
Q Consensus 256 FE~WCqDEnRHGDfFaalmra----qP~ll----~g~~~kLW~RFFLLsVfaTMyl~D~~R~~Fy~alGld~~~yD~~Vi 327 (416)
++.=+.||.+|+.|...+++. .|++. .+|...+...-.-+ -.=|+.+.-... .+|++..+....|-
T Consensus 183 i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av~~---E~~~~~~~~~~~---~~g~~~~~~~~yi~ 256 (288)
T cd01049 183 IELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVEL---EKEFARDLLPDG---ILGLNKEDMKQYIE 256 (288)
T ss_pred hHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHH---HHHHHHHhcCCC---CCCcCHHHHHHHHH
Confidence 455578999999998877664 34432 22333332221111 011233322211 68999999988888
Q ss_pred HHhhhhhhcc-ccccccc--CChh
Q 014877 328 IETNRTTARI-FPAVLDV--ENPE 348 (416)
Q Consensus 328 ~~TN~ta~rv-FP~vLdv--d~P~ 348 (416)
...|....++ +|-+.++ .||-
T Consensus 257 y~an~~l~~lG~~~~f~~~~~nP~ 280 (288)
T cd01049 257 YVANRRLENLGLEKLFNVEDKNPF 280 (288)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCH
Confidence 8888877654 3333333 6664
No 27
>PLN02492 ribonucleoside-diphosphate reductase
Probab=89.42 E-value=2 Score=42.39 Aligned_cols=208 Identities=15% Similarity=0.186 Sum_probs=107.1
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhhh---hhhhhcc------
Q 014877 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGF---LNKGLSD------ 195 (416)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEF-SGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGF---lNkal~D------ 195 (416)
++|..|+++.|..+..-|--=..+|- -|.-+...+...+ ++|+++.++..++--|+.|+-- |.+++..
T Consensus 45 ~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~ 122 (324)
T PLN02492 45 KDWEKLTDDERHFISHVLAFFAASDGIVLENLAARFMKEV--QVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKD 122 (324)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 57888999999877554433222222 2333445666667 6899999999999999999854 4555421
Q ss_pred --cccccccccccccCccc--ccc-c-----hhhhhhhhcccccc-hhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcc
Q 014877 196 --FNYALDLGFLTKARKYT--FFK-P-----KFIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDEN 264 (416)
Q Consensus 196 --f~l~lDLgfLtk~rkYT--fF~-P-----kfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEn 264 (416)
|+.-.++..|.|+-.|. +.+ + +.|-+ ++-|.|= |.=|-.|| .|.++ ..+--+=+-.+-=..||.
T Consensus 123 ~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~--~~lEgi~F~sgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE~ 197 (324)
T PLN02492 123 RLFNAIETIPCVAKKADWALRWIDSSASFAERLVAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 197 (324)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHH--HhhhHHhhhhhHHHHH-HHHHc--CCCcchHHHHHHHHhhHH
Confidence 34334566665553320 000 0 00001 0112221 11122222 33332 122222222233357999
Q ss_pred cchhHHHHHHhhCc-cchhhhhhHHHHHHHHHHHHH-hhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcc-cccc
Q 014877 265 RHGDFFSALMKAQP-QFLNDWKAKLWARFFCLSVYV-TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARI-FPAV 341 (416)
Q Consensus 265 RHGDfFaalmraqP-~ll~g~~~kLW~RFFLLsVfa-TMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rv-FP~v 341 (416)
.||.+...|.+.-- +........ .|-=+|=. .=|.++.- | -+-+||+.......|=-.+|....++ +|-+
T Consensus 198 ~H~~~~~~l~~~l~~~~~~~~v~~----l~~eav~~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~ad~~L~~lG~~~~ 270 (324)
T PLN02492 198 LHCDFACLLYSLLKNKLSEERVKE----IVCEAVEIEKEFVCDAL-P--CALVGMNADLMSQYIEFVADRLLVALGYEKV 270 (324)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHHHHHHHHHHc-C--CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999987765411 111111111 11111100 00111110 0 14689999987777877788777765 5555
Q ss_pred cccCCh
Q 014877 342 LDVENP 347 (416)
Q Consensus 342 Ldvd~P 347 (416)
.++.||
T Consensus 271 f~~~nP 276 (324)
T PLN02492 271 YNVVNP 276 (324)
T ss_pred CCCCCC
Confidence 577888
No 28
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=88.85 E-value=0.21 Score=49.83 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=40.6
Q ss_pred HhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhh
Q 014877 144 ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (416)
Q Consensus 144 erScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNka 192 (416)
+=-|.-|-...+-|.-+++..+...|.|+++-+..|+||+||..|--+-
T Consensus 153 ~y~~fqE~aT~v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~ 201 (297)
T cd01050 153 VYTSFQELATRISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDI 201 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777899999999887669999999999999999998875443
No 29
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=88.63 E-value=0.34 Score=48.79 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHh-hhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 014877 133 GPLRQIFVEFLER-SCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 133 ~e~R~~FidFLer-ScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFl 189 (416)
++.++.|+.-|+- ||.-| +|||...--++||. +=|-+++++++.+|||..|..|.
T Consensus 196 ~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g--~M~G~~~~i~~I~RDE~~H~~f~ 255 (369)
T PRK07209 196 PENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQN--KMTGIAEQYQYILRDESMHLNFG 255 (369)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CcccHHHHHHHHHHHHHHHHHHH
Confidence 3456667777765 56545 78988888888875 78999999999999999999773
No 30
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=88.55 E-value=0.49 Score=38.48 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=104.5
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccC-ccHHHHhhccccchhhhhhhhhhhhccccc-----ccccccccccCcccc
Q 014877 140 VEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNY-----ALDLGFLTKARKYTF 213 (416)
Q Consensus 140 idFLerScTaEFSGflLYKEl~Rrlk~~N-P~lae~F~lMaRDEARHAGFlNkal~Df~l-----~lDLgfLtk~rkYTf 213 (416)
|+=|-+-...|+.+...|+-++--.++.| |.+++.|.-+|-+|-.|+.-+.+-+.+.|. ..++.-.++... +
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~--~ 78 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE--W 78 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS--S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc--C
Confidence 45566777889999999999998887664 889999999999999999999999999999 555555555555 3
Q ss_pred ccchhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHh
Q 014877 214 FKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (416)
Q Consensus 214 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmr 275 (416)
-.|+-++=..-=+||-....|--+...-++.-+.....+ ++..-.+|.+|-..+...+.
T Consensus 79 ~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~---~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 79 TDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADF---LDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 389999999889999999999999998888766555554 43334667788777776654
No 31
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=88.34 E-value=0.39 Score=38.64 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=45.1
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhh
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNK 191 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNk 191 (416)
..+-|+.+...|=.+.-.|.++.... .+|.++++|.-|+.||.+|..-|-+
T Consensus 87 ~~~~l~~a~~~E~~~~~~Y~~~~~~~--~d~~~~~~~~~l~~~E~~H~~~l~~ 137 (139)
T cd01045 87 PLEALRLAIEIEKDAIEFYEELAEKA--EDPEVKKLFEELAEEERGHLRLLEE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999987 7899999999999999999987654
No 32
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=0.41 Score=44.21 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=50.3
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccc
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 197 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~ 197 (416)
-+|-|.-+.-+|..+.--|.++..|+ .|+.++++|.-||+||.||.|-+-+-+...+
T Consensus 25 ~~e~L~~Ai~~E~eA~~fY~~lae~~--~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~ 81 (176)
T COG1633 25 IEELLAIAIRGELEAIKFYEELAERI--EDEEIRKLFEDLADEEMRHLRKFEKLLEKLT 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777888899999999999999999 8899999999999999999998877665543
No 33
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=86.53 E-value=4.3 Score=40.27 Aligned_cols=207 Identities=14% Similarity=0.146 Sum_probs=113.8
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcc---------
Q 014877 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD--------- 195 (416)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEF-SGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~D--------- 195 (416)
++|..|+++.|..+..-|--=..+|- -|..+...+...+ ..|+++.++..++=-|+.|+---.-.+.-
T Consensus 56 ~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~--~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~ 133 (330)
T PTZ00211 56 KDWEKLNDGERHFIKHVLAFFAASDGIVLENLAQRFMREV--QVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKD 133 (330)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 57889999999988765433222221 2333444555666 67999999999999999998644333332
Q ss_pred --cccccccccccccCcccc--c--cch----hhhhhhhcccccc-hhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcc
Q 014877 196 --FNYALDLGFLTKARKYTF--F--KPK----FIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDEN 264 (416)
Q Consensus 196 --f~l~lDLgfLtk~rkYTf--F--~Pk----fIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEn 264 (416)
|+--.+...|.|+-.|.- + .+. .|.+ ++-|.|= |.=|..|| .|.++ ...--+=+-++-=+.||.
T Consensus 134 ~~f~~~~~~p~i~~K~~~~~~~~~~~~~~~~~lv~~--~~lEgi~F~sgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE~ 208 (330)
T PTZ00211 134 RLFHAIETIPAIKKKAEWAAKWINSSNSFAERLVAF--AAVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 208 (330)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhcchHHHHHHHHH--HHhhhHHhhhhHHHHH-HHHhc--CCCcchHHHHHHHHhhHH
Confidence 333344554444432210 0 011 1111 2234332 12222333 55542 233334444444578999
Q ss_pred cchhHHHHHHhh---CccchhhhhhHHHHHHHHHHHHH-hhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcc-cc
Q 014877 265 RHGDFFSALMKA---QPQFLNDWKAKLWARFFCLSVYV-TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARI-FP 339 (416)
Q Consensus 265 RHGDfFaalmra---qP~ll~g~~~kLW~RFFLLsVfa-TMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rv-FP 339 (416)
.||.|...|.+. .|. ..+...+ +.-+|=. .=|..+.-. ++-+||+..+....|=-.+|....++ +|
T Consensus 209 ~H~~f~~~l~~~l~~~~~--~~~i~~l----~~~ave~E~~~~~~~~~---~~~~Gl~~~~~~~yi~y~an~~l~~lG~~ 279 (330)
T PTZ00211 209 LHTDFACLLYSHLKNKLP--RERVQEI----IKEAVEIEREFICDALP---VDLIGMNSRLMAQYIEFVADRLLVALGVP 279 (330)
T ss_pred HHHHHHHHHHHHHhcCCC--HHHHHHH----HHHHHHHHHHHHHHHcC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999866653 221 2233333 2222211 011222211 66899999988888888888887765 55
Q ss_pred cccccCChh
Q 014877 340 AVLDVENPE 348 (416)
Q Consensus 340 ~vLdvd~P~ 348 (416)
-..+++||-
T Consensus 280 ~~f~~~nP~ 288 (330)
T PTZ00211 280 KIYNSKNPF 288 (330)
T ss_pred CcCCCCCCc
Confidence 555678993
No 34
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=85.58 E-value=1.2 Score=37.73 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccc---ccc---
Q 014877 136 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFL---TKA--- 208 (416)
Q Consensus 136 R~~FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfL---tk~--- 208 (416)
++..++.|-.-.+.|+.....|+-+...++.. -+.+++.|.-++.+|.+||--|-+-+.+.|-....+.- ..+
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~ 83 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCK 83 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhccc
Confidence 67789999999999999999999999999766 46799999999999999999999999999988877542 211
Q ss_pred -Ccc--ccccchhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHH
Q 014877 209 -RKY--TFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSAL 273 (416)
Q Consensus 209 -rkY--TfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaal 273 (416)
.++ ....++=++.+.+=.|+..-..|--+.+.-+. -+ +..-+.++..-+||-.|=+.|.-+
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D---~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 84 CGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KD---PVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CC---hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 34455667777777888777777777766432 33 444555666778999998777654
No 35
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=84.74 E-value=11 Score=37.02 Aligned_cols=199 Identities=14% Similarity=0.143 Sum_probs=112.0
Q ss_pred HHHhhcCChHHHHHHHHHHHh-hhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc---
Q 014877 125 KEAADKMQGPLRQIFVEFLER-SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL--- 200 (416)
Q Consensus 125 ~~~~d~l~~e~R~~FidFLer-ScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~l--- 200 (416)
.++|.+|+++.|..+..-|-- ++.-..-|.-+-..+++.+ ++|+++-.+..++-.|+.|+-.-...+.-++..-
T Consensus 45 ~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~ 122 (324)
T PRK09614 45 LKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPDI--TTPEEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEID 122 (324)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 468899999999976654432 1112222223445666667 6799999999999999999977666666554432
Q ss_pred -------ccccccccCc--cccccc---h----hhhhhhhcccccch-hhHHHHHHHhhhCCCCcccchhhhhHhhhhhc
Q 014877 201 -------DLGFLTKARK--YTFFKP---K----FIFYATYLSEKIGY-WRYITIYRHLKANPEFQCYPIFKYFENWCQDE 263 (416)
Q Consensus 201 -------DLgfLtk~rk--YTfF~P---k----fIfYAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDE 263 (416)
+...|.++-+ .+++.+ + .+.+ .++-|.|=+ .=|-.|| .|.++ ...--+=+-.+-=..||
T Consensus 123 ~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~-~~~lEgi~f~sgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE 198 (324)
T PRK09614 123 EAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVA-SVFLEGFLFYSGFYYPL-YLARQ--GKMTGTAQIIRLIIRDE 198 (324)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhC--CCcccHHHHHHHHHhhh
Confidence 2233333211 111111 1 1111 233444432 2233344 77774 34444545555557899
Q ss_pred ccchhHHHHHHh----hCccchhhhhhHHHHHHHHHHHHH--hhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhc
Q 014877 264 NRHGDFFSALMK----AQPQFLNDWKAKLWARFFCLSVYV--TMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTAR 336 (416)
Q Consensus 264 nRHGDfFaalmr----aqP~ll~g~~~kLW~RFFLLsVfa--TMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~r 336 (416)
..||.|+..+++ ..|++... ..+=|++=.+.-++- .=|+++. |.-+| ++.+....|=-.+|.....
T Consensus 199 ~~H~~f~~~l~~~l~~e~~~~~~~-~~~~~v~~l~~~ave~E~~~~~~~-----~~~~G-~~~~~~~yi~y~an~~L~~ 270 (324)
T PRK09614 199 SLHGYYIGYLFQEGLEELPELEQE-ELKDEIYDLLYELYENEEAYTELL-----YDIVG-LAEDVKKYIRYNANKRLMN 270 (324)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH-----HCcCC-CHHHHHHHHHHHHHHHHHH
Confidence 999999986655 56665442 122233222222111 0122211 12889 9998888888888887765
No 36
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=84.29 E-value=0.79 Score=39.78 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=46.1
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhh
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNka 192 (416)
..+-|......|-.+.-.|+++.+++ .+|.+.+++..++.||.+|.-.|-+.
T Consensus 102 ~~~~L~~~~~~E~~ai~~Y~~~~~~~--~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 102 IKEMLKLDIASEKAAIAKYKRQAETI--KDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678888899999999999999987 78999999999999999999877543
No 37
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.89 E-value=8.5 Score=39.48 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=119.5
Q ss_pred HHhh--cCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhh---hhhhhh----cc
Q 014877 126 EAAD--KMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG---FLNKGL----SD 195 (416)
Q Consensus 126 ~~~d--~l~~e~R~~FidFLerScTaEF-SGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAG---FlNkal----~D 195 (416)
++|. +|+++.|..+..-|---..++- -|..+...+.+.+ +.|++.-.++.++--|+.|+- .|+.++ .+
T Consensus 132 ~dw~~~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~~--~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~~~~ 209 (410)
T PRK12759 132 TDWKNGKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLF--KNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE 209 (410)
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 5784 7999999877654433222222 2333445566666 679999999999999999995 455555 12
Q ss_pred cccccccccccccCccc--cccc-h-h----hhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccch
Q 014877 196 FNYALDLGFLTKARKYT--FFKP-K-F----IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHG 267 (416)
Q Consensus 196 f~l~lDLgfLtk~rkYT--fF~P-k-f----IfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHG 267 (416)
++.-++...+.+.-.|- .-++ + - +. +.++-|-|=.---.++.-.|.++ ...-=+=+-.+-=+.||.-||
T Consensus 210 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv-~~~~lEgi~Fys~Fa~~~~l~~~--g~m~g~~~~i~~I~RDE~lH~ 286 (410)
T PRK12759 210 YHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLA-KTVFNEGVALFASFAMLLNFQRF--GKMKGMGKVVEWSIRDESMHV 286 (410)
T ss_pred HHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc--CCCeeHHHHHHHHHHHHHHHH
Confidence 33333444444322221 0010 1 0 11 22223443333333333466665 223333333444468999999
Q ss_pred hHHHHHHhh----CccchhhhhhHHHHH-HHHHHHHHh-hhhhhccchhHH--hhcCCChhhhhHHHHHHhhhhhhcc-c
Q 014877 268 DFFSALMKA----QPQFLNDWKAKLWAR-FFCLSVYVT-MYLNDCQRTAFY--EGIGLDTKEFDMHVIIETNRTTARI-F 338 (416)
Q Consensus 268 DfFaalmra----qP~ll~g~~~kLW~R-FFLLsVfaT-Myl~D~~R~~Fy--~alGld~~~yD~~Vi~~TN~ta~rv-F 338 (416)
+|+..|.+. .|++.+. ..+=|++ .+-=+|=.= =|+++ .|- .-+||++.+....|=-.+|....++ +
T Consensus 287 ~~~~~l~~~l~~e~p~~~~~-~~~~~v~~~~~eave~E~~~~~~----~~~~~~i~Gl~~~~~~~Yiky~an~~L~~LG~ 361 (410)
T PRK12759 287 EGNAALFRIYCQENPYIVDN-EFKKEIYLMASKAVELEDRFIEL----AYELGTIEGLKADEVKQYIRHITDRRLNQLGL 361 (410)
T ss_pred HHHHHHHHHHHHhChhhcCh-HHHHHHHHHHHHHHHHHHHHHHH----HcCCCCcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 999888763 4654332 1111222 111111000 01111 111 2679999999999999999988876 6
Q ss_pred cccccc-CChhhHHHHHHH
Q 014877 339 PAVLDV-ENPEFKRRLDRM 356 (416)
Q Consensus 339 P~vLdv-d~P~F~~~Ldr~ 356 (416)
|-..++ .|| .+-|+..
T Consensus 362 ~~~f~~~~nP--~~w~~~~ 378 (410)
T PRK12759 362 KEIYNIEKNP--LTWLEWI 378 (410)
T ss_pred CCCCCCCCCC--hhHHHHH
Confidence 666676 788 3555543
No 38
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=83.79 E-value=0.54 Score=44.79 Aligned_cols=42 Identities=36% Similarity=0.422 Sum_probs=35.5
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhc
Q 014877 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (416)
Q Consensus 151 FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~ 194 (416)
+|||....-++++. +=|-+++++.+..|||++|..|.-..++
T Consensus 165 ~s~F~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~l~~ 206 (281)
T PF00268_consen 165 YSGFAYILYLARQG--KMPGLAEIIKLIMRDESLHVEFGIYLFR 206 (281)
T ss_dssp HHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888877888865 6799999999999999999988766543
No 39
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=82.40 E-value=1.3 Score=45.33 Aligned_cols=54 Identities=39% Similarity=0.543 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 014877 134 PLRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 134 e~R~~FidFLerScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFl 189 (416)
.+.+-+..=++-||.=| +|||-+.--++||. +-|-.++++++..|||+.|--|+
T Consensus 171 ~~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~--kM~g~a~iirlI~RDE~~H~~~~ 228 (348)
T COG0208 171 PLEEFLLKLVVASVILEGILFYSGFAYPLYLARRG--KMPGTAEIIRLIIRDEALHLYFI 228 (348)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666 79999999999998 78999999999999999997654
No 40
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=82.31 E-value=5.4 Score=34.36 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=92.9
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccch
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~Pk 217 (416)
.++-|.+=...|+.....|--++....+. -|.+++.|.-.|.+|..||.-+-+-+.+.|..+++.-+.+.+. ++=.|.
T Consensus 4 ~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-~~~~~~ 82 (156)
T cd01055 4 LEKALNEQINLELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-EFESLL 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc-ccCCHH
Confidence 45666667788888888888777766554 7999999999999999999999999999999998877765442 333444
Q ss_pred hhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhh
Q 014877 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (416)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmra 276 (416)
-++=+..=.||----.|-.|.+.-+++=+. -..++|+.--.||-.|.+-+..++.-
T Consensus 83 ~~l~~al~~E~~~~~~~~~l~~~A~~~~D~---~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 83 EVFEAALEHEQKVTESINNLVDLALEEKDY---ATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333444444334555555655555443 34456664457777888777766653
No 41
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=81.45 E-value=0.94 Score=41.88 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=77.5
Q ss_pred hccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccc------------cccccccccCcccccc
Q 014877 148 TAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA------------LDLGFLTKARKYTFFK 215 (416)
Q Consensus 148 TaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~------------lDLgfLtk~rkYTfF~ 215 (416)
+.|+.-.-+|+--..-+ ++|.+.+...-|+++|.+|--..|+.|.+.|.- .=||.+|. .--
T Consensus 10 AGE~gA~~IY~gQ~~~~--~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~ta-----l~G 82 (165)
T cd01042 10 AGEVGAVRIYRGQLAVA--RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTA-----LLG 82 (165)
T ss_pred cchHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH-----hhC
Confidence 45666677888766666 679999999999999999999999999998652 33444443 123
Q ss_pred chhhhhhhhcccccchhhHHHHHHHhhh----CCCCcccchhhhhHhhhhhcccchhHHH
Q 014877 216 PKFIFYATYLSEKIGYWRYITIYRHLKA----NPEFQCYPIFKYFENWCQDENRHGDFFS 271 (416)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~----~Pe~r~~PIFk~FE~WCqDEnRHGDfFa 271 (416)
+++.+..|.=-|+ .|-+|++. =|+..-..+.+-++.-++||-+|.|-=.
T Consensus 83 ~~~a~~~~~avE~-------~V~~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~ 135 (165)
T cd01042 83 KKAAMACTAAVET-------VVEEHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAE 135 (165)
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655555 24455443 3533235677788999999999999633
No 42
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=81.10 E-value=0.88 Score=44.54 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=40.9
Q ss_pred HHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhh
Q 014877 137 QIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN 190 (416)
Q Consensus 137 ~~FidFLerScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlN 190 (416)
+.+...|+-|..-| +|||...--+.+|. +=|-++++..+.+|||..|..|.=
T Consensus 151 ~~~~~~~~~~~~lEgi~f~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~f~~ 206 (324)
T PRK09614 151 KILRKAAVASVFLEGFLFYSGFYYPLYLARQG--KMTGTAQIIRLIIRDESLHGYYIG 206 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHhhhHHHHHHHH
Confidence 35555555555555 68888877888875 789999999999999999998864
No 43
>PLN02492 ribonucleoside-diphosphate reductase
Probab=79.46 E-value=1.2 Score=43.85 Aligned_cols=49 Identities=31% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 014877 139 FVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 139 FidFLerScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFl 189 (416)
+..-|+-++.-| +|||...-=++||. +=|-++++..+.+|||+.|..|.
T Consensus 151 ~~~~lva~~~lEgi~F~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~ 203 (324)
T PLN02492 151 FAERLVAFACVEGIFFSGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFA 203 (324)
T ss_pred HHHHHHHHHhhhHHhhhhhHHHHHHHHHcC--CCcchHHHHHHHHhhHHHHHHHH
Confidence 444444443334 68888777888875 78999999999999999999776
No 44
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=78.69 E-value=1.3 Score=43.98 Aligned_cols=49 Identities=31% Similarity=0.260 Sum_probs=37.4
Q ss_pred HHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 014877 139 FVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 139 FidFLerScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFl 189 (416)
|..-|+.+..-| +|||...-=++||. +=|-++++..+.+|||+.|..|.
T Consensus 162 ~~~~lv~~~~lEgi~F~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~f~ 214 (330)
T PTZ00211 162 FAERLVAFAAVEGIFFSGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHTDFA 214 (330)
T ss_pred HHHHHHHHHHhhhHHhhhhHHHHHHHHhcC--CCcchHHHHHHHHhhHHHHHHHH
Confidence 444444444344 67887777888865 78999999999999999999876
No 45
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=78.18 E-value=1.1 Score=45.51 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=34.7
Q ss_pred hccccchhhHHHHhhhhcc-cCccHHHHhhccccchhhhhhhhhhh
Q 014877 148 TAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKG 192 (416)
Q Consensus 148 TaEFSGflLYKEl~Rrlk~-~NP~lae~F~lMaRDEARHAGFlNka 192 (416)
--|-.-++.|..++|..+. ..|.|+++-+.+|+||+||..|--+.
T Consensus 162 fQE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~i 207 (330)
T PF03405_consen 162 FQERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNI 207 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444557778888887744 59999999999999999998775443
No 46
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=76.75 E-value=1.3 Score=50.13 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=44.0
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhc
Q 014877 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (416)
Q Consensus 141 dFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~ 194 (416)
|=|....-=|=.|.-.|++++.+. +||.++++|..||+.|.+|+-.|.+-+.
T Consensus 863 eil~~Ai~mE~~g~~FY~~~A~~a--~~~~~K~lF~~LA~eE~~H~~~l~~~~~ 914 (1006)
T PRK12775 863 EAIRTAFEIELGGMAFYARAAKET--SDPVLKELFLKFAGMEQEHMATLARRYH 914 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556888999999999998 8999999999999999999999876654
No 47
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=75.49 E-value=2.8 Score=39.18 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=79.0
Q ss_pred HHHHHhhhhccccc---hhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccccccccccc--------
Q 014877 140 VEFLERSCTAEFSG---FLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKA-------- 208 (416)
Q Consensus 140 idFLerScTaEFSG---flLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~-------- 208 (416)
.++|+.--+.|..- .+.|.++.++- .-|.|+++|.-.|.+|+.||.=.=+.|++.+ +=+|-+.++
T Consensus 6 ~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~--~~~~~~~eNl~~aieGE 81 (166)
T COG1592 6 EENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL--LVLGDTRENLEEAIEGE 81 (166)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccccHHHHHHHHHccc
Confidence 34444443343332 56666766655 5899999999999999999998888888855 222222222
Q ss_pred -CccccccchhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhh
Q 014877 209 -RKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (416)
Q Consensus 209 -rkYTfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmra 276 (416)
-.+|-..|.|.=+|-... +-.+=.+|+.=+-||.+|.+-|..++..
T Consensus 82 ~~e~~emyp~~ae~A~~~g----------------------~~~~a~~f~~~~~~Ek~H~~~~~~~Le~ 128 (166)
T COG1592 82 TYEITEMYPVFAEVAEEEG----------------------FKEAARSFRAAAKAEKRHAEMFRGLLER 128 (166)
T ss_pred hHHHHHhChHHHHHHHHcC----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777888877776665 4456678888899999999999988865
No 48
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=75.33 E-value=2.6 Score=43.08 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 014877 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 135 ~R~~FidFLerScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFl 189 (416)
.++.+.+-|+-|+.-| +|||...--+++|. +=|-++++..+.+|||+.|..|.
T Consensus 233 ~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g--~m~g~~~~i~~I~RDE~lH~~~~ 289 (410)
T PRK12759 233 TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFG--KMKGMGKVVEWSIRDESMHVEGN 289 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444334 68888888899885 78999999999999999999885
No 49
>PF13668 Ferritin_2: Ferritin-like domain
Probab=74.16 E-value=7 Score=33.16 Aligned_cols=116 Identities=20% Similarity=0.347 Sum_probs=84.1
Q ss_pred hhhccccchhhHHHHhhhh------cccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccc-c----
Q 014877 146 SCTAEFSGFLLYKELGRRL------KKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTF-F---- 214 (416)
Q Consensus 146 ScTaEFSGflLYKEl~Rrl------k~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTf-F---- 214 (416)
-.+.|.-+-=.|+....+. ...++.+.++|+-|+.+|..|.-+|.++++ |-.. ....+|.| |
T Consensus 9 Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~-----~~~~~~~~~~~~~~ 81 (137)
T PF13668_consen 9 ALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRP-----VPPPAYDFPFDPFT 81 (137)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC-----CCCCccccccCCCC
Confidence 3455666666777777654 346899999999999999999999999996 2111 13344555 2
Q ss_pred cchhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHH
Q 014877 215 KPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (416)
Q Consensus 215 ~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalm 274 (416)
.|.=+.=+-+.-|+.|.-=|..+-.+++ +|+ +-+-+..=...|-||--.+..++
T Consensus 82 ~~~~~L~~A~~~E~~~~~~Y~g~~~~~~-~~~-----~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 82 DDASFLRLAYTLEDVGVSAYKGAAPQIE-DPE-----LKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444566779999999999999887 555 34667777888999988887765
No 50
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=72.50 E-value=2 Score=42.67 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=33.0
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhh-hhhccc
Q 014877 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN-KGLSDF 196 (416)
Q Consensus 151 FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlN-kal~Df 196 (416)
+|||-..-=+.||. +=|-++++..+.+|||+.|.-|.= +..+.+
T Consensus 166 ysgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 166 YSGFYLPMYWSSRG--KLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67776666676654 789999999999999999987443 343443
No 51
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=69.12 E-value=50 Score=30.29 Aligned_cols=115 Identities=18% Similarity=0.310 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHhhhhhh--ccchhHHhhcCCChhhhh--HHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHH
Q 014877 286 AKLWARFFCLSVYVTMYLND--CQRTAFYEGIGLDTKEFD--MHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINE 361 (416)
Q Consensus 286 ~kLW~RFFLLsVfaTMyl~D--~~R~~Fy~alGld~~~yD--~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~ 361 (416)
.-+|+=.+.++.++.+|+.- .+|..+|+.-||+.++++ .+.+.++.+--+++==..-.+.+++..+.+.++....+
T Consensus 32 ~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~ 111 (199)
T PF10112_consen 32 SFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIAR 111 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33444455555666666654 345679999999999976 56777777777777777788999999999999999999
Q ss_pred HHHHhhcCCChhhHhhhhh-----HHHHHHHHHHHHHHhcCCCcc
Q 014877 362 RLLAVGATDDIPLVKNLKR-----IPLIAALASELLATYLMPPVD 401 (416)
Q Consensus 362 kl~~~~~~~~~~~~~~l~k-----l~~~~~~~~~~lrLyl~p~~~ 401 (416)
++-+.-+.+ |.=+...++ +|-...+.-.+..|.-.|.+.
T Consensus 112 ~I~~~v~~~-P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~ 155 (199)
T PF10112_consen 112 RIFKYVEKD-PERLTQARKFLYYYLPTAVKLLEKYAELESQPVKS 155 (199)
T ss_pred HHHHHHHHC-HHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCC
Confidence 887766555 322333333 565666666666666665543
No 52
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=68.78 E-value=2.9 Score=41.90 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhh
Q 014877 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGF 188 (416)
Q Consensus 135 ~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGF 188 (416)
.++.....+..++-- +|||...--|+||. +=|-+++++.+.+|||+.|.-|
T Consensus 164 ~~~~va~~~lEGi~F-ysgFa~~~~L~~~g--kM~g~~~~i~~I~RDE~lH~~~ 214 (335)
T PRK13965 164 LKSKVAAAMMPGFLL-YGGFYLPFYLSARG--KLPNTSDIIRLILRDKVIHNYY 214 (335)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhcC--CCccHHHHHHHHHHhHHHHHHH
Confidence 344444444444333 47776666688876 7899999999999999999865
No 53
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=68.40 E-value=3.7 Score=41.23 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=34.8
Q ss_pred chhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHh----hCccchhhh
Q 014877 230 GYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK----AQPQFLNDW 284 (416)
Q Consensus 230 GYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmr----aqP~ll~g~ 284 (416)
+|-|+|.-+-.+... .=.+..+|-..|-..|||||+...--+- .+|..+...
T Consensus 76 ~Y~~~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~ 131 (297)
T cd01050 76 TYHSMLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERT 131 (297)
T ss_pred HHHHHHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 355555544333321 2245899999999999999999886553 466666654
No 54
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=65.52 E-value=2.6 Score=36.75 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=39.3
Q ss_pred cccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc
Q 014877 150 EFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL 200 (416)
Q Consensus 150 EFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~l 200 (416)
|--|.=.|..+..+.+ ..++|..++++|.+|...|.+-+...|+..
T Consensus 12 Ek~a~~~Y~~~~~k~~-----~~~~F~~la~~E~~H~~~l~~L~~~~~~~~ 57 (135)
T cd01048 12 EKLARDVYLALYEKFG-----GLRPFSNIAESEQRHMDALKTLLERYGLPD 57 (135)
T ss_pred HHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4446667888888873 688999999999999999999999999875
No 55
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=62.99 E-value=21 Score=31.23 Aligned_cols=136 Identities=18% Similarity=0.087 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccc
Q 014877 136 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFF 214 (416)
Q Consensus 136 R~~FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF 214 (416)
+...++.|-.-...|++-...|.=.+.=.+.. -+.++..|..=|-||-.||+-|-.-+.+.|-..+++-+..-+ .. .
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~-~~-~ 81 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQKNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLR-IG-E 81 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCC-CC-C
Confidence 45688999999999999999888776655332 467778888889999999999999999999999987665433 22 3
Q ss_pred cchhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhh
Q 014877 215 KPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (416)
Q Consensus 215 ~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmra 276 (416)
.+.=++=..+=.|+-.-.+|=-+.+--++.-|..-..+ |+...+||-+|-+++.+.+.-
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~l---l~~~i~eee~h~~~l~~~l~~ 140 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDL---LEEILEDEEEHIDWLETQLEL 140 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666555555444444445556555544 566689999999999988874
No 56
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=62.37 E-value=5.4 Score=38.31 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=35.4
Q ss_pred hhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccc
Q 014877 146 SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (416)
Q Consensus 146 ScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df 196 (416)
-|.+|=+-=-+.+++.+-- .-.|.+.+++..=.+|||||.+|--..|.+.
T Consensus 178 ~lv~Ee~i~~~~~~~~~D~-~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~ 227 (304)
T PF11583_consen 178 ALVAEEIIDAYQREIARDE-TIQPLVRQVMRIHVRDEARHIAFAREELRRV 227 (304)
T ss_dssp HHHHHHSBHHHHHHHHT-S-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556655555556665522 1379999999999999999999987777653
No 57
>PRK13456 DNA protection protein DPS; Provisional
Probab=59.40 E-value=26 Score=33.57 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhccccccccccccc----c
Q 014877 133 GPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLT----K 207 (416)
Q Consensus 133 ~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLt----k 207 (416)
+..++..|+-|.+.-..|+.-++-|+-.+--++.- .+.|+|.+.--+=||-+||-.|=.-+.++|-..+...-. .
T Consensus 15 g~d~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls 94 (186)
T PRK13456 15 GVDVDKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDIS 94 (186)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhh
Confidence 44688899999999999999999999988888755 689999888866699999999999999999888866542 2
Q ss_pred cCccccccchh-----hhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHhhCcc
Q 014877 208 ARKYTFFKPKF-----IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQ 279 (416)
Q Consensus 208 ~rkYTfF~Pkf-----IfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmraqP~ 279 (416)
++.|...+... |+=..--.|++-=.+|=-|.+..+-. +-.=+ +-.+.=-+||-.|-+-|..||+..|.
T Consensus 95 ~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~k-Dp~T~---~l~~~IL~dE~eH~~dl~~lL~~~~~ 167 (186)
T PRK13456 95 ACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGK-DPRTY---DLALAILQEEIEHEAWFSELLGGGPS 167 (186)
T ss_pred cCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHH---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58887776543 45566668888888888888887733 43333 33566789999999999999999884
No 58
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=57.05 E-value=11 Score=38.43 Aligned_cols=53 Identities=25% Similarity=0.195 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 014877 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 135 ~R~~FidFLerScTaE----FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFl 189 (416)
.++.++.-|+.|..=| +|||...=-|+||. +=|-++++..+.+|||+-|..|.
T Consensus 190 ~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g--~m~g~~~~i~~I~RDE~lH~~~~ 246 (376)
T PRK09101 190 LKKKLYLCLMSVNALEAIRFYVSFACSFAFAERE--LMEGNAKIIRLIARDEALHLTGT 246 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHH
Confidence 4565665555555444 67777666788865 78999999999999999998776
No 59
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=54.01 E-value=38 Score=32.37 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=71.9
Q ss_pred cccChHHHhhccccccCccccHHHHH---HHHHHHhhccCCCCcccCchh-HHHhhcCChHHHHHHHHHHHhhhhccccc
Q 014877 78 YTTDFDEMETLFNTEINKKLNQAEFE---ALLQEFKTDYNQTHFVRNKEF-KEAADKMQGPLRQIFVEFLERSCTAEFSG 153 (416)
Q Consensus 78 YTTDFd~m~~lf~~eid~s~~r~E~~---Aml~Efr~DyNr~HFvR~~eF-~~~~d~l~~e~R~~FidFLerScTaEFSG 153 (416)
|..+-+=+++| ....+||+. ..++-|++-.-.--=.+.+.+ .+...++....-..++|=|.=+-.=|--|
T Consensus 44 Y~~~~~Lv~~m------~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~~p~~llD~Llv~alIEARS 117 (180)
T cd07910 44 YPEKPELVEAM------SDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKGEPERLLDRLLVAALIEARS 117 (180)
T ss_pred cCCcHhHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccCChHHHHHHHHHHHHHHHHh
Confidence 44455555555 335788887 777777764332111233344 33334444445556788776555556667
Q ss_pred hhhHHHHhhhhcccCccHHHHhhccccchhhhhh-hhhhhhcccc
Q 014877 154 FLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG-FLNKGLSDFN 197 (416)
Q Consensus 154 flLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAG-FlNkal~Df~ 197 (416)
|==|+=|+..+ ..++|++.+.-+-+.||||-+ |+.-|-.-++
T Consensus 118 cERF~lLa~~l--~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 118 CERFALLAPAL--PDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHHHHhccC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 77788888887 568999999999999999965 6665554443
No 60
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=52.89 E-value=8.3 Score=38.71 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=97.4
Q ss_pred hcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhc--cccchhhhhhhhhhhhccccccc--cc-c
Q 014877 129 DKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSL--MSRDEARHAGFLNKGLSDFNYAL--DL-G 203 (416)
Q Consensus 129 d~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~l--MaRDEARHAGFlNkal~Df~l~l--DL-g 203 (416)
|.||++-|+..+.+|.+---+|+-|-.-+.|--.|. |.|.|=..+ ++=||..||=.+-..+.++|.+- |+ .
T Consensus 15 d~mp~~yr~~L~r~l~~~AdsEli~a~r~~eW~~~A----P~LeediAl~niaqDelGHar~ly~~a~~LG~~r~ed~~a 90 (289)
T TIGR02156 15 DWMPAAYRKTLIRQISQHAHSEIVGMLPEGNWITRA----PTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSREELLDA 90 (289)
T ss_pred ccCCHHHHHHHHHHHHHHhhHHHHhccccccHHHhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 679999999999999999999999999999977777 888885554 57799999999999999998842 23 3
Q ss_pred cccccCccccc--cc--hhhh--hhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccc---h-hHHHHH
Q 014877 204 FLTKARKYTFF--KP--KFIF--YATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRH---G-DFFSAL 273 (416)
Q Consensus 204 fLtk~rkYTfF--~P--kfIf--YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRH---G-DfFaal 273 (416)
++...++|.-. .| .|-. =-.||-+ ||. |..+ +.--.-.+-|+=.=...=|..|--| | +..-.|
T Consensus 91 ~~r~~~~f~nl~e~P~~dwA~tivr~~l~D--~~~--~~~~---~~L~~SSy~plA~ia~Ki~KEe~yH~rh~~~wl~rL 163 (289)
T TIGR02156 91 LLTGKAKYSSIFNYPTLTWADIGVIGWLVD--GAA--IMNQ---TPLCRCSYGPYSRAMVRICKEESFHQRQGYEIMLTL 163 (289)
T ss_pred HhcChHhhccchhCCCCCHHHHHHHHHHHH--HHH--HHHH---HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777531 00 0000 0011111 111 1112 3333455556666677777777644 3 233334
Q ss_pred Hhh---CccchhhhhhHHHHH
Q 014877 274 MKA---QPQFLNDWKAKLWAR 291 (416)
Q Consensus 274 mra---qP~ll~g~~~kLW~R 291 (416)
+.. +-+.+..-.+++|-.
T Consensus 164 ~~GT~esr~r~Q~Ald~~Wp~ 184 (289)
T TIGR02156 164 ARGTQEQRQMAQDALNRWWWP 184 (289)
T ss_pred HcCCHHHHHHHHHHHHHHHHH
Confidence 432 334455556777754
No 61
>PTZ00183 centrin; Provisional
Probab=51.85 E-value=37 Score=28.16 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=51.0
Q ss_pred HHHHHHHHHHh-hccCCCCcccCchhHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc------cCccHH
Q 014877 100 AEFEALLQEFK-TDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK------TNPVVA 172 (416)
Q Consensus 100 ~E~~Aml~Efr-~DyNr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~------~NP~la 172 (416)
++.+++...|+ -|.|+...+-.++|...+..+....-..-++=+-+.+-.+-.|.|-|.|...=+.. ....+.
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 34444444443 37778888888888766664321112223444445555667777777766442211 224688
Q ss_pred HHhhccccchhhhhhhhh
Q 014877 173 EIFSLMSRDEARHAGFLN 190 (416)
Q Consensus 173 e~F~lMaRDEARHAGFlN 190 (416)
++|..+..|. .|.|+
T Consensus 94 ~~F~~~D~~~---~G~i~ 108 (158)
T PTZ00183 94 KAFRLFDDDK---TGKIS 108 (158)
T ss_pred HHHHHhCCCC---CCcCc
Confidence 8999887764 55554
No 62
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=50.88 E-value=1.1e+02 Score=30.66 Aligned_cols=244 Identities=11% Similarity=0.116 Sum_probs=115.4
Q ss_pred cCccccHHHHHHHHHHHhhccCCCCcc-cCchh---HHHhhcCChHHHHHHHHHH------HhhhhccccchhhHHHHhh
Q 014877 93 INKKLNQAEFEALLQEFKTDYNQTHFV-RNKEF---KEAADKMQGPLRQIFVEFL------ERSCTAEFSGFLLYKELGR 162 (416)
Q Consensus 93 id~s~~r~E~~Aml~Efr~DyNr~HFv-R~~eF---~~~~d~l~~e~R~~FidFL------erScTaEFSGflLYKEl~R 162 (416)
||.+.++.+|.-.+=+- .+..|.. ..=++ .++|..|+++.|..+.-.| .+.++ +.-...++.+
T Consensus 12 ~nwn~~~~~~~~~~~~~---~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~i~~~l~~lt~lDs~q~-~~~~~~~~~~--- 84 (322)
T PRK13967 12 INWNRLLDAKDLQVWER---LTGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDTAQA-TVGAVAMIDD--- 84 (322)
T ss_pred CCCCCccchhhHHHHHH---HHhCCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHh---
Confidence 47777767766544331 1123332 22244 3579999999998766555 32333 2111123333
Q ss_pred hhcccCccHHHHhhccccchhhhhhhhhhhhccccc----------ccccccccccCcc--ccccc-h--hhhhhhhccc
Q 014877 163 RLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNY----------ALDLGFLTKARKY--TFFKP-K--FIFYATYLSE 227 (416)
Q Consensus 163 rlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l----------~lDLgfLtk~rkY--TfF~P-k--fIfYAtYLSE 227 (416)
+ .+|...-++..++=-|+.|+---.-.+.-++. ..+...|.|+-++ .+++- . --.=+.++-|
T Consensus 85 -~--~~~e~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~~~~~~v~~~~lE 161 (322)
T PRK13967 85 -A--VTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQIIVDYYRGDDALKRKASSVMLE 161 (322)
T ss_pred -c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhcCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3 57889999999999999999544333333322 1123333322211 11110 0 0001233344
Q ss_pred ccc-hhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHH-hhCccchhhhhhHH--H-HHHHHHHHHHhhh
Q 014877 228 KIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM-KAQPQFLNDWKAKL--W-ARFFCLSVYVTMY 302 (416)
Q Consensus 228 KIG-YwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalm-raqP~ll~g~~~kL--W-~RFFLLsVfaTMy 302 (416)
.|= |-=+-.++ .|.++ ...-=+=+=.+-=+.||..||.++..++ +.-+++...-+..+ | ...+.-+| .-
T Consensus 162 gi~FysgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~~~~~l~~~~~---~~ 235 (322)
T PRK13967 162 SFLFYSGFYLPM-YWSSR--GKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLY---AN 235 (322)
T ss_pred HHHHHHHHHHHH-HHhhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH---HH
Confidence 432 33333333 44321 1111121222233679999999999644 55444432211111 1 11221122 00
Q ss_pred hhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcc-----cccccccCChhhHHHHH
Q 014877 303 LNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARI-----FPAVLDVENPEFKRRLD 354 (416)
Q Consensus 303 l~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rv-----FP~vLdvd~P~F~~~Ld 354 (416)
--+..+.- |+-+||+ .+....|=-..|....++ ||..=+-.||-....++
T Consensus 236 E~~~~~~~-~~~~Gl~-~~v~~yi~Y~an~rL~~LGl~~~f~~~~~~~nP~~~~~~~ 290 (322)
T PRK13967 236 EIDYAHDL-YDELGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALD 290 (322)
T ss_pred HHHHHHHH-hCcCCch-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhc
Confidence 11111111 3569996 447777777777777664 44322234676433333
No 63
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=48.74 E-value=7.4 Score=32.90 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=19.7
Q ss_pred cchhhHHHHHHHhhhCCCCcccc
Q 014877 229 IGYWRYITIYRHLKANPEFQCYP 251 (416)
Q Consensus 229 IGYwRYItIyRHLe~~Pe~r~~P 251 (416)
|-|.||++++-+|.+|||++=.+
T Consensus 59 vl~~R~~~L~~ki~~Hpdy~~~~ 81 (115)
T PF08969_consen 59 VLYMRYLTLVEKIPKHPDYKKDK 81 (115)
T ss_dssp HHHHHHHHHHCCHCCSCCCCCTH
T ss_pred HHHHHHHHHHHHhhcCccccccc
Confidence 56899999999999999987544
No 64
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=47.89 E-value=9.3 Score=39.15 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=22.3
Q ss_pred cccchhhhhHhhhhhcccchhHHHHHH
Q 014877 248 QCYPIFKYFENWCQDENRHGDFFSALM 274 (416)
Q Consensus 248 r~~PIFk~FE~WCqDEnRHGDfFaalm 274 (416)
...|..+|.-.|--.|||||+...--|
T Consensus 96 ~~~~W~~wv~~WTAEEnRHg~~L~~YL 122 (330)
T PF03405_consen 96 SDSPWGRWVGRWTAEENRHGDALRDYL 122 (330)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHcccccccccccHHHHHHHH
Confidence 477999999999999999999876544
No 65
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=43.40 E-value=22 Score=29.21 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc
Q 014877 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL 200 (416)
Q Consensus 141 dFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~l 200 (416)
+=|-.=++.+..|.--|+....++ +||.|+.+|.-|+-+-.+|+.=|..-+.++|-..
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~--~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKA--EDPELKSLFQEFAQERQQHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 334444567788899999999999 6899999999999999999999999999998654
No 66
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=42.18 E-value=21 Score=34.89 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=64.5
Q ss_pred HhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhc--cccchhhhhhhhhhhhccc-ccc---c
Q 014877 127 AADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSL--MSRDEARHAGFLNKGLSDF-NYA---L 200 (416)
Q Consensus 127 ~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~l--MaRDEARHAGFlNkal~Df-~l~---l 200 (416)
+.+.||++.|+..+++|.+---+|+.|--=|.|.--+. |.|.|-..+ |+=||-+||-.+..-+.++ |-+ =
T Consensus 6 ~~~~~~~~~~~~L~~~l~~laD~elil~~r~~ew~~~A----P~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d 81 (263)
T PF05138_consen 6 DPDEMPEEYREALIRYLLRLADDELILGQRLSEWCGHA----PSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDED 81 (263)
T ss_dssp TTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHhChHHHhhhHHhHHHhhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh
Confidence 45789999999999999999999999988888886666 999887665 5679999999999999999 433 2
Q ss_pred ccccccccCccc
Q 014877 201 DLGFLTKARKYT 212 (416)
Q Consensus 201 DLgfLtk~rkYT 212 (416)
+|.++...++|.
T Consensus 82 ~la~~R~~~~~r 93 (263)
T PF05138_consen 82 DLAFLRDAREFR 93 (263)
T ss_dssp HHHHHHHTTCS-
T ss_pred HHHhhcccchhh
Confidence 456666666653
No 67
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=39.63 E-value=22 Score=32.31 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=46.9
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccc
Q 014877 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (416)
Q Consensus 140 idFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df 196 (416)
++=|..-..||-.+...|+++.+-+ +.|.+.++...+..||-.|.-=+-++|...
T Consensus 101 ~~~L~~ni~aE~~Ai~~Y~~l~~~~--~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 101 VADLRSNIAAESRARLTYERLYEMT--DDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445567789999999999999988 589999999999999999998877777643
No 68
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.89 E-value=7.2 Score=31.36 Aligned_cols=24 Identities=21% Similarity=0.743 Sum_probs=20.0
Q ss_pred HHHhhhhhhccch-hHHhhcCCChh
Q 014877 297 VYVTMYLNDCQRT-AFYEGIGLDTK 320 (416)
Q Consensus 297 VfaTMyl~D~~R~-~Fy~alGld~~ 320 (416)
+|++.+++|.+|+ +||+.||+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~ 26 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFN 26 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEc
Confidence 4778899999975 79999999754
No 69
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=36.82 E-value=1.3e+02 Score=30.17 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=121.3
Q ss_pred cCccccHHHHHH-HHHHHhhccCCCCcccCchh---HHHhhcCChHHHHHHHHHHH-----hhhhccccchhhHHHHhhh
Q 014877 93 INKKLNQAEFEA-LLQEFKTDYNQTHFVRNKEF---KEAADKMQGPLRQIFVEFLE-----RSCTAEFSGFLLYKELGRR 163 (416)
Q Consensus 93 id~s~~r~E~~A-ml~Efr~DyNr~HFvR~~eF---~~~~d~l~~e~R~~FidFLe-----rScTaEFSGflLYKEl~Rr 163 (416)
++.++++.+|.. +-+.+. +.+-+...=++ .++|.+|+++.|..+..-|- .|...+..+.. +...
T Consensus 14 ~n~n~~~~~~~~~~~~~~~---~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~----~~~~ 86 (324)
T PRK13966 14 INWNRLQDEKDAEVWDRLT---GNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVS----LIPD 86 (324)
T ss_pred ccCCCcccHHHHHHHHHHH---hCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHHH----HHHh
Confidence 478888777743 333333 22233322244 35788999999987654321 12223332223 3334
Q ss_pred hcccCccHHHHhhccccchhhhhh---hhhhhhcc-------cccccccccccccCccc--cccc-h--hhhhhhhcccc
Q 014877 164 LKKTNPVVAEIFSLMSRDEARHAG---FLNKGLSD-------FNYALDLGFLTKARKYT--FFKP-K--FIFYATYLSEK 228 (416)
Q Consensus 164 lk~~NP~lae~F~lMaRDEARHAG---FlNkal~D-------f~l~lDLgfLtk~rkYT--fF~P-k--fIfYAtYLSEK 228 (416)
+ ..|..+.++..++--|+.|+- .|.+.+.+ |+.-.+...|.++-.+- ++.- + --..|-++-|.
T Consensus 87 ~--~~pe~~~~~~~q~~~E~IHsesYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~~~~~~va~~~lEg 164 (324)
T PRK13966 87 A--LTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQYYRGDEPLKRKVASTLLES 164 (324)
T ss_pred c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhcCHHHHHHHHHHHHHhcCChHHHHHHHHHHHhH
Confidence 4 469999999999999999995 45555532 22111233344333220 1100 0 00234445666
Q ss_pred c-chhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHh----hCccchhhhhhHHHHHHHHHHHHH--hh
Q 014877 229 I-GYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK----AQPQFLNDWKAKLWARFFCLSVYV--TM 301 (416)
Q Consensus 229 I-GYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmr----aqP~ll~g~~~kLW~RFFLLsVfa--TM 301 (416)
| =|-=+-.+| .|.++ ...-=+=+=++-=+.||.-||+|+..+.+ -.|++... .-+=|++=.+.-.+. .-
T Consensus 165 i~FysgF~~~~-~l~~~--~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~-~~~~~i~~l~~~av~~E~e 240 (324)
T PRK13966 165 FLFYSGFYLPM-YWSSR--AKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRA-ELKDYTYELLFELYDNEVE 240 (324)
T ss_pred HHHHHHHHHHH-HHhhc--CCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 6 333333344 34332 12222333344446799999999988886 23443321 011133222221111 12
Q ss_pred hhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcc-----cccccccCCh
Q 014877 302 YLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARI-----FPAVLDVENP 347 (416)
Q Consensus 302 yl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rv-----FP~vLdvd~P 347 (416)
|+++. |+-+||+. +....|=-..|....++ ||..-+..||
T Consensus 241 ~~~~~-----~~~~Gl~~-~v~~Yi~y~An~~L~~lG~e~~f~~~~~~~nP 285 (324)
T PRK13966 241 YTQDL-----YDEVGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNP 285 (324)
T ss_pred HHHHH-----HhcCCChH-HHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCC
Confidence 23322 34689986 68888888888877654 4432233588
No 70
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=36.76 E-value=20 Score=27.31 Aligned_cols=20 Identities=40% Similarity=0.815 Sum_probs=16.1
Q ss_pred hhhhhccCCCCccccChHHHh
Q 014877 66 TAIKETLLTPRFYTTDFDEME 86 (416)
Q Consensus 66 ~a~~etlLTPRFYTTDFd~m~ 86 (416)
=.++-..+||| |||+.+++-
T Consensus 31 W~mr~~~~Sp~-yTT~w~el~ 50 (52)
T PF13438_consen 31 WKMRREMLSPR-YTTRWDELP 50 (52)
T ss_pred hHHHHHhcCCC-CcCCHHHcc
Confidence 45677789998 799999874
No 71
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=36.37 E-value=21 Score=35.73 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=29.4
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 014877 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 151 FSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFl 189 (416)
+|||-..-=+.||. +=|-+++++.+.+|||+-|.-|.
T Consensus 168 ysgF~~~~~l~~~~--km~g~~~~i~~I~RDE~lH~~f~ 204 (324)
T PRK13966 168 YSGFYLPMYWSSRA--KLTNTADMIRLIIRDEAVHGYYI 204 (324)
T ss_pred HHHHHHHHHHhhcC--CCCcHHHHHHHHHHhHHHHHHHH
Confidence 56766655666654 66899999999999999998773
No 72
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=35.67 E-value=33 Score=29.61 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=46.3
Q ss_pred ccchhhhhhhccCCCCc----cccChH-HHhhccccccCccccHHHHHHHHHHH-hhccCCCCcccCchh
Q 014877 61 KKSNKTAIKETLLTPRF----YTTDFD-EMETLFNTEINKKLNQAEFEALLQEF-KTDYNQTHFVRNKEF 124 (416)
Q Consensus 61 ~~~~k~a~~etlLTPRF----YTTDFd-~m~~lf~~eid~s~~r~E~~Aml~Ef-r~DyNr~HFvR~~eF 124 (416)
.++.++...-+|.|+|| |.+||- +++.+++...+.+..+.|++.++.|= ..|+ |--=|.|=+|
T Consensus 24 ~EAl~qwi~k~L~TeR~~~~iYs~~yG~ele~lig~~~~~~~~~sEi~r~I~EaL~~d~-rI~~V~~f~f 92 (112)
T PF10934_consen 24 LEALKQWIYKALNTERYRYLIYSWDYGSELEDLIGKNYPREYVESEIEREIEEALLQDP-RITSVENFSF 92 (112)
T ss_pred HHHHHHHHHHHhCCcccceeccccccchhHHHHhcCCCChHHHHHHHHHHHHHHHhcCC-CcceEEEEEE
Confidence 36778889999999996 888884 67778777778888899999999883 3443 4444444444
No 73
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=34.21 E-value=53 Score=29.83 Aligned_cols=115 Identities=11% Similarity=0.160 Sum_probs=77.4
Q ss_pred hhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhh-----
Q 014877 145 RSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI----- 219 (416)
Q Consensus 145 rScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~PkfI----- 219 (416)
.+|.+|.|-.+-|-==+-.++ ++|.++++|.-.|.+|-+|++.|-.....+|- +.....+.+.+|
T Consensus 30 gG~~gEl~ai~qYl~q~~~~~-~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~---------~~~g~pw~~~yv~~~~d 99 (156)
T cd01051 30 GGAFGELSAAMQYLFQSFNFR-EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK---------DSQGVPWTAAYIQSSGN 99 (156)
T ss_pred CCccHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCCCcCCCcccCCCCC
Confidence 455666666666654444443 78999999999999999999999988887664 111122344444
Q ss_pred ----hhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHHHHHHh
Q 014877 220 ----FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (416)
Q Consensus 220 ----fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfFaalmr 275 (416)
+.+..=+|+-+-..|--+++-.+ +--..-++++ =-+||-.|=+-|..++.
T Consensus 100 ~~~~L~~ni~aE~~Ai~~Y~~l~~~~~---Dp~v~~~l~~---I~~rE~~H~~~f~~~l~ 153 (156)
T cd01051 100 LVADLRSNIAAESRARLTYERLYEMTD---DPGVKDTLSF---LLVREIVHQNAFGKALE 153 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44555567777777766666554 3334444444 45899999999988776
No 74
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=34.18 E-value=26 Score=32.89 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.5
Q ss_pred CccHHHHhhccccchhhhhhhhhhhhccc
Q 014877 168 NPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (416)
Q Consensus 168 NP~lae~F~lMaRDEARHAGFlNkal~Df 196 (416)
+..++.-|..++|||.+|++-+.++|.-.
T Consensus 101 ~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~ 129 (166)
T COG1592 101 FKEAARSFRAAAKAEKRHAEMFRGLLERL 129 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888889999999999999999988654
No 75
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=33.67 E-value=44 Score=31.58 Aligned_cols=102 Identities=27% Similarity=0.357 Sum_probs=59.9
Q ss_pred cCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHH----HHhhccccchhhhhhhhhhhhccccccccccc
Q 014877 130 KMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVA----EIFSLMSRDEARHAGFLNKGLSDFNYALDLGF 204 (416)
Q Consensus 130 ~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~-NP~la----e~F~lMaRDEARHAGFlNkal~Df~l~lDLgf 204 (416)
+-+.+-++..|+.+...+-.+-++.-++..|.+|+... |+.++ =+++-|=||- |-.|....++--+-..+++.
T Consensus 14 ~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G--~~~~~~~~~~~~~~~~~~~~ 91 (280)
T PF07651_consen 14 HDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDG--HPSFLQELLRYNRRLFDLSN 91 (280)
T ss_dssp SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS---CHHHHHHHHTT-----TT-
T ss_pred CCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcC--chHHHHHHHHcccchhhhcc
Confidence 33444556677888777544588889999999999887 77665 2455667774 45677766665555667777
Q ss_pred ccc---cCccccccchhhh-hhhhcccccchhh
Q 014877 205 LTK---ARKYTFFKPKFIF-YATYLSEKIGYWR 233 (416)
Q Consensus 205 Ltk---~rkYTfF~PkfIf-YAtYLSEKIGYwR 233 (416)
+.+ ++.=++=--.||= |+.||-||....|
T Consensus 92 ~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~ 124 (280)
T PF07651_consen 92 IWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHR 124 (280)
T ss_dssp --T---SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccchhHHHHHHHHHHHHHHHHHH
Confidence 766 1111222246777 9999999976543
No 76
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=32.52 E-value=38 Score=34.62 Aligned_cols=155 Identities=20% Similarity=0.261 Sum_probs=99.4
Q ss_pred HhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhh--ccccchhhhhhhhhhhhccccccc--cc
Q 014877 127 AADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFS--LMSRDEARHAGFLNKGLSDFNYAL--DL 202 (416)
Q Consensus 127 ~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~--lMaRDEARHAGFlNkal~Df~l~l--DL 202 (416)
.-|.||++-|+..+.+|.+---+|+-|-.-..|--.|- |.|.|=.. -++=||..||=.+-..+.++|.+- |+
T Consensus 31 ~~d~mp~~yr~~L~~~l~~laDseLi~a~r~~eWi~~A----P~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~e~~ 106 (314)
T PRK13778 31 PKDWMPDAYRKTLIRQISQHAHSEIVGMLPEGNWITRA----PSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELI 106 (314)
T ss_pred CccccCHHHHHHHHHHHHHHhhHHHHhcchhccHHHhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 33679999999999999999999999998888876666 88887554 457899999999999999998853 23
Q ss_pred -ccccccCccccc--cch--h--hhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhH----HH
Q 014877 203 -GFLTKARKYTFF--KPK--F--IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDF----FS 271 (416)
Q Consensus 203 -gfLtk~rkYTfF--~Pk--f--IfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDf----Fa 271 (416)
.++...++|.-. .|. | +.--.||-+ ||. |..+.-|+ .-.+-|+=.=...=|..|--|-.. .-
T Consensus 107 ~a~~r~~~~f~n~fe~P~~dwAdtvvr~~L~D--~a~--~~~~~~L~---~sSy~plA~~a~Ki~KEe~yH~rhg~~wl~ 179 (314)
T PRK13778 107 DDLLSGKAKYSSIFNYPTLTWADVGVIGWLVD--GAA--IMNQVPLC---RCSYGPYARAMVRICKEESFHQRQGEEILL 179 (314)
T ss_pred HHHhcchHHhcccccCCCCCHHHHHHHHHHHH--HHH--HHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777776532 111 1 111222322 221 11122333 455666666677778888655433 33
Q ss_pred HHHhhCc---cchhhhhhHHHHHH
Q 014877 272 ALMKAQP---QFLNDWKAKLWARF 292 (416)
Q Consensus 272 almraqP---~ll~g~~~kLW~RF 292 (416)
.|+..-| +.+.+-.+++|-..
T Consensus 180 rL~~GT~esr~r~Q~Ald~~Wp~~ 203 (314)
T PRK13778 180 ALARGTPAQKQMAQDALNRWWWPA 203 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3333222 34555567777643
No 77
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=32.47 E-value=74 Score=29.62 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhh
Q 014877 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGL 193 (416)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal 193 (416)
.-.++=|..+.-+|.-..-.|.++...+ .|+.++.+|...+.||-.|+-++..-.
T Consensus 112 ~~~~~~I~~a~~~E~~t~~~Y~~~~~~~--~~~~~~~~~~~~a~~E~~H~~~l~~~~ 166 (176)
T COG1633 112 VSYLEAIEAAMEAEKDTIEFYEELLDEL--VNEEAKKLFKTIADDEKGHASGLLSLY 166 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888999999999999999 999999999999999999998876543
No 78
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=32.15 E-value=57 Score=35.14 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhccCCCCcccCchhHHHhhcCChH-HHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhcc
Q 014877 100 AEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGP-LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLM 178 (416)
Q Consensus 100 ~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e-~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lM 178 (416)
-+|.-+.+||-+|.| -++--.+..+....++.+ .-....-=|.+-|+++-+|-|=|.|-+|-+.++--.|.++|+-+
T Consensus 14 ~r~~~lf~~lD~~~~--g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~i 91 (463)
T KOG0036|consen 14 IRIRCLFKELDSKND--GQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHHhccCCC--CceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhh
Confidence 467778888865544 455555555444444333 44445566778999999999999999999988888999999999
Q ss_pred ccchhhhhhh-----hhhhhcccccccccccccccCccccccchhhhhhhhcccccchhhHHHH-----HHHhhhCCCCc
Q 014877 179 SRDEARHAGF-----LNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITI-----YRHLKANPEFQ 248 (416)
Q Consensus 179 aRDEARHAGF-----lNkal~Df~l~lDLgfLtk~rkYTfF~PkfIfYAtYLSEKIGYwRYItI-----yRHLe~~Pe~r 248 (416)
-++ |-|= |+.+|+|.|+.+|..-+.| ||. + -+|=|+| +| --|+--||+--
T Consensus 92 D~~---hdG~i~~~Ei~~~l~~~gi~l~de~~~k-----~~e--~-------~d~~g~~---~I~~~e~rd~~ll~p~s~ 151 (463)
T KOG0036|consen 92 DLE---HDGKIDPNEIWRYLKDLGIQLSDEKAAK-----FFE--H-------MDKDGKA---TIDLEEWRDHLLLYPESD 151 (463)
T ss_pred ccc---cCCccCHHHHHHHHHHhCCccCHHHHHH-----HHH--H-------hccCCCe---eeccHHHHhhhhcCChhH
Confidence 886 5554 4899999999998877666 332 1 1233332 22 14777888888
Q ss_pred ccchhhhhHhhh
Q 014877 249 CYPIFKYFENWC 260 (416)
Q Consensus 249 ~~PIFk~FE~WC 260 (416)
++-|..+.+.-|
T Consensus 152 i~di~~~W~h~~ 163 (463)
T KOG0036|consen 152 LEDIYDFWRHVL 163 (463)
T ss_pred HHHHHHhhhhhe
Confidence 888888888888
No 79
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=31.61 E-value=44 Score=30.02 Aligned_cols=47 Identities=30% Similarity=0.455 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhh
Q 014877 132 QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN 190 (416)
Q Consensus 132 ~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlN 190 (416)
++++|+.|-.-|.+|+..... .+.+|...++-.-|+.||||=--+|.
T Consensus 32 ~e~Lremfa~LLass~d~~~~------------~~~hp~fv~Ii~qLsp~EA~iL~~l~ 78 (186)
T PF14337_consen 32 DEELREMFANLLASSMDKRKN------------DDVHPSFVEIIKQLSPDEARILKYLY 78 (186)
T ss_pred cHHHHHHHHHHHHHHhCcCcc------------ccccHHHHHHHHhCCHHHHHHHHHHH
Confidence 788999999999999987543 33578888999999999988666665
No 80
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=30.87 E-value=37 Score=29.71 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=40.2
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhh
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARH 185 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARH 185 (416)
-+|=|+-.|..|=...-.|.++..+. +||++..+|.-++..|.+|
T Consensus 83 ~~~al~~g~~~E~~~i~~ye~~~~~~--~d~d~k~v~~~L~~~e~~H 127 (135)
T cd01048 83 LQDALEVGVLIEELDIADYDRLLERT--QNPDIRDVFENLQAASRNH 127 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence 46667777888999999999999999 7899999999999999888
No 81
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=29.53 E-value=59 Score=37.43 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=48.0
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCcc-HHHHhhccccchhhhhhhhhhhhccc
Q 014877 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPV-VAEIFSLMSRDEARHAGFLNKGLSDF 196 (416)
Q Consensus 140 idFLerScTaEFSGflLYKEl~Rrlk~~NP~-lae~F~lMaRDEARHAGFlNkal~Df 196 (416)
.+-|+=.+-.|-.+..+|+|++.+. .+|+ .+++|.-||..|..|.=.|-+-|...
T Consensus 943 ~~al~lAm~~Ekdai~fY~~la~~~--~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 943 GNLFRIAIEFERRAVKFFKERVAET--PDGSVERQLYKELAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999998 6775 69999999999999998887776554
No 82
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=28.23 E-value=2.9e+02 Score=27.93 Aligned_cols=48 Identities=29% Similarity=0.523 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhhh---hccchhHHhhcCCChhhhhHH--------HHHHhhhhhhcccc
Q 014877 292 FFCLSVYVTMYLN---DCQRTAFYEGIGLDTKEFDMH--------VIIETNRTTARIFP 339 (416)
Q Consensus 292 FFLLsVfaTMyl~---D~~R~~Fy~alGld~~~yD~~--------Vi~~TN~ta~rvFP 339 (416)
.+++.||..+++. --.|+.|++.+|+++++|+.+ .+.++|+...++-+
T Consensus 62 ~~~~~~y~~F~~~WGlNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~ 120 (318)
T PF12725_consen 62 FFLSVLYFLFYLLWGLNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITE 120 (318)
T ss_pred HHHHHHHHHHHHHhhhhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566677777764 456999999999999888764 57889999988876
No 83
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=27.98 E-value=62 Score=26.60 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHhhccCCCCccc-CchhHHHhhcCChHHHHHHHHHHHhh
Q 014877 98 NQAEFEALLQEFKTDYNQTHFVR-NKEFKEAADKMQGPLRQIFVEFLERS 146 (416)
Q Consensus 98 ~r~E~~Aml~Efr~DyNr~HFvR-~~eF~~~~d~l~~e~R~~FidFLerS 146 (416)
..+|++.++.+=-.-..-+---- .==|+..|.+++++.|+.+++.|++.
T Consensus 15 s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~ 64 (65)
T PF14098_consen 15 SKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDESEKQEMVNTLEQG 64 (65)
T ss_pred CHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45777777776433111110000 00389999999999999999999763
No 84
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=27.05 E-value=34 Score=36.19 Aligned_cols=25 Identities=32% Similarity=0.736 Sum_probs=21.1
Q ss_pred CcccchhhhhHhhhhhcccchhHHH
Q 014877 247 FQCYPIFKYFENWCQDENRHGDFFS 271 (416)
Q Consensus 247 ~r~~PIFk~FE~WCqDEnRHGDfFa 271 (416)
..-.|.=+|-..|--.||||||...
T Consensus 152 ~~~~~W~~Wvr~WTAEENRHgdlL~ 176 (390)
T PLN00179 152 ASATPWARWTRAWTAEENRHGDLLN 176 (390)
T ss_pred CCCCchhhhccccccccchHHHHHH
Confidence 3456778999999999999999765
No 85
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=1.5e+02 Score=34.07 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=57.8
Q ss_pred HHHHHHhhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcccccccccCChhhHHHHHHHHHHHHHHHH
Q 014877 294 CLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRRLDRMVEINERLLA 365 (416)
Q Consensus 294 LLsVfaTMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd~P~F~~~Ldr~~~~n~kl~~ 365 (416)
||..-++.|+|=+.-++|-+|..=|-+.||...|+..-.+..+-. +-+|.+.+.|...+.--++.+-
T Consensus 773 LL~~~~~VYinl~~es~FveaVA~D~rsf~~~~F~rA~~I~~~k~-----L~s~~~IE~l~~f~nr~E~~r~ 839 (929)
T COG5113 773 LLRRMVMVYINLRSESKFVEAVASDKRSFDIDFFRRALRICENKY-----LISESQIEELRSFINRLEKVRV 839 (929)
T ss_pred HHHHHHHHhhhhcchHHHHHHHHcccccccHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999999999999888888765 6789999999888877776663
No 86
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=25.61 E-value=33 Score=32.89 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=16.5
Q ss_pred CcccchhhhhHhhhhhcccch
Q 014877 247 FQCYPIFKYFENWCQDENRHG 267 (416)
Q Consensus 247 ~r~~PIFk~FE~WCqDEnRHG 267 (416)
..+.|-+.|++.||.||..-|
T Consensus 211 ~~Lp~~w~~~~~~~~~~~~~~ 231 (248)
T cd06432 211 FSLPQEWLWCETWCSDESKKK 231 (248)
T ss_pred EECChHHHHHHHHhcccccCc
Confidence 335667899999999998644
No 87
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=24.61 E-value=1.1e+02 Score=30.60 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCCCccccChHHHhhccccccCccccHHHH---HHHHHHHhhccCCCCcccCchhH-HHhhcCChHHHHHHHHHHHhhhh
Q 014877 73 LTPRFYTTDFDEMETLFNTEINKKLNQAEF---EALLQEFKTDYNQTHFVRNKEFK-EAADKMQGPLRQIFVEFLERSCT 148 (416)
Q Consensus 73 LTPRFYTTDFd~m~~lf~~eid~s~~r~E~---~Aml~Efr~DyNr~HFvR~~eF~-~~~d~l~~e~R~~FidFLerScT 148 (416)
++|+..-.+-.++-.- =+...+||| +.+++.|++-.-.---.+.+... +...++....-..++|=|.=+-.
T Consensus 90 ~~~~~~~P~~~eLv~~-----Ms~LarEEL~HFeqVl~im~~RGi~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~Al 164 (240)
T PF06175_consen 90 LQPKSHYPEKEELVDK-----MSRLAREELHHFEQVLEIMKKRGIPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVGAL 164 (240)
T ss_dssp ----------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHTT---------SHHHHHHTTS-SSTTHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHHHh
Confidence 5566666665554331 133467775 56778887766555556666663 34444443344678887765555
Q ss_pred ccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhh-hhhhhhcccc
Q 014877 149 AEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG-FLNKGLSDFN 197 (416)
Q Consensus 149 aEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAG-FlNkal~Df~ 197 (416)
=|--||==|+=|+-.+ .|.|++.+.-+-+.||||-+ ||+-|-.-++
T Consensus 165 IEARSCERF~lLa~~l---D~eL~~FY~~Ll~SEArHy~~yl~LA~~y~~ 211 (240)
T PF06175_consen 165 IEARSCERFALLAEHL---DEELAKFYRSLLRSEARHYQDYLKLARQYFD 211 (240)
T ss_dssp HHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HhhhhHHHHHHHHHhh---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC
Confidence 5666677788888888 69999999999999999965 7776665554
No 88
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=24.45 E-value=1.8e+02 Score=25.70 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=107.3
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc---CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc
Q 014877 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT---NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (416)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~Rrlk~~---NP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~rkYTfF~ 215 (416)
.++-|-+=.+.|+.....|--++.-..+. -|-++..|.-.|-+|-.||-=|=+-+.+-|-.++++-+.+-++..+=.
T Consensus 4 i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~~~~ 83 (161)
T cd01056 4 CEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDEWGS 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcccCC
Confidence 34556666788999999999888877655 689999999999999999998888899999999999988886456667
Q ss_pred chhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHh-hhhhcccchhHHHHHHh
Q 014877 216 PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFEN-WCQDENRHGDFFSALMK 275 (416)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~-WCqDEnRHGDfFaalmr 275 (416)
+.=++=+.+=-||.-=-+|-.|++.=+++-|+...-. ++. +-.++-.|-+-+.-++.
T Consensus 84 ~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~f---l~~~fl~eQ~e~~~~~~~~l~ 141 (161)
T cd01056 84 GLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADF---LESEFLEEQVESIKKLAGYIT 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHH---HHHHhhHHHHHHHHHHHHHHH
Confidence 8888888888899988999999999999877666554 444 45566666666655443
No 89
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=24.17 E-value=58 Score=26.16 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHhhcc-CCCCcccCchhHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhh
Q 014877 98 NQAEFEALLQEFKTDY-NQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRL 164 (416)
Q Consensus 98 ~r~E~~Aml~Efr~Dy-Nr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrl 164 (416)
|..=++..+.||.=+. |-++|.=| -+.+=.|+. -||+.| ++. .|=+||+.+.+||
T Consensus 10 V~~WL~w~~~ef~L~~~~~~~F~m~---Gk~LC~ls~------edF~~r--~P~-~GdiL~~~lq~~l 65 (66)
T cd08536 10 VRTWLRWVSARYQLEVVDLDKFLMN---GKGLCLMSL------EGFLYR--VPV-GGKLLYEDFQRRL 65 (66)
T ss_pred HHHHHHHHHHHhCCCCCCccccCCC---HHHHHcCCH------HHHHhh--cCC-ccHHHHHHHHHHh
Confidence 3344566777777766 55555322 123445553 366666 344 9999999999998
No 90
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=23.04 E-value=78 Score=27.03 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=41.9
Q ss_pred HHHHhhhhcccc-chhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcc
Q 014877 141 EFLERSCTAEFS-GFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSD 195 (416)
Q Consensus 141 dFLerScTaEFS-GflLYKEl~Rrlk~~-NP~lae~F~lMaRDEARHAGFlNkal~D 195 (416)
+=|+.+-..|-. ..-.|+++.+.-.+. ....+.+|.-++.||.+|+-.+=++|.+
T Consensus 76 ~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 76 ENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555566663 456788877766544 7889999999999999999998888765
No 91
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=21.78 E-value=61 Score=34.35 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHhhh------hccccchh--hHHHHhhhhccc----------CccHHHHhhccccchhhhhhhh
Q 014877 131 MQGPLRQIFVEFLERSC------TAEFSGFL--LYKELGRRLKKT----------NPVVAEIFSLMSRDEARHAGFL 189 (416)
Q Consensus 131 l~~e~R~~FidFLerSc------TaEFSGfl--LYKEl~Rrlk~~----------NP~lae~F~lMaRDEARHAGFl 189 (416)
.|+..=+.-+.+|..|= ..-+-||+ -|+|+.-++-.. +|.++.+-+-.|.||.||.-|-
T Consensus 185 VDm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY 261 (390)
T PLN00179 185 VDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAY 261 (390)
T ss_pred cCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHH
Confidence 45555555666666432 12334443 577877665433 5999999999999999998653
No 92
>PTZ00184 calmodulin; Provisional
Probab=21.77 E-value=1.8e+02 Score=23.58 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=39.6
Q ss_pred ccCCCCcccCchhHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc------CccHHHHhhccccchhhh
Q 014877 112 DYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT------NPVVAEIFSLMSRDEARH 185 (416)
Q Consensus 112 DyNr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~~------NP~lae~F~lMaRDEARH 185 (416)
|.|+.-.+-.++|...+..+.......-+.-+.+.+-..-+|.|-|+|..+=+... -..+..+|...-.|.
T Consensus 21 D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~--- 97 (149)
T PTZ00184 21 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDG--- 97 (149)
T ss_pred cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCC---
Confidence 66666667777776555433222223344444454555556777777766543211 124556666654332
Q ss_pred hhhhh
Q 014877 186 AGFLN 190 (416)
Q Consensus 186 AGFlN 190 (416)
.|+|+
T Consensus 98 ~g~i~ 102 (149)
T PTZ00184 98 NGFIS 102 (149)
T ss_pred CCeEe
Confidence 35554
No 93
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=21.69 E-value=66 Score=31.53 Aligned_cols=52 Identities=23% Similarity=0.458 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhccchhHHhhcCCChhhhhHHHHHHhhhhhhcccccccccC
Q 014877 286 AKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVE 345 (416)
Q Consensus 286 ~kLW~RFFLLsVfaTMyl~D~~R~~Fy~alGld~~~yD~~Vi~~TN~ta~rvFP~vLdvd 345 (416)
..-|+|--+ |-|.||.-|..-.||+.||-.--+ -| .-...+.+..|.+++-.
T Consensus 108 ~E~~~R~~g---f~~~yLsT~DQ~~FYe~lGYe~c~---Pi--~~~~~~~c~LPa~~~~~ 159 (225)
T KOG3397|consen 108 TEKWMREKG---FNEAYLSTDDQCRFYESLGYEKCD---PI--VHSTTATCILPAMNHFQ 159 (225)
T ss_pred HHHHHHHhh---hhheeeecccchhhhhhhcccccC---ce--ecccccceechhhhhhh
Confidence 566788766 889999999999999999964221 11 11234455667666543
No 94
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=21.21 E-value=54 Score=24.17 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=7.7
Q ss_pred hhhhhHhhhh
Q 014877 252 IFKYFENWCQ 261 (416)
Q Consensus 252 IFk~FE~WCq 261 (416)
|++||..|+.
T Consensus 15 I~dyfr~~K~ 24 (35)
T PF08763_consen 15 IQDYFRQFKK 24 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788888874
No 95
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=20.93 E-value=71 Score=26.78 Aligned_cols=30 Identities=33% Similarity=0.657 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhh
Q 014877 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRL 164 (416)
Q Consensus 135 ~R~~FidFLerScTaEFSGflLYKEl~Rrl 164 (416)
.++-|++||..+|..||.-.+==..|..+|
T Consensus 7 ~~~Q~~~~l~~~~~~Ef~~I~~Er~v~~kL 36 (109)
T PF03980_consen 7 VHQQMIEFLEENCKKEFEEILEERDVVEKL 36 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 467799999999999999876555555555
No 96
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=20.73 E-value=25 Score=27.87 Aligned_cols=22 Identities=27% Similarity=0.609 Sum_probs=17.9
Q ss_pred Hhhhhhhccch-hHHhhcCCChh
Q 014877 299 VTMYLNDCQRT-AFYEGIGLDTK 320 (416)
Q Consensus 299 aTMyl~D~~R~-~Fy~alGld~~ 320 (416)
++++++|.+|+ +||+.||+...
T Consensus 4 i~l~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 4 VGIVVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred EEEEeccHHHHHHHHHHhCceec
Confidence 57788999975 79999998653
No 97
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=20.43 E-value=86 Score=26.89 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=46.0
Q ss_pred hcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc-cCccHHHHhhccccchhhhhhhhhhhhccc
Q 014877 129 DKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (416)
Q Consensus 129 d~l~~e~R~~FidFLerScTaEFSGflLYKEl~Rrlk~-~NP~lae~F~lMaRDEARHAGFlNkal~Df 196 (416)
..+|+.++..|..=+ ..|-..-=.|+++.+.-.+ .....+..|..++.+|.+|+-.+-++|..+
T Consensus 58 ~~i~~~~~~~le~a~----~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 58 GKVSEDTKENLEMML----EGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred hcCcccHHHHHHHHH----HhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566666655544 3444444457887776633 489999999999999999999999888754
No 98
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=20.26 E-value=86 Score=29.32 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=71.0
Q ss_pred hccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccc------------ccccccccccCcccccc
Q 014877 148 TAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNY------------ALDLGFLTKARKYTFFK 215 (416)
Q Consensus 148 TaEFSGflLYKEl~Rrlk~~NP~lae~F~lMaRDEARHAGFlNkal~Df~l------------~lDLgfLtk~rkYTfF~ 215 (416)
..|+.-.-+|+--..-++. +|.+.+.+..|...|..|..+.++-|...|+ +.=||.+|. ..-
T Consensus 12 AGE~~A~~iY~gQ~~~~~~-~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~ta-----l~G 85 (172)
T PF03232_consen 12 AGEVGAVRIYRGQLAVARR-DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGALTA-----LLG 85 (172)
T ss_pred HHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHHHH-----hhc
Confidence 4455556677765555532 8999999999999999999999999998874 222333332 223
Q ss_pred chhhhhhhhcccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhhcccchhHH
Q 014877 216 PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFF 270 (416)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~FE~WCqDEnRHGDfF 270 (416)
+++.+..|.=-|..==-=|=---|.|..+.+..-..+-.-++.-+.||-.|.|-=
T Consensus 86 ~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~~~r~DE~~H~d~A 140 (172)
T PF03232_consen 86 DKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIEQFRDDELEHRDTA 140 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443211222222333443211222235556778899999999853
Done!