RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014878
(416 letters)
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 304
Score = 199 bits (506), Expect = 1e-61
Identities = 95/316 (30%), Positives = 149/316 (47%), Gaps = 39/316 (12%)
Query: 101 LSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNE 158
+++T L +P + RGKVRDIY+ L+ V TDR SA+D I+ SIP KG +L +
Sbjct: 2 ITKTELDGILPLV---ARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTK 58
Query: 159 TSLWWFDQTRHITPNAVISSP----------------------DKNVTIAKKCSVIPVEF 196
S +WF + N ++ + + K +IP+E
Sbjct: 59 LSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEV 118
Query: 197 VVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTP 256
+VRG++TGS G P GL ++Q+ P I TP+TKAE +
Sbjct: 119 IVRGYITGSAWKEYV-----KTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENI 173
Query: 257 DEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGK-SSDDSILLIDE 315
L+ E + A++L+ + A E G+I+ DTK+EFG + I+L+DE
Sbjct: 174 SPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDE 233
Query: 316 VHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICEL 375
V TPDSSR+W SY+ G ++ DK+FLR W + + P++++
Sbjct: 234 VLTPDSSRFWNGASYKV----GESQDSYDKQFLRDWLTANKLNGVNG--VKMPQDIVDRT 287
Query: 376 AWRYIFLYEAITKSRF 391
+YI YE +T S++
Sbjct: 288 RAKYIEAYETLTGSKW 303
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId:
2336]}
Length = 224
Score = 150 bits (379), Expect = 8e-44
Identities = 51/245 (20%), Positives = 84/245 (34%), Gaps = 33/245 (13%)
Query: 122 RDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTR-HITPNAVISSP 179
+ + GDY +L D +A D + + KG + ET+ ++
Sbjct: 2 KIVKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLVEYI 61
Query: 180 DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPAN 239
+ P+E VVR S Y L + +K+ +
Sbjct: 62 PPRTLKVIPLKMFPLEVVVRLKK----AGSFVRRYGGAEGEDLPVPLVEFFIKDDER--- 114
Query: 240 ILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTK 299
HD V D + LG+ T+ + ++ A+++ + L D K
Sbjct: 115 ----------HDPMVCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFELWDIK 164
Query: 300 YEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPY 359
YEFG D +++L DE+ +PD+ R E DK+ R D Y
Sbjct: 165 YEFGLDKDGNVVLGDEI-SPDTFRLRKK------------GEIFDKDVYRRDLGDPLKKY 211
Query: 360 EDEVL 364
EVL
Sbjct: 212 R-EVL 215
>d1lnia_ d.1.1.2 (A:) RNase Sa {Streptomyces aureofaciens [TaxId:
1894]}
Length = 96
Score = 30.8 bits (70), Expect = 0.063
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 109 TVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRI 145
TV ++TRG R I T D + F I
Sbjct: 56 TVITPGARTRGTRRIITGEATQEDYYTGDHYATFSLI 92
>d1mgra_ d.1.1.2 (A:) Cytotoxic RNase Sa3 {Streptomyces aureofaciens
[TaxId: 1894]}
Length = 97
Score = 30.1 bits (68), Expect = 0.13
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 78 DAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTD 137
D V+ NR+ L G E TV S TRG R I T D
Sbjct: 34 DGVVFQNREGLLPAHSTG----YYHE----YTVITPGSPTRGARRIITGQQWQEDYYTAD 85
Query: 138 RQSAFDRI 145
++F R+
Sbjct: 86 HYASFRRV 93
>d1pyla_ d.1.1.2 (A:) Ribonuclease Sa2 {Streptomyces aureofaciens
[TaxId: 1894]}
Length = 96
Score = 27.4 bits (61), Expect = 1.0
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 109 TVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRI 145
TV S RG R + GG + D + F I
Sbjct: 57 TVVTPGSNDRGTRRVVT-GGYGEQYWSPDHYATFQEI 92
>g1qmo.1 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolichos
lablab), Fril [TaxId: 35936]}
Length = 230
Score = 28.5 bits (63), Expect = 1.2
Identities = 20/154 (12%), Positives = 40/154 (25%), Gaps = 3/154 (1%)
Query: 13 KTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHHQ 72
PL + SA SF + + + P +S + ++ + +
Sbjct: 53 SAPLRLWEDSAVLTSFDTIINFEISTPYTSRIADGLAFFIAPPDSVISYHGGFLGLFPNA 112
Query: 73 QHLSLDAVISSNRKAELLGDIKGSLS--NRLSETNLHLTVPGLKSKTRGKVRDIYDGGDY 130
+ AV GD + S + ++ Y+
Sbjct: 113 NSNVV-AVEFDTYLNPDYGDPNYIHIGIDVNSIRSKVTAKWDWQNGKIATAHISYNSVSK 171
Query: 131 LVLVTTDRQSAFDRILASIPFKGQVLNETSLWWF 164
+ VT+ + L+ VL E
Sbjct: 172 RLSVTSYYAGSKPATLSYDIELHTVLPEWVRVGL 205
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 28.4 bits (63), Expect = 2.0
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 13/56 (23%)
Query: 77 LDAVISSNRKAELLGDIKGSL-----SNRLSETNLHLTVPGLKSKTRGKVRDIYDG 127
++ ++ + + + LS L + G + D Y G
Sbjct: 539 VEETFTNKDFIKSFMKFESKIRRIGMIKSLSLVALKIMSAG--------IPDFYQG 586
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 25.8 bits (57), Expect = 3.0
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 119 GKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSL 161
G + + + G V+V + D +P+ GQ + L
Sbjct: 20 GVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDL 62
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 26.3 bits (58), Expect = 7.3
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 329 SYEERFQSGLEPEN------VDKEFLRLWFKDHCNPYEDEVLPDAPEELICELA 376
+ GL N + KEF +D D+V D P E+ E+
Sbjct: 301 KEDALNLKGLGHINMMELFSISKEFWDKEVEDIEKYLVDQVNADLPCEIEREIL 354
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 26.3 bits (56), Expect = 7.5
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 251 DVPVTPDEIVKL--GLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDD 308
D V +E+ KL ++ + + +KA+ L + + G S
Sbjct: 414 DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGG------------CSYM 461
Query: 309 SI-LLIDEV 316
++ +I +V
Sbjct: 462 NLNKVIKDV 470
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
enterica [TaxId: 28901]}
Length = 320
Score = 26.3 bits (57), Expect = 7.8
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 144 RILASIPFK--------GQVLNETSL------WWFDQTRHITPNAVISSPDKNVTIAKKC 189
+++A F G V + L W +D+ I+ N I + C
Sbjct: 26 QVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEIT---GNARITQPC 82
Query: 190 SV 191
++
Sbjct: 83 TL 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,513,776
Number of extensions: 69948
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 13
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)