Query 014878
Match_columns 416
No_of_seqs 208 out of 1338
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cnq_A Phosphoribosylaminoimid 100.0 9.9E-91 3.4E-95 684.3 24.6 274 101-392 3-305 (306)
2 3r9r_A Phosphoribosylaminoimid 100.0 6.1E-91 2.1E-95 684.2 22.3 271 110-393 9-295 (301)
3 3u55_A Phosphoribosylaminoimid 100.0 4.6E-79 1.6E-83 584.0 17.7 231 112-392 3-237 (238)
4 2ywv_A Phosphoribosylaminoimid 100.0 2.3E-78 7.8E-83 580.7 15.8 230 112-390 6-240 (244)
5 2gqr_A Phosphoribosylaminoimid 100.0 1.4E-77 4.6E-82 573.2 20.0 227 113-389 4-235 (237)
6 1kut_A Phosphoribosylaminoimid 100.0 2.1E-77 7.2E-82 569.7 18.6 224 115-389 1-227 (230)
7 3kre_A Phosphoribosylaminoimid 100.0 4.5E-77 1.5E-81 576.4 17.0 229 111-388 23-259 (263)
8 2z02_A Phosphoribosylaminoimid 100.0 1.8E-76 6.2E-81 566.9 16.6 227 111-386 9-239 (242)
9 3nua_A Phosphoribosylaminoimid 100.0 6.3E-76 2.1E-80 562.0 16.6 225 113-387 8-237 (238)
10 2h31_A Multifunctional protein 100.0 6.2E-71 2.1E-75 563.7 17.1 236 113-388 10-258 (425)
11 2r85_A PURP protein PF1517; AT 25.0 50 0.0017 30.4 3.6 51 267-326 239-290 (334)
12 2nn6_E Exosome complex exonucl 21.0 21 0.00072 34.2 0.1 34 64-97 3-36 (305)
No 1
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A*
Probab=100.00 E-value=9.9e-91 Score=684.29 Aligned_cols=274 Identities=38% Similarity=0.651 Sum_probs=256.2
Q ss_pred ccccccccCCCC-CCcccccccceeeecC-CeEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhccCCCCccccc
Q 014878 101 LSETNLHLTVPG-LKSKTRGKVRDIYDGG-DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVIS 177 (416)
Q Consensus 101 l~~t~l~~~~~~-l~~iyeGKvKdVY~~~-d~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIptHfV~ 177 (416)
|.+|+| |+ ++++|+||||+||+++ +.+||+||||+||||++++ .|||||++||+||+|||++|++|||||||+
T Consensus 3 ~~~~~~----~~~~~~ly~GKvkdvY~~~d~~ll~v~~DriSAfD~~~~~~IpgKG~vl~~iS~~~F~~L~~~iptH~i~ 78 (306)
T 2cnq_A 3 ITKTEL----DGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVD 78 (306)
T ss_dssp CCSCCC----TTSSCEEEECSSEEEEEEETTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTTTTSEESBCC
T ss_pred cccccc----cccccccccCCceEEEEcCCCEEEEEEeCCCCCcccccCCCCCcHhHHHHHHHHHHHHHHhccCCcceee
Confidence 345555 77 9999999999999997 5899999999999999986 899999999999999999999999999996
Q ss_pred C----------------------CCCCeEEEeccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCC
Q 014878 178 S----------------------PDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQK 235 (416)
Q Consensus 178 ~----------------------~~~~~~ivkk~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~k 235 (416)
. +++++|+||||+|||||||||||+||| +|++|++ .+++||+.||+|+++|++
T Consensus 79 ~~~~~~~~~~~P~~~~~y~y~~~l~~r~~lvkk~~~iPlE~VvR~y~tGS----~~k~y~~-~~~v~Gi~lp~Gl~eg~~ 153 (306)
T 2cnq_A 79 IAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGS----AWKEYVK-TGTVHGLKQPQGLKESQE 153 (306)
T ss_dssp CCTTCCGGGGSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHH----HHHHHHH-HSEETTEECCTTCCTTCE
T ss_pred cccccccccccccccccccchhhcCCceEEEEecceeeEEEEEeeeeccc----hHHHHhc-cCccccccCCCCCcccCC
Confidence 3 467889999999999999999999999 5999998 599999999999999999
Q ss_pred CCCceeeeccCCC--CCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecC-CcEEE
Q 014878 236 LPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSD-DSILL 312 (416)
Q Consensus 236 L~~PI~epstK~d--~hD~~Is~e~~~~lglv~~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~-GeIvL 312 (416)
||+|||||+||+| +|||+||++++++ +++++++++|+++|++||++++++|+++||+|||||||||++.+ |+|+|
T Consensus 154 Lp~Pi~tp~tK~d~~~hD~~Is~~~~~~--~~~~e~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~d~~~G~ivL 231 (306)
T 2cnq_A 154 FPEPIFTPSTKAEQGEHDENISPAQAAE--LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIIL 231 (306)
T ss_dssp EEEEEECCBCCCC---CCCBCCHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEEE
T ss_pred CCCCEEEeeecccccCCCCCCCHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeEEeCCCCcEEE
Confidence 9999999999999 4999999999998 79999999999999999999999999999999999999999977 99999
Q ss_pred EeeecCCCCcceeeccchhhhhcCCCCCCCCcHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q 014878 313 IDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKD-HCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRF 391 (416)
Q Consensus 313 iDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~~R~wl~~-~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~~~ 391 (416)
+|||+||||||||++++|+ .|+.|++|||||||+||.+ .|+ ..++|+||+|++++|+++|+++|++|||++|
T Consensus 232 ~DEI~TPDSsR~W~~~~y~----~G~~~~s~DKq~~R~~l~~~g~~---~~~~p~lp~~vv~~~~~~Y~e~~erltg~~~ 304 (306)
T 2cnq_A 232 VDEVLTPDSSRFWNGASYK----VGESQDSYDKQFLRDWLTANKLN---GVNGVKMPQDIVDRTRAKYIEAYETLTGSKW 304 (306)
T ss_dssp ESCCSCTTTEEEEETTTCC----TTSCCCCSSTHHHHHHHHHTTCT---TCTTCCCCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred EEeecCCCccceecccccc----CCCCCcccCHHHHHhHHhhcCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999998 4999999999999999986 354 3348999999999999999999999999988
Q ss_pred C
Q 014878 392 D 392 (416)
Q Consensus 392 ~ 392 (416)
.
T Consensus 305 ~ 305 (306)
T 2cnq_A 305 S 305 (306)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A {Mycobacterium abscessus}
Probab=100.00 E-value=6.1e-91 Score=684.23 Aligned_cols=271 Identities=35% Similarity=0.614 Sum_probs=254.3
Q ss_pred CCCCCcccccccceeeecCC-eEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhccCCCCcccccCC--------
Q 014878 110 VPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISSP-------- 179 (416)
Q Consensus 110 ~~~l~~iyeGKvKdVY~~~d-~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIptHfV~~~-------- 179 (416)
+|+++++|+||||+||+++| .+||+||||+||||++++ .|||||++||+||+|||++|+ ||||||+.+
T Consensus 9 ~~~~~~ly~GKvk~vY~~~d~~ll~v~~DriSAfD~~~~~~IpgKG~vl~~iS~~~F~~L~--IptH~i~~~~~~~~p~~ 86 (301)
T 3r9r_A 9 LSDYQHVASGKVRELYRVDDEHLLFVATDRISAFDFVLDTPIPDKGRILTAMSVFFFGLLT--VPNHLAGPPDDPRIPEE 86 (301)
T ss_dssp GGGSEEEEECSSEEEEECSSSEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHSC--SCBCBCSCTTCTTSCGG
T ss_pred CCCCceeecccceEEEEcCCCcEEEEEeCCCcCccccCCCCCCcHHHHHHHHHHHHHHhhC--CCeeEeeccCccccccc
Confidence 48999999999999999987 799999999999999987 899999999999999999999 999999986
Q ss_pred -CCCeEEEeccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC--CCCCCCH
Q 014878 180 -DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED--HDVPVTP 256 (416)
Q Consensus 180 -~~~~~ivkk~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~--hD~~Is~ 256 (416)
.+++|+||+|+|||||||||||+||| +|++|+++ +++||+.||+|+++|++|++|||||+||+|. ||++||+
T Consensus 87 ~~~r~~lvkk~~~iPlEvVvR~y~tGS----~~kry~~~-g~vcGi~lp~Gl~eg~~L~~Pi~e~~tK~d~~~hD~~Is~ 161 (301)
T 3r9r_A 87 VLGRALLVRRLDMLPVECVARGYLTGS----GLLDYQRT-GAVCGHVLPQGLGEASRLDPPLFTPATKADIGEHDMNVDF 161 (301)
T ss_dssp GTTSEEEEECCEECSCBEEEEEEECHH----HHHHHHHH-SEETTEECCTTCCTTEEEEEEEECCEECCCSSSCCEECCH
T ss_pred ccCceEEEEEccccceEEEEEeeecch----hHHHhhcc-CccccccCCccccccccCCCCEEEeeeccccCCCCCCcCH
Confidence 45899999999999999999999999 59999996 9999999999999999999999999999993 9999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcC
Q 014878 257 DEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQS 336 (416)
Q Consensus 257 e~~~~lglv~~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~ 336 (416)
+++++ +++.+++++|+++|++||++++++|+++||+|||||||||++.+|+|+|+|||+|||||||||+++|+ +
T Consensus 162 ~~~~~--~~g~~~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~d~~G~ivL~DEI~TPDSsR~W~~~~y~----~ 235 (301)
T 3r9r_A 162 AAVVG--LVGAVRANQLRDETIKIYTRAAAHALHKGIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHYQ----P 235 (301)
T ss_dssp HHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEECTTSCEEECSCCSCTTTEEEEEGGGCC----T
T ss_pred HHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEeeEcCCCcEEEEeecCCCcccccccccccc----C
Confidence 99986 58899999999999999999999999999999999999999989999999999999999999999998 4
Q ss_pred CCCCCCCcHHHHHHHHHh---cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q 014878 337 GLEPENVDKEFLRLWFKD---HCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFDV 393 (416)
Q Consensus 337 G~~~~s~DKq~~R~wl~~---~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~~~~~ 393 (416)
|+.|+||||||||+||.+ .|+...++++|+||+|+|++|+++|+++||+|||++|..
T Consensus 236 g~~~~s~DKq~~R~~l~~~~~~~~~~~~~~~p~lP~evv~~t~~~Y~e~~e~lTg~~f~~ 295 (301)
T 3r9r_A 236 GVVQDSFDKQFVRNWLTGPESGWDRASDTPPPPLPDEVAVATRERYIEAYERISGLSFSD 295 (301)
T ss_dssp TSCCCCTTTHHHHHHHTSSSSCCCTTC--CCCCCCHHHHHHHHHHHHHHHHHHHSSCGGG
T ss_pred CCCCcccchHHHHhhccccccCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHh
Confidence 999999999999999987 354434678999999999999999999999999999863
No 3
>3u55_A Phosphoribosylaminoimidazole-succinocarboxamide S; saicar synthetase-like fold, ligase, ATP-binding, NOVO purine biosynthesis; 1.90A {Pyrococcus horikoshii} PDB: 3u54_A
Probab=100.00 E-value=4.6e-79 Score=583.96 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=205.7
Q ss_pred CCCcccccccceeeecCC-eEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCcccccCCCCCeEEEec
Q 014878 112 GLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTIAKK 188 (416)
Q Consensus 112 ~l~~iyeGKvKdVY~~~d-~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIptHfV~~~~~~~~ivkk 188 (416)
.+++||+||||+||++++ .+||+||||+||||++++ .|||||++||+||+|||++|+ +||||||++.+++++|+||+
T Consensus 3 k~~~iy~GKvk~vy~~~~~~ll~~~~DriSAfD~~~~~~IpgKG~~l~~iS~~~F~~L~~~gi~th~i~~~~~r~~lvkk 82 (238)
T 3u55_A 3 KLMEVYEGKAKKMIPIDDDKLIMEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIVEK 82 (238)
T ss_dssp ---------CEEEEECSSSEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEECSTTEEEEEC
T ss_pred ccccceeccceeEEEcCCCEEEEEEeCCccccCcccCCCCCChHHHHHHHHHHHHHHHHhcCCCCccccccccceeeeee
Confidence 467999999999999876 899999999999999986 899999999999999999996 89999999999999999999
Q ss_pred cceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC-CCCCCCHHHHHHcCCCCH
Q 014878 189 CSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTE 267 (416)
Q Consensus 189 ~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~-hD~~Is~e~~~~lglv~~ 267 (416)
|+|||||||||||+|||+ |++| | +.+|++||+|||||+||+|+ |||+||++++.++|+ +.
T Consensus 83 ~~~iPiE~VvR~y~tGS~----~k~~--g------------l~eg~~l~~Pi~e~~~K~d~~~Dp~I~~~~~~~~gi-~~ 143 (238)
T 3u55_A 83 LDMYPLEVVVRNVVAGSL----KKRL--P------------LPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGI-SL 143 (238)
T ss_dssp CEECSEEEEEEEECCGGG----GGTS--S------------CCTTCEEEEEEEEEEECCTTTTSCEECHHHHHHTTC-CH
T ss_pred ecCCceEEEEecccccch----hccc--C------------CCCCccCCCCccccccccccCCCCCCCHHHHHHHhc-cc
Confidence 999999999999999995 6666 2 44568899999999999985 999999999999986 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcCCCCCCCCcHHH
Q 014878 268 AEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEF 347 (416)
Q Consensus 268 ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~ 347 (416)
+++++|+++|++||++++++|+++||+|||||||||+|.+|+|+|+||| |||||||||++++ ++||||+
T Consensus 144 ee~~~i~~~al~i~~~~~~~~~~~GiiLvDtK~EFG~d~~g~ivL~DEi-TPDssR~W~~~~~----------~~lDKq~ 212 (238)
T 3u55_A 144 DEIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEI-SPDTCRFWDAKTK----------RSLDKDV 212 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECEEECTTSCEEECSCC-STTTEEEEETTTC----------CBCSTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCEEEeeEEEEEEcCCCCEEEEEec-CCCccccccCCCc----------cccChHH
Confidence 8999999999999999999999999999999999999999999999999 9999999998775 5899999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCC
Q 014878 348 LRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSRFD 392 (416)
Q Consensus 348 ~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~~~~ 392 (416)
||+|+. .+.++|.++|++|||++|+
T Consensus 213 ~R~~~~--------------------~v~e~Y~e~~~rltG~~~e 237 (238)
T 3u55_A 213 FRFDKG--------------------DLIEAYKEIYERITGEKPE 237 (238)
T ss_dssp HHTTCS--------------------CHHHHHHHHHHHHHSSCCC
T ss_pred hhcccc--------------------chHHHHHHHHHHhhCCCCC
Confidence 996642 2557899999999999986
No 4
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.3e-78 Score=580.67 Aligned_cols=230 Identities=29% Similarity=0.391 Sum_probs=215.5
Q ss_pred CCCcccccccceeeecCC--eEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCcccccCCCCCeEEEe
Q 014878 112 GLKSKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTIAK 187 (416)
Q Consensus 112 ~l~~iyeGKvKdVY~~~d--~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIptHfV~~~~~~~~ivk 187 (416)
.++++|+||||+||+++| .++|+||||+||||++++ +|||||++||+||+|||++|+ +|||||||+.+++++|+||
T Consensus 6 ~~~~lyeGK~K~vY~~~d~~~ll~~~kDrisAfd~~~~~~I~gKG~~~n~iS~~~F~~L~~~giptH~i~~~~~~~~lvk 85 (244)
T 2ywv_A 6 KQQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANHFIEKLSPTEQLVR 85 (244)
T ss_dssp EEEEEEECSSEEEEEESSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEECSSSEEEEE
T ss_pred cccccccccCeEEEECCCCCEEEEEEcCCccccccccCCCCCChhHHHHHHHHHHHHHHHhCCCCceEecccCCCEEEEE
Confidence 357899999999999975 799999999999999986 899999999999999999997 9999999999999999999
Q ss_pred ccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC-CCCCCCHHHHHHcCCCC
Q 014878 188 KCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMT 266 (416)
Q Consensus 188 k~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~-hD~~Is~e~~~~lglv~ 266 (416)
+|+|||||||||||+||| +|++| | +++|++||+|||||+||+|+ |||+||++++.++|++|
T Consensus 86 k~~~iPlEvVvR~~aaGS----~~kry--G------------l~eg~~L~~Pi~e~~~K~d~~~Dp~I~~~~~~~~~~~~ 147 (244)
T 2ywv_A 86 RVTIIPLEVVVRNVVAGS----LAKRI--G------------LEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLAS 147 (244)
T ss_dssp CCEECSEEEEEEEEECHH----HHHHH--T------------CCTTEEEEEEEEEEEECCGGGTCCEECHHHHHHHTSSC
T ss_pred EcccccEEEEEEeeeccc----cHHhc--C------------CccCcCCCCCEEEEEecCCcCCCCCCCHHHHHHhccCC
Confidence 999999999999999999 58888 2 56779999999999999995 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcCCCCCCCCcHH
Q 014878 267 EAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKE 346 (416)
Q Consensus 267 ~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq 346 (416)
++++++|+++|++||++++++|+++||+|||||||||++.+|+|+|+||| |||||||||++++ ++||||
T Consensus 148 ~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~~~~G~ivL~DEI-tPDs~R~W~~~~~----------~~~DK~ 216 (244)
T 2ywv_A 148 REEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADGAILLADEI-SPDTCRLWDAKTN----------EKLDKD 216 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEECTTSCEEECSCC-STTTEEEEETTTC----------CBCSTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEcCCCCEEEEeee-cCCcceeeeCCCC----------cccCHH
Confidence 99999999999999999999999999999999999999989999999999 9999999999874 589999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q 014878 347 FLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKSR 390 (416)
Q Consensus 347 ~~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~~ 390 (416)
+||+||.+ +.++|.++|++|||++
T Consensus 217 ~~R~~l~~--------------------v~~~Y~ev~~rl~g~~ 240 (244)
T 2ywv_A 217 VFRRDLGS--------------------LTDAYEVILQRLGGES 240 (244)
T ss_dssp HHHTTCSC--------------------HHHHHHHHHHHTTCC-
T ss_pred HHHhhHHH--------------------HHHHHHHHHHHHhCCc
Confidence 99999851 3478999999999974
No 5
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A*
Probab=100.00 E-value=1.4e-77 Score=573.23 Aligned_cols=227 Identities=25% Similarity=0.330 Sum_probs=214.5
Q ss_pred CCcccccccceeeecCC--eEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCcccccCCCCCeEEEec
Q 014878 113 LKSKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTIAKK 188 (416)
Q Consensus 113 l~~iyeGKvKdVY~~~d--~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIptHfV~~~~~~~~ivkk 188 (416)
.+++|+||||+||+++| .++|+||||+||||++++ +|||||++||+||+|||++|+ +|||||||+.+++++|+||+
T Consensus 4 ~~~lyeGK~K~vY~~~d~~~ll~~~kDr~sAfd~~~~~~I~gKG~~~~~iS~~~F~~L~~~giptH~i~~~~~~~~lvkk 83 (237)
T 2gqr_A 4 QAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKK 83 (237)
T ss_dssp CEEEEECSSEEEEECSSTTEEEEEECSEECCTTTTCCEECTTHHHHHHHHHHHHHHHHHHTTCCBCEEEECSSSEEEEEC
T ss_pred CCccccCCCeEEEECCCCCEEEEEEeCCCcccccccCCCCCChHHHHHHHHHHHHHHHHhcCCCceEEeeeCCCEEEEEE
Confidence 46899999999999875 799999999999999987 899999999999999999998 89999999999999999999
Q ss_pred cceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC-CCCCCCHHHHHHcCCCCH
Q 014878 189 CSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTE 267 (416)
Q Consensus 189 ~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~-hD~~Is~e~~~~lglv~~ 267 (416)
|+|||||||||||+||| +|++| | +++|++||+|||||+||+|. |||+||+++++++|++|+
T Consensus 84 ~~~iPlEvVvR~~a~GS----~~kry--G------------l~eg~~L~~Pi~e~~~K~d~~~Dp~I~~~~~~~~~~~~~ 145 (237)
T 2gqr_A 84 LDMVPVECVVRNRAAGS----LVKRL--G------------IEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSK 145 (237)
T ss_dssp CEECSEEEEEEEECCHH----HHHHH--C------------CCTTCEEEEEEEEEEECCGGGTCCEECHHHHHHTTSSCH
T ss_pred cceeeEEEEEEeeeccc----hHHhc--C------------CccccCCCCCEEEeeecCCcCCCCCCCHHHHHHhccCCH
Confidence 99999999999999999 58888 3 56789999999999999995 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcCCCCCCCCcHHH
Q 014878 268 AEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEF 347 (416)
Q Consensus 268 ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~ 347 (416)
+++++|+++|++||++++++|+++||+|||||||||++ +|+|+|+||| |||||||||++++ ++||||+
T Consensus 146 ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~~-~G~ivL~DEI-tPDs~R~W~~~~~----------~~~DK~~ 213 (237)
T 2gqr_A 146 ENLARMKELTYKANDVLKKLFDDAGLILVDFKLEFGLY-KGEVVLGDEF-SPDGSRLWDKETL----------EKMDKDR 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEE-TTEEEEESCC-STTSEEEEETTTC----------CBCSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEeE-CCEEEEEEEe-cCCccccccCCCC----------cccCHHH
Confidence 99999999999999999999999999999999999998 8999999999 9999999999886 4899999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q 014878 348 LRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKS 389 (416)
Q Consensus 348 ~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~ 389 (416)
||+||. .+.++|.++|++|..|
T Consensus 214 ~R~~l~--------------------~~~~~Y~ev~~rl~~~ 235 (237)
T 2gqr_A 214 FRQSLG--------------------GLIEAYEAVARRLGVQ 235 (237)
T ss_dssp HHTTCC--------------------CHHHHHHHHHHHHTCC
T ss_pred HHHhHH--------------------HHHHHHHHHHHHHhhh
Confidence 999975 2889999999999654
No 6
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1
Probab=100.00 E-value=2.1e-77 Score=569.74 Aligned_cols=224 Identities=25% Similarity=0.292 Sum_probs=197.1
Q ss_pred cccccccceeeecCCeEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCcccccCCCCCeEEEecccee
Q 014878 115 SKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTIAKKCSVI 192 (416)
Q Consensus 115 ~iyeGKvKdVY~~~d~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIptHfV~~~~~~~~ivkk~~mI 192 (416)
++|+||||+||+++|.++|+||||+||||++++ .|||||++||+||+|||++|+ +|||||||+.+++++|+||+|+||
T Consensus 1 ~ly~GK~k~vY~~~d~ll~~~~Dr~sAfd~~~~~~I~gKG~~~~~iS~~~F~~L~~~giptH~i~~~~~~~~lvkk~~~i 80 (230)
T 1kut_A 1 MNYEGKTKIVKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLVEYIPPRTLKVIPLKMF 80 (230)
T ss_dssp ------CEEEEEETTEEEEEECCC-----------CCSHHHHHHHHHHHHHHHHHHTTCCBSEEEEETTTEEEECCCEEC
T ss_pred CCccccceEEEEcCCEEEEEEeCCCcccccccCCCCCccCHHHHHHHHHHHHHHHhCCCCceEEeecCCCEEEEEEceee
Confidence 479999999999988999999999999999986 899999999999999999998 999999999999999999999999
Q ss_pred eeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC-CCCCCCHHHHHHcCCCCHHHHH
Q 014878 193 PVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEFD 271 (416)
Q Consensus 193 PlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~-hD~~Is~e~~~~lglv~~ee~~ 271 (416)
|||||||||+||| +|++| | +++|++||+|||||+||+|+ |||+||++++.++|++|+++++
T Consensus 81 PlEvVvR~~a~GS----~~kry--G------------l~eg~~L~~Pi~e~~~K~d~~~Dp~Is~~~~~~~~~~~~ee~~ 142 (230)
T 1kut_A 81 PLEVVVRLKKAGS----FVRRY--G------------GAEGEDLPVPLVEFFIKDDERHDPMVCVDHLEILGIATKKQAE 142 (230)
T ss_dssp SEEEEEEEECCHH----HHHHH--C------------CCTTCEEEEEEEEEEECCGGGTCCBCCHHHHHHTTSCCHHHHH
T ss_pred eEEEEEEeeeccc----hHHhc--C------------CccCcCCCCCEEEEEecCccCCCCCCCHHHHHHhccCCHHHHH
Confidence 9999999999999 58888 2 56789999999999999986 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcCCCCCCCCcHHHHHHH
Q 014878 272 EASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLW 351 (416)
Q Consensus 272 ~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~~R~w 351 (416)
+|+++|++||++++++|+++||+|||||||||++.+|+|+|+||| ||||||||| + | ++||||+||+|
T Consensus 143 ~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~~~~G~ivL~DEI-tPDs~R~W~--~-------~---~~~DK~~~R~~ 209 (230)
T 1kut_A 143 KMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDGNVVLGDEI-SPDTFRLRK--K-------G---EIFDKDVYRRD 209 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTEEEEEEEECEEECTTCCEEECSCC-STTTEEEEE--T-------T---CCCCHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEcCCCCEEEEEee-cCCcccccC--C-------C---cccCHHHHHHh
Confidence 999999999999999999999999999999999989999999999 999999999 2 2 68999999999
Q ss_pred HHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q 014878 352 FKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITKS 389 (416)
Q Consensus 352 l~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG~ 389 (416)
|.+ +.++|.+++++|||.
T Consensus 210 l~~--------------------v~~~Y~ev~~rl~g~ 227 (230)
T 1kut_A 210 LGD--------------------PLKKYREVLELCRSL 227 (230)
T ss_dssp GGC--------------------TTHHHHHHHHHHHHH
T ss_pred HHH--------------------HHHHHHHHHHHHhcc
Confidence 873 238899999999983
No 7
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Probab=100.00 E-value=4.5e-77 Score=576.41 Aligned_cols=229 Identities=23% Similarity=0.331 Sum_probs=214.0
Q ss_pred CCCCcccccccceeeecCC--eEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCcccccCCCCCeEEE
Q 014878 111 PGLKSKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTIA 186 (416)
Q Consensus 111 ~~l~~iyeGKvKdVY~~~d--~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIptHfV~~~~~~~~iv 186 (416)
...+++|+||||+||+++| .+||+||||+||||++++ .|||||++||+||+|||++|+ .|||||||+.+++++|+|
T Consensus 23 ~~~~~lyeGKvK~vY~~~d~~~ll~~~kDriSAfD~~~~~~IpgKG~~ln~iS~~~F~~L~~~GIptHfi~~~~~r~~lv 102 (263)
T 3kre_A 23 ENKEKIYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKKLIDKGIKTHFISLLNQREQLV 102 (263)
T ss_dssp ---CEEEECSSEEEEECSSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEECSSSEEEE
T ss_pred ccCcccccccceEEEECCCCCEEEEEEeCCCcCccccccCCcCcHhHHHHHHHHHHHHHHHhCCCCceeecccCCCeEEE
Confidence 3467899999999999975 799999999999999976 899999999999999999997 789999999999999999
Q ss_pred eccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC-CCCCCCHHHHHHcCCC
Q 014878 187 KKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLM 265 (416)
Q Consensus 187 kk~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~-hD~~Is~e~~~~lglv 265 (416)
|+|+|||||||||||+||| +|++| |+++|++||+|||||+||+|+ |||+||+++++++|++
T Consensus 103 kk~~~iPlEvVvR~~aaGS----~~kr~--------------Gl~eg~~L~~Pive~~~K~d~~hDp~Is~~~~~~lg~~ 164 (263)
T 3kre_A 103 KKITIIPIEVVIRNLAAGN----FSKRF--------------QIADGTPFKSPIIEFYYKNDELSDPMVSEGHILSFQWL 164 (263)
T ss_dssp ECEEECSEEEEEEEECCHH----HHHHH--------------TCCTTCEEEEEEEEEEECCTTTTCCEECHHHHHHTTSS
T ss_pred EEcccccEEEEEeeeecch----hhhhc--------------CCcccccCCCCeEEEEecCcccCCCCCCHHHHHHhCCC
Confidence 9999999999999999999 58887 356789999999999999995 9999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCC---cEEEEeeecCCCCcceeeccchhhhhcCCCCCCC
Q 014878 266 TEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDD---SILLIDEVHTPDSSRYWIAHSYEERFQSGLEPEN 342 (416)
Q Consensus 266 ~~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~G---eIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s 342 (416)
|++++++|+++|++||++++++|+++||+|||||||||++.+| +|+|+||| |||||||||+++|+ +
T Consensus 165 ~~ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~d~~G~~~~ivL~DEI-tPDs~R~Wd~~~~~----------~ 233 (263)
T 3kre_A 165 TNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEFGKLHNDEQSDLFLADEI-SPDTCRLWDISTNK----------R 233 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEEETTCTTCCCEECSCC-STTTEEEEETTTCC----------B
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEeeEeCCCCcceEEEEEee-CCCcccceECCCCC----------c
Confidence 9999999999999999999999999999999999999999889 99999999 99999999999874 8
Q ss_pred CcHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q 014878 343 VDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITK 388 (416)
Q Consensus 343 ~DKq~~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG 388 (416)
||||+||+||. .+.+.|.++++||..
T Consensus 234 lDKd~fR~~lg--------------------~v~~~Y~ev~~rl~~ 259 (263)
T 3kre_A 234 LDKDRYRLNLG--------------------NVIEGYREVAHKLNA 259 (263)
T ss_dssp CSTHHHHTTCS--------------------CHHHHHHHHHHHHTC
T ss_pred cCHHHHHhcch--------------------hHHHHHHHHHHHhcc
Confidence 99999999875 367899999999965
No 8
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A*
Probab=100.00 E-value=1.8e-76 Score=566.92 Aligned_cols=227 Identities=27% Similarity=0.384 Sum_probs=213.2
Q ss_pred CCCCcccccccceeeecCC-eEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCcccccCCCCCeEEEe
Q 014878 111 PGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTIAK 187 (416)
Q Consensus 111 ~~l~~iyeGKvKdVY~~~d-~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIptHfV~~~~~~~~ivk 187 (416)
..++++|+||||+||+++| .++|+||||+||||++++ +|||||++||+||+|||++|+ +|||||||+.+++++|+||
T Consensus 9 ~~~~~lyeGK~K~vY~~~d~~ll~~~kDrisAfd~~~~~~I~gKG~~~n~iS~~~F~~L~~~giptH~i~~~~~~~~lvk 88 (242)
T 2z02_A 9 LKKQPLYSGKAKSIYEIDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEALEENGVKTHYIKYIEPRYMIAK 88 (242)
T ss_dssp TTSCCSEECSSEEEEECSSSEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEEETTTEEEEE
T ss_pred hccCeeecccCeEEEEcCCCEEEEEEeCCCcccccccCCCCCchHHHHHHHHHHHHHHHHhCCCCceEEeEeCCCEEEEE
Confidence 5678999999999999985 899999999999999986 899999999999999999997 9999999999999999999
Q ss_pred ccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC-CCCCCCHHHHHHcCCCC
Q 014878 188 KCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMT 266 (416)
Q Consensus 188 k~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~-hD~~Is~e~~~~lglv~ 266 (416)
+|+|||||||||||+||| +|++| | +++|++||+|||||+||+|+ |||+||++++.++|++|
T Consensus 89 k~~~iPlEvVvR~~aaGS----~~kry--G------------l~eg~~L~~Pi~e~~~K~d~~~Dp~Is~~~~~~~~~~~ 150 (242)
T 2z02_A 89 KVEIIPIEVIVRNIAAGS----LCRRY--P------------FEEGKELPFPIVQFDYKNDEYGDPMLNEDIAVALGLAT 150 (242)
T ss_dssp CEEECSEEEEEEEECCTH----HHHHS--S------------CCTTCEEEEEEEEEEECCGGGTCCBCCHHHHHHTTSSC
T ss_pred ECccceEEEEEeeeeccc----cHHhc--C------------CccCcCCCCCEEEEEecCCcCCCCccCHHHHHHhccCC
Confidence 999999999999999999 58887 2 56779999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcCCCCCCCCcHH
Q 014878 267 EAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKE 346 (416)
Q Consensus 267 ~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq 346 (416)
++++++|+++|++||++++++|+++||+|||||||||++.+|+|+|+||| |||||||||+++. ++||||
T Consensus 151 ~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~~~~G~ivL~DEI-tPDs~R~W~~~~~----------~~~DK~ 219 (242)
T 2z02_A 151 REELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDREGNLLVADEI-SPDTMRLWDKETR----------DVLDKD 219 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEEETTCCEEECSCC-STTTEEEEETTTC----------CBCSTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEcCCCCEEEEEee-cCCccccccCCCC----------CccCHH
Confidence 99999999999999999999999999999999999999989999999999 9999999999873 689999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 014878 347 FLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAI 386 (416)
Q Consensus 347 ~~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~i 386 (416)
+||+|+. .+.+.|.++++|+
T Consensus 220 ~~R~~lg--------------------~v~~~Y~ev~~rl 239 (242)
T 2z02_A 220 VFRKDLG--------------------DVIAKYRIVAERL 239 (242)
T ss_dssp HHHTTCS--------------------CHHHHHHHHHHHT
T ss_pred HHHhhch--------------------hHHHHHHHHHHHh
Confidence 9999975 2347799999987
No 9
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} SCOP: d.143.1.0
Probab=100.00 E-value=6.3e-76 Score=562.03 Aligned_cols=225 Identities=24% Similarity=0.358 Sum_probs=211.5
Q ss_pred CCcccccccceeeecCC--eEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCcccccCCCCCeEEEec
Q 014878 113 LKSKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTIAKK 188 (416)
Q Consensus 113 l~~iyeGKvKdVY~~~d--~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIptHfV~~~~~~~~ivkk 188 (416)
.+++|+||||+||+++| .++++||||+||||++++ +|||||++||+||+|||++|+ +|||||||+.+++++|+||+
T Consensus 8 ~~~lyeGK~K~vY~~~d~~~ll~~~kDriSAfD~~~~~~I~gKG~v~~~iS~~~F~~L~~~gIptH~i~~~~~~~~lvkk 87 (238)
T 3nua_A 8 LEMLYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEMLNKEGIKTHFVEKLNDRDQLCKK 87 (238)
T ss_dssp EEEEEECSSEEEEEESSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEECSSSEEEEEC
T ss_pred cCccccccceEEEEcCCCCEEEEEEeCCCcCcccccCCCcCcHhHHHHHHHHHHHHHHHHCCCCCceecccCCCeEEEEE
Confidence 46899999999999875 689999999999999976 899999999999999999995 99999999999999999999
Q ss_pred cceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCC-CCCCCCCHHHHHHcCCCCH
Q 014878 189 CSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE-DHDVPVTPDEIVKLGLMTE 267 (416)
Q Consensus 189 ~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d-~hD~~Is~e~~~~lglv~~ 267 (416)
|+|||||||||||+||| +|++| | +++|++||+|||||+||+| .|||+||++++.++|++|+
T Consensus 88 ~~~iPlEvVvR~~a~GS----~~kry--G------------l~eg~~L~~Pi~e~~~K~d~~~Dp~i~~~~~~~~g~~~~ 149 (238)
T 3nua_A 88 VEIVPLEVIVRNVAAGS----MAKRL--G------------LEEGYELKTTVFELSYKDDSLGDPLINDYHAVGIGATTF 149 (238)
T ss_dssp CEECSEEEEEEEEECHH----HHHHH--T------------CCTTEEEEEEEEEEEECCGGGTCCEECHHHHHHTTSCCH
T ss_pred eeeeeEEEEEeeeeccc----chhhc--C------------CcccccCCCCeEEEeecCCCCCCCCCCHHHHHHcCCCCH
Confidence 99999999999999999 58888 3 5677999999999999998 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceeeccchhhhhcCCCCCCCCcHHH
Q 014878 268 AEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEF 347 (416)
Q Consensus 268 ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~~~s~DKq~ 347 (416)
+++++|+++|++||++++++|+++||+|||||||||++ +|+|+|+||| |||||||||+++. ++||||+
T Consensus 150 ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~~-~g~ivL~DEi-tPDs~R~W~~~~~----------~~~DKd~ 217 (238)
T 3nua_A 150 EELNKIYEITAKVNEILKEAFKKQNINLIDFKLEFGRY-NGEILLADEI-SPDTCRFWDATTG----------EKMDKDR 217 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEE-TTEEEEESCC-STTTEEEEETTTC----------CBCSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEeEEE-CCEEEEEEee-CCCcccccCCCCC----------cccChHH
Confidence 99999999999999999999999999999999999999 9999999999 9999999998753 6999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Q 014878 348 LRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAIT 387 (416)
Q Consensus 348 ~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iT 387 (416)
||+||. .+.+.|.++++||.
T Consensus 218 ~R~~lg--------------------~v~~~Y~ev~~rl~ 237 (238)
T 3nua_A 218 FRRDMG--------------------NVINGYREVLNRLR 237 (238)
T ss_dssp HHTTCS--------------------CHHHHHHHHHHHHT
T ss_pred Hhhccc--------------------hHHHHHHHHHHHhh
Confidence 998875 36789999999985
No 10
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-71 Score=563.70 Aligned_cols=236 Identities=21% Similarity=0.256 Sum_probs=185.4
Q ss_pred CCcccccccceeeecC---CeEEEEEcCCCCccccccC-CCCchhHHHHHHHHHHHHhccC-CCCcccccCCCCCeEEEe
Q 014878 113 LKSKTRGKVRDIYDGG---DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPDKNVTIAK 187 (416)
Q Consensus 113 l~~iyeGKvKdVY~~~---d~ll~v~kDriSAFD~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIptHfV~~~~~~~~ivk 187 (416)
.+++|+||||+||+++ +.++|+||||+||||++++ .|||||++||+||+|||++|++ |||||||+.+++++|+||
T Consensus 10 ~~~lyeGKvK~vY~~~d~~~~ll~~~kDriSAfD~~~~~~IpgKG~vln~iS~~~F~~L~~~giptH~i~~~~~r~~lvk 89 (425)
T 2h31_A 10 GKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQLLQEAGIKTAFTRKCGETAFIAP 89 (425)
T ss_dssp CCCCCBCSSCEEECCTTSCSSCEEEEC---------------CCHHHHHHHHHHHHHHHHHHTCCBSCCEECSSSEEEEC
T ss_pred CCccccCCCeEEeccCCCCCEEEEEEeCCCCCCCcccCCCcCcccHHHHHHHHHHHHHHHhCCCCceEeeccCCCeEEEE
Confidence 3689999999999964 3799999999999999986 8999999999999999999985 999999999999999999
Q ss_pred ccceeeeEEEEeeeeecCCccchhHhhhcCccccccccCCCCcccCCCCCCceeeeccCCCC-CCCCCCHHHHHHcCCC-
Q 014878 188 KCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLM- 265 (416)
Q Consensus 188 k~~mIPlEvIVRnyatGS~~krlw~~Y~~G~~~~~G~~lp~Gl~e~~kL~~PI~epstK~d~-hD~~Is~e~~~~lglv- 265 (416)
||+|||||||||||+||| +|++|. |+++|++|++|||||+||+|+ |||+||++++.++|++
T Consensus 90 k~~~iPlEvVvR~~atGS----~~kry~-------------gl~eg~~l~~Pi~e~~~K~d~~hDp~Is~e~~~~~g~~~ 152 (425)
T 2h31_A 90 QCEMIPIEWVCRRIATGS----FLKRNP-------------GVKEGYKFYPPKVELFFKDDANNDPQWSEEQLIAAKFCF 152 (425)
T ss_dssp CEEECSCEEEEESBCCHH----HHHHST-------------TCCTTCBCSSCCEEEESCCCSSCCCCBCHHHHHTTTCEE
T ss_pred EccEeeEEEEEEeeeech----hHHhcc-------------CCCCCCcCCCCeeeeEeecccCCCCCCCHHHHHHcCccc
Confidence 999999999999999999 588882 355779999999999999995 9999999999999998
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeEEEEee-cCCcEEEEeeecCCCCcceeeccchhhhhcCCCC
Q 014878 266 -----TEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKS-SDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLE 339 (416)
Q Consensus 266 -----~~ee~~~I~~~al~I~~~l~~~~~~~GliLVD~K~EFG~d-~~GeIvLiDEI~TPDSsRlWd~~tye~~~~~G~~ 339 (416)
|++++++|+++|++||++++++|+++||+|||||||||++ .+|+|+|+||| |||||||||++++.
T Consensus 153 ~~~~i~~ee~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~~~~~G~ivLaDei-tPDs~R~W~~~~~~-------- 223 (425)
T 2h31_A 153 AGLLIGQTEVDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVI-DNDSWRLWPSGDRS-------- 223 (425)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEECEEEETTTCCEEECSCC-CTTSEEEECCC-----------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEecCCCeEEEEEee-CCCccccccCCCCC--------
Confidence 9999999999999999999999999999999999999999 69999999999 99999999998753
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q 014878 340 PENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWRYIFLYEAITK 388 (416)
Q Consensus 340 ~~s~DKq~~R~wl~~~~~~~~~~~~P~LP~evv~~~s~rY~~~~e~iTG 388 (416)
++||||+||+|+.-.-. .| ..+.+.|.++.++++.
T Consensus 224 -~~~DK~~~R~~~~~~~~--------~l-----~~v~~~Y~eVa~rL~i 258 (425)
T 2h31_A 224 -QQKDKQSYRDLKEVTPE--------GL-----QMVKKNFEWVAERVEL 258 (425)
T ss_dssp ----------------CC--------SS-----SCCCCCHHHHHTTGGG
T ss_pred -CcccHHHHHhccccchh--------hH-----HHHHHHHHHHHHHhhc
Confidence 69999999999874311 11 1223788888888865
No 11
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=24.97 E-value=50 Score=30.44 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHCCCeEEeeeEEEEeecCCcEEEEeeecCCCCcceee
Q 014878 267 EAEFDEASRKALRLFEYGQRVA-SEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWI 326 (416)
Q Consensus 267 ~ee~~~I~~~al~I~~~l~~~~-~~~GliLVD~K~EFG~d~~GeIvLiDEI~TPDSsRlWd 326 (416)
++..+++++++.++.+.+.+.. .-.|+.-+|+++ +.+|+++|++ | +.|++-
T Consensus 239 ~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~----~~~g~~~viE-i----N~R~g~ 290 (334)
T 2r85_A 239 ESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVF----TPDLEFVVFE-I----SARIVA 290 (334)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEE----CTTSCEEEEE-E----ECSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEE----CCCCCEEEEE-E----eCCcCC
Confidence 3445667888888888776433 456777777654 6678988876 7 678764
No 12
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=20.99 E-value=21 Score=34.25 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=11.5
Q ss_pred CCcccccccccchhhHHhcccchhhhHHhHHHhh
Q 014878 64 QNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSL 97 (416)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (416)
+.++||||.|.+--+...+..-++-+...+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~s~~e~~~i~~~l~~~~ 36 (305)
T 2nn6_E 3 SSHHHHHHSQDPMASVTLSEAEKVYIVHGVQEDL 36 (305)
T ss_dssp ----------------CCCHHHHHHHHHHHHTTC
T ss_pred ccccccccccCCccccccChhHHHHHHHHHhcCC
Confidence 4456677777666666666666666666665554
Done!