BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014879
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378
+ NR +A++S++RK+ I+ LE+KV+TL+ + + L++ +L+ A L
Sbjct: 7 MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378
+ NR +A++S++RK+ I+ LE+KV+TL+ + + L++ +L+ A L
Sbjct: 8 MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 56
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378
+ NR +A++S++RK+ I+ LE+KV+TL+ + + L++ +L+ A L
Sbjct: 8 MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 56
>pdb|1S9K|E Chain E, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2
Arre1 Site
Length = 52
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378
+ NR +A++ ++RK+ I+ LE+KV+TL+ + + L++ +L+ A L
Sbjct: 4 MRNRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 52
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 142 LVKQES-EWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMD 200
L KQ + +++ V +D R V K ++DD++N + +EN D LNS+ D+D
Sbjct: 86 LHKQTTKQFSKVVEDLYRYVNA-ATGKPAPMISDDVYN--IVMENKDKLNSAIVYDRDFQ 142
Query: 201 SRASGSKT 208
G KT
Sbjct: 143 YSYFGFKT 150
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 142 LVKQES-EWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMD 200
L KQ + +++ V +D R V K ++DD++N + +EN D LNS+ D+D
Sbjct: 86 LHKQTTKQFSKVVEDLYRYVNA-ATGKPAPMISDDVYN--IVMENKDKLNSAIVYDRDFQ 142
Query: 201 SRASGSKT 208
G KT
Sbjct: 143 YSYFGFKT 150
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 142 LVKQES-EWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMD 200
L KQ + +++ V +D R V K ++DD++N + +EN D LNS+ D+D
Sbjct: 86 LHKQTTKQFSKVVEDLYRYVNA-ATGKPAPMISDDVYN--IVMENKDKLNSAIVYDRDFQ 142
Query: 201 SRASGSKT 208
G KT
Sbjct: 143 YSYFGFKT 150
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378
KR K + NR +A+RS++++ ++ LE+K + L + L ++VT+L+ + A L
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 104 RGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEG- 162
RG + DIPL + ++ + +L I S G + LVK E + N + EG
Sbjct: 18 RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 163 -------MGERKSEEDVADDLFNEYMNLENIDTLN 190
+GE K +E +++ +F + L + TLN
Sbjct: 78 SHIQELQLGENKIKE-ISNKMF---LGLHQLKTLN 108
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 151 NVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLN 190
N+ + + NV G+G E V + L +EYM+L + T+N
Sbjct: 217 NLLDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTIN 256
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 151 NVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLN 190
N+ + + NV G+G E V + L +EYM+L + T+N
Sbjct: 217 NLLDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLSTIN 256
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQR 373
SDP KR N ++A RS+ RK++ + +LE KV+ L ++ L +V L++
Sbjct: 6 SDPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 57
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQR 373
SDP KR N ++A RS+ RK++ + +LE KV+ L ++ L +V L++
Sbjct: 7 SDPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.126 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,284,952
Number of Sequences: 62578
Number of extensions: 393340
Number of successful extensions: 726
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 21
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)