Query 014879
Match_columns 416
No_of_seqs 185 out of 791
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 1E-12 2.2E-17 101.9 9.3 63 321-383 2-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.3E-11 2.8E-16 95.7 9.4 61 322-382 3-63 (64)
3 KOG4005 Transcription factor X 99.2 1.8E-10 3.9E-15 111.5 11.9 82 313-395 59-140 (292)
4 PF07716 bZIP_2: Basic region 99.1 5.6E-10 1.2E-14 84.4 8.4 53 321-374 2-54 (54)
5 KOG4343 bZIP transcription fac 99.1 1.8E-10 3.9E-15 120.9 7.4 63 324-386 281-343 (655)
6 KOG3584 cAMP response element 98.9 1.5E-09 3.2E-14 107.5 6.7 53 323-375 290-342 (348)
7 KOG0709 CREB/ATF family transc 98.9 1.6E-09 3.5E-14 112.3 6.5 64 322-385 249-312 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.2 1.8E-08 3.8E-13 83.7 -6.9 79 302-382 10-88 (92)
9 KOG0837 Transcriptional activa 97.8 9.8E-05 2.1E-09 72.9 8.5 48 328-375 210-257 (279)
10 KOG4571 Activating transcripti 97.4 0.001 2.2E-08 66.5 10.4 58 320-377 222-280 (294)
11 KOG3863 bZIP transcription fac 97.3 0.00053 1.2E-08 74.1 7.4 86 303-395 469-554 (604)
12 KOG4196 bZIP transcription fac 97.2 0.0032 6.8E-08 56.9 9.8 84 302-394 33-116 (135)
13 KOG3119 Basic region leucine z 96.9 0.0049 1.1E-07 60.5 9.6 61 321-381 191-251 (269)
14 PF06156 DUF972: Protein of un 96.5 0.014 3E-07 50.8 8.0 50 345-394 8-57 (107)
15 PF11559 ADIP: Afadin- and alp 96.4 0.071 1.5E-06 47.4 12.5 68 346-413 53-120 (151)
16 PRK13169 DNA replication intia 96.4 0.016 3.5E-07 50.8 7.9 50 345-394 8-57 (110)
17 PF06005 DUF904: Protein of un 96.3 0.1 2.2E-06 42.6 11.5 51 345-395 4-54 (72)
18 PF14197 Cep57_CLD_2: Centroso 95.9 0.11 2.5E-06 42.0 10.2 65 349-414 2-67 (69)
19 PRK10884 SH3 domain-containing 95.9 0.095 2.1E-06 50.1 11.3 13 357-369 137-149 (206)
20 PF08614 ATG16: Autophagy prot 95.6 0.27 5.8E-06 45.8 12.6 69 321-389 113-181 (194)
21 PF10473 CENP-F_leu_zip: Leuci 95.4 0.79 1.7E-05 41.9 14.4 78 318-395 25-102 (140)
22 PRK09039 hypothetical protein; 95.2 0.53 1.1E-05 47.9 14.2 66 350-415 121-194 (343)
23 PF06005 DUF904: Protein of un 94.8 0.51 1.1E-05 38.6 10.3 44 349-392 15-58 (72)
24 KOG4005 Transcription factor X 94.5 0.85 1.8E-05 45.5 13.1 89 312-400 61-152 (292)
25 PF14197 Cep57_CLD_2: Centroso 94.5 0.35 7.5E-06 39.2 8.7 50 346-395 13-62 (69)
26 TIGR02449 conserved hypothetic 94.5 0.28 6E-06 39.7 8.0 46 347-392 9-54 (65)
27 TIGR02894 DNA_bind_RsfA transc 94.3 0.3 6.5E-06 45.7 9.1 53 344-396 86-141 (161)
28 PRK11637 AmiB activator; Provi 94.3 1.5 3.1E-05 45.3 14.9 70 326-395 172-241 (428)
29 PF14662 CCDC155: Coiled-coil 94.2 0.93 2E-05 43.6 12.4 69 347-415 97-186 (193)
30 TIGR02449 conserved hypothetic 94.2 0.6 1.3E-05 37.8 9.5 44 347-390 2-45 (65)
31 PF13747 DUF4164: Domain of un 94.2 1.3 2.9E-05 37.3 11.9 69 324-392 11-79 (89)
32 PF04102 SlyX: SlyX; InterPro 94.1 0.24 5.3E-06 39.6 7.1 52 345-396 4-55 (69)
33 PRK15422 septal ring assembly 94.0 0.72 1.6E-05 38.8 9.8 41 345-385 4-44 (79)
34 PRK10884 SH3 domain-containing 94.0 1.2 2.5E-05 42.8 12.6 53 345-397 118-170 (206)
35 COG4942 Membrane-bound metallo 93.9 1.2 2.6E-05 47.1 13.5 73 324-396 38-110 (420)
36 PRK00295 hypothetical protein; 93.8 0.46 1E-05 38.2 8.0 48 346-393 6-53 (68)
37 PF15070 GOLGA2L5: Putative go 93.7 1.5 3.2E-05 48.4 14.4 70 326-395 103-196 (617)
38 PF10186 Atg14: UV radiation r 93.6 2.7 5.9E-05 39.9 14.5 53 338-390 56-108 (302)
39 PF04111 APG6: Autophagy prote 93.6 2.5 5.3E-05 42.7 14.7 80 336-415 55-134 (314)
40 COG1579 Zn-ribbon protein, pos 93.6 3.5 7.5E-05 40.8 15.3 48 347-394 91-138 (239)
41 PF12718 Tropomyosin_1: Tropom 93.6 0.99 2.1E-05 40.8 10.8 12 384-395 77-88 (143)
42 PRK00736 hypothetical protein; 93.5 0.48 1E-05 38.1 7.8 49 345-393 5-53 (68)
43 PRK02793 phi X174 lysis protei 93.5 0.46 9.9E-06 38.6 7.7 50 345-394 8-57 (72)
44 PF05266 DUF724: Protein of un 93.5 2.7 5.8E-05 40.0 14.0 59 323-381 88-146 (190)
45 COG4467 Regulator of replicati 93.5 0.31 6.7E-06 43.2 7.1 52 345-396 8-61 (114)
46 TIGR03752 conj_TIGR03752 integ 93.5 0.37 8.1E-06 51.5 9.1 45 349-393 70-122 (472)
47 KOG0239 Kinesin (KAR3 subfamil 93.4 1.1 2.4E-05 49.7 13.0 71 345-415 241-314 (670)
48 COG3074 Uncharacterized protei 93.4 0.63 1.4E-05 38.7 8.4 45 347-391 20-64 (79)
49 PRK04325 hypothetical protein; 93.4 0.48 1E-05 38.7 7.7 48 346-393 10-57 (74)
50 PRK11637 AmiB activator; Provi 93.3 2.9 6.2E-05 43.2 15.0 44 346-389 76-119 (428)
51 COG2433 Uncharacterized conser 93.3 0.66 1.4E-05 51.1 10.7 46 345-390 422-467 (652)
52 PRK02119 hypothetical protein; 93.2 0.53 1.1E-05 38.4 7.7 49 345-393 9-57 (73)
53 PRK04406 hypothetical protein; 93.1 0.54 1.2E-05 38.6 7.6 49 345-393 11-59 (75)
54 PF14662 CCDC155: Coiled-coil 93.0 0.84 1.8E-05 43.9 9.9 54 346-399 9-62 (193)
55 PF10224 DUF2205: Predicted co 93.0 0.66 1.4E-05 38.9 8.1 49 348-396 19-67 (80)
56 PF09726 Macoilin: Transmembra 93.0 2.4 5.1E-05 47.4 14.7 44 329-372 471-515 (697)
57 PF10473 CENP-F_leu_zip: Leuci 93.0 5.2 0.00011 36.7 14.4 56 357-412 57-112 (140)
58 PF11932 DUF3450: Protein of u 92.9 4.8 0.0001 38.8 15.0 44 350-393 54-97 (251)
59 KOG0995 Centromere-associated 92.8 1.6 3.4E-05 47.9 12.6 51 341-391 276-326 (581)
60 KOG0243 Kinesin-like protein [ 92.7 1.8 3.9E-05 50.2 13.6 70 329-398 415-494 (1041)
61 PRK00846 hypothetical protein; 92.5 0.8 1.7E-05 38.2 7.8 50 344-393 12-61 (77)
62 KOG0250 DNA repair protein RAD 92.5 3.1 6.8E-05 48.5 15.0 60 335-394 369-429 (1074)
63 PF08614 ATG16: Autophagy prot 92.4 1.6 3.4E-05 40.7 10.7 66 348-413 126-192 (194)
64 COG3074 Uncharacterized protei 92.4 2.9 6.3E-05 34.9 10.9 50 345-394 4-53 (79)
65 PF02183 HALZ: Homeobox associ 92.3 0.43 9.4E-06 35.8 5.6 39 356-394 2-40 (45)
66 PF09726 Macoilin: Transmembra 92.3 2.3 5.1E-05 47.4 13.5 42 347-388 540-581 (697)
67 PRK13729 conjugal transfer pil 92.3 0.59 1.3E-05 50.1 8.6 47 346-392 77-123 (475)
68 PF07989 Microtub_assoc: Micro 92.2 2.2 4.9E-05 35.0 10.0 52 347-398 2-61 (75)
69 COG1579 Zn-ribbon protein, pos 92.1 7.3 0.00016 38.6 15.2 75 321-395 28-111 (239)
70 PF12711 Kinesin-relat_1: Kine 92.0 2.5 5.3E-05 36.1 10.3 58 356-415 21-84 (86)
71 PF10146 zf-C4H2: Zinc finger- 91.8 5.6 0.00012 39.0 14.0 77 338-414 25-101 (230)
72 PF05837 CENP-H: Centromere pr 91.8 1 2.2E-05 38.8 8.0 50 352-401 3-52 (106)
73 PF10805 DUF2730: Protein of u 91.8 1.8 3.8E-05 37.3 9.4 53 347-399 44-98 (106)
74 PF11932 DUF3450: Protein of u 91.7 7.4 0.00016 37.5 14.6 50 337-386 48-97 (251)
75 PF07200 Mod_r: Modifier of ru 91.5 7 0.00015 34.6 13.3 84 301-385 4-88 (150)
76 PF07888 CALCOCO1: Calcium bin 91.3 5.2 0.00011 43.8 14.4 48 329-376 155-202 (546)
77 PF05266 DUF724: Protein of un 91.2 3.5 7.5E-05 39.2 11.6 57 339-395 125-181 (190)
78 PF10481 CENP-F_N: Cenp-F N-te 91.0 3.9 8.5E-05 41.6 12.3 71 344-414 52-122 (307)
79 TIGR03752 conj_TIGR03752 integ 90.8 1.6 3.4E-05 47.0 9.9 38 357-394 64-101 (472)
80 PRK15422 septal ring assembly 90.8 2 4.3E-05 36.2 8.5 47 346-392 19-65 (79)
81 KOG1853 LIS1-interacting prote 90.8 6.2 0.00013 40.1 13.4 87 327-415 27-119 (333)
82 KOG0982 Centrosomal protein Nu 90.7 3.8 8.3E-05 43.9 12.5 65 344-408 296-364 (502)
83 PF04111 APG6: Autophagy prote 90.6 2.9 6.2E-05 42.3 11.1 51 345-395 43-93 (314)
84 PF02403 Seryl_tRNA_N: Seryl-t 90.5 9.2 0.0002 32.1 12.5 48 349-396 40-90 (108)
85 PF10211 Ax_dynein_light: Axon 90.5 6 0.00013 37.3 12.4 65 347-412 122-188 (189)
86 PRK04863 mukB cell division pr 90.2 8.6 0.00019 46.5 16.2 90 324-413 321-423 (1486)
87 PF10481 CENP-F_N: Cenp-F N-te 90.2 6.6 0.00014 40.0 13.1 89 327-415 21-116 (307)
88 KOG0288 WD40 repeat protein Ti 90.2 9.3 0.0002 40.9 14.6 52 324-375 27-78 (459)
89 PF13094 CENP-Q: CENP-Q, a CEN 90.1 3.3 7.1E-05 37.3 10.1 62 352-413 27-88 (160)
90 PF09304 Cortex-I_coil: Cortex 90.0 7.8 0.00017 34.4 11.8 68 329-398 21-88 (107)
91 KOG1414 Transcriptional activa 89.7 0.015 3.3E-07 59.8 -5.9 62 320-381 150-215 (395)
92 PF00038 Filament: Intermediat 89.6 12 0.00027 36.4 14.3 29 361-389 218-246 (312)
93 KOG4643 Uncharacterized coiled 89.6 6.4 0.00014 46.0 13.8 69 323-394 490-558 (1195)
94 PF04849 HAP1_N: HAP1 N-termin 89.5 2.9 6.3E-05 42.7 10.1 52 348-399 220-275 (306)
95 PF13851 GAS: Growth-arrest sp 89.5 20 0.00043 34.2 15.2 56 324-379 72-127 (201)
96 PF07888 CALCOCO1: Calcium bin 89.5 9.1 0.0002 42.0 14.4 51 346-396 186-236 (546)
97 PF11559 ADIP: Afadin- and alp 89.5 15 0.00032 32.7 14.8 57 329-385 50-106 (151)
98 PF08647 BRE1: BRE1 E3 ubiquit 89.4 12 0.00027 31.6 13.7 78 326-403 5-83 (96)
99 PF04880 NUDE_C: NUDE protein, 89.3 0.59 1.3E-05 43.8 4.8 52 347-402 2-53 (166)
100 PF10186 Atg14: UV radiation r 89.2 17 0.00036 34.6 14.5 36 340-375 65-100 (302)
101 PF00769 ERM: Ezrin/radixin/mo 89.2 21 0.00047 34.9 15.5 66 348-413 50-115 (246)
102 KOG1029 Endocytic adaptor prot 89.1 4.1 8.8E-05 46.6 11.6 13 42-54 115-127 (1118)
103 KOG0980 Actin-binding protein 89.0 9.6 0.00021 44.0 14.5 79 316-394 381-459 (980)
104 PF06156 DUF972: Protein of un 89.0 2.7 5.9E-05 36.7 8.3 46 349-394 5-50 (107)
105 PF08317 Spc7: Spc7 kinetochor 88.8 4.4 9.6E-05 40.7 10.9 49 344-392 208-256 (325)
106 PF06785 UPF0242: Uncharacteri 88.7 8.1 0.00017 40.5 12.7 51 339-389 121-171 (401)
107 KOG0976 Rho/Rac1-interacting s 88.6 5.3 0.00012 45.9 12.1 48 347-394 108-155 (1265)
108 COG2433 Uncharacterized conser 88.5 4.7 0.0001 44.7 11.4 72 345-416 436-510 (652)
109 PRK05431 seryl-tRNA synthetase 88.4 6.4 0.00014 41.2 12.1 46 350-395 40-88 (425)
110 KOG1962 B-cell receptor-associ 88.3 2.8 6.1E-05 41.0 8.7 37 353-389 173-209 (216)
111 PF15290 Syntaphilin: Golgi-lo 88.2 2.5 5.5E-05 43.0 8.6 29 347-375 77-105 (305)
112 KOG0977 Nuclear envelope prote 88.2 7.4 0.00016 42.7 12.6 62 334-395 130-191 (546)
113 PF08537 NBP1: Fungal Nap bind 88.2 6.3 0.00014 40.7 11.5 96 300-395 96-204 (323)
114 PF13851 GAS: Growth-arrest sp 88.1 12 0.00025 35.7 12.6 30 366-395 93-122 (201)
115 PF05911 DUF869: Plant protein 88.0 3.7 7.9E-05 46.5 10.6 48 369-416 137-205 (769)
116 PRK13169 DNA replication intia 87.8 3.4 7.4E-05 36.5 8.2 45 348-392 4-48 (110)
117 PF12777 MT: Microtubule-bindi 87.8 3.3 7.2E-05 41.9 9.3 66 347-412 230-295 (344)
118 PF12325 TMF_TATA_bd: TATA ele 87.7 7.1 0.00015 34.8 10.2 36 350-385 28-63 (120)
119 PF06428 Sec2p: GDP/GTP exchan 87.7 0.73 1.6E-05 39.9 3.9 69 345-415 8-79 (100)
120 COG2900 SlyX Uncharacterized p 87.5 3.2 7E-05 34.4 7.4 52 345-396 8-59 (72)
121 KOG1103 Predicted coiled-coil 87.4 2 4.3E-05 45.3 7.5 66 333-398 226-291 (561)
122 PF07106 TBPIP: Tat binding pr 86.9 3.2 6.9E-05 37.7 7.8 53 343-395 84-138 (169)
123 PF02403 Seryl_tRNA_N: Seryl-t 86.9 5.3 0.00011 33.5 8.6 84 331-414 9-101 (108)
124 PF02183 HALZ: Homeobox associ 86.9 2.6 5.6E-05 31.7 6.0 42 349-390 2-43 (45)
125 TIGR02977 phageshock_pspA phag 86.6 9.9 0.00021 36.2 11.3 59 344-402 98-156 (219)
126 COG4026 Uncharacterized protei 86.6 7.7 0.00017 38.8 10.7 42 352-393 149-190 (290)
127 KOG1853 LIS1-interacting prote 86.6 14 0.00031 37.6 12.6 71 344-414 90-170 (333)
128 PF09744 Jnk-SapK_ap_N: JNK_SA 86.6 13 0.00028 34.6 11.7 39 355-393 85-123 (158)
129 KOG1899 LAR transmembrane tyro 86.6 7.4 0.00016 43.7 11.6 84 328-413 128-217 (861)
130 PF12709 Kinetocho_Slk19: Cent 86.4 3.2 7E-05 35.5 7.0 43 343-385 40-82 (87)
131 PRK10698 phage shock protein P 86.2 14 0.00031 35.5 12.3 72 331-402 81-156 (222)
132 PF05667 DUF812: Protein of un 86.2 4.8 0.0001 44.3 10.1 58 343-400 326-383 (594)
133 KOG4571 Activating transcripti 86.2 6.1 0.00013 40.3 10.0 44 365-408 247-291 (294)
134 PF15619 Lebercilin: Ciliary p 85.7 18 0.00038 34.6 12.4 32 335-366 8-40 (194)
135 PF15294 Leu_zip: Leucine zipp 85.7 2.7 5.8E-05 42.5 7.2 45 350-394 130-174 (278)
136 PF00038 Filament: Intermediat 85.7 37 0.00081 33.1 15.4 29 345-373 223-251 (312)
137 PF09304 Cortex-I_coil: Cortex 85.6 26 0.00055 31.2 14.9 62 330-391 14-76 (107)
138 PF15035 Rootletin: Ciliary ro 85.5 6.2 0.00013 37.3 9.2 68 347-414 69-144 (182)
139 PF10805 DUF2730: Protein of u 85.5 12 0.00025 32.3 10.1 53 344-396 34-88 (106)
140 TIGR00219 mreC rod shape-deter 85.3 5.1 0.00011 39.9 9.0 37 353-389 67-107 (283)
141 TIGR00414 serS seryl-tRNA synt 85.3 11 0.00024 39.4 11.8 48 349-396 41-92 (418)
142 PRK10803 tol-pal system protei 84.9 5.9 0.00013 38.9 9.1 48 345-392 54-101 (263)
143 PRK13922 rod shape-determining 84.8 9.9 0.00021 36.9 10.5 11 377-387 97-107 (276)
144 KOG0250 DNA repair protein RAD 84.8 20 0.00042 42.3 14.3 59 346-404 366-426 (1074)
145 PRK13922 rod shape-determining 84.8 6.6 0.00014 38.1 9.3 9 380-388 76-84 (276)
146 cd07596 BAR_SNX The Bin/Amphip 84.7 29 0.00064 31.1 13.9 56 353-411 146-203 (218)
147 COG3883 Uncharacterized protei 84.6 14 0.0003 37.3 11.6 46 347-392 40-85 (265)
148 PF04849 HAP1_N: HAP1 N-termin 84.6 8 0.00017 39.7 10.1 44 364-407 218-261 (306)
149 TIGR00219 mreC rod shape-deter 84.5 4.1 9E-05 40.5 8.0 40 374-416 67-106 (283)
150 PF05103 DivIVA: DivIVA protei 84.4 0.55 1.2E-05 40.1 1.6 48 345-392 25-72 (131)
151 PF12761 End3: Actin cytoskele 84.4 16 0.00034 35.5 11.4 31 385-415 165-195 (195)
152 smart00338 BRLZ basic region l 84.2 4.2 9.1E-05 31.6 6.3 28 367-394 27-54 (65)
153 PF04156 IncA: IncA protein; 84.1 32 0.0007 31.3 13.0 14 357-370 135-148 (191)
154 KOG1414 Transcriptional activa 83.6 0.19 4.1E-06 51.9 -1.9 55 322-376 283-338 (395)
155 PF04012 PspA_IM30: PspA/IM30 83.6 16 0.00034 34.2 11.0 56 347-402 100-155 (221)
156 PF14661 HAUS6_N: HAUS augmin- 83.5 14 0.00031 35.8 11.0 46 337-382 160-208 (247)
157 KOG1962 B-cell receptor-associ 83.5 13 0.00029 36.4 10.7 44 350-393 149-192 (216)
158 PRK00888 ftsB cell division pr 83.5 4.3 9.3E-05 35.1 6.6 21 372-392 40-60 (105)
159 PF12711 Kinesin-relat_1: Kine 83.4 2.4 5.3E-05 36.1 5.0 19 368-386 46-64 (86)
160 PF05700 BCAS2: Breast carcino 83.2 5.6 0.00012 38.0 8.0 35 353-387 176-210 (221)
161 KOG0946 ER-Golgi vesicle-tethe 83.2 9.1 0.0002 44.0 10.6 62 329-390 655-716 (970)
162 KOG3119 Basic region leucine z 83.0 7.1 0.00015 38.7 8.8 59 345-403 194-253 (269)
163 PF08172 CASP_C: CASP C termin 82.6 5 0.00011 39.6 7.6 40 344-383 92-131 (248)
164 PRK00888 ftsB cell division pr 82.4 5.6 0.00012 34.4 6.9 32 342-373 31-62 (105)
165 PF15030 DUF4527: Protein of u 82.3 33 0.00071 34.7 13.0 85 328-412 19-104 (277)
166 PF07106 TBPIP: Tat binding pr 82.3 8.2 0.00018 35.0 8.3 50 347-396 81-132 (169)
167 KOG4807 F-actin binding protei 82.2 15 0.00032 39.5 11.1 76 341-416 389-489 (593)
168 KOG0946 ER-Golgi vesicle-tethe 82.1 16 0.00034 42.2 11.9 46 346-391 651-696 (970)
169 KOG0933 Structural maintenance 82.1 33 0.00072 40.5 14.6 67 347-413 789-855 (1174)
170 PF06810 Phage_GP20: Phage min 82.0 20 0.00043 33.0 10.8 60 348-407 30-92 (155)
171 PRK09039 hypothetical protein; 81.9 51 0.0011 33.8 14.7 48 347-394 132-179 (343)
172 KOG4360 Uncharacterized coiled 81.9 13 0.00029 40.7 10.9 56 345-400 219-275 (596)
173 PF07200 Mod_r: Modifier of ru 81.8 35 0.00076 30.2 11.9 21 310-331 4-24 (150)
174 PF04728 LPP: Lipoprotein leuc 81.7 14 0.00031 29.4 8.3 47 346-392 4-50 (56)
175 TIGR03495 phage_LysB phage lys 81.7 21 0.00046 32.6 10.6 67 348-414 29-95 (135)
176 cd07666 BAR_SNX7 The Bin/Amphi 81.6 27 0.00058 34.6 12.1 76 326-411 151-228 (243)
177 COG4026 Uncharacterized protei 81.6 17 0.00037 36.4 10.7 45 348-392 138-182 (290)
178 PF10211 Ax_dynein_light: Axon 81.5 31 0.00067 32.6 12.1 29 347-375 129-157 (189)
179 PRK03918 chromosome segregatio 81.5 35 0.00076 37.9 14.3 10 108-117 12-21 (880)
180 PF04977 DivIC: Septum formati 81.5 6.5 0.00014 30.6 6.5 29 364-392 22-50 (80)
181 PF00261 Tropomyosin: Tropomyo 81.4 44 0.00094 32.2 13.3 45 349-393 117-161 (237)
182 TIGR03185 DNA_S_dndD DNA sulfu 81.3 25 0.00054 38.5 13.0 43 345-387 209-251 (650)
183 PF12718 Tropomyosin_1: Tropom 81.3 18 0.00039 32.8 10.1 71 344-414 13-86 (143)
184 PRK05431 seryl-tRNA synthetase 81.2 25 0.00053 37.0 12.4 87 322-413 10-99 (425)
185 KOG0977 Nuclear envelope prote 81.2 30 0.00065 38.1 13.4 48 344-391 147-194 (546)
186 PF02841 GBP_C: Guanylate-bind 81.1 47 0.001 32.9 13.8 13 401-413 284-296 (297)
187 PF11365 DUF3166: Protein of u 81.1 25 0.00053 30.7 10.3 44 347-390 3-46 (96)
188 COG1340 Uncharacterized archae 81.1 44 0.00094 34.3 13.6 83 326-414 28-120 (294)
189 KOG3650 Predicted coiled-coil 81.1 6.8 0.00015 34.8 7.0 43 352-394 63-105 (120)
190 COG4372 Uncharacterized protei 81.1 71 0.0015 34.5 15.5 75 340-414 132-223 (499)
191 PF10226 DUF2216: Uncharacteri 80.9 35 0.00076 33.2 12.2 17 324-340 23-39 (195)
192 PRK02119 hypothetical protein; 80.9 14 0.00031 30.1 8.4 50 346-395 3-52 (73)
193 PRK04406 hypothetical protein; 80.7 16 0.00034 30.1 8.6 49 346-394 5-53 (75)
194 PRK13729 conjugal transfer pil 80.5 7.6 0.00016 42.0 8.5 38 348-385 72-109 (475)
195 PF03962 Mnd1: Mnd1 family; I 80.4 20 0.00044 33.8 10.5 53 337-390 75-127 (188)
196 PF09730 BicD: Microtubule-ass 80.3 14 0.0003 41.8 10.8 74 341-414 58-134 (717)
197 PF00170 bZIP_1: bZIP transcri 80.3 9.3 0.0002 29.6 6.9 24 369-392 29-52 (64)
198 KOG4196 bZIP transcription fac 80.0 7.5 0.00016 35.7 7.1 33 362-394 77-109 (135)
199 PHA03162 hypothetical protein; 80.0 7.3 0.00016 35.8 7.0 28 342-369 10-37 (135)
200 TIGR02209 ftsL_broad cell divi 79.8 11 0.00024 30.1 7.5 41 359-399 24-64 (85)
201 PF05700 BCAS2: Breast carcino 79.8 28 0.00061 33.4 11.4 26 346-371 137-162 (221)
202 PF09744 Jnk-SapK_ap_N: JNK_SA 79.7 47 0.001 30.9 12.4 45 349-393 93-137 (158)
203 PF05377 FlaC_arch: Flagella a 79.5 10 0.00022 30.0 6.9 34 377-410 18-51 (55)
204 PF13166 AAA_13: AAA domain 79.5 47 0.001 36.1 14.2 68 346-413 404-471 (712)
205 PF11180 DUF2968: Protein of u 79.5 42 0.00091 32.6 12.3 64 350-413 117-180 (192)
206 PRK02224 chromosome segregatio 79.4 45 0.00097 37.3 14.4 7 65-71 68-74 (880)
207 PF09730 BicD: Microtubule-ass 79.4 13 0.00028 42.0 10.2 39 355-393 100-141 (717)
208 KOG2391 Vacuolar sorting prote 79.4 16 0.00035 38.3 10.1 11 317-327 210-220 (365)
209 PF12329 TMF_DNA_bd: TATA elem 79.3 25 0.00054 28.7 9.3 51 343-393 10-60 (74)
210 PF07028 DUF1319: Protein of u 79.0 50 0.0011 30.2 12.0 58 354-414 62-123 (126)
211 KOG4643 Uncharacterized coiled 79.0 10 0.00022 44.4 9.4 67 347-413 266-334 (1195)
212 KOG0996 Structural maintenance 78.9 75 0.0016 38.2 16.2 12 251-262 736-747 (1293)
213 cd07596 BAR_SNX The Bin/Amphip 78.9 37 0.0008 30.5 11.3 64 328-391 100-170 (218)
214 PLN02320 seryl-tRNA synthetase 78.8 35 0.00075 37.2 12.8 46 351-396 106-153 (502)
215 KOG0161 Myosin class II heavy 78.8 21 0.00045 44.5 12.3 67 329-395 1644-1710(1930)
216 PRK10803 tol-pal system protei 78.8 10 0.00022 37.3 8.3 42 350-391 45-86 (263)
217 COG1196 Smc Chromosome segrega 78.6 41 0.00089 39.5 14.3 9 105-113 116-124 (1163)
218 PF12325 TMF_TATA_bd: TATA ele 78.6 49 0.0011 29.6 12.0 9 405-413 111-119 (120)
219 PF05667 DUF812: Protein of un 78.5 49 0.0011 36.7 14.0 40 375-414 442-481 (594)
220 PLN02678 seryl-tRNA synthetase 78.1 27 0.00059 37.3 11.7 70 322-395 14-93 (448)
221 KOG4673 Transcription factor T 77.6 49 0.0011 37.9 13.7 89 322-413 503-617 (961)
222 PF02050 FliJ: Flagellar FliJ 77.6 35 0.00076 27.4 11.2 34 345-378 52-85 (123)
223 PF08232 Striatin: Striatin fa 77.5 17 0.00036 32.7 8.5 46 350-395 16-61 (134)
224 PF10168 Nup88: Nuclear pore c 77.4 48 0.001 37.5 13.8 62 324-385 557-619 (717)
225 PRK00106 hypothetical protein; 77.3 80 0.0017 34.8 15.1 21 338-358 65-85 (535)
226 PF15619 Lebercilin: Ciliary p 77.2 51 0.0011 31.5 12.2 15 401-415 171-185 (194)
227 PRK14127 cell division protein 77.1 17 0.00038 32.1 8.4 48 348-395 40-100 (109)
228 COG1196 Smc Chromosome segrega 77.0 55 0.0012 38.5 14.7 9 253-261 636-644 (1163)
229 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.9 38 0.00082 29.9 10.5 11 401-411 119-129 (132)
230 PF14915 CCDC144C: CCDC144C pr 76.8 33 0.00072 35.3 11.4 67 334-400 182-248 (305)
231 PF08581 Tup_N: Tup N-terminal 76.8 43 0.00094 28.0 11.6 67 345-415 4-71 (79)
232 KOG4674 Uncharacterized conser 76.6 13 0.00028 45.9 9.7 66 348-413 1253-1319(1822)
233 PF09325 Vps5: Vps5 C terminal 76.6 44 0.00096 31.0 11.4 56 354-412 165-222 (236)
234 PF07407 Seadorna_VP6: Seadorn 76.3 6.8 0.00015 40.9 6.5 25 354-378 34-58 (420)
235 PRK12705 hypothetical protein; 76.3 1.1E+02 0.0024 33.5 15.8 16 372-387 94-109 (508)
236 PF06216 RTBV_P46: Rice tungro 76.2 14 0.0003 37.8 8.4 51 345-395 64-114 (389)
237 PF04102 SlyX: SlyX; InterPro 76.2 18 0.00039 28.9 7.6 47 349-395 1-47 (69)
238 KOG0249 LAR-interacting protei 76.1 55 0.0012 37.6 13.7 38 356-393 220-257 (916)
239 PF06419 COG6: Conserved oligo 76.1 39 0.00084 37.2 12.5 64 343-406 43-106 (618)
240 PF12709 Kinetocho_Slk19: Cent 76.1 24 0.00052 30.3 8.6 54 340-393 22-76 (87)
241 PF14523 Syntaxin_2: Syntaxin- 76.0 32 0.0007 28.1 9.3 47 346-392 11-59 (102)
242 KOG0288 WD40 repeat protein Ti 75.8 30 0.00066 37.2 11.1 48 358-407 87-134 (459)
243 PF05377 FlaC_arch: Flagella a 75.7 10 0.00023 30.0 5.9 38 347-391 2-39 (55)
244 PF07558 Shugoshin_N: Shugoshi 75.5 3.2 6.9E-05 31.2 2.9 36 355-390 10-45 (46)
245 PRK00286 xseA exodeoxyribonucl 75.4 1.1E+02 0.0023 31.9 14.9 16 324-339 274-289 (438)
246 TIGR00606 rad50 rad50. This fa 75.3 55 0.0012 39.0 14.3 20 350-369 886-905 (1311)
247 PF03962 Mnd1: Mnd1 family; I 75.2 25 0.00053 33.3 9.4 55 342-396 66-126 (188)
248 PF06632 XRCC4: DNA double-str 75.1 33 0.00071 35.6 11.0 38 348-385 140-177 (342)
249 COG1340 Uncharacterized archae 75.0 91 0.002 32.1 13.9 72 318-394 5-76 (294)
250 TIGR01843 type_I_hlyD type I s 75.0 57 0.0012 32.4 12.4 28 348-375 147-174 (423)
251 PF09727 CortBP2: Cortactin-bi 74.9 65 0.0014 31.2 12.2 45 345-389 127-171 (192)
252 PF09738 DUF2051: Double stran 74.9 30 0.00065 35.3 10.5 83 317-400 85-167 (302)
253 PRK02224 chromosome segregatio 74.9 76 0.0016 35.5 14.5 10 349-358 513-522 (880)
254 PRK04863 mukB cell division pr 74.9 74 0.0016 39.0 15.3 44 351-394 382-425 (1486)
255 PRK05255 hypothetical protein; 74.8 26 0.00056 33.2 9.4 25 330-354 59-83 (171)
256 TIGR00634 recN DNA repair prot 74.8 7.8 0.00017 41.6 6.8 90 318-407 138-236 (563)
257 PRK06569 F0F1 ATP synthase sub 74.6 73 0.0016 29.8 12.2 45 323-367 40-84 (155)
258 PF09325 Vps5: Vps5 C terminal 74.6 72 0.0016 29.5 12.4 76 336-414 126-201 (236)
259 KOG4343 bZIP transcription fac 74.5 17 0.00037 40.2 9.1 64 320-394 274-337 (655)
260 PF09763 Sec3_C: Exocyst compl 74.3 70 0.0015 35.4 14.0 72 344-415 22-96 (701)
261 PF10174 Cast: RIM-binding pro 74.3 60 0.0013 37.2 13.7 67 347-413 310-376 (775)
262 COG4372 Uncharacterized protei 74.1 68 0.0015 34.6 13.1 67 346-413 124-191 (499)
263 PF10212 TTKRSYEDQ: Predicted 74.1 31 0.00067 37.8 10.9 45 350-394 432-476 (518)
264 PF10168 Nup88: Nuclear pore c 74.0 47 0.001 37.6 12.7 44 348-391 561-604 (717)
265 KOG0161 Myosin class II heavy 73.9 28 0.0006 43.5 11.6 68 346-413 1612-1679(1930)
266 PRK01156 chromosome segregatio 73.8 93 0.002 35.1 15.0 46 347-392 199-244 (895)
267 KOG0709 CREB/ATF family transc 73.7 7.2 0.00016 42.0 6.1 56 338-393 254-313 (472)
268 PF01166 TSC22: TSC-22/dip/bun 73.7 5.9 0.00013 31.8 4.1 30 359-388 14-43 (59)
269 PF14988 DUF4515: Domain of un 73.6 40 0.00087 32.4 10.5 46 368-413 151-196 (206)
270 TIGR02231 conserved hypothetic 73.5 37 0.00081 36.1 11.3 29 364-392 136-164 (525)
271 KOG0994 Extracellular matrix g 73.5 16 0.00035 43.7 9.0 99 291-395 1197-1296(1758)
272 TIGR03185 DNA_S_dndD DNA sulfu 73.5 73 0.0016 35.0 13.7 44 346-389 422-465 (650)
273 PF05622 HOOK: HOOK protein; 73.1 1.1 2.4E-05 49.3 0.0 58 338-395 318-378 (713)
274 PF09789 DUF2353: Uncharacteri 72.9 1.1E+02 0.0023 31.9 13.9 42 349-390 69-110 (319)
275 PF15070 GOLGA2L5: Putative go 72.9 58 0.0012 36.3 12.9 16 380-395 87-102 (617)
276 PF04871 Uso1_p115_C: Uso1 / p 72.9 56 0.0012 29.5 10.7 14 348-361 58-71 (136)
277 cd07627 BAR_Vps5p The Bin/Amph 72.8 54 0.0012 31.1 11.1 29 336-364 106-134 (216)
278 PF06810 Phage_GP20: Phage min 72.6 42 0.00091 30.9 10.0 63 339-404 28-93 (155)
279 PRK10636 putative ABC transpor 72.6 36 0.00078 37.3 11.2 52 345-396 563-621 (638)
280 PF09755 DUF2046: Uncharacteri 72.6 38 0.00082 35.0 10.6 24 347-370 43-66 (310)
281 PF06785 UPF0242: Uncharacteri 72.6 58 0.0013 34.4 12.0 68 325-396 76-157 (401)
282 PF15058 Speriolin_N: Sperioli 72.6 7 0.00015 37.9 5.1 37 347-391 7-43 (200)
283 PRK10361 DNA recombination pro 72.5 1.1E+02 0.0024 33.4 14.5 20 353-372 68-87 (475)
284 PF04340 DUF484: Protein of un 72.4 18 0.0004 34.2 7.9 46 346-395 41-86 (225)
285 KOG4378 Nuclear protein COP1 [ 72.4 40 0.00087 37.4 11.2 88 324-415 583-671 (673)
286 PF02841 GBP_C: Guanylate-bind 72.4 1E+02 0.0022 30.5 13.4 14 401-414 277-290 (297)
287 PF04340 DUF484: Protein of un 72.3 32 0.0007 32.5 9.6 44 367-410 41-84 (225)
288 PF04999 FtsL: Cell division p 72.3 20 0.00043 29.6 7.2 44 357-400 33-76 (97)
289 PF06632 XRCC4: DNA double-str 72.2 42 0.00092 34.8 11.0 31 349-379 148-178 (342)
290 KOG0971 Microtubule-associated 72.2 63 0.0014 38.1 13.1 40 336-375 401-440 (1243)
291 TIGR01069 mutS2 MutS2 family p 72.0 53 0.0011 37.3 12.6 10 198-207 407-416 (771)
292 TIGR02680 conserved hypothetic 72.0 80 0.0017 38.1 14.6 42 349-390 280-321 (1353)
293 PF03980 Nnf1: Nnf1 ; InterPr 71.8 6.4 0.00014 33.4 4.3 31 342-372 77-107 (109)
294 TIGR00237 xseA exodeoxyribonuc 71.7 1.1E+02 0.0024 32.3 14.1 11 325-335 270-280 (432)
295 PF07716 bZIP_2: Basic region 71.4 12 0.00027 28.2 5.3 29 366-394 25-53 (54)
296 PF05278 PEARLI-4: Arabidopsis 71.2 86 0.0019 31.9 12.6 11 251-261 121-131 (269)
297 KOG2010 Double stranded RNA bi 71.1 12 0.00026 39.2 6.7 54 349-402 144-198 (405)
298 KOG2264 Exostosin EXT1L [Signa 71.0 24 0.00053 39.5 9.3 49 344-392 92-140 (907)
299 PRK02793 phi X174 lysis protei 71.0 37 0.00079 27.7 8.3 47 348-394 4-50 (72)
300 PF04899 MbeD_MobD: MbeD/MobD 71.0 34 0.00075 28.1 8.1 33 363-395 25-57 (70)
301 TIGR02231 conserved hypothetic 70.9 77 0.0017 33.7 12.9 32 363-394 128-159 (525)
302 PF15066 CAGE1: Cancer-associa 70.9 24 0.00051 38.5 9.0 33 345-377 404-436 (527)
303 PF10226 DUF2216: Uncharacteri 70.8 1.1E+02 0.0024 29.9 13.0 28 300-327 7-34 (195)
304 KOG2273 Membrane coat complex 70.8 68 0.0015 33.9 12.4 80 335-414 377-462 (503)
305 COG3883 Uncharacterized protei 70.7 68 0.0015 32.5 11.7 71 324-394 38-112 (265)
306 PF12329 TMF_DNA_bd: TATA elem 70.7 57 0.0012 26.6 10.5 48 347-394 7-54 (74)
307 PF10146 zf-C4H2: Zinc finger- 70.6 81 0.0018 31.0 12.1 61 348-408 42-103 (230)
308 COG1382 GimC Prefoldin, chaper 70.5 83 0.0018 28.4 12.1 37 378-414 75-111 (119)
309 PRK00409 recombination and DNA 70.5 56 0.0012 37.1 12.4 10 198-207 412-421 (782)
310 PRK10929 putative mechanosensi 70.2 1.2E+02 0.0026 36.3 15.2 62 354-415 260-331 (1109)
311 PF14817 HAUS5: HAUS augmin-li 70.1 82 0.0018 35.4 13.3 32 348-379 82-113 (632)
312 PLN02678 seryl-tRNA synthetase 70.1 30 0.00064 37.0 9.6 19 367-385 79-97 (448)
313 PRK00295 hypothetical protein; 69.7 38 0.00082 27.3 8.0 45 350-394 3-47 (68)
314 PF10498 IFT57: Intra-flagella 69.6 50 0.0011 34.4 10.9 68 345-413 266-347 (359)
315 PF04977 DivIC: Septum formati 69.6 19 0.00042 27.9 6.3 30 342-371 21-50 (80)
316 PF05812 Herpes_BLRF2: Herpesv 69.5 7.9 0.00017 34.8 4.5 28 343-370 1-28 (118)
317 PRK04325 hypothetical protein; 69.3 40 0.00087 27.6 8.2 48 347-394 4-51 (74)
318 PF07989 Microtub_assoc: Micro 69.2 19 0.00041 29.7 6.3 23 373-395 7-29 (75)
319 PF08172 CASP_C: CASP C termin 69.2 19 0.00042 35.6 7.5 30 345-374 107-136 (248)
320 PF14282 FlxA: FlxA-like prote 68.9 29 0.00063 29.9 7.7 20 366-385 51-70 (106)
321 PF14817 HAUS5: HAUS augmin-li 68.9 65 0.0014 36.2 12.2 81 333-413 74-154 (632)
322 PF12128 DUF3584: Protein of u 68.7 1.2E+02 0.0026 36.1 14.9 14 174-187 581-594 (1201)
323 KOG3564 GTPase-activating prot 68.5 56 0.0012 36.1 11.2 63 336-398 37-102 (604)
324 PF10779 XhlA: Haemolysin XhlA 68.4 39 0.00085 27.0 7.9 48 348-395 2-49 (71)
325 PF15294 Leu_zip: Leucine zipp 68.4 19 0.00042 36.5 7.4 46 368-413 127-172 (278)
326 PF13805 Pil1: Eisosome compon 68.4 61 0.0013 32.9 10.9 29 346-374 166-194 (271)
327 PF09728 Taxilin: Myosin-like 68.3 47 0.001 33.7 10.2 14 401-414 286-299 (309)
328 PHA03155 hypothetical protein; 68.2 53 0.0011 29.6 9.3 25 346-370 9-33 (115)
329 smart00502 BBC B-Box C-termina 68.2 65 0.0014 26.3 12.4 26 343-368 19-44 (127)
330 KOG0976 Rho/Rac1-interacting s 68.1 49 0.0011 38.6 11.1 37 356-392 96-132 (1265)
331 PF06637 PV-1: PV-1 protein (P 68.1 1.3E+02 0.0029 32.3 13.5 77 335-411 317-395 (442)
332 TIGR00414 serS seryl-tRNA synt 68.1 1.2E+02 0.0025 32.0 13.4 68 344-411 29-100 (418)
333 PRK10920 putative uroporphyrin 67.8 60 0.0013 34.3 11.1 54 362-415 88-143 (390)
334 PF05300 DUF737: Protein of un 67.6 64 0.0014 31.0 10.4 53 328-380 117-169 (187)
335 PF05529 Bap31: B-cell recepto 67.5 62 0.0013 29.9 10.1 12 401-412 175-186 (192)
336 PF14988 DUF4515: Domain of un 67.5 1.2E+02 0.0026 29.2 12.7 54 347-400 151-204 (206)
337 PF07798 DUF1640: Protein of u 67.4 77 0.0017 29.3 10.7 68 348-415 47-127 (177)
338 COG1842 PspA Phage shock prote 67.4 69 0.0015 31.4 10.8 42 350-391 97-138 (225)
339 KOG1265 Phospholipase C [Lipid 67.4 1.1E+02 0.0024 36.3 13.6 68 325-392 1029-1101(1189)
340 KOG4603 TBP-1 interacting prot 67.2 42 0.00091 32.5 9.0 19 350-368 91-109 (201)
341 PF06008 Laminin_I: Laminin Do 67.1 79 0.0017 30.7 11.2 46 347-392 54-99 (264)
342 COG4467 Regulator of replicati 67.1 29 0.00062 31.2 7.4 44 349-392 5-48 (114)
343 PF07558 Shugoshin_N: Shugoshi 67.1 5.6 0.00012 30.0 2.6 42 326-368 3-44 (46)
344 PRK00846 hypothetical protein; 67.0 47 0.001 27.9 8.2 47 348-394 9-55 (77)
345 PF10205 KLRAQ: Predicted coil 66.9 92 0.002 27.5 10.5 44 352-395 26-69 (102)
346 PF09727 CortBP2: Cortactin-bi 66.6 1.3E+02 0.0027 29.3 12.2 87 324-415 94-180 (192)
347 PF10205 KLRAQ: Predicted coil 66.6 57 0.0012 28.8 9.1 46 348-393 15-60 (102)
348 KOG1850 Myosin-like coiled-coi 66.6 1.5E+02 0.0033 31.3 13.4 88 306-394 69-158 (391)
349 KOG4403 Cell surface glycoprot 66.4 40 0.00087 36.7 9.5 12 173-184 90-101 (575)
350 KOG0971 Microtubule-associated 66.3 1.5E+02 0.0032 35.3 14.4 63 327-389 283-355 (1243)
351 PRK13428 F0F1 ATP synthase sub 66.0 1.9E+02 0.0041 30.8 15.1 45 323-367 31-75 (445)
352 PF06008 Laminin_I: Laminin Do 66.0 66 0.0014 31.2 10.4 71 343-413 43-113 (264)
353 PF04871 Uso1_p115_C: Uso1 / p 65.9 78 0.0017 28.6 10.1 18 349-366 31-48 (136)
354 KOG0804 Cytoplasmic Zn-finger 65.8 1E+02 0.0023 33.6 12.5 19 327-345 367-385 (493)
355 PRK00736 hypothetical protein; 65.7 50 0.0011 26.6 8.0 45 350-394 3-47 (68)
356 KOG3433 Protein involved in me 65.6 73 0.0016 31.1 10.3 39 334-372 105-143 (203)
357 PRK00409 recombination and DNA 65.5 63 0.0014 36.7 11.5 10 325-334 517-526 (782)
358 PF09738 DUF2051: Double stran 65.4 51 0.0011 33.7 9.8 39 348-386 122-160 (302)
359 COG5293 Predicted ATPase [Gene 65.4 1.3E+02 0.0029 33.2 13.2 86 327-413 330-425 (591)
360 PF11544 Spc42p: Spindle pole 65.4 49 0.0011 27.9 8.0 47 347-393 7-53 (76)
361 PF04899 MbeD_MobD: MbeD/MobD 65.3 77 0.0017 26.1 10.2 45 351-395 20-64 (70)
362 KOG2129 Uncharacterized conser 65.0 17 0.00037 39.2 6.6 38 348-385 46-83 (552)
363 TIGR01010 BexC_CtrB_KpsE polys 65.0 1.6E+02 0.0035 29.7 16.4 13 401-413 253-265 (362)
364 TIGR02132 phaR_Bmeg polyhydrox 64.6 68 0.0015 31.1 9.8 17 347-363 81-97 (189)
365 PF14932 HAUS-augmin3: HAUS au 64.2 97 0.0021 30.4 11.2 41 345-385 68-108 (256)
366 PF04129 Vps52: Vps52 / Sac2 f 64.2 93 0.002 33.5 12.0 72 342-413 11-82 (508)
367 PF02388 FemAB: FemAB family; 64.0 44 0.00095 34.7 9.3 47 344-394 241-287 (406)
368 KOG0243 Kinesin-like protein [ 64.0 1.9E+02 0.0041 34.5 15.0 55 340-394 443-497 (1041)
369 KOG4001 Axonemal dynein light 63.8 1.5E+02 0.0032 29.7 12.1 37 349-385 189-225 (259)
370 PF04642 DUF601: Protein of un 63.7 29 0.00063 35.3 7.5 58 345-402 217-283 (311)
371 PF07889 DUF1664: Protein of u 63.6 88 0.0019 28.4 10.0 57 339-395 62-118 (126)
372 PF04859 DUF641: Plant protein 63.6 24 0.00052 32.2 6.4 42 347-388 89-130 (131)
373 PF12999 PRKCSH-like: Glucosid 63.4 55 0.0012 31.3 9.0 62 308-372 112-173 (176)
374 PF15112 DUF4559: Domain of un 63.3 18 0.00039 37.2 6.2 34 383-416 253-286 (307)
375 TIGR00998 8a0101 efflux pump m 63.1 51 0.0011 32.1 9.1 22 351-372 100-121 (334)
376 PF09787 Golgin_A5: Golgin sub 62.9 90 0.002 33.5 11.6 63 334-396 235-304 (511)
377 PF10482 CtIP_N: Tumour-suppre 62.7 57 0.0012 29.6 8.5 32 344-375 34-65 (120)
378 KOG0996 Structural maintenance 62.6 1.1E+02 0.0024 37.0 12.8 73 335-407 532-604 (1293)
379 PF05483 SCP-1: Synaptonemal c 62.6 87 0.0019 35.9 11.6 62 353-414 588-649 (786)
380 PRK10929 putative mechanosensi 62.5 1.2E+02 0.0026 36.3 13.3 29 347-375 104-132 (1109)
381 PRK14474 F0F1 ATP synthase sub 62.5 1.6E+02 0.0035 28.9 13.6 46 323-368 35-80 (250)
382 PF01166 TSC22: TSC-22/dip/bun 62.4 13 0.00028 29.9 4.0 22 345-366 21-42 (59)
383 KOG0933 Structural maintenance 62.4 1.6E+02 0.0034 35.3 13.9 44 348-391 818-861 (1174)
384 KOG4797 Transcriptional regula 62.4 17 0.00037 32.7 5.1 40 359-399 67-106 (123)
385 PRK14011 prefoldin subunit alp 62.2 43 0.00094 30.7 7.9 13 385-397 125-137 (144)
386 PRK14160 heat shock protein Gr 62.2 79 0.0017 30.9 10.1 43 349-391 58-100 (211)
387 PF07412 Geminin: Geminin; In 62.1 29 0.00063 33.8 7.1 30 358-387 124-153 (200)
388 PF07407 Seadorna_VP6: Seadorn 62.0 37 0.00081 35.8 8.2 29 367-395 33-61 (420)
389 PF09787 Golgin_A5: Golgin sub 61.9 1.6E+02 0.0035 31.7 13.3 58 331-388 239-310 (511)
390 PF13874 Nup54: Nucleoporin co 61.8 64 0.0014 28.9 8.8 40 356-395 83-122 (141)
391 PRK01156 chromosome segregatio 61.8 2.1E+02 0.0045 32.4 14.6 41 353-393 198-238 (895)
392 PF15397 DUF4618: Domain of un 61.6 1.8E+02 0.004 29.4 12.7 72 342-413 78-154 (258)
393 KOG0804 Cytoplasmic Zn-finger 61.5 84 0.0018 34.3 10.9 23 363-385 386-408 (493)
394 COG1729 Uncharacterized protei 61.4 20 0.00042 36.1 6.0 49 347-396 58-106 (262)
395 COG1792 MreC Cell shape-determ 61.3 41 0.00089 33.7 8.2 15 374-388 91-105 (284)
396 KOG0994 Extracellular matrix g 61.3 1.1E+02 0.0025 37.1 12.6 49 366-414 1689-1744(1758)
397 TIGR01069 mutS2 MutS2 family p 61.2 2.5E+02 0.0055 32.1 15.2 12 348-359 546-557 (771)
398 PF12808 Mto2_bdg: Micro-tubul 61.2 24 0.00052 27.7 5.1 48 342-392 1-48 (52)
399 KOG4370 Ral-GTPase effector RL 61.1 15 0.00033 39.6 5.3 34 362-395 409-442 (514)
400 PF08232 Striatin: Striatin fa 61.1 70 0.0015 28.8 8.9 15 379-393 24-38 (134)
401 PF04136 Sec34: Sec34-like fam 61.0 1.4E+02 0.0029 27.5 11.4 53 347-399 23-75 (157)
402 PRK11147 ABC transporter ATPas 60.9 43 0.00094 36.4 9.0 50 347-396 570-625 (635)
403 PRK09174 F0F1 ATP synthase sub 60.8 1.6E+02 0.0035 28.2 15.1 47 322-368 82-128 (204)
404 COG1382 GimC Prefoldin, chaper 60.7 40 0.00087 30.4 7.2 41 339-379 64-104 (119)
405 PF01486 K-box: K-box region; 60.7 33 0.00072 28.8 6.4 17 349-365 79-95 (100)
406 PF13815 Dzip-like_N: Iguana/D 60.7 98 0.0021 26.9 9.5 25 321-345 27-51 (118)
407 PF01486 K-box: K-box region; 60.6 28 0.0006 29.2 5.9 28 363-390 72-99 (100)
408 KOG0980 Actin-binding protein 60.4 1.9E+02 0.0042 34.0 14.0 31 330-360 451-481 (980)
409 TIGR00606 rad50 rad50. This fa 60.3 2.2E+02 0.0048 34.1 15.1 27 349-375 228-254 (1311)
410 PF11500 Cut12: Spindle pole b 60.3 73 0.0016 29.9 9.0 52 324-375 84-135 (152)
411 KOG1924 RhoA GTPase effector D 60.3 17 0.00036 42.0 5.8 17 373-389 987-1003(1102)
412 PRK10361 DNA recombination pro 60.2 2.6E+02 0.0057 30.6 14.8 23 367-389 68-90 (475)
413 KOG2391 Vacuolar sorting prote 60.2 56 0.0012 34.4 9.1 7 42-48 29-35 (365)
414 TIGR03545 conserved hypothetic 60.0 82 0.0018 34.7 10.8 71 343-414 189-268 (555)
415 KOG0612 Rho-associated, coiled 59.8 1.3E+02 0.0027 36.6 12.7 23 97-121 220-243 (1317)
416 PF04751 DUF615: Protein of un 59.6 31 0.00067 32.1 6.5 24 331-354 49-72 (157)
417 PF10224 DUF2205: Predicted co 59.6 38 0.00083 28.5 6.5 40 345-384 30-69 (80)
418 PF01920 Prefoldin_2: Prefoldi 59.4 30 0.00066 28.2 5.9 23 348-370 65-87 (106)
419 COG4985 ABC-type phosphate tra 59.2 48 0.001 33.5 8.1 79 303-381 163-243 (289)
420 PF07246 Phlebovirus_NSM: Phle 59.1 94 0.002 31.6 10.2 8 237-244 104-111 (264)
421 PF05064 Nsp1_C: Nsp1-like C-t 59.0 7 0.00015 34.1 2.1 29 367-395 58-86 (116)
422 PF07851 TMPIT: TMPIT-like pro 58.9 1.3E+02 0.0028 31.4 11.5 26 346-371 5-30 (330)
423 PRK06975 bifunctional uroporph 58.9 66 0.0014 35.8 10.0 58 351-414 370-427 (656)
424 PF05911 DUF869: Plant protein 58.9 2.2E+02 0.0047 32.9 14.1 16 176-191 381-396 (769)
425 PF08606 Prp19: Prp19/Pso4-lik 58.8 63 0.0014 26.9 7.4 32 365-396 7-38 (70)
426 PRK13923 putative spore coat p 58.6 60 0.0013 30.9 8.3 36 346-381 112-147 (170)
427 KOG0963 Transcription factor/C 58.6 1.5E+02 0.0033 33.4 12.5 69 346-415 279-358 (629)
428 PF04375 HemX: HemX; InterPro 58.6 1.2E+02 0.0026 31.3 11.3 43 373-415 93-137 (372)
429 KOG1029 Endocytic adaptor prot 58.6 73 0.0016 37.1 10.2 47 346-392 473-519 (1118)
430 PF08702 Fib_alpha: Fibrinogen 58.5 1.5E+02 0.0032 27.2 12.2 51 342-392 79-130 (146)
431 PRK11091 aerobic respiration c 58.4 1.5E+02 0.0033 32.3 12.6 54 344-397 102-155 (779)
432 PF10267 Tmemb_cc2: Predicted 58.4 84 0.0018 33.4 10.2 39 376-414 272-318 (395)
433 PF03938 OmpH: Outer membrane 58.3 82 0.0018 27.7 8.8 72 344-415 35-112 (158)
434 PRK10869 recombination and rep 58.3 1.7E+02 0.0036 32.0 12.7 57 349-405 168-230 (553)
435 PF03961 DUF342: Protein of un 58.1 80 0.0017 33.1 10.1 29 364-392 373-401 (451)
436 KOG1103 Predicted coiled-coil 58.0 1.9E+02 0.0042 31.1 12.6 83 304-390 89-177 (561)
437 KOG3091 Nuclear pore complex, 57.9 98 0.0021 34.0 10.7 88 325-416 363-481 (508)
438 KOG4001 Axonemal dynein light 57.8 80 0.0017 31.5 9.2 18 246-263 121-138 (259)
439 COG2919 Septum formation initi 57.8 1.3E+02 0.0028 26.3 12.2 48 358-408 49-96 (117)
440 PF04375 HemX: HemX; InterPro 57.7 90 0.002 32.2 10.2 14 378-391 105-118 (372)
441 PRK11281 hypothetical protein; 57.6 1.9E+02 0.0041 34.7 13.8 61 354-414 280-350 (1113)
442 PF15254 CCDC14: Coiled-coil d 57.5 76 0.0016 36.7 10.2 39 351-389 440-478 (861)
443 PF05791 Bacillus_HBL: Bacillu 57.5 1.4E+02 0.0031 27.8 10.7 75 337-414 102-176 (184)
444 TIGR02680 conserved hypothetic 57.3 2E+02 0.0044 34.8 14.2 41 335-375 872-912 (1353)
445 PF08286 Spc24: Spc24 subunit 57.3 3.7 8.1E-05 35.6 0.2 39 358-396 5-43 (118)
446 cd07667 BAR_SNX30 The Bin/Amph 57.2 1.8E+02 0.0039 29.0 11.7 68 339-409 154-223 (240)
447 PF05557 MAD: Mitotic checkpoi 57.2 40 0.00087 37.5 8.1 71 344-414 509-612 (722)
448 TIGR02209 ftsL_broad cell divi 57.1 76 0.0017 25.3 7.7 28 344-371 30-57 (85)
449 PF09728 Taxilin: Myosin-like 57.1 2.3E+02 0.005 28.9 14.7 46 345-390 50-95 (309)
450 PF11544 Spc42p: Spindle pole 56.5 97 0.0021 26.2 8.3 33 359-391 5-37 (76)
451 TIGR03007 pepcterm_ChnLen poly 56.2 1.9E+02 0.004 30.3 12.3 54 347-400 312-368 (498)
452 smart00435 TOPEUc DNA Topoisom 56.1 47 0.001 35.3 7.9 17 249-265 169-186 (391)
453 KOG2991 Splicing regulator [RN 56.1 95 0.0021 31.9 9.7 71 346-416 109-185 (330)
454 PRK11281 hypothetical protein; 56.0 93 0.002 37.2 11.0 20 324-343 160-179 (1113)
455 PF14735 HAUS4: HAUS augmin-li 55.9 2.2E+02 0.0047 28.3 14.4 105 308-412 72-193 (238)
456 KOG0978 E3 ubiquitin ligase in 55.8 2.7E+02 0.006 31.9 14.1 36 353-388 567-602 (698)
457 PF13874 Nup54: Nucleoporin co 55.6 1.2E+02 0.0026 27.1 9.5 45 346-390 52-96 (141)
458 PF12795 MscS_porin: Mechanose 55.6 2E+02 0.0043 27.6 12.7 59 353-411 151-217 (240)
459 PF14645 Chibby: Chibby family 55.4 40 0.00086 29.9 6.3 30 351-380 77-106 (116)
460 PRK03992 proteasome-activating 55.4 46 0.001 34.2 7.7 42 350-391 6-47 (389)
461 PF11180 DUF2968: Protein of u 55.2 2.1E+02 0.0046 27.9 13.7 68 329-396 110-177 (192)
462 PF12808 Mto2_bdg: Micro-tubul 55.2 36 0.00079 26.7 5.3 26 348-373 25-50 (52)
463 PRK10963 hypothetical protein; 55.2 44 0.00095 32.0 7.0 55 350-408 42-96 (223)
464 PF04012 PspA_IM30: PspA/IM30 55.1 1.8E+02 0.004 27.2 13.9 26 367-392 106-131 (221)
465 PRK14872 rod shape-determining 55.0 54 0.0012 34.1 8.0 59 354-416 33-96 (337)
466 PF09731 Mitofilin: Mitochondr 55.0 3E+02 0.0065 29.6 13.9 18 315-332 267-284 (582)
467 KOG1924 RhoA GTPase effector D 54.9 34 0.00074 39.7 7.0 7 173-179 655-661 (1102)
468 KOG2189 Vacuolar H+-ATPase V0 54.9 1E+02 0.0022 35.7 10.7 30 363-392 96-125 (829)
469 KOG1937 Uncharacterized conser 54.9 2E+02 0.0043 31.7 12.2 101 313-413 252-378 (521)
470 COG5185 HEC1 Protein involved 54.8 2.9E+02 0.0063 30.8 13.5 22 347-368 339-360 (622)
471 KOG4438 Centromere-associated 54.7 3E+02 0.0065 30.0 13.5 101 311-416 242-342 (446)
472 KOG1645 RING-finger-containing 54.6 83 0.0018 34.0 9.4 81 301-391 31-111 (463)
473 KOG0978 E3 ubiquitin ligase in 54.5 1.1E+02 0.0025 34.8 10.9 80 334-416 33-112 (698)
474 PF04728 LPP: Lipoprotein leuc 54.5 68 0.0015 25.6 6.7 39 352-390 3-41 (56)
475 smart00503 SynN Syntaxin N-ter 54.5 1.2E+02 0.0026 24.9 10.0 72 344-415 21-103 (117)
476 TIGR00763 lon ATP-dependent pr 54.3 1.1E+02 0.0025 34.4 11.0 100 312-416 176-279 (775)
477 COG1842 PspA Phage shock prote 54.3 1.7E+02 0.0037 28.7 11.0 67 336-402 90-156 (225)
478 PF08912 Rho_Binding: Rho Bind 54.2 1.3E+02 0.0028 25.0 9.0 57 350-413 1-61 (69)
479 TIGR01554 major_cap_HK97 phage 54.2 85 0.0018 31.9 9.2 64 347-410 1-64 (378)
480 PF05837 CENP-H: Centromere pr 54.2 1.4E+02 0.0031 25.7 10.0 69 344-413 16-84 (106)
481 PF12777 MT: Microtubule-bindi 54.1 53 0.0011 33.4 7.8 63 343-405 219-281 (344)
482 PF05557 MAD: Mitotic checkpoi 53.3 89 0.0019 34.8 9.9 59 356-414 500-579 (722)
483 KOG2751 Beclin-like protein [S 53.3 67 0.0015 34.7 8.5 71 336-415 155-225 (447)
484 PHA03011 hypothetical protein; 53.3 98 0.0021 27.8 8.2 63 351-413 56-118 (120)
485 PRK15396 murein lipoprotein; P 53.2 90 0.0019 26.2 7.6 46 347-392 27-72 (78)
486 PF14362 DUF4407: Domain of un 52.9 2.4E+02 0.0051 27.8 13.9 88 323-413 111-223 (301)
487 PRK11020 hypothetical protein; 52.9 88 0.0019 28.4 8.0 60 357-416 3-68 (118)
488 KOG0982 Centrosomal protein Nu 52.9 2.8E+02 0.006 30.5 12.9 101 316-416 274-386 (502)
489 PF05278 PEARLI-4: Arabidopsis 52.8 2E+02 0.0043 29.4 11.3 69 326-394 181-249 (269)
490 KOG1899 LAR transmembrane tyro 52.6 86 0.0019 35.7 9.4 76 341-416 163-261 (861)
491 KOG0999 Microtubule-associated 52.5 1.7E+02 0.0037 33.1 11.6 89 322-414 115-207 (772)
492 KOG4603 TBP-1 interacting prot 52.4 96 0.0021 30.2 8.6 66 347-412 88-156 (201)
493 COG3167 PilO Tfp pilus assembl 52.3 66 0.0014 31.6 7.6 66 343-413 47-112 (211)
494 PF14282 FlxA: FlxA-like prote 52.3 84 0.0018 27.1 7.6 52 344-395 25-80 (106)
495 PF12795 MscS_porin: Mechanose 52.2 1.7E+02 0.0038 28.0 10.6 69 344-412 149-218 (240)
496 KOG2077 JNK/SAPK-associated pr 52.2 84 0.0018 35.5 9.2 78 306-399 299-376 (832)
497 PF06102 DUF947: Domain of unk 52.1 1.3E+02 0.0029 28.1 9.4 61 355-415 59-121 (168)
498 PRK11091 aerobic respiration c 51.9 2.3E+02 0.005 31.0 12.7 83 334-416 78-160 (779)
499 TIGR01005 eps_transp_fam exopo 51.9 2.9E+02 0.0062 30.8 13.5 93 321-414 164-264 (754)
500 PRK10963 hypothetical protein; 51.9 53 0.0011 31.5 7.0 48 368-415 39-86 (223)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.42 E-value=1e-12 Score=101.91 Aligned_cols=63 Identities=41% Similarity=0.534 Sum_probs=58.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383 (416)
Q Consensus 321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ 383 (416)
.|+|+.+|+++||+||++||+||+.|+.+||.+|+.|+.+|..|..++..|+.++..|..++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999998888888877653
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.31 E-value=1.3e-11 Score=95.67 Aligned_cols=61 Identities=41% Similarity=0.632 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN 382 (416)
Q Consensus 322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN 382 (416)
+.|+.+|+++||+||+++|+||+.|+.+||.+|..|+.+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578899999999999999999999999999999999999999999999999999998887
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.18 E-value=1.8e-10 Score=111.52 Aligned_cols=82 Identities=26% Similarity=0.390 Sum_probs=74.0
Q ss_pred hhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 313 EKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 313 ~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.+|.-+. -++|-.||+||||.+|+-+|.|||+.++++|..|..|..||..|..+...|++.+..|+.+|.+|..+|+.+
T Consensus 59 ~RL~HLS-~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 59 RRLDHLS-WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HhhcccC-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444442 478999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHH
Q 014879 393 EQQ 395 (416)
Q Consensus 393 EqQ 395 (416)
.|.
T Consensus 138 ~~~ 140 (292)
T KOG4005|consen 138 RQE 140 (292)
T ss_pred HHH
Confidence 654
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.08 E-value=5.6e-10 Score=84.40 Aligned_cols=53 Identities=40% Similarity=0.585 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRD 374 (416)
Q Consensus 321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre 374 (416)
.|+++.||. +||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.+
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357788888 99999999999999999999999999999999999999988754
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.08 E-value=1.8e-10 Score=120.88 Aligned_cols=63 Identities=38% Similarity=0.579 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK 386 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK 386 (416)
||..|||+||+||..||+|||+|+..||.+++.|..||..|+++...|.+++..|..||.+||
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 677899999999999999999999999999999999999999999999999999999999986
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.93 E-value=1.5e-09 Score=107.54 Aligned_cols=53 Identities=26% Similarity=0.457 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
.||.-|++||||+|+.+|+|||+|+.+||.+|..|+++|..|-++|..|..-+
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 58888999999999999999999999999999999999999999998887544
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.91 E-value=1.6e-09 Score=112.30 Aligned_cols=64 Identities=30% Similarity=0.436 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
.-||+||+|+|.+||+.||+|||+||+.||.+|....+||++|..|+..|+.++..|..+.+.|
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999888776555555554433
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.21 E-value=1.8e-08 Score=83.70 Aligned_cols=79 Identities=25% Similarity=0.419 Sum_probs=57.8
Q ss_pred ChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381 (416)
Q Consensus 302 s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE 381 (416)
+-.|+++.+ ..|.+--..+-|.+||.++||.+|++||.||+.++.+||.++..|+.+...|..++..++.+...+..+
T Consensus 10 ~v~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~ 87 (92)
T PF03131_consen 10 SVREFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRK 87 (92)
T ss_dssp -HHHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_pred CHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666 444444444568999999999999999999999999999999888887777777766665554444433
Q ss_pred H
Q 014879 382 N 382 (416)
Q Consensus 382 N 382 (416)
+
T Consensus 88 ~ 88 (92)
T PF03131_consen 88 L 88 (92)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.76 E-value=9.8e-05 Score=72.89 Aligned_cols=48 Identities=33% Similarity=0.529 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 328 RiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
..++||++|.+||+||.++|..||.+|..|..+|..|...+..|.+.+
T Consensus 210 krlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 210 KRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 368999999999999999999999999999999988887777655433
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.42 E-value=0.001 Score=66.54 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=45.1
Q ss_pred ccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 320 LSDPKRAKRI-LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAG 377 (416)
Q Consensus 320 l~DpKR~KRi-LkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~ 377 (416)
.+++|+.+|+ +.|..+|.|.|+||++-.+.|+.+++.|+.+|.+|+.|+..|++++.-
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666664 455567999999999999999999999988888888887776644433
No 11
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.31 E-value=0.00053 Score=74.08 Aligned_cols=86 Identities=27% Similarity=0.310 Sum_probs=66.3
Q ss_pred hHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 303 DAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN 382 (416)
Q Consensus 303 ~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN 382 (416)
-++.+..++.-+|.|.-+.=-+=+||.=|||.+|+++|+||..-|..||..|..|+.|..+|..+- ..+.++.
T Consensus 469 ~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er-------~~~d~~L 541 (604)
T KOG3863|consen 469 VDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER-------DELDSTL 541 (604)
T ss_pred HHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 444555556666665444445678888999999999999999999999999999999887765544 3456777
Q ss_pred HHHHHHHHHHHHH
Q 014879 383 NELKFRLQAMEQQ 395 (416)
Q Consensus 383 ~ELK~RLqaLEqQ 395 (416)
.++|++|..|.+.
T Consensus 542 ~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 542 GVMKQQLSELYQE 554 (604)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888765
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.18 E-value=0.0032 Score=56.94 Aligned_cols=84 Identities=24% Similarity=0.321 Sum_probs=56.1
Q ss_pred ChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381 (416)
Q Consensus 302 s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE 381 (416)
|--|+++-+-.-.-.||. -.|..||-|+||=.|+-+|-|+.+.-.+||.+-..| ..||..|.+++..|..|
T Consensus 33 SVReLNr~LrG~~reEVv--rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L-------~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 33 SVRELNRHLRGLSREEVV--RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAEL-------QQQVEKLKEENSRLRRE 103 (135)
T ss_pred hHHHHHHHhcCCCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 344555544433334443 358888999999999999999999888887755554 44555555555556666
Q ss_pred HHHHHHHHHHHHH
Q 014879 382 NNELKFRLQAMEQ 394 (416)
Q Consensus 382 N~ELK~RLqaLEq 394 (416)
-.-|+.+.++|..
T Consensus 104 ~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 104 LDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666644
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.94 E-value=0.0049 Score=60.55 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381 (416)
Q Consensus 321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE 381 (416)
.|++-..|.-+|=++|+|||.+.++-..++..+|..|+.||..|+.+|..|+.++..|..-
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454455556899999999999999999999999999999999999998877666655543
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.48 E-value=0.014 Score=50.81 Aligned_cols=50 Identities=34% Similarity=0.443 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
..+.+||.++..|..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999999999876
No 15
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.44 E-value=0.071 Score=47.38 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
+.++|+.++..+..++..|...+..|+.++..+..+...++.+...++.+.+-....+...++|+++|
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433333333333333333333333334444443
No 16
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.39 E-value=0.016 Score=50.80 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
..+..||.++..+..+...|+.+++.|..+++.|..||..|+.+|..+++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999999999998854
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.29 E-value=0.1 Score=42.61 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
+-++.||.||+.+-...+.|..++..|+.++..|..+|.+|+...+.|.+.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999888888888888888777654
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.95 E-value=0.11 Score=41.98 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL~ 414 (416)
.||..|..|+..+..+..++...+..+..|..|+...-.+|+..... .+|+ +.+++|+.|++.++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk-~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLK-EENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 47888899999999999999998888888988888888887765444 5677 77888888877654
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.93 E-value=0.095 Score=50.12 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 014879 357 LQTEATTLSAQVT 369 (416)
Q Consensus 357 LqsENs~Ls~Qlt 369 (416)
|+.+|.+|..+++
T Consensus 137 L~~~n~~L~~~l~ 149 (206)
T PRK10884 137 LKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 20
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.59 E-value=0.27 Score=45.79 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=55.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
.+.+++..+.+.+..-+.-.......|.+++.-++.|+.|...|..++..++.++..|..||.+|-.|.
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666777888999999999999999999999999999999999999997664
No 21
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.36 E-value=0.79 Score=41.88 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=64.8
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 318 IALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 318 lAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
-+..=++-+.....|++.+-+--+-+++.|..|+.++..+..+...|...+..+..+...|..+-.+.+.||..|+.-
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345566667889999999999999999999999999999999999999988888888888888888888877754
No 22
>PRK09039 hypothetical protein; Validated
Probab=95.20 E-value=0.53 Score=47.92 Aligned_cols=66 Identities=26% Similarity=0.234 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhc
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--------AQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--------aqLrdALnEaL~~EvqrL~q 415 (416)
|+.++..++.+.+....++..|+++...|..+...|...|.+.|++ +.|+..|+.+|.++++.|.+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555554443 35566777777776666654
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.75 E-value=0.51 Score=38.60 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.+=..+..|+.|+..|..++..|..++..|..||..|+..-.+.
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555666666665444443
No 24
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=94.53 E-value=0.85 Score=45.55 Aligned_cols=89 Identities=24% Similarity=0.283 Sum_probs=69.4
Q ss_pred hhhHhhhhccCHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 312 NEKLAEIALSDPKRAKRILANRQSA--ARSKERKMRY-ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR 388 (416)
Q Consensus 312 ~~~LaElAl~DpKR~KRiLkNRESA--rRSReRKk~Y-leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R 388 (416)
=+.|+--...+.||+|-..+-.-+- ++.|+-+++| |.+|+.+-+.|+.||..|+++...|-.+++.|..+..+|++.
T Consensus 61 L~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred hcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444456788888665543332 3344556665 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014879 389 LQAMEQQAQLKD 400 (416)
Q Consensus 389 LqaLEqQaqLrd 400 (416)
|-.+.||.+...
T Consensus 141 l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 141 LAELKQQQQHNT 152 (292)
T ss_pred HHhhHHHHHHhh
Confidence 999998877663
No 25
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.46 E-value=0.35 Score=39.22 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.++-|.++++..+.+|..|..+-.....+......+|.+|+.++.+|.++
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666555555666666666666666655544
No 26
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.46 E-value=0.28 Score=39.73 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
|+.|=...+.|+.||..|..++..++.+...|...|..-+.||++|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566666666666666666666666666555666555
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.34 E-value=0.3 Score=45.72 Aligned_cols=53 Identities=28% Similarity=0.411 Sum_probs=43.5
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQ---KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 344 k~YleELE~---KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
..|+..|.. ..+.++.||..|..+++.|+.++..|..||..|+.+++.+++..
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556654 47788889999999999999999999999999999998887764
No 28
>PRK11637 AmiB activator; Provisional
Probab=94.29 E-value=1.5 Score=45.31 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
+..+...|......+..-...+.+|+...+.++.+...|..+....+.....|..+..++...|..|+++
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~ 241 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRAN 241 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444444444444444444444444444444444443
No 29
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.24 E-value=0.93 Score=43.58 Aligned_cols=69 Identities=25% Similarity=0.203 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME---------------------QQAQLKDGINSF 405 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE---------------------qQaqLrdALnEa 405 (416)
..-|..+|..|+.||.+|......|+.++..|..++..|+.+|-..+ ....--.++++-
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999988872211 111222377788
Q ss_pred HHHHHHHhhc
Q 014879 406 LLFYYLLLLH 415 (416)
Q Consensus 406 L~~EvqrL~q 415 (416)
|+.|+-||++
T Consensus 177 LR~e~s~LEe 186 (193)
T PF14662_consen 177 LRLEKSRLEE 186 (193)
T ss_pred HHHHHHHHHH
Confidence 8888888863
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.23 E-value=0.6 Score=37.84 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
+..||.||..|-.....|..++..|..+...+..|+..|..+.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888854443
No 31
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=94.16 E-value=1.3 Score=37.27 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+++.+.|.+=+++-.-|.-+.+-..+||.+|+.|....+.|-.++.....++..|..-|.++..||...
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777999999999999999999999999999999999999999999764
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.12 E-value=0.24 Score=39.60 Aligned_cols=52 Identities=29% Similarity=0.289 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.|.+||.++..++.-...|...++..+++...|..+.+.|..||..++...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 55 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPS 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5689999999999999999999999999999999999999999999987443
No 33
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.03 E-value=0.72 Score=38.81 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
+-++.||.||+..-...+-|..+|..|..++..|..|+..+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888776666666666666666666666665553
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.96 E-value=1.2 Score=42.82 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ 397 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq 397 (416)
+...+|+.+++.+..+...|..++..|++++..+.+|+..|+.+++.+....+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555444444444333
No 35
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.86 E-value=1.2 Score=47.13 Aligned_cols=73 Identities=26% Similarity=0.326 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
|+++-+.++=+.-.++....++....||.+++.++++..++..++...+.+...+...+..+..+|+.|+.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5666665555555555566677788999999999999999999999999999999999999999999998886
No 36
>PRK00295 hypothetical protein; Provisional
Probab=93.76 E-value=0.46 Score=38.21 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
.|.+||.++...+.-...|...++..++++..|..+.+.|..||..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999999999999999988888875
No 37
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.72 E-value=1.5 Score=48.37 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 014879 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQ------------------------TEATTLSAQVTILQRDSAGLTSE 381 (416)
Q Consensus 326 ~KRiLkNRESArRSReRKk~YleELE~KVq~Lq------------------------sENs~Ls~Qlt~Lqre~~~L~sE 381 (416)
+.-.++|.+.--+-...+...|.+||.+++.++ +.|..|+.|++.|+..+..|.++
T Consensus 103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555554444566677777777666655 45778889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014879 382 NNELKFRLQAMEQQ 395 (416)
Q Consensus 382 N~ELK~RLqaLEqQ 395 (416)
|.+|+..|++-...
T Consensus 183 ~~elt~~lq~Eq~~ 196 (617)
T PF15070_consen 183 NMELTSALQSEQHV 196 (617)
T ss_pred hhHhhHHHHHHHHH
Confidence 98888777764433
No 38
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.65 E-value=2.7 Score=39.86 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
......+..+.+++.++..|+.+...+..++...+++...+..++...+..+.
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555544444
No 39
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.60 E-value=2.5 Score=42.71 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q 415 (416)
...-.++..+.+.+||.+...|..|...|..+...++++-...-.+.+.++.++..++++.+.-.+..+....++.+|+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666677777777777777777777777766666777777777766666666655555666777777777764
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.59 E-value=3.5 Score=40.79 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+..|+..++.++.+..+|..++..|..+...|..+...|+.++..++.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555444444443
No 41
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.58 E-value=0.99 Score=40.83 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 014879 384 ELKFRLQAMEQQ 395 (416)
Q Consensus 384 ELK~RLqaLEqQ 395 (416)
.|..||+.||.+
T Consensus 77 ~l~rriq~LEee 88 (143)
T PF12718_consen 77 QLNRRIQLLEEE 88 (143)
T ss_pred HHHhhHHHHHHH
Confidence 344444444444
No 42
>PRK00736 hypothetical protein; Provisional
Probab=93.50 E-value=0.48 Score=38.09 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
..|.+||.++..++.-...|...|+.-++++..|..+.+.|..||..++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999988887765
No 43
>PRK02793 phi X174 lysis protein; Provisional
Probab=93.50 E-value=0.46 Score=38.62 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+.|.+||.++...+.-...|...|+..+++...|..+.+.|..||..++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57899999999999999999999999999999999999999888887753
No 44
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=93.49 E-value=2.7 Score=39.95 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381 (416)
Q Consensus 323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE 381 (416)
-+-++.+|....+-+..+.+.+.+...||.++..-..++..+..++..|++....|..+
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666667777777777777666444444444444444444444443
No 45
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.47 E-value=0.31 Score=43.25 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA--MEQQA 396 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa--LEqQa 396 (416)
..+.+||.++-.|-+|...|++++..|-.+++.|.-||..|+.||.. ++..+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~ 61 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTA 61 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence 45789999999999999999999999999999999999999999987 55443
No 46
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.46 E-value=0.37 Score=51.50 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQR-------DS-AGLTSENNELKFRLQAME 393 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqr-------e~-~~L~sEN~ELK~RLqaLE 393 (416)
+|+.+++.|..+|..|.++++.|++ +. ..|..+..+|.++.+.|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~ 122 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLK 122 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444444444444433 32 233355555555555443
No 47
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.44 E-value=1.1 Score=49.71 Aligned_cols=71 Identities=27% Similarity=0.299 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhc
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD---GINSFLLFYYLLLLH 415 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd---ALnEaL~~EvqrL~q 415 (416)
+++..|..+++.|+.+...|..++..++++++....++..+..+|..++....-+. .++..|+.||+.|++
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33899999999999999999999999999999999999999899988888777666 889999999999986
No 48
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.44 E-value=0.63 Score=38.73 Aligned_cols=45 Identities=27% Similarity=0.373 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
|.-|.-.|..|..+|+.|..+...++.....|..||..||+.-..
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555566666555544333
No 49
>PRK04325 hypothetical protein; Provisional
Probab=93.41 E-value=0.48 Score=38.70 Aligned_cols=48 Identities=21% Similarity=0.143 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
.|.+||.+|...+.-...|...|+.-++++..|..+.+.|..||..++
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 499999999999999999999999999999999999999988887765
No 50
>PRK11637 AmiB activator; Provisional
Probab=93.27 E-value=2.9 Score=43.17 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
.+..|+.++..++.+...+..++..++.+...+..+..+++.+|
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333333
No 51
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.66 Score=51.08 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
..+..|+.+|+.|+.||..|...+..+++++.+|..+..+++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888888888777765543
No 52
>PRK02119 hypothetical protein; Provisional
Probab=93.21 E-value=0.53 Score=38.39 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
..|.+||.++...+.-...|...|+.-+++...|..+.+.|..||..++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999999888888887765
No 53
>PRK04406 hypothetical protein; Provisional
Probab=93.12 E-value=0.54 Score=38.63 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
..|.+||.++..++.-...|...++..++++..|..+.+.|..||..++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4688999999999999999999999999999999988888888887764
No 54
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.05 E-value=0.84 Score=43.88 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK 399 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr 399 (416)
.|++|+.--+.|..||..|...+..+...+..|..|+..|+.+++.+.|-.+..
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777777777777777775544444
No 55
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.03 E-value=0.66 Score=38.88 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
++|..++..||.....|..++...+.++..|..||.-|...|..|-...
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778899999999999999999999999999999999999999885443
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.01 E-value=2.4 Score=47.42 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=29.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQ-SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372 (416)
Q Consensus 329 iLkNRE-SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq 372 (416)
.|.||. ..-++|++=++-|..||+++...+..-+.|.+||...+
T Consensus 471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 55667777777778888877777776666666666554
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.96 E-value=5.2 Score=36.66 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 357 LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLL 412 (416)
Q Consensus 357 LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Evqr 412 (416)
|+.+...|...+..|..+...+..|+..|.+.++.+..+..--+.++.-+..-++.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444555555555566666555555555544333444444444433
No 58
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.88 E-value=4.8 Score=38.77 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
|+.++..|+.|...|..++..+++....+..+..+|+.++..++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444433
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.82 E-value=1.6 Score=47.86 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 341 eRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
.+=+.|+.+++.+-+.+......|..++...+.++..|..+|.+||.+|..
T Consensus 276 nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 276 NKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999999999999877643
No 60
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.74 E-value=1.8 Score=50.24 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQSAARSKER----KMRY------ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL 398 (416)
Q Consensus 329 iLkNRESArRSReR----Kk~Y------leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL 398 (416)
+|+++..|+|.|.- +..| ..+...+++.|+.|...+..++..++..+..+...+..|+.+++.++...+.
T Consensus 415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776532 1222 2233344444444555555555555555554444445555554444444333
No 61
>PRK00846 hypothetical protein; Provisional
Probab=92.47 E-value=0.8 Score=38.16 Aligned_cols=50 Identities=18% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
.++|.+||.++...+.-...|...++..++....|..+.+.|+.||.+++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999999999999999988886
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.46 E-value=3.1 Score=48.48 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 335 SAARSKERKMRYISELEQKV-QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 335 SArRSReRKk~YleELE~KV-q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
..+....+..+.|.+++.++ +.++.+..++..++..|++++..|..++..|+..++.+.+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555 4455555555555555555555555555555555554433
No 63
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.43 E-value=1.6 Score=40.68 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL 413 (416)
..|+.++..|..+...+..-+..|+-++..|..+++.|..++..|+.. ..|-+-+-+.-..|+.+|
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444455555555555555555555555443 344444444444444443
No 64
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.38 E-value=2.9 Score=34.90 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+-++.||.||++.-.-.+-|..++..|...+..|..|.+++....++|++
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 34678888888776666666666666666666666666655555555554
No 65
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.31 E-value=0.43 Score=35.85 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 356 TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 356 ~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+|+.+...|......|..++..|..||..|+.+++.|..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777777777777766643
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.30 E-value=2.3 Score=47.44 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR 388 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R 388 (416)
-+-+..+.++|+.|...|+.++...++++..|+.|..+|+..
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777888888877777777777777777766553
No 67
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.26 E-value=0.59 Score=50.08 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
-..+||++++.|+.|.+.|.++...+++++..|..||..|+.++.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999998888543
No 68
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.15 E-value=2.2 Score=35.04 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSA--------GLTSENNELKFRLQAMEQQAQL 398 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~--------~L~sEN~ELK~RLqaLEqQaqL 398 (416)
+.+.|..+..|+.||=.|.-+|-.|++... .+..||-+||..+..|....+-
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999988776 4577888888888877666443
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.10 E-value=7.3 Score=38.59 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 014879 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRD---------SAGLTSENNELKFRLQA 391 (416)
Q Consensus 321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre---------~~~L~sEN~ELK~RLqa 391 (416)
.-++-++.+..-.+.+.+.-.-++.-+++|+.+|..++.+.+.++.++..++.. +..|..|...++.|+.+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777778888888888888888888887777766543 34444555555555555
Q ss_pred HHHH
Q 014879 392 MEQQ 395 (416)
Q Consensus 392 LEqQ 395 (416)
|+.+
T Consensus 108 le~e 111 (239)
T COG1579 108 LEDE 111 (239)
T ss_pred HHHH
Confidence 4443
No 70
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=92.00 E-value=2.5 Score=36.05 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879 356 TLQTEATTLSAQVTILQR------DSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 356 ~LqsENs~Ls~Qlt~Lqr------e~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q 415 (416)
.+..+|..|..+|..|+. +.+....||..|+.++..+..-. ...-.|++-.||..|+.
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 445566666666666664 45788899999998888776554 33567888889988863
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.83 E-value=5.6 Score=38.95 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
.+=+..-.+|.|++.....|..|-..+..+|....+++..|....+.++..-.......+........|+.||.+|+
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444558899999999999999999988888888888888887777766665555554444445555566665554
No 72
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=91.80 E-value=1 Score=38.84 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDG 401 (416)
Q Consensus 352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdA 401 (416)
..+..++.+...+..++..++.++..+...|.+|-..++.|..+..-...
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34556667777777777777777777777777777777776665544433
No 73
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.77 E-value=1.8 Score=37.35 Aligned_cols=53 Identities=34% Similarity=0.413 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTL--SAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK 399 (416)
Q Consensus 347 leELE~KVq~LqsENs~L--s~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr 399 (416)
+.+++.+++.++++...| ...+..|+-+...+.-+-+.|..+|+.+..+..|-
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666666 66666666666677777777777777776665543
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.67 E-value=7.4 Score=37.50 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK 386 (416)
Q Consensus 337 rRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK 386 (416)
...++.-.+.+..|+.+++.|+..|..|..+++.++++...|..+..++.
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555555443
No 75
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=91.54 E-value=7 Score=34.57 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=40.8
Q ss_pred cChHHHHhhhhhhh-HhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 301 FNDAELKKIWANEK-LAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT 379 (416)
Q Consensus 301 ~s~~e~kKi~~~~~-LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~ 379 (416)
.|..|++.++.++. +.++...-+ .++.+...++....+-+.=.+....++.++..+..+...+...+..|+.++..+.
T Consensus 4 lS~~eL~~Ll~d~~~l~~~v~~l~-~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 4 LSTEELQELLSDEEKLDAFVKSLP-QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp -TTHHHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777664 444443222 2444445555555544444455555555555555555555555555555555555
Q ss_pred HHHHHH
Q 014879 380 SENNEL 385 (416)
Q Consensus 380 sEN~EL 385 (416)
.+-..+
T Consensus 83 ~~~~~l 88 (150)
T PF07200_consen 83 QQQDEL 88 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.29 E-value=5.2 Score=43.82 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSA 376 (416)
Q Consensus 329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~ 376 (416)
+++-..........-+..++.|+..+...+.++..|..+...+.....
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e 202 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSE 202 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444333333333
No 77
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.18 E-value=3.5 Score=39.20 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 339 SReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.+.++-..|.+||.++-.|+.+...+..+......++..|..+...|++.+..++.+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777777777777777777666666666666666666666666665543
No 78
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.01 E-value=3.9 Score=41.61 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
++-+++=..++..|+.||+.|......|++..+.|..+...=..+|.-||.|..---...+.|..|+.|++
T Consensus 52 KqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 52 KQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566677777777777777777777776666666666677777776555567778888887764
No 79
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.84 E-value=1.6 Score=46.96 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 357 LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 357 LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
|-.+..+++.++..|..++..|..||..|++|.+.+.+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33344444444444444444444455444444444433
No 80
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.83 E-value=2 Score=36.23 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
-|.=|.-+|..|+.+|..|..++..+......|..||..||+.-...
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777766666667777777776665555
No 81
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.82 E-value=6.2 Score=40.07 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 014879 327 KRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD------ 400 (416)
Q Consensus 327 KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd------ 400 (416)
.+.+.-|+--....+--.+|-.+||.++.+|++.|..|...+..|.-+...+...... +++|...|..+|+|
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~--q~~q~y~q~s~Leddlsqt~ 104 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED--QRVQFYQQESQLEDDLSQTH 104 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777788888899888888888877766665554433333221111 12333333333433
Q ss_pred HHHHHHHHHHHHhhc
Q 014879 401 GINSFLLFYYLLLLH 415 (416)
Q Consensus 401 ALnEaL~~EvqrL~q 415 (416)
|+-|.|+.-|..|+|
T Consensus 105 aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 105 AIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666667777776765
No 82
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.74 E-value=3.8 Score=43.88 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ----AQLKDGINSFLLF 408 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ----aqLrdALnEaL~~ 408 (416)
--.++.|+.++++|+.||+.|+..++-|...+..|..+.+.+..+|+++..| .+++.-.+++|+.
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999999999998888888877665 2444445555443
No 83
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.57 E-value=2.9 Score=42.26 Aligned_cols=51 Identities=25% Similarity=0.437 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.-+.+++.+++.|+.|...|..++..|+++...|..|..+|+.++..++++
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666666666666666666555443
No 84
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.54 E-value=9.2 Score=32.08 Aligned_cols=48 Identities=33% Similarity=0.524 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQR---DSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqr---e~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+|..+++.|+.+-..++.++..+.. +...|..+-.+|+.++..++.+.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666555 35667777778888887777653
No 85
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.47 E-value=6 Score=37.29 Aligned_cols=65 Identities=26% Similarity=0.261 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ-Q-AQLKDGINSFLLFYYLL 412 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq-Q-aqLrdALnEaL~~Evqr 412 (416)
..+|+.++..|+.++..|..++..|+.++..+...+.++++...+..+ + ..|+ ..|..|+.++.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk-~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK-KQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 467777778888888888888888877777777776665443333211 1 2233 335555555443
No 86
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.24 E-value=8.6 Score=46.53 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRY-------------ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~Y-------------leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
++++.+-+.++.|.+.+.-+.++ +++|+.+++..+.+...+..++..++.+...+..+...|+.+++
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655544332 23333444444444444444444444455555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014879 391 AMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 391 aLEqQaqLrdALnEaL~~EvqrL 413 (416)
.+++...........++..+++|
T Consensus 401 elqqel~elQ~el~q~qq~i~~L 423 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333344444444444
No 87
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.24 E-value=6.6 Score=40.03 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 327 KRILANRQSAARSKERKMRYISELEQK-------VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK 399 (416)
Q Consensus 327 KRiLkNRESArRSReRKk~YleELE~K-------Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr 399 (416)
.-|..+-+--.+-|+-|+=.|+.||.- |..-..+.+.|..++..|...|..|..-+..|...|+.-|.|+..-
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 344445555556677777888888864 4444455566667777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhc
Q 014879 400 DGINSFLLFYYLLLLH 415 (416)
Q Consensus 400 dALnEaL~~EvqrL~q 415 (416)
++.....+..|.+|.|
T Consensus 101 EgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 101 EGQLNSCKKQIEKLEQ 116 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888888765
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.19 E-value=9.3 Score=40.90 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
|+.-|+.+.+..-+-.-+-=++.+.++|..++.||.||..|..+........
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444333222223355678899999999999999887766544333
No 89
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=90.15 E-value=3.3 Score=37.35 Aligned_cols=62 Identities=13% Similarity=0.003 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
...+.|+........++..|+.++.........-...|+.|+..++......+.....++.+
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 33444444444555555556666666666655555666666666555545444444444333
No 90
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.97 E-value=7.8 Score=34.37 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL 398 (416)
Q Consensus 329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL 398 (416)
+..-.+...-|+..=...-++|+..++.|+.++..+...+..|+.++..+...... .++..|+.+.++
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~~l~~r~ 88 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKLELESRL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33344444445444444445555555555555555555555555555555444333 233344444333
No 91
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=89.69 E-value=0.015 Score=59.84 Aligned_cols=62 Identities=31% Similarity=0.343 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014879 320 LSDPKRAKRILANRQSAAR---SKERKMRYISELEQKVQTLQ-TEATTLSAQVTILQRDSAGLTSE 381 (416)
Q Consensus 320 l~DpKR~KRiLkNRESArR---SReRKk~YleELE~KVq~Lq-sENs~Ls~Qlt~Lqre~~~L~sE 381 (416)
..+.|+..|..+|+.+|.+ +|.||+.+..+|+.+|+.|+ .++..|..++..|+.+.+.+..+
T Consensus 150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~ 215 (395)
T KOG1414|consen 150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKE 215 (395)
T ss_pred cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHH
Confidence 3567899999999999999 99999999999999999999 88888877777777666555443
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.65 E-value=12 Score=36.43 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 361 ATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 361 Ns~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
+..++.++..|+.++..|...|..|..+|
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 33333333333333333333333333333
No 93
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=89.60 E-value=6.4 Score=46.01 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
-|.++-+|-||.- --.|+...+.+|..+.+++......+..++..|.+....|..||..|..+|+.|.+
T Consensus 490 iknlnk~L~~r~~---elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDL---ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444555555432 22344455555555555555555555555555555555666666666555555544
No 94
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.54 E-value=2.9 Score=42.75 Aligned_cols=52 Identities=42% Similarity=0.490 Sum_probs=37.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 014879 348 SELEQKVQ---TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM-EQQAQLK 399 (416)
Q Consensus 348 eELE~KVq---~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL-EqQaqLr 399 (416)
++|..|.. ..+.|.+.|..|+..||+++..++.||.+|.+.|+.. +.|.+|.
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~ 275 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ 275 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444433 4567788899999999999999999999999888764 3344443
No 95
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.48 E-value=20 Score=34.17 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT 379 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~ 379 (416)
..+++.+++-+.-+.+=..-+..+..++.++..|+-|+..|..++..++++...|.
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555555555555566666666666666666666666555555544
No 96
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.47 E-value=9.1 Score=42.00 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
.++.|+.+.+.+...+..|..+...|..++..+.....+|...+..|.++.
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444444444544444444443
No 97
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.45 E-value=15 Score=32.70 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
=+..|+.......++..-++.|+..++.|+.++..+..++..++.+...|..+++.+
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555444444444444444444444444333
No 98
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=89.36 E-value=12 Score=31.60 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 014879 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA-MEQQAQLKDGIN 403 (416)
Q Consensus 326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa-LEqQaqLrdALn 403 (416)
+.++-..+......=..|+.-+..||.++..|..|.+.-..++-.+.+....|..|++.|+..+.. -+-..+|++..+
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~ 83 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345566667777777788888999999999999999999999999999999999999999887755 555567776433
No 99
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=89.33 E-value=0.59 Score=43.84 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI 402 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL 402 (416)
|+++|.|+.+.-.+|.-|..+|. +...|..+++.||..+..|.|...+++.+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999988888873 34556666666666666666555555443
No 100
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.19 E-value=17 Score=34.61 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 340 ReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
..+++..+..|+.+++.++.+...++.++..++..+
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333
No 101
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.18 E-value=21 Score=34.89 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
..|+.+...++.++..|..+....+.+...|..+..++...+..|++..+-++...+.|+.++...
T Consensus 50 ~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 50 EELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666777777777777777777777777888888888888888888888888888777654
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=4.1 Score=46.60 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=8.0
Q ss_pred cCCCCCCCCCCCC
Q 014879 42 LDSLPPLSPSMSS 54 (416)
Q Consensus 42 ~dsLpPlsp~~~~ 54 (416)
++.++||+|-.+.
T Consensus 115 ls~~qpL~~a~p~ 127 (1118)
T KOG1029|consen 115 LSYSQPLPPAAPR 127 (1118)
T ss_pred cCcCCCCCccccc
Confidence 5666777755444
No 103
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.05 E-value=9.6 Score=44.02 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=59.2
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 316 AEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 316 aElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
++-++.|..++|--++-+...|---++-+.-++++|.+....+.....|...++.|.+....|...+.....+++.-++
T Consensus 381 ~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 381 AQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666666666666667899999999999999999999999998888888888887777655443
No 104
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.99 E-value=2.7 Score=36.72 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+|=.++..|+.....|..++..|+.+...|..||.+|+..-+.|..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888888888888888766665543
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.83 E-value=4.4 Score=40.70 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+.++..|..++..+..+...++.++..|+.+...+..+..+++.+.+.+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555554444443
No 106
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.72 E-value=8.1 Score=40.47 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 339 SReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
-=.|-+..+..||.-+..+..||..|..|+..+.+++-....|+.+|...|
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 345667778889999999999999999999999999988888877775444
No 107
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.61 E-value=5.3 Score=45.89 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
|..|..+.+.|++|.+.|...+..+|.+...-..|..++..|+..+++
T Consensus 108 iriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 108 IRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.49 E-value=4.7 Score=44.75 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL---KFRLQAMEQQAQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL---K~RLqaLEqQaqLrdALnEaL~~EvqrL~ql 416 (416)
..+.+|+..+..|+.++..|..++..+.++...=...+.++ ..++..|+...+=+....|.|+.++.+|++|
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444333333333 3445555555555555566677777666643
No 109
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=88.43 E-value=6.4 Score=41.23 Aligned_cols=46 Identities=33% Similarity=0.502 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQR---DSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqr---e~~~L~sEN~ELK~RLqaLEqQ 395 (416)
|..+++.|+.+-+.++.++..+.. +...|..|-++|+.+|..++.+
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 88 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAE 88 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544221 2335666667777777776654
No 110
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.27 E-value=2.8 Score=40.95 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
+++.+++++..|..|...++.+++.|..|++.|+.++
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444333
No 111
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=88.21 E-value=2.5 Score=42.95 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
+.|-|.+++.=++|...|+.||..+++++
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777776666554
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.17 E-value=7.4 Score=42.69 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 334 ESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
+.|.+.+..=.+-+.+++..+..+++|...+...+..|+.+...|..||..|...|+.+..+
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34545555555556667777778888888888888888888888888888887777766543
No 113
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=88.15 E-value=6.3 Score=40.68 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=54.7
Q ss_pred ccChHHHHhhh--hhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Q 014879 300 EFNDAELKKIW--ANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTE-----------ATTLSA 366 (416)
Q Consensus 300 ~~s~~e~kKi~--~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsE-----------Ns~Ls~ 366 (416)
+.+-..||.+. -+-.|...-....++.|++|++|...-..=+||...+.-=+..+++|..- ......
T Consensus 96 ~qdl~~Mk~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D 175 (323)
T PF08537_consen 96 EQDLTRMKNACTNINSRLPNRERKSGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSD 175 (323)
T ss_pred HHHHHHHHHHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchh
Confidence 33334455554 22223333333445667899999988888778865554445566665521 111235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
++.+||.+++.|..+..++..+|+.+...
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~ 204 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKD 204 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777766666666666666666655433
No 114
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.08 E-value=12 Score=35.73 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 366 AQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 366 ~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.++..++.++..|.-|+..|.+|+..+++.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555554444444443
No 115
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.04 E-value=3.7 Score=46.55 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhcC
Q 014879 369 TILQRDSAGLTSENNELKFRLQAMEQQAQLKDG---------------------INSFLLFYYLLLLHL 416 (416)
Q Consensus 369 t~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdA---------------------LnEaL~~EvqrL~ql 416 (416)
..|+.++..+..||..||-.|..+..+..||-. -.-.|.+|-|||+.|
T Consensus 137 ~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 137 EDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444443321 223577888888754
No 116
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.77 E-value=3.4 Score=36.45 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.+|=.+|..|+.....|..++..|+.+...|..||..|+..-+.|
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888888888888886554444
No 117
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.77 E-value=3.3 Score=41.86 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLL 412 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Evqr 412 (416)
+.+.+.+++..+.+...+..++..|+.++.....|...|+.+++..+....-...|.+.|..|..|
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R 295 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKER 295 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
Confidence 344555555566666666666777777777777777777777777776666666777777777665
No 118
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.75 E-value=7.1 Score=34.83 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
||.++..|+.++..|..+-..+..++..|+.+|.++
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 119
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=87.66 E-value=0.73 Score=39.88 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS---ENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s---EN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q 415 (416)
....++|..+..++.|...|.+.| .++-+.++.. +...+..++..|+.+..=.+.+.+.|+.+|..|..
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666677766666654 1222333322 33345555666666655555777777777776654
No 120
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.53 E-value=3.2 Score=34.45 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.|.+||.++..-+.-...|...++..+.....+..+.+-|-.|+..++.++
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4688999999999999999999999988888888888888888888776543
No 121
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.44 E-value=2 Score=45.28 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL 398 (416)
Q Consensus 333 RESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL 398 (416)
-+.|+--|+|-.+.-...|..+..+..|...|++++..++....+|..|+..||.-+..+|-..|.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 357788889999999999999999999999999999999999999999999999988888766543
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.90 E-value=3.2 Score=37.68 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQV--TILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Ql--t~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.+..+.+|+..+..|+.|...|...+ ..|......|..|+.+|..||+.|...
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777777777777765 567778888888888888888888763
No 123
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.88 E-value=5.3 Score=33.53 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 014879 331 ANRQSAARSKERK------MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS---ENNELKFRLQAMEQQAQLKDG 401 (416)
Q Consensus 331 kNRESArRSReRK------k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s---EN~ELK~RLqaLEqQaqLrdA 401 (416)
.|.+..+.+-.++ ...+.+|..+...++.+...|.++-..+.++...+.. +-.+|+.++..+..+..--+.
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554444 3556677777777777777888877777777777776 356777777777777665556
Q ss_pred HHHHHHHHHHHhh
Q 014879 402 INSFLLFYYLLLL 414 (416)
Q Consensus 402 LnEaL~~EvqrL~ 414 (416)
....+..+++.+.
T Consensus 89 ~~~~~e~~l~~~l 101 (108)
T PF02403_consen 89 QLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666677766653
No 124
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.87 E-value=2.6 Score=31.73 Aligned_cols=42 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
.||+....|......|......|.+++..|..|...|+.+++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467777777777788888888888888888888887777665
No 125
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.64 E-value=9.9 Score=36.18 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI 402 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL 402 (416)
.+.+..|+.++..++.....|..++..|++++..+......|+.|++....+.++...+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~ 156 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888999999999999999999888888888877776665544
No 126
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.63 E-value=7.7 Score=38.81 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
..-..|-.++..|..++..++.+...|..||..|...+..+.
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 333333344444444444444444444445544444444443
No 127
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.60 E-value=14 Score=37.61 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHh
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN-------ELKFRL-QAMEQQAQLKDGI--NSFLLFYYLLL 413 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~-------ELK~RL-qaLEqQaqLrdAL--nEaL~~EvqrL 413 (416)
-+.+..||..+.++......|+.-|..|++.+..|..-.+ .+.+|| |++|.-+-|...| .+.|-++||||
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRL 169 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344455555555555555555555555555544443332 122333 3344444444333 24567778887
Q ss_pred h
Q 014879 414 L 414 (416)
Q Consensus 414 ~ 414 (416)
+
T Consensus 170 k 170 (333)
T KOG1853|consen 170 K 170 (333)
T ss_pred H
Confidence 5
No 128
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.58 E-value=13 Score=34.60 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 355 QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 355 q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
..++.++..|..++..|+.++..|....+.+..++..|+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 456667777777777777777777765555555544443
No 129
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=86.57 E-value=7.4 Score=43.68 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 014879 328 RILANRQSAARSKERKMRYISELEQ-KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-----AQLKDG 401 (416)
Q Consensus 328 RiLkNRESArRSReRKk~YleELE~-KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-----aqLrdA 401 (416)
-+|.-++.||.-|-|-.+.+.++.+ ++..-+...++=.-..+.|+.+...|++|..+||.++.+||.. .++|.
T Consensus 128 svLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~- 206 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRL- 206 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHh-
Confidence 4788889999888887776544432 2222222222222233889999999999999999999998833 45663
Q ss_pred HHHHHHHHHHHh
Q 014879 402 INSFLLFYYLLL 413 (416)
Q Consensus 402 LnEaL~~EvqrL 413 (416)
.|-|..||.++
T Consensus 207 -se~l~qevn~~ 217 (861)
T KOG1899|consen 207 -SENLMQEVNQS 217 (861)
T ss_pred -HHHHHHHHHHH
Confidence 34455566554
No 130
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=86.40 E-value=3.2 Score=35.48 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
|+-|-...|.+|..|+.++..|..++..|+.+......|.++|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 131
>PRK10698 phage shock protein PspA; Provisional
Probab=86.22 E-value=14 Score=35.54 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=55.1
Q ss_pred HHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 331 ANRQS-AARSKERKMR---YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI 402 (416)
Q Consensus 331 kNRES-ArRSReRKk~---YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL 402 (416)
++|+- |+..=.+|+. .+..|+.++...+.....|..++..|+..+..+......|+.|.+.-+.+.+++.++
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 3343444444 456788888888888888999999999999999999999999998888888777654
No 132
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.21 E-value=4.8 Score=44.28 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD 400 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd 400 (416)
..+-+++|+.+|+.|..+...+..++..++.....+..+..+.+...+.++++..++.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566665555555555555555555555555555555555555554443
No 133
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=86.15 E-value=6.1 Score=40.32 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014879 365 SAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLF 408 (416)
Q Consensus 365 s~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~ 408 (416)
+++-+.|.-++..|..+|.+||.|++.||.. .-||+++.|..++
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566777888888888888888888776 4567776666554
No 134
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.68 E-value=18 Score=34.55 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=18.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014879 335 SAARSKERKM-RYISELEQKVQTLQTEATTLSA 366 (416)
Q Consensus 335 SArRSReRKk-~YleELE~KVq~LqsENs~Ls~ 366 (416)
||+.-+.+.. ..+.+|..+++.|..||..|..
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444443 3456666666666666666554
No 135
>PF15294 Leu_zip: Leucine zipper
Probab=85.66 E-value=2.7 Score=42.45 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
|...+..|+.||..|+.++..++.++...+.|+..|+.+|..|.-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999988887765
No 136
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.66 E-value=37 Score=33.11 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQR 373 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqr 373 (416)
..+..|+.++..|+..|..|..+|..++.
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 33444555555555555555555544443
No 137
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.63 E-value=26 Score=31.22 Aligned_cols=62 Identities=27% Similarity=0.275 Sum_probs=41.5
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 330 LANRQ-SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 330 LkNRE-SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
+.||- +-.++.+--|.-.++|-.+-..|.+-+..|.+|...+.+++..|..+..++...|..
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 335666666666777777777777777777777777777777777777777666666
No 138
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.53 E-value=6.2 Score=37.28 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD--------GINSFLLFYYLLLL 414 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd--------ALnEaL~~EvqrL~ 414 (416)
++|=..+...|...|+-|+.|+......+..|..++..|...+..+.....+++ +++..+..|-.||+
T Consensus 69 LeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll 144 (182)
T PF15035_consen 69 LEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLL 144 (182)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 444455566666667777777777777777777777777666666544433332 44555555555543
No 139
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.46 E-value=12 Score=32.32 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTIL--QRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~L--qre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.-++.|+.++.......+.+..++..| ..+.+.|..+..+++-++..|+.+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4445556666666666666666666666 6666666666666666666665553
No 140
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=85.33 E-value=5.1 Score=39.88 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQRDSA----GLTSENNELKFRL 389 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~~----~L~sEN~ELK~RL 389 (416)
.+..|+.||.+|++|+..|+.+.. .+..||.+||.-|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777665533333 2666666665533
No 141
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=85.25 E-value=11 Score=39.37 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRD----SAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre----~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+|..+++.|+.|-+.++.++..+... .+.|..+-++|+.+|..++++.
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 92 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL 92 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777776654322 4577777788888888887664
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.92 E-value=5.9 Score=38.93 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+-+.+|..+++.|+.|...|+.+++.++.++..|....++|-..|..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999887777654
No 143
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=84.84 E-value=9.9 Score=36.86 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 014879 377 GLTSENNELKF 387 (416)
Q Consensus 377 ~L~sEN~ELK~ 387 (416)
.+..||.+|+.
T Consensus 97 ~l~~en~~L~~ 107 (276)
T PRK13922 97 QLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHH
Confidence 34445544443
No 144
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.83 E-value=20 Score=42.30 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQV-TILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINS 404 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Ql-t~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnE 404 (416)
+|..+...|..|+.+...+.++. ..++.+...+..+...|++++++|+.+ .+|++.+++
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444 444444445555555555555555544 345544443
No 145
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=84.81 E-value=6.6 Score=38.07 Aligned_cols=9 Identities=56% Similarity=0.608 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 014879 380 SENNELKFR 388 (416)
Q Consensus 380 sEN~ELK~R 388 (416)
.||++|+.+
T Consensus 76 ~en~~L~~e 84 (276)
T PRK13922 76 EENEELKKE 84 (276)
T ss_pred HHHHHHHHH
Confidence 333333333
No 146
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.71 E-value=29 Score=31.12 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ--QAQLKDGINSFLLFYYL 411 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq--QaqLrdALnEaL~~Evq 411 (416)
+|..|+.+...+..+++.+..++..+ +..++..|..+++ ...|+.++.+.++..+.
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~ 203 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDLKAALKEFARLQVQ 203 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333333 3344445555554 35566666666666554
No 147
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.61 E-value=14 Score=37.27 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+.+|+..++.++.+...|-.++..++.+...+..++.+++..|..+
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l 85 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL 85 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.59 E-value=8 Score=39.66 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 364 LSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLL 407 (416)
Q Consensus 364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~ 407 (416)
|...|..-..++.....|...|..+|..+++..+--.+.||-|.
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~ 261 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQ 261 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444444444444444555555555444444434444444
No 149
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=84.55 E-value=4.1 Score=40.50 Aligned_cols=40 Identities=28% Similarity=0.244 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879 374 DSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 374 e~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ql 416 (416)
....|..||.+||.++..|.++.+. +.+.|++|-+||++|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3345667777777666665333222 122256666666543
No 150
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=84.44 E-value=0.55 Score=40.10 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.||+.|...+..|..+|..|..++..|+.++..+..++..|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 588889999999999999999999988888888888877777665433
No 151
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=84.36 E-value=16 Score=35.46 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879 385 LKFRLQAMEQQAQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 385 LK~RLqaLEqQaqLrdALnEaL~~EvqrL~q 415 (416)
++.-|..+++|+..-+..-.-=+.|++.|+|
T Consensus 165 v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 165 VREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344455555543322222333677777765
No 152
>smart00338 BRLZ basic region leucin zipper.
Probab=84.21 E-value=4.2 Score=31.56 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.+..|+.++..|..+|.+|+.++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555443
No 153
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.09 E-value=32 Score=31.31 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 014879 357 LQTEATTLSAQVTI 370 (416)
Q Consensus 357 LqsENs~Ls~Qlt~ 370 (416)
+......+..++..
T Consensus 135 l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 135 LDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 154
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=83.58 E-value=0.19 Score=51.92 Aligned_cols=55 Identities=27% Similarity=0.475 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014879 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLS-AQVTILQRDSA 376 (416)
Q Consensus 322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls-~Qlt~Lqre~~ 376 (416)
|+++.+=+.+||.+|-++|.|||.++..|+.+...+..+|..|. .+++.|...+.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~ 338 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVK 338 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHh
Confidence 44553335599999999999999999999999999999999888 44444444433
No 155
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.55 E-value=16 Score=34.24 Aligned_cols=56 Identities=25% Similarity=0.362 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI 402 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL 402 (416)
+..|+..+..+......|..++..|+.++..+..+-..|+.|......+.++.+++
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~ 155 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEAL 155 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666777777777777777777777776666666666666544
No 156
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=83.54 E-value=14 Score=35.76 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 337 ARSKERKMRYISELEQKVQT---LQTEATTLSAQVTILQRDSAGLTSEN 382 (416)
Q Consensus 337 rRSReRKk~YleELE~KVq~---LqsENs~Ls~Qlt~Lqre~~~L~sEN 382 (416)
++...-+..|+..|+.++.. ++..++.|..++..|.+++..+..+.
T Consensus 160 a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 160 ARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556677777777766 77777777777777777666666665
No 157
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.51 E-value=13 Score=36.38 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
||.+...+.++...|..++...+.+...+..++..|+.+.+.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444444444444555555555555555555555555544443
No 158
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.49 E-value=4.3 Score=35.09 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014879 372 QRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 372 qre~~~L~sEN~ELK~RLqaL 392 (416)
++++..|..+|..|+.+++.|
T Consensus 40 ~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 40 QQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 159
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=83.39 E-value=2.4 Score=36.07 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014879 368 VTILQRDSAGLTSENNELK 386 (416)
Q Consensus 368 lt~Lqre~~~L~sEN~ELK 386 (416)
++..--++..|..||+.|+
T Consensus 46 vtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQ 64 (86)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555543
No 160
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.21 E-value=5.6 Score=38.05 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKF 387 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~ 387 (416)
++..|+.+-..+..++-.++..|..|..|..+||.
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444333333
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=9.1 Score=43.95 Aligned_cols=62 Identities=21% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
...+-..-.--+.+-.-.++.|.+++..|+.||..|.++++....++..|..++.-||.+|.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444555556677777788888888888888888888888888888888887776
No 162
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=82.99 E-value=7.1 Score=38.70 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGIN 403 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALn 403 (416)
+|.+-.++....++..-.+-+.....++.+...|..||..|+.+++.|.++ .+|++.+.
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444445555555556666666666665554 34454443
No 163
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.59 E-value=5 Score=39.57 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ 383 (416)
++...|||.++..++.+...|..++..|+.++..|-..-+
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666666666665555555554443
No 164
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.39 E-value=5.6 Score=34.38 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQR 373 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqr 373 (416)
+.++.+++++.+++.|+.+|..|..++..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455566666666666666666666665554
No 165
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=82.32 E-value=33 Score=34.71 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 328 RILANRQSAARSKERKMRYIS-ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406 (416)
Q Consensus 328 RiLkNRESArRSReRKk~Yle-ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL 406 (416)
+.|-.+.---++.-|-+...- +|........--..+|..++..|+++.....--..=||.+|..|-+.-+=|.-|...|
T Consensus 19 ~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~l 98 (277)
T PF15030_consen 19 QQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHL 98 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443332 3333333333333445555666666665555555667777777777766666666666
Q ss_pred HHHHHH
Q 014879 407 LFYYLL 412 (416)
Q Consensus 407 ~~Evqr 412 (416)
-+|+.|
T Consensus 99 lqel~R 104 (277)
T PF15030_consen 99 LQELHR 104 (277)
T ss_pred HHHHHH
Confidence 666655
No 166
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.26 E-value=8.2 Score=35.03 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDS--AGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~--~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.+|..++..|+.++..|..++..|.... ..|..+..+|+.++..|+...
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777766654 556666666666666666553
No 167
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=82.24 E-value=15 Score=39.49 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 014879 341 ERKMRYISELEQKVQT--------------LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA---------- 396 (416)
Q Consensus 341 eRKk~YleELE~KVq~--------------LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa---------- 396 (416)
.=|..|-+|||+.+.. ...+.+.+..++..|-+++..-.-||..|.+.+++-+|..
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL 468 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL 468 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4578888998887654 3456666777788888888888888888877665544321
Q ss_pred -HHHHHHHHHHHHHHHHhhcC
Q 014879 397 -QLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 397 -qLrdALnEaL~~EvqrL~ql 416 (416)
.-...||-.|.+||-||+.|
T Consensus 469 naHNQELnnRLaaEItrLRtl 489 (593)
T KOG4807|consen 469 NAHNQELNNRLAAEITRLRTL 489 (593)
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 11226788889999999754
No 168
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.15 E-value=16 Score=42.16 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
|+++|...++.+......|-.++..+++....|..||.+|+.+++.
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~ 696 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD 696 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444433
No 169
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.08 E-value=33 Score=40.49 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
+.+|+..++.+...+..-...+..-+++++.|..|-.+|+..++..+++..--....+.|+.|+-.|
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l 855 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNL 855 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555555555555556666666666666666666666665433334444445544433
No 170
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.05 E-value=20 Score=32.98 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSA---QVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLL 407 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~---Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~ 407 (416)
..|+.++.....+...|.. -+..|+.++..|..+|...+..+++--.+.++..||..+|.
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 34445555555556666444444444444445555555554
No 171
>PRK09039 hypothetical protein; Validated
Probab=81.90 E-value=51 Score=33.79 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
..+...+|..|+.|...|+.|+..|+..+..+..+..+.+.+|+.|++
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777777777777777777777777777743
No 172
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.88 E-value=13 Score=40.72 Aligned_cols=56 Identities=27% Similarity=0.281 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKD 400 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrd 400 (416)
+.|+.+-.++..++.||.+|..+|..++++...+..|+.+|.+-|+++-+. .++.+
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a 275 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555566677889999999999999999999999999999999987653 44443
No 173
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=81.80 E-value=35 Score=30.18 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=8.8
Q ss_pred hhhhhHhhhhccCHHHHHHHHH
Q 014879 310 WANEKLAEIALSDPKRAKRILA 331 (416)
Q Consensus 310 ~~~~~LaElAl~DpKR~KRiLk 331 (416)
++.+.|.++-. |+.++..++.
T Consensus 4 lS~~eL~~Ll~-d~~~l~~~v~ 24 (150)
T PF07200_consen 4 LSTEELQELLS-DEEKLDAFVK 24 (150)
T ss_dssp -TTHHHHHHHH-H-HHHHHHGG
T ss_pred CCHHHHHHHHc-CHHHHHHHHH
Confidence 44455555533 4444444444
No 174
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.74 E-value=14 Score=29.38 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
-|++|...|+.|..+...|...+..|+.+.+....|-..-.+||..+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777777777777777777766666666665555555443
No 175
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=81.74 E-value=21 Score=32.64 Aligned_cols=67 Identities=12% Similarity=0.015 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
+.....+...++.+..+..+|+.|+.....-..+...|+..++.....+.-++...+.|+.|-+.|+
T Consensus 29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3344455566666677777777777666666666667777777777666666666666777665554
No 176
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.65 E-value=27 Score=34.61 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 014879 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--AQLKDGIN 403 (416)
Q Consensus 326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--aqLrdALn 403 (416)
+|-.++-|+-++---++|.+|+.-+. .+...|..++..++.+.... |+.||..++.++++ ..++.++.
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~-------~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKK-------ADRDLLKEEIEKLEDKVECA---NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778877777777777777653 33345555555555555444 66688888888776 56777777
Q ss_pred HHHHHHHH
Q 014879 404 SFLLFYYL 411 (416)
Q Consensus 404 EaL~~Evq 411 (416)
+-+..-|+
T Consensus 221 ~yae~~i~ 228 (243)
T cd07666 221 DMAENNIS 228 (243)
T ss_pred HHHHHHHH
Confidence 76665554
No 177
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.58 E-value=17 Score=36.45 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+++..|++.++.|+..|..+++.|+.++..+..+.+.|......|
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544444444444443333333
No 178
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.53 E-value=31 Score=32.57 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
|.+|+.+...|+.+...|..++..+++..
T Consensus 129 i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 129 IEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 179
>PRK03918 chromosome segregation protein; Provisional
Probab=81.51 E-value=35 Score=37.89 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=3.7
Q ss_pred CCCCCCCCcc
Q 014879 108 RSSSDIPLGF 117 (416)
Q Consensus 108 Rs~Sd~p~g~ 117 (416)
|++.+..|.|
T Consensus 12 ~~~~~~~i~f 21 (880)
T PRK03918 12 RSHKSSVVEF 21 (880)
T ss_pred cCccCceEec
Confidence 3343333333
No 180
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.48 E-value=6.5 Score=30.59 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 364 LSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+..+++.|+.+...+..+|.+|+.+++.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444
No 181
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.38 E-value=44 Score=32.18 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
+.++++..++.+......++..++..+..|..+...+...|..|+
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444444444444444433
No 182
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.32 E-value=25 Score=38.48 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKF 387 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~ 387 (416)
+.+++||.++..++.+...+..++..++.+...+..+..+|+.
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444444443
No 183
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.25 E-value=18 Score=32.79 Aligned_cols=71 Identities=24% Similarity=0.244 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD---GINSFLLFYYLLLL 414 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd---ALnEaL~~EvqrL~ 414 (416)
...+++||.+++.|+.++..+-.+|+.|+..+..|..+...+..+|..+.....-.+ ..+|.|..-|+.|+
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LE 86 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHH
Confidence 344567777777777777777777777777777777777777666665544322211 33456666666554
No 184
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.23 E-value=25 Score=36.98 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 014879 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN---NELKFRLQAMEQQAQL 398 (416)
Q Consensus 322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN---~ELK~RLqaLEqQaqL 398 (416)
++..+++.+++|.. .-=...+.+|..+...|+.+...|+.+...+.++...+.... .+|+.++..|.++..-
T Consensus 10 n~~~v~~~l~~R~~-----~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~ 84 (425)
T PRK05431 10 NPEAVKEALAKRGF-----PLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA 84 (425)
T ss_pred CHHHHHHHHHhcCC-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 55566666666621 001566777888888888888888888888888887654433 2566666666655444
Q ss_pred HHHHHHHHHHHHHHh
Q 014879 399 KDGINSFLLFYYLLL 413 (416)
Q Consensus 399 rdALnEaL~~EvqrL 413 (416)
-++..+.+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 85 LEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555443
No 185
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.19 E-value=30 Score=38.15 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
...+.+||.++..+......|..++..|..++..|..+...++.+|..
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888776654
No 186
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=81.13 E-value=47 Score=32.90 Aligned_cols=13 Identities=15% Similarity=-0.325 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHh
Q 014879 401 GINSFLLFYYLLL 413 (416)
Q Consensus 401 ALnEaL~~EvqrL 413 (416)
...+.|+.||+.|
T Consensus 284 ~~~~~l~~ei~~L 296 (297)
T PF02841_consen 284 EEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4455666777766
No 187
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=81.10 E-value=25 Score=30.65 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
..+|..+++..+.|..-|+..++.+..++..|+.|.+.+|...-
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999999987663
No 188
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=81.10 E-value=44 Score=34.32 Aligned_cols=83 Identities=23% Similarity=0.271 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-
Q 014879 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGIN- 403 (416)
Q Consensus 326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALn- 403 (416)
.|.-+.+..++-+++. ++|-.+|..+......|..+-..+..++..|..+-.++-.+++.|-+. ..++...+
T Consensus 28 kR~El~~~~~~~~ekR------deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~ 101 (294)
T COG1340 28 KRDELRKEASELAEKR------DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNE 101 (294)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345555555555544 455667777777777777777777777777777777777777776655 35555555
Q ss_pred --------HHHHHHHHHhh
Q 014879 404 --------SFLLFYYLLLL 414 (416)
Q Consensus 404 --------EaL~~EvqrL~ 414 (416)
+.|..++++|+
T Consensus 102 ~~~~~~~~~~ler~i~~Le 120 (294)
T COG1340 102 FNLGGRSIKSLEREIERLE 120 (294)
T ss_pred hhccCCCHHHHHHHHHHHH
Confidence 45778888775
No 189
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.09 E-value=6.8 Score=34.78 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.+|-.||.-...|++++..+.+++..|..||+.|-+.|+.|-.
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 4566677777889999999999999999999999999988743
No 190
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=81.07 E-value=71 Score=34.49 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH---HHHH
Q 014879 340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN--------------NELKFRLQAMEQQAQL---KDGI 402 (416)
Q Consensus 340 ReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN--------------~ELK~RLqaLEqQaqL---rdAL 402 (416)
.-+-++.+..|..+.+.|+++..+|..|...|+.+.+.|..+- .+|+.|-..+||+++- +.--
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a 211 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANA 211 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555544444444444 4444444455555432 2223
Q ss_pred HHHHHHHHHHhh
Q 014879 403 NSFLLFYYLLLL 414 (416)
Q Consensus 403 nEaL~~EvqrL~ 414 (416)
.+++++|++++.
T Consensus 212 ~q~r~~ela~r~ 223 (499)
T COG4372 212 AQARTEELARRA 223 (499)
T ss_pred HHHHHHHHHHHH
Confidence 345566666543
No 191
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=80.92 E-value=35 Score=33.20 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSK 340 (416)
Q Consensus 324 KR~KRiLkNRESArRSR 340 (416)
+|+||..+.+.++-.-+
T Consensus 23 ~rLR~~E~ek~~~m~~~ 39 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEH 39 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666555554433
No 192
>PRK02119 hypothetical protein; Provisional
Probab=80.90 E-value=14 Score=30.12 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
-+..||.++..|+.........|..|..-...-..+...|+.+|+.|.++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999988888888888888888888888888777777543
No 193
>PRK04406 hypothetical protein; Provisional
Probab=80.70 E-value=16 Score=30.12 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.++.||.++..|+.....+...|..|..-......+...|+.+|+.|.+
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557999999999999888888888888888888888888877777744
No 194
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=80.53 E-value=7.6 Score=41.95 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
.+-+.++..|+.+...|+.++.++.++...+..+.++|
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeL 109 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKL 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 44444555554444444433333333333333333333
No 195
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.45 E-value=20 Score=33.79 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 337 rRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
...-++...-+.+|+.+++.+......- .+-+.+.+++..|..++.+|+.+|+
T Consensus 75 ~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 75 QKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555544222111 1222233344444444444444444
No 196
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.34 E-value=14 Score=41.83 Aligned_cols=74 Identities=22% Similarity=0.147 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHhh
Q 014879 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA-QLKD--GINSFLLFYYLLLL 414 (416)
Q Consensus 341 eRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa-qLrd--ALnEaL~~EvqrL~ 414 (416)
+|=..-..+|-...+.++.+...|+..+..+..+=+.|..+..+|...--.|..|+ -||. +..|.|+-||.||.
T Consensus 58 ~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~ 134 (717)
T PF09730_consen 58 ERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLE 134 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555554444444442 2222 55677888887774
No 197
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=80.33 E-value=9.3 Score=29.61 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 369 TILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 369 t~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
..|+..+..|..+|..|+.++..|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333
No 198
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=80.00 E-value=7.5 Score=35.68 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 362 TTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 362 s~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
..|..+...|++++..|..||..++.++.++..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666543
No 199
>PHA03162 hypothetical protein; Provisional
Probab=79.99 E-value=7.3 Score=35.78 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVT 369 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt 369 (416)
+|+.-+++|+.+++.|+.||..|..+|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999983
No 200
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.83 E-value=11 Score=30.08 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 359 TEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK 399 (416)
Q Consensus 359 sENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr 399 (416)
.+...+..++..++++...+..||.+|+.++..|.....+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe 64 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIE 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 34445555666666666666677777776666666555544
No 201
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=79.75 E-value=28 Score=33.35 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTIL 371 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~L 371 (416)
|...||..++.|+.+...++.++..+
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~v 162 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEV 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544443
No 202
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=79.69 E-value=47 Score=30.94 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
+|..+|..|+.+|..|..++..+..+...|.....+|+..+..|.
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 344555555555555555555555555555555556655555543
No 203
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.54 E-value=10 Score=30.02 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 377 GLTSENNELKFRLQAMEQQAQLKDGINSFLLFYY 410 (416)
Q Consensus 377 ~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Ev 410 (416)
.+..||.+|+..++.+++..+---.|.|.....|
T Consensus 18 tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3445666666666666665544346666655543
No 204
>PF13166 AAA_13: AAA domain
Probab=79.46 E-value=47 Score=36.05 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
++..+...+..++.+...+..++..++.+...+..+...++.++..++.+..-.+..-+.+..++++|
T Consensus 404 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 404 LIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555555555566666666666666666777777777777777665543345556666666655
No 205
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=79.46 E-value=42 Score=32.56 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
+|+.+..-+.....|...+...+.+-..+.....+.+.++++|+.+.+--.+.-+.|+..|+.|
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444555555555555444332223333444444444
No 206
>PRK02224 chromosome segregation protein; Provisional
Probab=79.45 E-value=45 Score=37.27 Aligned_cols=7 Identities=0% Similarity=-0.254 Sum_probs=3.4
Q ss_pred Cceeeec
Q 014879 65 TSVCIDE 71 (416)
Q Consensus 65 ~~v~~e~ 71 (416)
..|.+..
T Consensus 68 ~~v~~~f 74 (880)
T PRK02224 68 AEIELWF 74 (880)
T ss_pred EEEEEEE
Confidence 4455544
No 207
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.44 E-value=13 Score=42.04 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 014879 355 QTLQTEATTLSAQVTILQ---RDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 355 q~LqsENs~Ls~Qlt~Lq---re~~~L~sEN~ELK~RLqaLE 393 (416)
..|+.||-.|..||..|. -++.+|..|++.|...++-|.
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~ 141 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLN 141 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444544544444442 234455555555554444433
No 208
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.44 E-value=16 Score=38.27 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=4.1
Q ss_pred hhhccCHHHHH
Q 014879 317 EIALSDPKRAK 327 (416)
Q Consensus 317 ElAl~DpKR~K 327 (416)
++...+.-++|
T Consensus 210 svisa~~eklR 220 (365)
T KOG2391|consen 210 SVISAVREKLR 220 (365)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 209
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.32 E-value=25 Score=28.74 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
|-+.|..|-..-+.|......+...|..|...+..+..+...|+.++..++
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555555555555555544443
No 210
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=79.03 E-value=50 Score=30.18 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 354 VQTLQTEATTLSAQVTILQRDSAGL----TSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 354 Vq~LqsENs~Ls~Qlt~Lqre~~~L----~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
++.+..++..|..++..|++++-.- ..+-.+| +..+-+|-++-+...++|.+|+...+
T Consensus 62 l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeL---V~~IseQPK~IEkQte~LteEL~kkV 123 (126)
T PF07028_consen 62 LKELKQELDVLSKELQALRKEYLERRPLTKEDVEEL---VLRISEQPKFIEKQTEALTEELTKKV 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443321 1233444 55666777777788888888887654
No 211
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.01 E-value=10 Score=44.38 Aligned_cols=67 Identities=27% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDS--AGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~--~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
+++|+.--+.|..+.+-|..||..|..+. ..+.+|+=.|+++|..|+.+-..-....+-|++|...|
T Consensus 266 veelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 266 VEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444 44555556777777777766444445555666665554
No 212
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.94 E-value=75 Score=38.23 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=8.7
Q ss_pred CccccccccccC
Q 014879 251 RHCRSVSMDSYM 262 (416)
Q Consensus 251 rH~rS~SmDs~~ 262 (416)
|..|-+.+|+.+
T Consensus 736 rr~RVvTL~G~l 747 (1293)
T KOG0996|consen 736 RRWRVVTLDGSL 747 (1293)
T ss_pred CceEEEEeccee
Confidence 334599999984
No 213
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.92 E-value=37 Score=30.48 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSA-------QVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 328 RiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~-------Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
+++.--..+-.-|.++..+++.++..+...+.+...|.. ++..|+.++..+..+-..++.++..
T Consensus 100 ~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 100 RYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445556666666666666666666666543 4445554444444444444444333
No 214
>PLN02320 seryl-tRNA synthetase
Probab=78.82 E-value=35 Score=37.23 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 351 EQKVQTLQTEATTLSAQVTIL--QRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~L--qre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
..+++.|+.|-+.+..++... ..+...|..|-++||.+|..||++.
T Consensus 106 ~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~ 153 (502)
T PLN02320 106 QKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDL 153 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554431 1134567777778888888887654
No 215
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=78.80 E-value=21 Score=44.54 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
...-.+.++++++-=+..+...|++++.|++|+.+|...+..+.+....+..|..++..+|+.+-.+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4456789999999999999999999999999999999999999998888888888888888775543
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=78.78 E-value=10 Score=37.28 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
||+.++.-..-...|..||..|++++..|.-++.++..+|+.
T Consensus 45 le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 45 LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444444
No 217
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.64 E-value=41 Score=39.52 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q 014879 105 GHRRSSSDI 113 (416)
Q Consensus 105 ~HrRs~Sd~ 113 (416)
+|+-+-+||
T Consensus 116 g~~~~~~dI 124 (1163)
T COG1196 116 GEKVRLKDI 124 (1163)
T ss_pred CcEeeHHHH
Confidence 444445555
No 218
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.61 E-value=49 Score=29.59 Aligned_cols=9 Identities=11% Similarity=-0.311 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 014879 405 FLLFYYLLL 413 (416)
Q Consensus 405 aL~~EvqrL 413 (416)
..+..|+.|
T Consensus 111 myr~Qi~~l 119 (120)
T PF12325_consen 111 MYREQIDQL 119 (120)
T ss_pred HHHHHHHHh
Confidence 334444433
No 219
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.50 E-value=49 Score=36.73 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 375 SAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 375 ~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
...+..+.++|+.+++.++...+.++.+...|..|+.+|-
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566677778888888888888888888888888774
No 220
>PLN02678 seryl-tRNA synthetase
Probab=78.15 E-value=27 Score=37.33 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014879 322 DPKRAKRILANRQSAARSKERKMRYISEL-------EQKVQTLQTEATTLSAQVTILQ---RDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 322 DpKR~KRiLkNRESArRSReRKk~YleEL-------E~KVq~LqsENs~Ls~Qlt~Lq---re~~~L~sEN~ELK~RLqa 391 (416)
++..+++.+++|-.. .. -...+.+| ..+++.|+.+-+.++.++..+. .+...|..+-++|+.+|..
T Consensus 14 ~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~ 89 (448)
T PLN02678 14 DPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITE 89 (448)
T ss_pred CHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Confidence 455566666666421 00 12333333 4445555555555555554322 2334555566667777766
Q ss_pred HHHH
Q 014879 392 MEQQ 395 (416)
Q Consensus 392 LEqQ 395 (416)
|+.+
T Consensus 90 le~~ 93 (448)
T PLN02678 90 KEAE 93 (448)
T ss_pred HHHH
Confidence 6644
No 221
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.63 E-value=49 Score=37.94 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 014879 322 DPKRAKRILANRQSAA-----------RSKERKMRYISEL-------EQKVQTLQTEATTLSAQV--------TILQRDS 375 (416)
Q Consensus 322 DpKR~KRiLkNRESAr-----------RSReRKk~YleEL-------E~KVq~LqsENs~Ls~Ql--------t~Lqre~ 375 (416)
+..++|++++-.+.-- --..|.+.|..++ |.+...+|.-|..++.-+ ..+..+.
T Consensus 503 E~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~ 582 (961)
T KOG4673|consen 503 EENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERE 582 (961)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHH
Confidence 3456777666544322 2234555565554 444444444444433311 1344566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 376 AGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 376 ~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
.+|..+...|++.|+.-||++--| .+.++.|+..|
T Consensus 583 ~~lvqqv~dLR~~L~~~Eq~aarr---Ed~~R~Ei~~L 617 (961)
T KOG4673|consen 583 SMLVQQVEDLRQTLSKKEQQAARR---EDMFRGEIEDL 617 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 777777888888888888776444 23445555444
No 222
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=77.62 E-value=35 Score=27.39 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGL 378 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L 378 (416)
.|+..|+..+..++.+...+..++..++..+...
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333
No 223
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=77.47 E-value=17 Score=32.73 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
+|..-..=+-|-++|.++|+.|+-+..++..-|..|..||.-||..
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555666666666666666666666666666655543
No 224
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.36 E-value=48 Score=37.50 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQS-AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 324 KR~KRiLkNRES-ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
.++|..+..|.. -++-+++..+.+.+|+.+.+.|+.....|..++..+......|+..-+.+
T Consensus 557 ~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444442 23334444555666666666666666666666555555544444444433
No 225
>PRK00106 hypothetical protein; Provisional
Probab=77.30 E-value=80 Score=34.77 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014879 338 RSKERKMRYISELEQKVQTLQ 358 (416)
Q Consensus 338 RSReRKk~YleELE~KVq~Lq 358 (416)
..+..++++..+.+.++...+
T Consensus 65 EAke~~ke~~lEaeeEi~~~R 85 (535)
T PRK00106 65 ESKALKKELLLEAKEEARKYR 85 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 226
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.24 E-value=51 Score=31.47 Aligned_cols=15 Identities=13% Similarity=-0.328 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhc
Q 014879 401 GINSFLLFYYLLLLH 415 (416)
Q Consensus 401 ALnEaL~~EvqrL~q 415 (416)
.-...|..||++|.|
T Consensus 171 ~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445567777777754
No 227
>PRK14127 cell division protein GpsB; Provisional
Probab=77.14 E-value=17 Score=32.09 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLT-------------SENNELKFRLQAMEQQ 395 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~-------------sEN~ELK~RLqaLEqQ 395 (416)
+.|..++..|+.++..|..++..++.+..... .=|-.+..||..||+.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~ 100 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH
Confidence 33444444445555555555554444443322 2344566677777654
No 228
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.98 E-value=55 Score=38.50 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=4.0
Q ss_pred ccccccccc
Q 014879 253 CRSVSMDSY 261 (416)
Q Consensus 253 ~rS~SmDs~ 261 (416)
+|.+++|++
T Consensus 636 ~riVTl~G~ 644 (1163)
T COG1196 636 YRIVTLDGD 644 (1163)
T ss_pred ceEEecCCc
Confidence 344444443
No 229
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.86 E-value=38 Score=29.90 Aligned_cols=11 Identities=18% Similarity=-0.109 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 014879 401 GINSFLLFYYL 411 (416)
Q Consensus 401 ALnEaL~~Evq 411 (416)
..|..|+..++
T Consensus 119 ~QN~lLh~QlE 129 (132)
T PF07926_consen 119 EQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHh
Confidence 44555555544
No 230
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=76.82 E-value=33 Score=35.32 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD 400 (416)
Q Consensus 334 ESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd 400 (416)
++++|-....+..+.++|...+.-+........+-..++.++..|..||--|+++|......+..++
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777788888888887777777777777788888888888888888887776665554433
No 231
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=76.79 E-value=43 Score=28.01 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL~q 415 (416)
+.++.+-.....+..+...+..+-..++..+..-..|...++..|-.||++ .+++ +.-.+||.||++
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----~~YEeEI~rLr~ 71 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----QQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 456666777777777777777788888888888888888888888888876 4455 335777877763
No 232
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=76.64 E-value=13 Score=45.93 Aligned_cols=66 Identities=21% Similarity=0.137 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL 413 (416)
..|+..+.-|+.++.+|..+++....++..|..|+..-|+|.|.|..+ .++.-.-.+.|+.||.+|
T Consensus 1253 ~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~L 1319 (1822)
T KOG4674|consen 1253 EKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRL 1319 (1822)
T ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 334445555667777888888888888888888888889999987766 222223334444455554
No 233
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=76.64 E-value=44 Score=30.95 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 014879 354 VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--AQLKDGINSFLLFYYLL 412 (416)
Q Consensus 354 Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--aqLrdALnEaL~~Evqr 412 (416)
+..++.+...+..++..++.++..+. ..++..++.++.. ..++..|.+-+...|..
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~ 222 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEKEKVKDFKSMLEEYAESQIEY 222 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444443 2344455554443 45666666666555543
No 234
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=76.32 E-value=6.8 Score=40.95 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 354 VQTLQTEATTLSAQVTILQRDSAGL 378 (416)
Q Consensus 354 Vq~LqsENs~Ls~Qlt~Lqre~~~L 378 (416)
...|+.||..|++++..|..+.+.|
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555
No 235
>PRK12705 hypothetical protein; Provisional
Probab=76.31 E-value=1.1e+02 Score=33.47 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 014879 372 QRDSAGLTSENNELKF 387 (416)
Q Consensus 372 qre~~~L~sEN~ELK~ 387 (416)
.++...|.....+|..
T Consensus 94 ~~~~~~l~~~~~~l~~ 109 (508)
T PRK12705 94 DARAEKLDNLENQLEE 109 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 236
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=76.21 E-value=14 Score=37.77 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.|+=.||.+.+....|...|..|+..|+.++..+..+..+.|..|+-|...
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep 114 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREP 114 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 567778888888888888888888888888887777777777777776654
No 237
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.18 E-value=18 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.||.++..|+.....+...|..|.........+...|+.+|+.|..+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888877777777777777777777554
No 238
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.15 E-value=55 Score=37.61 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 356 TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 356 ~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
.|..|...+..++..++.+...|...+..|++.+..|+
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444555555555555555555555554444443
No 239
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=76.10 E-value=39 Score=37.22 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFL 406 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL 406 (416)
=.+.++.++..|+.|..-+..+..++.....++..+..+-..|+.+.+.++.+.++-+++.+.+
T Consensus 43 v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f 106 (618)
T PF06419_consen 43 VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERF 106 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456888999999999999999999999999999999999999999999999988888777654
No 240
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=76.08 E-value=24 Score=30.30 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 340 KERKMRYISELEQKVQTLQTEA-TTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 340 ReRKk~YleELE~KVq~LqsEN-s~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
|+==..|-..=|.||..|..-. .....++..|+.++..|..||..|+.+|....
T Consensus 22 ~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 22 RELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777899999997433 34677888888888888888888888887753
No 241
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=76.05 E-value=32 Score=28.14 Aligned_cols=47 Identities=28% Similarity=0.392 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQT--EATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 346 YleELE~KVq~Lqs--ENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.+..|+..+..|-+ .+..|+.+|..+..++..|..+-.++-.+|..+
T Consensus 11 ~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 11 NVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666653 555677777777777777777777766666555
No 242
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.80 E-value=30 Score=37.18 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 358 QTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLL 407 (416)
Q Consensus 358 qsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~ 407 (416)
..||.+.+-++...+-+.+....+|.++ -|+.+.++-+++++|+++++
T Consensus 87 ~~en~~~r~~~eir~~~~q~~e~~n~~~--~l~~~~~~~r~~e~la~~~~ 134 (459)
T KOG0288|consen 87 IAENLRIRSLNEIRELREQKAEFENAEL--ALREMRRKMRIAERLAEALK 134 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchh--hHHHHHHHHHHHHHHHHHhh
Confidence 3344443333333333333344444444 34455555566666666553
No 243
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.72 E-value=10 Score=30.01 Aligned_cols=38 Identities=13% Similarity=0.389 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
+.+||.++..+.....+ ++.++..+..+...|++.++.
T Consensus 2 i~elEn~~~~~~~~i~t-------vk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINT-------VKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45556555555554444 444444444555555544444
No 244
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=75.50 E-value=3.2 Score=31.24 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 355 QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 355 q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
..|-..|..|..++..|+.++..|..||..|+.++.
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 344456777777888888888888888888876654
No 245
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=75.37 E-value=1.1e+02 Score=31.94 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARS 339 (416)
Q Consensus 324 KR~KRiLkNRESArRS 339 (416)
.++.+.+.|+....+.
T Consensus 274 ~rL~~a~~~~L~~~~~ 289 (438)
T PRK00286 274 QRLARAMRRRLEQKRQ 289 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555544333
No 246
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.32 E-value=55 Score=38.95 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVT 369 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt 369 (416)
||.++..|..++..+...+.
T Consensus 886 le~~L~el~~el~~l~~~~~ 905 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIK 905 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 247
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.18 E-value=25 Score=33.26 Aligned_cols=55 Identities=16% Similarity=0.354 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQ------RDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq------re~~~L~sEN~ELK~RLqaLEqQa 396 (416)
.++.-+..|..+++.++.+...|..++..+. .+...+..+..+|+.++..|..+.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777666666666654 234556666666666666665543
No 248
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=75.10 E-value=33 Score=35.60 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
..|+.+++.|+.+|..|..++..+..++..+..+..++
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555544444
No 249
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=75.00 E-value=91 Score=32.08 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=49.1
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 318 IALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 318 lAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+...++--.|+. .=+.+.-+-++++ .+|..++..+..+-..|..++..+......+..+-++|-.+++.+..
T Consensus 5 ~~~~~E~e~K~~-~lk~~~~e~~ekR----~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 5 LDKLDELELKRK-QLKEEIEELKEKR----DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHhhhHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 3344555555555 77888888888888888888888888888888888888777776644
No 250
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=74.98 E-value=57 Score=32.44 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
..|+.++..++.+...+..++..++.+.
T Consensus 147 ~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 147 ELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 251
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=74.94 E-value=65 Score=31.20 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
+|+..--.=+..|+.|-..|..++..=..+...+..|++.+..+|
T Consensus 127 ~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 127 EDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334556777777777777777777777777777664444
No 252
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.88 E-value=30 Score=35.34 Aligned_cols=83 Identities=19% Similarity=0.250 Sum_probs=38.0
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 317 EIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 317 ElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+++..++|=.|=|+.|-+=- --|..=+-.|+-|-.++..++.....|..++....+++..+......|+.++..|..+.
T Consensus 85 ~l~evEekyrkAMv~naQLD-Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLD-NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444677778888883310 01111122334444444444444444444444444444444444444444444444444
Q ss_pred HHHH
Q 014879 397 QLKD 400 (416)
Q Consensus 397 qLrd 400 (416)
.-+|
T Consensus 164 ~~rd 167 (302)
T PF09738_consen 164 KQRD 167 (302)
T ss_pred HHHH
Confidence 3333
No 253
>PRK02224 chromosome segregation protein; Provisional
Probab=74.88 E-value=76 Score=35.54 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 014879 349 ELEQKVQTLQ 358 (416)
Q Consensus 349 ELE~KVq~Lq 358 (416)
+|+.++..++
T Consensus 513 ~l~~~~~~l~ 522 (880)
T PRK02224 513 RLEERREDLE 522 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 254
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.86 E-value=74 Score=39.01 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+.+++.++.+...|..++..+++....+..+...+.+.++.++.
T Consensus 382 eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334334443344444444444444333333333
No 255
>PRK05255 hypothetical protein; Provisional
Probab=74.85 E-value=26 Score=33.17 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 330 LANRQSAARSKERKMRYISELEQKV 354 (416)
Q Consensus 330 LkNRESArRSReRKk~YleELE~KV 354 (416)
...|....-.|.|..+||.-|=+.+
T Consensus 59 ea~ri~~~eA~RRqlqyIGKLmR~~ 83 (171)
T PRK05255 59 EAQRITSHEARRRQLQYIGKLMRNE 83 (171)
T ss_pred HHhhhccchHHHHHHHHHHHHHhhC
Confidence 3445555678899999999988775
No 256
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.80 E-value=7.8 Score=41.59 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred hhccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 014879 318 IALSDPKRAKRILANRQ---SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN------NELKFR 388 (416)
Q Consensus 318 lAl~DpKR~KRiLkNRE---SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN------~ELK~R 388 (416)
+.+.++...+++|-.=. ..+..-++..+.+.+++.+++.++.+...+..++..|+.++..|..-| .+|+.+
T Consensus 138 ~~l~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e 217 (563)
T TIGR00634 138 QLLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAE 217 (563)
T ss_pred HHhcCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHH
Confidence 45556666666654211 111111222333445555555555555566666666666666655433 457777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014879 389 LQAMEQQAQLKDGINSFLL 407 (416)
Q Consensus 389 LqaLEqQaqLrdALnEaL~ 407 (416)
++.|....+|++++..++.
T Consensus 218 ~~~L~n~e~i~~~~~~~~~ 236 (563)
T TIGR00634 218 QQRLSNLEKLRELSQNALA 236 (563)
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777666643
No 257
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=74.65 E-value=73 Score=29.77 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQ 367 (416)
Q Consensus 323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Q 367 (416)
.+|..++..+-..|.+.|..=.+...+.|.+++.-..|.+.+..+
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777778888888877777777777777777777776655
No 258
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=74.64 E-value=72 Score=29.54 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
+-.-|.++..+++.++..++..+.+..+|...-..-......+..|..+++.++..++... . .+++.++.|+.|..
T Consensus 126 ~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~--~-~is~~~k~E~~rf~ 201 (236)
T PF09325_consen 126 ALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF--E-EISENIKKELERFE 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHH
Confidence 3344555555666666666665555555555433334455556666666666665554332 2 44566777777653
No 259
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=74.55 E-value=17 Score=40.19 Aligned_cols=64 Identities=27% Similarity=0.196 Sum_probs=43.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 320 LSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 320 l~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
..|.|=.||-. |+=|-+.-.++-++-+ +.--..|.++|..|..+|+.|.+||-.||.||..|+.
T Consensus 274 ~~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 274 GSDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred ccCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 35777777742 3333333444444332 1233458889999999999999999999999988865
No 260
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=74.32 E-value=70 Score=35.38 Aligned_cols=72 Identities=21% Similarity=0.153 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ---AQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ---aqLrdALnEaL~~EvqrL~q 415 (416)
..-|.++|.+|..|.........++..++..++....+...++..++.+|.| .|.+.+=+..|..|++.|+.
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~ 96 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLD 96 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888888888888888888888888776 45666666777788877753
No 261
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=74.27 E-value=60 Score=37.22 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
++.++.....++.....|...+...+.++..|.+++..|+.+|..-+.+.--+.+.++.+++|..++
T Consensus 310 l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~ 376 (775)
T PF10174_consen 310 LETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL 376 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444555566666677777777777777777766555544445555555555543
No 262
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=74.13 E-value=68 Score=34.60 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL 413 (416)
...++-+.....+.+...+.+|...|+.++..|..+-..|..++++|.-+ .+|. +--+-|+.++++|
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ-~s~~Qlk~~~~~L 191 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ-ASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33444444444455556666666666666666666666666666664332 3333 2234455555544
No 263
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.09 E-value=31 Score=37.84 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.+.|+..+..|+..|..++...+++...+..|..+++.+++.|+.
T Consensus 432 adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD 476 (518)
T PF10212_consen 432 ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD 476 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555444
No 264
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.04 E-value=47 Score=37.58 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
.+++.+|..|+.+...-..++..++++...|......|..|++.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655555555555555555555555555555444
No 265
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.95 E-value=28 Score=43.55 Aligned_cols=68 Identities=18% Similarity=0.071 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
-|.+||.++......+..+..++..++.+...|..+..+.....+.+..|....+.-..+|..|++.|
T Consensus 1612 di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL 1679 (1930)
T KOG0161|consen 1612 DINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEEL 1679 (1930)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666665555555555555555555555555554444444444444444444455554444
No 266
>PRK01156 chromosome segregation protein; Provisional
Probab=73.79 E-value=93 Score=35.09 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+.+++.++..+..+-..|..++..+..+...+..+...|+..++.+
T Consensus 199 L~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l 244 (895)
T PRK01156 199 LENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL 244 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444333333
No 267
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=73.75 E-value=7.2 Score=42.00 Aligned_cols=56 Identities=25% Similarity=0.349 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 338 RSKERKMRYISELEQK----VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 338 RSReRKk~YleELE~K----Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
|-|.|+|+--+|=.+| |..|+.....-.+++..|+++.+.|..+|..|-++|+.++
T Consensus 254 RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 254 RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3345555544444444 3445555566666677777777777777777766666554
No 268
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=73.66 E-value=5.9 Score=31.84 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 359 TEATTLSAQVTILQRDSAGLTSENNELKFR 388 (416)
Q Consensus 359 sENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R 388 (416)
.|...|+.+|..|+.++..|..||.-||+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567777777777777777888777654
No 269
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=73.61 E-value=40 Score=32.44 Aligned_cols=46 Identities=24% Similarity=0.138 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 368 VTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 368 lt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
+..+...+..+..||..|+..|..+-++.+.-.+....|...-++|
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L 196 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQL 196 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555444443334444444444444
No 270
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.53 E-value=37 Score=36.07 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 364 LSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+..++..+..+...+..+..+|+++|+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 271
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.52 E-value=16 Score=43.72 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=60.8
Q ss_pred ccccccc-ccccChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 291 AKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVT 369 (416)
Q Consensus 291 ~~~~~e~-~g~~s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt 369 (416)
.+|..+| .-+-.-.++|+|+.+...+... +..|-.--++++|-=+--.+.|.++|.++...+.++..-...|.
T Consensus 1197 gay~s~f~~me~kl~~ir~il~~~svs~~~------i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~Le 1270 (1758)
T KOG0994|consen 1197 GAYASRFLDMEEKLEEIRAILSAPSVSAED------IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLE 1270 (1758)
T ss_pred hhhHhHHHHHHHHHHHHHHHhcCCCccHHH------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHH
Confidence 3555555 4444445566666443322111 12222223344444444556677777777777777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 370 ILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 370 ~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.||++...|..--++|++++..+...
T Consensus 1271 sLq~~~~~l~~~~keL~e~~~~ik~s 1296 (1758)
T KOG0994|consen 1271 SLQREFNGLLTTYKELREQLEKIKES 1296 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999988888998888777543
No 272
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.46 E-value=73 Score=34.98 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
.+.+|+.+++.++.+...+..++..++++...+..+...++.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444
No 273
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=73.08 E-value=1.1 Score=49.27 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 014879 338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAG---LTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 338 RSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~---L~sEN~ELK~RLqaLEqQ 395 (416)
..=++|.+-+.+|..+|+.|+.+|..|..++..|+.+... +..+...|+.++..|++.
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~ 378 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQK 378 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334688889999999999999999888888877766654 444555555555555443
No 274
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.94 E-value=1.1e+02 Score=31.88 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
.|..-+.....+|..|..++..|++.+..+.-+++-|+.++.
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 344444444555555555555555555555555554444443
No 275
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=72.92 E-value=58 Score=36.34 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 014879 380 SENNELKFRLQAMEQQ 395 (416)
Q Consensus 380 sEN~ELK~RLqaLEqQ 395 (416)
.|-..|+.++..|+.+
T Consensus 87 ~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555665544
No 276
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=72.86 E-value=56 Score=29.54 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEA 361 (416)
Q Consensus 348 eELE~KVq~LqsEN 361 (416)
..+..++..|+..+
T Consensus 58 ~~~~~~~~~l~~~~ 71 (136)
T PF04871_consen 58 EELASEVKELEAEK 71 (136)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 277
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=72.80 E-value=54 Score=31.07 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 336 AARSKERKMRYISELEQKVQTLQTEATTL 364 (416)
Q Consensus 336 ArRSReRKk~YleELE~KVq~LqsENs~L 364 (416)
+-.-|.++..|++.++..+..++.+..+|
T Consensus 106 ~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 106 AFAQRQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666555555555555
No 278
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=72.65 E-value=42 Score=30.89 Aligned_cols=63 Identities=16% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 339 SKERKMRYISELEQKVQTLQT---EATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINS 404 (416)
Q Consensus 339 SReRKk~YleELE~KVq~Lqs---ENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnE 404 (416)
.+.-.+..|.+...++..|+. .|..|..++..|+.++.. ...+++.+|..+.-..-|..+|..
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~---~~~~~e~~l~~~~~~~ai~~al~~ 93 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT---AKEEYEAKLAQMKKDSAIKSALKG 93 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666655 555666666666655543 223333344444444444444443
No 279
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=72.63 E-value=36 Score=37.27 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTIL---Q----RDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~L---q----re~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.++.||.++..|+.+...|..++..- + .....|..|-.+++.+|+.++.++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w 621 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAW 621 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999998888888887532 1 146777778888888888877665
No 280
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.62 E-value=38 Score=34.99 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTI 370 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~ 370 (416)
+.-+-.++..|+.+|..|+.....
T Consensus 43 l~~ek~~~~~L~~e~~~lr~~sv~ 66 (310)
T PF09755_consen 43 LETEKARCKHLQEENRALREASVR 66 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544333
No 281
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.59 E-value=58 Score=34.43 Aligned_cols=68 Identities=22% Similarity=0.346 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 014879 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTIL--------------QRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 325 R~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~L--------------qre~~~L~sEN~ELK~RLq 390 (416)
|+|.+..|-|--+.-|+ -+++=....++|+..|++|..|+..+ +.-...+..||..|+.+|+
T Consensus 76 kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55666666665555443 23344445556666666666665543 3444556677777777777
Q ss_pred HHHHHH
Q 014879 391 AMEQQA 396 (416)
Q Consensus 391 aLEqQa 396 (416)
++.++.
T Consensus 152 ~l~~e~ 157 (401)
T PF06785_consen 152 ALQQEC 157 (401)
T ss_pred HHHHHH
Confidence 766654
No 282
>PF15058 Speriolin_N: Speriolin N terminus
Probab=72.57 E-value=7 Score=37.93 Aligned_cols=37 Identities=32% Similarity=0.391 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
.+.|-++++.|..||.+|+.++. |..||.+||.-|..
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 35677888899999999998887 45677777765443
No 283
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=72.48 E-value=1.1e+02 Score=33.35 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQ 372 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lq 372 (416)
++..++.++..+..++..++
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 284
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=72.43 E-value=18 Score=34.18 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
-|.=.|++++.|+.+|..|..+++.|. ....+|..+-.++..++.+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~ 86 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLA 86 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999988888765 5567788888888777765
No 285
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=72.39 E-value=40 Score=37.35 Aligned_cols=88 Identities=15% Similarity=-0.014 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATT-LSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI 402 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~-Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL 402 (416)
+-..++-+||+-+--+----+.....++..+...|.+|.. ++.---+|.+++++.+.|-..|..|+.. .|. |. |.
T Consensus 583 ~v~qs~~~~~q~~~~~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~e--Ne~-l~-ae 658 (673)
T KOG4378|consen 583 FVDQSCEKVEQELEYVTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNE--NEM-LK-AE 658 (673)
T ss_pred HHHhhhhhHHhhcccchhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHH-HH-HH
Confidence 3334445555544444333444445566666677777765 3312234556788888888888655533 333 44 66
Q ss_pred HHHHHHHHHHhhc
Q 014879 403 NSFLLFYYLLLLH 415 (416)
Q Consensus 403 nEaL~~EvqrL~q 415 (416)
.+.|++|=|+|++
T Consensus 659 lk~lreenq~lr~ 671 (673)
T KOG4378|consen 659 LKFLREENQTLRC 671 (673)
T ss_pred HHHHHHhhhhhhc
Confidence 7788888888875
No 286
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=72.39 E-value=1e+02 Score=30.55 Aligned_cols=14 Identities=7% Similarity=-0.394 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhh
Q 014879 401 GINSFLLFYYLLLL 414 (416)
Q Consensus 401 ALnEaL~~EvqrL~ 414 (416)
.+++.++.++..|.
T Consensus 277 ~l~e~~~~~~~~l~ 290 (297)
T PF02841_consen 277 LLKEGFQEEAEKLQ 290 (297)
T ss_dssp HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666677777664
No 287
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=72.34 E-value=32 Score=32.55 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYY 410 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Ev 410 (416)
-+.+.+++...|..+|++|+.+|+.|-..++-.+++.+.++.=+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666655555555444433
No 288
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=72.33 E-value=20 Score=29.62 Aligned_cols=44 Identities=14% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 357 LQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD 400 (416)
Q Consensus 357 LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd 400 (416)
...+...+..++..++++...|..||..|+.++..+....++..
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~ 76 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34456677778888888888888999999888888877777664
No 289
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=72.22 E-value=42 Score=34.80 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLT 379 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~ 379 (416)
.|..+.+.|+.+...|.+|+..+......+.
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E 178 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHE 178 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444333
No 290
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.17 E-value=63 Score=38.11 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
+..-=++|...+.+|++..+.|..+...+..+|..|+++.
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555444
No 291
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.98 E-value=53 Score=37.31 Aligned_cols=10 Identities=20% Similarity=0.352 Sum_probs=5.6
Q ss_pred cCCccCCCCC
Q 014879 198 DMDSRASGSK 207 (416)
Q Consensus 198 ~~ds~~s~~~ 207 (416)
-+|..++||-
T Consensus 407 LlDE~g~GtD 416 (771)
T TIGR01069 407 LFDELGAGTD 416 (771)
T ss_pred EecCCCCCCC
Confidence 4566666654
No 292
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.96 E-value=80 Score=38.08 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
++..++..++.+...+..++..++++...+..+..+|+.++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~ 321 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTEALEREADALRTRLE 321 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333
No 293
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=71.84 E-value=6.4 Score=33.39 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQ 372 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq 372 (416)
-|+.+++.|..+++.++.+|..|..+|..+.
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888888888888888877654
No 294
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=71.68 E-value=1.1e+02 Score=32.27 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 014879 325 RAKRILANRQS 335 (416)
Q Consensus 325 R~KRiLkNRES 335 (416)
|+.+.+.++..
T Consensus 270 RL~~am~~~L~ 280 (432)
T TIGR00237 270 RLHRAFDTLLH 280 (432)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 295
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=71.42 E-value=12 Score=28.21 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 366 AQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 366 ~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
..+..|+.++..|..+|..|+.++..|++
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666666777777666666654
No 296
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.22 E-value=86 Score=31.88 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=7.1
Q ss_pred Ccccccccccc
Q 014879 251 RHCRSVSMDSY 261 (416)
Q Consensus 251 rH~rS~SmDs~ 261 (416)
.+.||.-|+..
T Consensus 121 ~~~RS~yLe~L 131 (269)
T PF05278_consen 121 QQFRSYYLECL 131 (269)
T ss_pred HHHHHHHHHHH
Confidence 46677777663
No 297
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=71.06 E-value=12 Score=39.19 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ-QAQLKDGI 402 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq-QaqLrdAL 402 (416)
.|--+|..|..+...+-+||.+-.++|..+..|-..+|.-+..|.- +++|+++|
T Consensus 144 nl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 144 NLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888888888888888888888888877777643 35555544
No 298
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=71.02 E-value=24 Score=39.53 Aligned_cols=49 Identities=24% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
...+.|||.|-|.|+.|..++..+++.|++....-..|...||..++.-
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 3567899999999999999999999999999888888888887776654
No 299
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.00 E-value=37 Score=27.67 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.++|.++..|+........-|..|..-......+...|+.+|+.|.+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888888888777777777777777777776644
No 300
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=70.98 E-value=34 Score=28.09 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 363 TLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 363 ~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.....+..|+..+.....+|..|..++..|.+|
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~q 57 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQ 57 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 301
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=70.90 E-value=77 Score=33.75 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 363 TLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 363 ~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.|.+.+..+.+++..+..+..+|..++..+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEK 159 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544443
No 302
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=70.87 E-value=24 Score=38.47 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAG 377 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~ 377 (416)
+++.|=...-+.||-|..++.+....||+++..
T Consensus 404 k~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 404 KHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444444455555555555555555555544
No 303
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.84 E-value=1.1e+02 Score=29.92 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=12.9
Q ss_pred ccChHHHHhhhhhhhHhhhhccCHHHHH
Q 014879 300 EFNDAELKKIWANEKLAEIALSDPKRAK 327 (416)
Q Consensus 300 ~~s~~e~kKi~~~~~LaElAl~DpKR~K 327 (416)
.+|++|+.+.-.-+-+.-+-..+-.|++
T Consensus 7 ~~sDeell~~skeel~~rLR~~E~ek~~ 34 (195)
T PF10226_consen 7 KVSDEELLRWSKEELVRRLRRAEAEKMS 34 (195)
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4556666555444444433333333333
No 304
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.77 E-value=68 Score=33.88 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 014879 335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTI--LQRDSAGLTSENNELKFRLQAMEQQAQLKD----GINSFLLF 408 (416)
Q Consensus 335 SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~--Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd----ALnEaL~~ 408 (416)
++-..|.+..+-+.+++..+.........+..++.. -......+..+...+..++..++++..++. .+++.++.
T Consensus 377 ~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 456 (503)
T KOG2273|consen 377 SLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRA 456 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433 233446677888888888888884443332 77888999
Q ss_pred HHHHhh
Q 014879 409 YYLLLL 414 (416)
Q Consensus 409 EvqrL~ 414 (416)
|++|+.
T Consensus 457 e~~~f~ 462 (503)
T KOG2273|consen 457 ELERFE 462 (503)
T ss_pred HHHHHH
Confidence 988875
No 305
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.70 E-value=68 Score=32.50 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL----TSENNELKFRLQAMEQ 394 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L----~sEN~ELK~RLqaLEq 394 (416)
.++.-+.++-.-++.-=+.....++++-.+++.++.++.++...+..|+.++..+ ..++..|+.|+.+|..
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666666666666666666666666666555443 3445555666666543
No 306
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=70.66 E-value=57 Score=26.64 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
|.+=..+++.|+.|-..|+.+.-.+...+..|..++.++...+..+..
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777776666666666666666655555543
No 307
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.64 E-value=81 Score=31.02 Aligned_cols=61 Identities=23% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLF 408 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~ 408 (416)
++|..+-..+..|...+.+.+..|+..+..+..|....+..++.+..+ ..|++.+|+.+.+
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555556666666666666666666666666554444 4566666555443
No 308
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=70.54 E-value=83 Score=28.44 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 378 LTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 378 L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
|......|..|+..|+.|...-....+.|+.+++.+.
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555554444445555555555543
No 309
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.47 E-value=56 Score=37.13 Aligned_cols=10 Identities=20% Similarity=0.352 Sum_probs=5.4
Q ss_pred cCCccCCCCC
Q 014879 198 DMDSRASGSK 207 (416)
Q Consensus 198 ~~ds~~s~~~ 207 (416)
-+|..++||-
T Consensus 412 LlDE~~~GtD 421 (782)
T PRK00409 412 LFDELGAGTD 421 (782)
T ss_pred EecCCCCCCC
Confidence 4556555543
No 310
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=70.23 E-value=1.2e+02 Score=36.32 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHhhc
Q 014879 354 VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ-LK---------DGINSFLLFYYLLLLH 415 (416)
Q Consensus 354 Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq-Lr---------dALnEaL~~EvqrL~q 415 (416)
++.+-..|..|+.++....++...+..+|...+.+++.+.|+.. ++ .+|-+.|.+++++|-+
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~ 331 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPE 331 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Confidence 34444568888888888888888888888888888877766532 22 2677788888887743
No 311
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=70.12 E-value=82 Score=35.39 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLT 379 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~ 379 (416)
.+|+.+|..|+.++..|..+|..++.++..-.
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e 113 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQE 113 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655555555554333
No 312
>PLN02678 seryl-tRNA synthetase
Probab=70.09 E-value=30 Score=37.05 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~EL 385 (416)
++..|..+...|..+..+|
T Consensus 79 ~~~~Lk~ei~~le~~~~~~ 97 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEA 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 313
>PRK00295 hypothetical protein; Provisional
Probab=69.69 E-value=38 Score=27.30 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
||.++..|+.....+...|..|.........+...|+.+|+.|.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888777777777777777777777777777776644
No 314
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=69.63 E-value=50 Score=34.39 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA--------------QLKDGINSFLLFYY 410 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa--------------qLrdALnEaL~~Ev 410 (416)
..++.|-.+...++.+..++..++..+......+..+..+|..+|+.+.++. +++.|++. |+.||
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~k-Lk~EI 344 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTK-LKQEI 344 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHHHH
Q ss_pred HHh
Q 014879 411 LLL 413 (416)
Q Consensus 411 qrL 413 (416)
..|
T Consensus 345 ~qM 347 (359)
T PF10498_consen 345 KQM 347 (359)
T ss_pred HHh
No 315
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.57 E-value=19 Score=27.91 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVTIL 371 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~L 371 (416)
...+.+.+|+.+++.++.+|..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666665
No 316
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=69.54 E-value=7.9 Score=34.83 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTI 370 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~ 370 (416)
|..-+++|+.+++.|+.||..|..++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999998764
No 317
>PRK04325 hypothetical protein; Provisional
Probab=69.27 E-value=40 Score=27.58 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+..+|.++..|+.....+...|..|..-...-..+...|+.+|+.|-.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887777777777777777777777766666643
No 318
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=69.17 E-value=19 Score=29.68 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014879 373 RDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 373 re~~~L~sEN~ELK~RLqaLEqQ 395 (416)
..+..|..||=.||.||--|++.
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~ 29 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEER 29 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 33444444444444444444443
No 319
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.17 E-value=19 Score=35.57 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRD 374 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre 374 (416)
+-+..|..+|+.|+++|.+|.+++..||.-
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566666666666666666666665543
No 320
>PF14282 FlxA: FlxA-like protein
Probab=68.94 E-value=29 Score=29.90 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014879 366 AQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 366 ~Qlt~Lqre~~~L~sEN~EL 385 (416)
.++..|+.++..|..+...|
T Consensus 51 ~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 321
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=68.91 E-value=65 Score=36.15 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLL 412 (416)
Q Consensus 333 RESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Evqr 412 (416)
|+.+.+-|..=++-|+.|...++.|..+...+..++..-+........+-.+++.|---|+...+-.+.....|++-++|
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555667788888888888888888888877777777777777777666444444444444444444444444
Q ss_pred h
Q 014879 413 L 413 (416)
Q Consensus 413 L 413 (416)
|
T Consensus 154 l 154 (632)
T PF14817_consen 154 L 154 (632)
T ss_pred H
Confidence 3
No 322
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.67 E-value=1.2e+02 Score=36.07 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=9.6
Q ss_pred hHHHHHhhcccccc
Q 014879 174 DDLFNEYMNLENID 187 (416)
Q Consensus 174 ~dl~~~ym~l~~~~ 187 (416)
|.||.=++||++|+
T Consensus 581 dslyGl~LdL~~I~ 594 (1201)
T PF12128_consen 581 DSLYGLSLDLSAID 594 (1201)
T ss_pred cccceeEeehhhcC
Confidence 45777777777774
No 323
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=68.55 E-value=56 Score=36.06 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 336 AARSKERKMRYISEL---EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQL 398 (416)
Q Consensus 336 ArRSReRKk~YleEL---E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqL 398 (416)
...+.+++++|-.|| +..+...+++-..|--++...+++...+..+++.++..+.+||+|.|+
T Consensus 37 fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 37 FEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445566666665554 444555566667778899999999999999999999999999998643
No 324
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=68.40 E-value=39 Score=27.02 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.+++.++..+++....+...+..|++....+..+-..+..+|..++..
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666766666666666777777776654
No 325
>PF15294 Leu_zip: Leucine zipper
Probab=68.38 E-value=19 Score=36.49 Aligned_cols=46 Identities=30% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 368 VTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 368 lt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
..+|..++..|..||..||.||..++.++-.---....|+.+++.|
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999998754433444455544443
No 326
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=68.38 E-value=61 Score=32.92 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRD 374 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre 374 (416)
.|..||+++..++.++....+||+.+.++
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34444444444444444444444444443
No 327
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.26 E-value=47 Score=33.70 Aligned_cols=14 Identities=14% Similarity=-0.420 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 014879 401 GINSFLLFYYLLLL 414 (416)
Q Consensus 401 ALnEaL~~EvqrL~ 414 (416)
...+.++..+++|.
T Consensus 286 ~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 286 KELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 328
>PHA03155 hypothetical protein; Provisional
Probab=68.19 E-value=53 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTI 370 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~ 370 (416)
-+++|+.+++.|+.||..|..++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999998843
No 329
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=68.19 E-value=65 Score=26.32 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQV 368 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Ql 368 (416)
...++..|+..+..++........+|
T Consensus 19 ~~~~~~~l~~~~~~l~~~~~~~~~~I 44 (127)
T smart00502 19 LEDALKQLISIIQEVEENAADVEAQI 44 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444
No 330
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=68.08 E-value=49 Score=38.60 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 356 TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 356 ~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.|+.+...+..||+.||..|..|..|...|..-++.+
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~ 132 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGA 132 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444
No 331
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=68.07 E-value=1.3e+02 Score=32.35 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014879 335 SAARSKERKMRYISELEQKVQTLQTEATT-LSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD-GINSFLLFYYL 411 (416)
Q Consensus 335 SArRSReRKk~YleELE~KVq~LqsENs~-Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd-ALnEaL~~Evq 411 (416)
+.+..++|-.+.-..-|.|+++-...-+. ...+-..|+.+...|..|..+.|.+++.+..|..++- +|..+++...|
T Consensus 317 a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCikaKsq 395 (442)
T PF06637_consen 317 ASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQ 395 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccC
Confidence 34444544444434334433332222222 2233366777788888888888888888777766653 67777766544
No 332
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.05 E-value=1.2e+02 Score=31.99 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE----NNELKFRLQAMEQQAQLKDGINSFLLFYYL 411 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE----N~ELK~RLqaLEqQaqLrdALnEaL~~Evq 411 (416)
...|..|..+...++.+...|+++...+.++...+... -.+|+.++..+.++..--++..+.+.+++.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666554322 235555555554443333333344444443
No 333
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=67.79 E-value=60 Score=34.30 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHhhc
Q 014879 362 TTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ-LK-DGINSFLLFYYLLLLH 415 (416)
Q Consensus 362 s~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq-Lr-dALnEaL~~EvqrL~q 415 (416)
..|..++..+......+..+..+|..+++.|+++.. |. .--++-+-.|+..|+.
T Consensus 88 ~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlr 143 (390)
T PRK10920 88 QELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFLVK 143 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Confidence 334444444444455555555555555555544432 11 1235566667666653
No 334
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=67.57 E-value=64 Score=31.02 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS 380 (416)
Q Consensus 328 RiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s 380 (416)
=|++-|.++..-|++=+.|..+||.+=..|.....-...||..|++.+..+..
T Consensus 117 ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~yk 169 (187)
T PF05300_consen 117 AILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFYK 169 (187)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999999999999999999999999999999988877766544
No 335
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.55 E-value=62 Score=29.90 Aligned_cols=12 Identities=8% Similarity=-0.576 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 014879 401 GINSFLLFYYLL 412 (416)
Q Consensus 401 ALnEaL~~Evqr 412 (416)
.-.++|+.+++.
T Consensus 175 ~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 175 KEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 336
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=67.50 E-value=1.2e+02 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKD 400 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrd 400 (416)
+..|-.-...+..||..|+.++..|.+++..|...+..|..+-+.|.++....+
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e 204 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLE 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555667788888888888888888888888888777777766554443
No 337
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.45 E-value=77 Score=29.28 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhh
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQ-RDSAGLTSENNELKFRLQAMEQQAQLKDGINSF------------LLFYYLLLL 414 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lq-re~~~L~sEN~ELK~RLqaLEqQaqLrdALnEa------------L~~EvqrL~ 414 (416)
.+||.....++...+.|+.++..++ .+...|..++..|+..+..|+++.+-.-....+ +++|...+.
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~ 126 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQE 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred c
Q 014879 415 H 415 (416)
Q Consensus 415 q 415 (416)
.
T Consensus 127 ~ 127 (177)
T PF07798_consen 127 L 127 (177)
T ss_pred H
No 338
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.42 E-value=69 Score=31.39 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
||..+..++.+.+.+..++..|+.....|.....+|+.+.+.
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333
No 339
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=67.36 E-value=1.1e+02 Score=36.26 Aligned_cols=68 Identities=28% Similarity=0.306 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSA-----QVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 325 R~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~-----Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
..-|=|.||+--.-+.++..+|-+++|.+-++|....+.|.. |-+.+++-...+..|-+||+.+++.-
T Consensus 1029 ~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kk 1101 (1189)
T KOG1265|consen 1029 GRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKK 1101 (1189)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557788888888888888888888888888887777654 33444445566777788888777653
No 340
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.23 E-value=42 Score=32.51 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQV 368 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Ql 368 (416)
|+.||+.|+.+.....++|
T Consensus 91 l~ek~q~l~~t~s~veaEi 109 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEI 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333333
No 341
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=67.07 E-value=79 Score=30.69 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+..|+..+..|+.+.+...+....+......+...-..|...++.+
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l 99 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNL 99 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444433333
No 342
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=67.06 E-value=29 Score=31.18 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
++=.+|..|+.....|.+|+..|.+....|+.||..|+.....|
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 45567889999999999999999999999999999995554444
No 343
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=67.05 E-value=5.6 Score=29.95 Aligned_cols=42 Identities=33% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQV 368 (416)
Q Consensus 326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Ql 368 (416)
.++...|++=|+..-.... .|.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 4556667766665544443 37788888888888888877765
No 344
>PRK00846 hypothetical protein; Provisional
Probab=66.99 E-value=47 Score=27.85 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.+||.++..|+........-|..|.........+...|+.+|+.|-.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888877777777777777777766666677666666643
No 345
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.85 E-value=92 Score=27.55 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.+...|..+...-...|..+++++..|.--|..|..|++.|...
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555666666666666666666655443
No 346
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=66.63 E-value=1.3e+02 Score=29.28 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGIN 403 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALn 403 (416)
|+.-+.+.+--.|+.+|.||. |.+||..-..-......--.=...|+++...|..+...=|.+.+.+|+... .+.
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~---K~~ 168 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHK---KLV 168 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 444455566677788888877 667776444333222221112233445555555444444444555544321 345
Q ss_pred HHHHHHHHHhhc
Q 014879 404 SFLLFYYLLLLH 415 (416)
Q Consensus 404 EaL~~EvqrL~q 415 (416)
..|.+|..++.|
T Consensus 169 ~~l~eE~~k~K~ 180 (192)
T PF09727_consen 169 SQLEEERTKLKS 180 (192)
T ss_pred HHHHHHHHHHHH
Confidence 566777777665
No 347
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.60 E-value=57 Score=28.78 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
.-|-.-|-.-|..+..|..+|..-+..+..+..|+..|..|-+.|+
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666666666666666666666665
No 348
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=66.56 E-value=1.5e+02 Score=31.34 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=47.8
Q ss_pred HHhhhhhhhHhhhhccCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 306 LKKIWANEKLAEIALSDPKRAKRILAN--RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENN 383 (416)
Q Consensus 306 ~kKi~~~~~LaElAl~DpKR~KRiLkN--RESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ 383 (416)
.|.+.+-.+|.|+.. +-.|.-.-++| -.-++.--+|++.-++.+...+...+.....=..+...|..++..|..++.
T Consensus 69 ~kt~larsKLeelCR-elQr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlk 147 (391)
T KOG1850|consen 69 LKTELARSKLEELCR-ELQRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLK 147 (391)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 355667777777763 11111112222 233444556777777777776666665555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 014879 384 ELKFRLQAMEQ 394 (416)
Q Consensus 384 ELK~RLqaLEq 394 (416)
+|-.+++..++
T Consensus 148 eL~eQy~~re~ 158 (391)
T KOG1850|consen 148 ELGEQYEEREK 158 (391)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 349
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=66.35 E-value=40 Score=36.70 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=6.6
Q ss_pred hhHHHHHhhccc
Q 014879 173 ADDLFNEYMNLE 184 (416)
Q Consensus 173 ~~dl~~~ym~l~ 184 (416)
-|||+.+-|.++
T Consensus 90 SdeFlrEdmky~ 101 (575)
T KOG4403|consen 90 SDEFLREDMKYR 101 (575)
T ss_pred chHHHHHHhhcc
Confidence 355666655554
No 350
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.29 E-value=1.5e+02 Score=35.29 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 327 KRILANRQSAARSKERKMRYISELEQK---VQT--L-----QTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 327 KRiLkNRESArRSReRKk~YleELE~K---Vq~--L-----qsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
|++.+-|..|+..-+=|-+|..+|-.- |+. | +....+|..++..+++++..|..+...||..+
T Consensus 283 rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666655555555555332 221 1 12234455566666666666666666665544
No 351
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=66.02 E-value=1.9e+02 Score=30.81 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQ 367 (416)
Q Consensus 323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Q 367 (416)
.+|...|..+-+.|...+++=.++..+.|.+++..+.|.+.+..+
T Consensus 31 ~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~ 75 (445)
T PRK13428 31 AARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEE 75 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777788777777777777777787777777776554
No 352
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=65.99 E-value=66 Score=31.23 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
.+..+..||.++..|..+...|..+.+........+...-..+..+.+.|.+..+--......|-.++..|
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457888999999999999999999999999999998888888888888877543323333444444443
No 353
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=65.95 E-value=78 Score=28.59 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSA 366 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~ 366 (416)
.|+.....++.++..|..
T Consensus 31 ~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 31 SLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444333333
No 354
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.80 E-value=1e+02 Score=33.61 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014879 327 KRILANRQSAARSKERKMR 345 (416)
Q Consensus 327 KRiLkNRESArRSReRKk~ 345 (416)
+..+.|-+++..+=+||++
T Consensus 367 ~~~~~~~e~~kk~~e~k~~ 385 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQ 385 (493)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3344455555555555543
No 355
>PRK00736 hypothetical protein; Provisional
Probab=65.70 E-value=50 Score=26.58 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
+|.++..|+.....+...|..|......-..+...|+.+|+.|-+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777776666666666666666666644
No 356
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.56 E-value=73 Score=31.12 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372 (416)
Q Consensus 334 ESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq 372 (416)
+.+.+.|+...+..++|+.++..|+.+...|+.++..++
T Consensus 105 en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 105 ENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444443
No 357
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.47 E-value=63 Score=36.74 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 014879 325 RAKRILANRQ 334 (416)
Q Consensus 325 R~KRiLkNRE 334 (416)
++-++|..-+
T Consensus 517 ~~~~li~~l~ 526 (782)
T PRK00409 517 KLNELIASLE 526 (782)
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 358
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.44 E-value=51 Score=33.70 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELK 386 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK 386 (416)
++||..+..++.++......+..+.+.+..|..|..+|+
T Consensus 122 ee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 122 EELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 359
>COG5293 Predicted ATPase [General function prediction only]
Probab=65.43 E-value=1.3e+02 Score=33.18 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 327 KRILANRQSAARSKERKM-RYISELEQKVQTLQTEATTLS---------AQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 327 KRiLkNRESArRSReRKk-~YleELE~KVq~LqsENs~Ls---------~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
|+|..||-+--.+.-.|. .-+.+++.+++.|-.+-+++. .+++.|+++...+..|..+|..|++.+.+-.
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~ 409 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLH 409 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 467777766555554443 235555666666655555433 4778889999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014879 397 QLKDGINSFLLFYYLLL 413 (416)
Q Consensus 397 qLrdALnEaL~~EvqrL 413 (416)
.+++.+++ |+.|+-++
T Consensus 410 ~~~~~i~~-lkhe~l~~ 425 (591)
T COG5293 410 ALDQYIGT-LKHECLDL 425 (591)
T ss_pred HHHHHHHH-HHHHHHHH
Confidence 77766543 44444433
No 360
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=65.41 E-value=49 Score=27.89 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
-.+|-.++..-+.|...|..-++.|+........-|..|..++..++
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666777777777777777777777666666655555444
No 361
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=65.33 E-value=77 Score=26.10 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
+++.+..+...+.|..++...+++...|...+..|-.+++.|..+
T Consensus 20 ~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 20 EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666666666666666544
No 362
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.05 E-value=17 Score=39.18 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
++|..+|..|+.+|..|..++..+.-.|.-|+.||+-|
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l 83 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPL 83 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchh
Confidence 55666677777777777777777777777777777776
No 363
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=65.01 E-value=1.6e+02 Score=29.66 Aligned_cols=13 Identities=8% Similarity=-0.207 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 014879 401 GINSFLLFYYLLL 413 (416)
Q Consensus 401 ALnEaL~~EvqrL 413 (416)
+|...|.+|.+++
T Consensus 253 ~l~~~i~~e~~~i 265 (362)
T TIGR01010 253 SLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHh
Confidence 4444455555544
No 364
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=64.58 E-value=68 Score=31.10 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATT 363 (416)
Q Consensus 347 leELE~KVq~LqsENs~ 363 (416)
+..||.||..|+..-..
T Consensus 81 vinlE~kvD~lee~fdd 97 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDD 97 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 365
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=64.23 E-value=97 Score=30.41 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
..++.||.+++.|+........++..++..-..+..+...|
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l 108 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSEL 108 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555554444444444444444444433333333
No 366
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=64.19 E-value=93 Score=33.46 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
+....+.+|..+++....-...|..-+...|.+...+..|-..|+.|-..|..+.+=|.+..+.|..-|..+
T Consensus 11 ~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i 82 (508)
T PF04129_consen 11 KESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345567777778888888888888888888888888888888888888888888877777777777666654
No 367
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=63.96 E-value=44 Score=34.68 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.+|++.|+.++..|+.+..+|..++.... ....+..+|+.++++++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k 287 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEK 287 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHH
Confidence 35566666666666666666666554333 333344444445555443
No 368
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.95 E-value=1.9e+02 Score=34.54 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 340 ReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
++-+...|++||.+++.++.+...+...+...+..+..|..+...|+.+|+.-.+
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~ 497 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNK 497 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999988888888888888888777766444
No 369
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=63.82 E-value=1.5e+02 Score=29.71 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
.++.+++.|+.++..|..++..+...+..-..-+.|+
T Consensus 189 ~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~ 225 (259)
T KOG4001|consen 189 RATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE 225 (259)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3566666677777777777766666655554444444
No 370
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=63.74 E-value=29 Score=35.35 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVT-------ILQRDSAGLTSENNELKFRLQAMEQ--QAQLKDGI 402 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt-------~Lqre~~~L~sEN~ELK~RLqaLEq--QaqLrdAL 402 (416)
..|.++|.+|+.|+--|..|.++++ .+...-..+..|...++.+|..||. ++.|+.|-
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR 283 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAAR 283 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3467899999999999999999983 3344455677888888888888864 34555443
No 371
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.65 E-value=88 Score=28.36 Aligned_cols=57 Identities=12% Similarity=0.277 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 339 SReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.|+.=.+.|+.|..+++....-...+..+++.++.+...+..+-..+...++.||..
T Consensus 62 tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 62 TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333445678888899988888888889999999999999999888888888888754
No 372
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=63.56 E-value=24 Score=32.15 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR 388 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R 388 (416)
|...|..++.|+.|...=-.++..|.+++..+...|..|..|
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444444444444444444555555555555555555443
No 373
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=63.39 E-value=55 Score=31.29 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=30.6
Q ss_pred hhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 308 KIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372 (416)
Q Consensus 308 Ki~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq 372 (416)
.+.=+.+.+|+.....+.+...+ +..+.-=++|++|+.+-+.+.+.++.+..+|..++...+
T Consensus 112 ~~~C~N~C~e~~~~~~~~~~~~~---~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 112 GGKCPNTCAELGKEYREELEEEE---EIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred CCCCccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777642222222221 122223334566776666666655555555555555443
No 374
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=63.28 E-value=18 Score=37.23 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879 383 NELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 383 ~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ql 416 (416)
.+...+|+.+.+=.+....|.+.|++|||.|.+|
T Consensus 253 ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l 286 (307)
T PF15112_consen 253 EEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSL 286 (307)
T ss_pred hhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 4455667777666677777778888888887654
No 375
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=63.05 E-value=51 Score=32.09 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014879 351 EQKVQTLQTEATTLSAQVTILQ 372 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~Lq 372 (416)
+..++.++.+...+..++...+
T Consensus 100 ~~~~~~~~~~i~~~~~~~~~a~ 121 (334)
T TIGR00998 100 EITVQQLQAKVESLKIKLEQAR 121 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 376
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.89 E-value=90 Score=33.54 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 334 QSAARSKERKMRYISELEQKVQTLQTEATT--LS-----AQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 334 ESArRSReRKk~YleELE~KVq~LqsENs~--Ls-----~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
..-...|.|=...+..-|..++.|+..... +. .++..|..+...+..|+..|..+|+.+..++
T Consensus 235 ~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 235 AELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555552211 11 2245555666666666666666666655544
No 377
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=62.73 E-value=57 Score=29.58 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
.+.+++|-.+-++|..++..|...|..|+.+.
T Consensus 34 aqrleel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 34 AQRLEELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666543
No 378
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.61 E-value=1.1e+02 Score=36.96 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLL 407 (416)
Q Consensus 335 SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~ 407 (416)
+...+.++++.-+..|+..+..+..|..+....+..+..+-..|......+++|+..+.++.+-...-+++|+
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~ 604 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLD 604 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444555666666666666666666666666666666666666666666777777666665444444444443
No 379
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.57 E-value=87 Score=35.86 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
++..|+.....|+.++..-......|..+|.-||.++.+-..+...-+.....|+.|++.|.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~k 649 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLK 649 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566665555555566666666666555544333333344444555554443
No 380
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=62.54 E-value=1.2e+02 Score=36.27 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
..+||+++...+.+...+..++...+.+.
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56777777666666666665555554444
No 381
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=62.47 E-value=1.6e+02 Score=28.89 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQV 368 (416)
Q Consensus 323 pKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Ql 368 (416)
.+|.++|..+-+.|...++.=.+...+.+.+++.++.+...+..+.
T Consensus 35 ~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 80 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA 80 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888888777765543
No 382
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=62.44 E-value=13 Score=29.95 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSA 366 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~ 366 (416)
..|.+|+.++..|+.||+-|+.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666654
No 383
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.42 E-value=1.6e+02 Score=35.26 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
+.|.-.+..|+.+...+..+++.+..++..|..|+..|+..+..
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555555555444443
No 384
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=62.38 E-value=17 Score=32.71 Aligned_cols=40 Identities=38% Similarity=0.407 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 359 TEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK 399 (416)
Q Consensus 359 sENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr 399 (416)
.|...|+.||..|.+++..|+.||.-||. +..=||-+||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~-~~spe~L~ql~ 106 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT-LASPEQLAQLP 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHH
Confidence 45566777777777777778888877753 33333334443
No 385
>PRK14011 prefoldin subunit alpha; Provisional
Probab=62.19 E-value=43 Score=30.71 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 014879 385 LKFRLQAMEQQAQ 397 (416)
Q Consensus 385 LK~RLqaLEqQaq 397 (416)
|..+++.++++++
T Consensus 125 L~~k~~~~~~~~~ 137 (144)
T PRK14011 125 LEKRAQAIEQRQA 137 (144)
T ss_pred HHHHHHHHHHHhh
Confidence 5555666655554
No 386
>PRK14160 heat shock protein GrpE; Provisional
Probab=62.15 E-value=79 Score=30.89 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
.|+.++..|+.++..|..++..++.++..+.++..-++.|.+.
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555443
No 387
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=62.15 E-value=29 Score=33.78 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 358 QTEATTLSAQVTILQRDSAGLTSENNELKF 387 (416)
Q Consensus 358 qsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~ 387 (416)
-.||..|...|..++.++..|..||.+|+.
T Consensus 124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 124 LEENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999998865
No 388
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=62.02 E-value=37 Score=35.76 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
|...|+++++.|..||++|+.++.+||..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665443
No 389
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.92 E-value=1.6e+02 Score=31.66 Aligned_cols=58 Identities=24% Similarity=0.404 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 331 ANRQSAARSKERKMRYISELEQ---K-----------VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR 388 (416)
Q Consensus 331 kNRESArRSReRKk~YleELE~---K-----------Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R 388 (416)
.-++.|++.-+=|-..|+.|.. . +..|..|...+..++..|+.+...+..|-.+++.+
T Consensus 239 ~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 239 QYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455554445555555554 1 34455555555555555555555555555444433
No 390
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=61.79 E-value=64 Score=28.90 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 356 TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 356 ~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
.|....=.+..++..+...-..|..+..+|+.+|++|+.+
T Consensus 83 ~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 83 ELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3333333444444555555555555666666666665544
No 391
>PRK01156 chromosome segregation protein; Provisional
Probab=61.77 E-value=2.1e+02 Score=32.41 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAME 393 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLE 393 (416)
.+..++.+...+..++..+..++..+..+...++.++..++
T Consensus 198 eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 198 ELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444443
No 392
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.64 E-value=1.8e+02 Score=29.35 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQ----RDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lq----re~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL 413 (416)
+-...+..|+.+|..|.++......++..|. .++---..+...|..+|+.+... ..=.|.|++.++.|...|
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l 154 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASL 154 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433332 22222223445555556554322 222236666666666554
No 393
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.50 E-value=84 Score=34.30 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014879 363 TLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 363 ~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
+|..++..++.+...+..+|.-|
T Consensus 386 q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444334333
No 394
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.37 E-value=20 Score=36.09 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.+||.++..|+.+..+|+. ++.++.++..+..+..+...|++.++...
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 57888999999988888888 88888888777777777777777776553
No 395
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=61.34 E-value=41 Score=33.68 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 014879 374 DSAGLTSENNELKFR 388 (416)
Q Consensus 374 e~~~L~sEN~ELK~R 388 (416)
+...|+.||+.||.-
T Consensus 91 ~~~~l~~EN~~Lr~l 105 (284)
T COG1792 91 EVESLEEENKRLKEL 105 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 396
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=61.29 E-value=1.1e+02 Score=37.12 Aligned_cols=49 Identities=22% Similarity=0.108 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Q 014879 366 AQVTILQRDSAGLTSENNELKFRLQAME-------QQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 366 ~Qlt~Lqre~~~L~sEN~ELK~RLqaLE-------qQaqLrdALnEaL~~EvqrL~ 414 (416)
++.+.|+.+-..|..+-++-.++|+.|| ++...+.+...-|..||.+++
T Consensus 1689 ~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1689 ERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3344455555445444444444555554 233334444555555655543
No 397
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.22 E-value=2.5e+02 Score=32.07 Aligned_cols=12 Identities=42% Similarity=0.662 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQT 359 (416)
Q Consensus 348 eELE~KVq~Lqs 359 (416)
.+||.+.+.|+.
T Consensus 546 ~~l~~~~~~l~~ 557 (771)
T TIGR01069 546 KELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 398
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=61.21 E-value=24 Score=27.66 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 342 RKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
|++..|.|||.+++.-+ |... ..-.....++..|..||..|+.+|..+
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~--~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARS--LDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred CHHHHHHHHHHHHHHhH-Hhcc--CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777766533 1111 112233445555666666666665543
No 399
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=61.12 E-value=15 Score=39.65 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 362 TTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 362 s~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
..|...+..||+++.+|+..+++|++||.+....
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~ 442 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEERER 442 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888888776543
No 400
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=61.06 E-value=70 Score=28.78 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014879 379 TSENNELKFRLQAME 393 (416)
Q Consensus 379 ~sEN~ELK~RLqaLE 393 (416)
..|-.||+.||..||
T Consensus 24 eiERaEmkarIa~LE 38 (134)
T PF08232_consen 24 EIERAEMKARIAFLE 38 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 401
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=61.00 E-value=1.4e+02 Score=27.51 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLK 399 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLr 399 (416)
+.+....+..|...-.....+-..|...+..|..|...|..-.+++....+--
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 75 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYF 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444455555555555555555556666666666666555555555444433
No 402
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=60.86 E-value=43 Score=36.44 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQ------RDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lq------re~~~L~sEN~ELK~RLqaLEqQa 396 (416)
++.||.++..|+.+...|..++..-. .+...|..|-.+++.+|+.++.++
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 625 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERW 625 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988888875321 145666667777777776666555
No 403
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=60.81 E-value=1.6e+02 Score=28.24 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQV 368 (416)
Q Consensus 322 DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Ql 368 (416)
=++|..+|...-+.|.+.|..=.+.+.+.|.++...+.+.+.+..+.
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A 128 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA 128 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999999999999999998888876543
No 404
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=60.75 E-value=40 Score=30.39 Aligned_cols=41 Identities=32% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLT 379 (416)
Q Consensus 339 SReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~ 379 (416)
-+..|..-+++|+.++..|+.+..+|..|-..++.++..|.
T Consensus 64 vk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 64 VKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888777776666666555554444433
No 405
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.73 E-value=33 Score=28.76 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLS 365 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls 365 (416)
.|..|+..|+.+|..|.
T Consensus 79 ~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 79 ELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 406
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=60.71 E-value=98 Score=26.93 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=11.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 321 SDPKRAKRILANRQSAARSKERKMR 345 (416)
Q Consensus 321 ~DpKR~KRiLkNRESArRSReRKk~ 345 (416)
.|-..+...+.|-.-|.-..+....
T Consensus 27 ~Di~~Lq~~i~~vtf~~l~~e~~~~ 51 (118)
T PF13815_consen 27 LDIDTLQENIENVTFCDLENEDCQH 51 (118)
T ss_pred cCHHHHHHHHHhcceeccChhhccC
Confidence 3444444445554444444444443
No 407
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.63 E-value=28 Score=29.21 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 363 TLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 363 ~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
.|..++..|++....|..+|..|+.++.
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666667777777777776653
No 408
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=60.43 E-value=1.9e+02 Score=34.04 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 330 LANRQSAARSKERKMRYISELEQKVQTLQTE 360 (416)
Q Consensus 330 LkNRESArRSReRKk~YleELE~KVq~LqsE 360 (416)
.+.-++|+.+.....+...+|..+|..++.+
T Consensus 451 ~kQle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 451 QKQLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 409
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.29 E-value=2.2e+02 Score=34.14 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
.++.++..++.+...+..++..++.+.
T Consensus 228 ~~q~kie~~~~~~~~le~ei~~l~~~~ 254 (1311)
T TIGR00606 228 SKEAQLESSREIVKSYENELDPLKNRL 254 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 410
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=60.28 E-value=73 Score=29.87 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
+.++++|+.|.-|+-.=+.|-....+|..+++..+.....+..+|+.|..+.
T Consensus 84 ~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m 135 (152)
T PF11500_consen 84 KEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQM 135 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888887777766666666666554443
No 411
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=60.27 E-value=17 Score=41.98 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014879 373 RDSAGLTSENNELKFRL 389 (416)
Q Consensus 373 re~~~L~sEN~ELK~RL 389 (416)
.-+..+..||..-+...
T Consensus 987 naf~ea~~en~krRee~ 1003 (1102)
T KOG1924|consen 987 NAFLEAVAENEKRREEE 1003 (1102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555444333
No 412
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.22 E-value=2.6e+02 Score=30.56 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
++..++.++..+..++.+|+.++
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~~~l 90 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVTTRM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333
No 413
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.18 E-value=56 Score=34.40 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=2.6
Q ss_pred cCCCCCC
Q 014879 42 LDSLPPL 48 (416)
Q Consensus 42 ~dsLpPl 48 (416)
+++..=|
T Consensus 29 ls~~~sL 35 (365)
T KOG2391|consen 29 LSSFKSL 35 (365)
T ss_pred HHhcccc
Confidence 3333333
No 414
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.03 E-value=82 Score=34.68 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Q 014879 343 KMRYISELEQKVQTLQTE-------ATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--AQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsE-------Ns~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--aqLrdALnEaL~~EvqrL 413 (416)
+++-+++++.+|+.|+.. ..+..+++..|+.+.......-+.|+..|+..-.+ .+++ ++..+-+.-+.||
T Consensus 189 ~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~-~lk~ap~~D~~~L 267 (555)
T TIGR03545 189 NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLA-ELKKAPQNDLKRL 267 (555)
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHhccHhHHHHH
Confidence 345667777777777764 22334444444444444444444444444443222 1222 4444444455555
Q ss_pred h
Q 014879 414 L 414 (416)
Q Consensus 414 ~ 414 (416)
+
T Consensus 268 ~ 268 (555)
T TIGR03545 268 E 268 (555)
T ss_pred H
Confidence 4
No 415
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=59.76 E-value=1.3e+02 Score=36.60 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=14.2
Q ss_pred CCCCCCCC-CCCCCCCCCCCcccccc
Q 014879 97 SENLPPRR-GHRRSSSDIPLGFSAMI 121 (416)
Q Consensus 97 ~~~lpprk-~HrRs~Sd~p~g~~~~~ 121 (416)
|.+|-=.+ ||-| |+++.|-++.+
T Consensus 220 GsClkm~~dG~V~--s~~aVGTPDYI 243 (1317)
T KOG0612|consen 220 GSCLKMDADGTVR--SSVAVGTPDYI 243 (1317)
T ss_pred hhHHhcCCCCcEE--eccccCCCCcc
Confidence 44454444 6654 66788988765
No 416
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=59.60 E-value=31 Score=32.06 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 331 ANRQSAARSKERKMRYISELEQKV 354 (416)
Q Consensus 331 kNRESArRSReRKk~YleELE~KV 354 (416)
..|....-.|.|..+||.-|=+.+
T Consensus 49 a~ri~~~~arrRQ~qyIGKLmR~~ 72 (157)
T PF04751_consen 49 ARRITSHEARRRQLQYIGKLMREE 72 (157)
T ss_dssp GGG--SHHHHHHHHHHHHHHGGGS
T ss_pred HHHHcccHHHHHHHHHHHHHHHhC
Confidence 344455667889999998886665
No 417
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=59.57 E-value=38 Score=28.51 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNE 384 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~E 384 (416)
.-+..|-.+|...+.||..|..++..|+..+..|+.....
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3466777788888888888888888888888888775443
No 418
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.44 E-value=30 Score=28.21 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTI 370 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~ 370 (416)
..|+.+++.++.+...|..++..
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 419
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=59.23 E-value=48 Score=33.52 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=49.4
Q ss_pred hHHH-HhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 303 DAEL-KKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQ-TLQTEATTLSAQVTILQRDSAGLTS 380 (416)
Q Consensus 303 ~~e~-kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq-~LqsENs~Ls~Qlt~Lqre~~~L~s 380 (416)
.-|+ |.+..-+.|-.-+..-.++.-|+|..---+-|-++||++--.+|..+.+ ++-.|..+|.+++..|+.+...|.+
T Consensus 163 ~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~ 242 (289)
T COG4985 163 ERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566 4455666676666666777788888777888888888887777777654 3344444444444444444444444
Q ss_pred H
Q 014879 381 E 381 (416)
Q Consensus 381 E 381 (416)
|
T Consensus 243 e 243 (289)
T COG4985 243 E 243 (289)
T ss_pred h
Confidence 3
No 420
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=59.07 E-value=94 Score=31.58 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.4
Q ss_pred cccccCCC
Q 014879 237 GIKRSACG 244 (416)
Q Consensus 237 g~kr~a~~ 244 (416)
||-=..+|
T Consensus 104 Gv~l~fnG 111 (264)
T PF07246_consen 104 GVSLDFNG 111 (264)
T ss_pred eeEEecCC
Confidence 44444444
No 421
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=59.00 E-value=7 Score=34.15 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
+|..|..++..+.....+|.+.|..++.|
T Consensus 58 ~I~~L~~~v~~~~~~Q~~ld~~L~~ie~q 86 (116)
T PF05064_consen 58 KISKLYSEVQKAESEQKRLDQELDFIEAQ 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555544
No 422
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.92 E-value=1.3e+02 Score=31.37 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTIL 371 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~L 371 (416)
-.++|+...+.||+.+.....+++.+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel 30 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766655544443
No 423
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=58.89 E-value=66 Score=35.77 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
..+++.++....++..++..|+.+...+..+...|.+.++.|. + .-++-+-.|++.|+
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~-----~-~r~dW~laEae~Ll 427 (656)
T PRK06975 370 RVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS-----R-NRDDWMIAEVEQML 427 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----c-ChhhhHHHHHHHHH
Confidence 3334444444444444454444444444444444444443331 1 22555666666664
No 424
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=58.89 E-value=2.2e+02 Score=32.94 Aligned_cols=16 Identities=19% Similarity=0.715 Sum_probs=10.1
Q ss_pred HHHHhhcccccccCCC
Q 014879 176 LFNEYMNLENIDTLNS 191 (416)
Q Consensus 176 l~~~ym~l~~~~~~n~ 191 (416)
|..-|+.||+|..++.
T Consensus 381 LMDDFlEmEkLA~~s~ 396 (769)
T PF05911_consen 381 LMDDFLEMEKLAALSR 396 (769)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4444566788877763
No 425
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=58.81 E-value=63 Score=26.89 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 365 SAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 365 s~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
-.-+..||.+.+.++-|+-+|+++|..+.|+.
T Consensus 7 P~lL~~lQnEWDa~mLE~f~LRk~l~~~rqEL 38 (70)
T PF08606_consen 7 PSLLSTLQNEWDALMLENFTLRKQLDQTRQEL 38 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888888887776653
No 426
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=58.64 E-value=60 Score=30.93 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSE 381 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sE 381 (416)
++..|+.+.+.|+.++..|..+....+.++..|..-
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555444433
No 427
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=58.62 E-value=1.5e+02 Score=33.39 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQ-----------RDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lq-----------re~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
-+..+...+.....+|..|...|..++ .++..|..+++.+...|..|+.+.+-+ ...|.|+.|+.-|+
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 344444444445555555554444333 344455555555555566666666555 66777888877766
Q ss_pred c
Q 014879 415 H 415 (416)
Q Consensus 415 q 415 (416)
+
T Consensus 358 ~ 358 (629)
T KOG0963|consen 358 A 358 (629)
T ss_pred H
Confidence 4
No 428
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=58.59 E-value=1.2e+02 Score=31.31 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHhhc
Q 014879 373 RDSAGLTSENNELKFRLQAMEQQAQ-LKD-GINSFLLFYYLLLLH 415 (416)
Q Consensus 373 re~~~L~sEN~ELK~RLqaLEqQaq-Lrd-ALnEaL~~EvqrL~q 415 (416)
.....+..+...+..+++.++++.. |.. --++.+-.|++.|+.
T Consensus 93 ~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyLlr 137 (372)
T PF04375_consen 93 EQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYLLR 137 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 3334444444444444544444321 110 334455667776653
No 429
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.57 E-value=73 Score=37.11 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
-|+++..+......|...|.++|..+|+.+..|.-|.++|..+|..+
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 34445555555556666677777777777777777776666655443
No 430
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=58.47 E-value=1.5e+02 Score=27.17 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 342 RKMRYISELEQKV-QTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 342 RKk~YleELE~KV-q~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.--+|-++||.++ -.++.-+..--.+|..||.-+.....+...|++.+..+
T Consensus 79 i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 79 IYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666 55666666666666666665555555555555444443
No 431
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=58.41 E-value=1.5e+02 Score=32.35 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ 397 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq 397 (416)
......|+..++.|..+..........+......|..+..+.++..+.++++.+
T Consensus 102 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~ 155 (779)
T PRK11091 102 LELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSS 155 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566665555554444444444455555555555555555554443
No 432
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.39 E-value=84 Score=33.41 Aligned_cols=39 Identities=21% Similarity=0.084 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHH--HHHHHHHHHHHHhh
Q 014879 376 AGLTSENNELKFRLQAMEQQA------QLKD--GINSFLLFYYLLLL 414 (416)
Q Consensus 376 ~~L~sEN~ELK~RLqaLEqQa------qLrd--ALnEaL~~EvqrL~ 414 (416)
+.-..|...||+.|..||... +.|| -..|.++.-|.+|+
T Consensus 272 elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 272 ELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334567778888888888742 4442 12344455565665
No 433
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=58.34 E-value=82 Score=27.67 Aligned_cols=72 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGL-----TSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L-----~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL~q 415 (416)
+.....|+.+.+.++.+...+..++..+.+++... ..+...+..+++.++++ .+....++..|..+-+.+.+
T Consensus 35 k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~ 112 (158)
T PF03938_consen 35 KDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQ 112 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=58.27 E-value=1.7e+02 Score=32.00 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 349 ELEQKVQTLQTEATTLSAQVTILQRDSAGLTS------ENNELKFRLQAMEQQAQLKDGINSF 405 (416)
Q Consensus 349 ELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s------EN~ELK~RLqaLEqQaqLrdALnEa 405 (416)
++..+++.++........++..|+.++..|.. |-.+|+.+++.|....+|.+++..+
T Consensus 168 ~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~ 230 (553)
T PRK10869 168 QSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNA 230 (553)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443 3345555566665555555555444
No 435
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=58.12 E-value=80 Score=33.11 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 364 LSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 364 Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
...++..+.+....|..+..+|+.++..|
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 436
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=57.99 E-value=1.9e+02 Score=31.05 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=56.9
Q ss_pred HHHHhhhhhhhH------hhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 304 AELKKIWANEKL------AEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAG 377 (416)
Q Consensus 304 ~e~kKi~~~~~L------aElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~ 377 (416)
+-++|.|+--+. ..+|. -+||.+.+++.-+. -|+++.+|..+-..-+..|+.|...|..||..-..+...
T Consensus 89 ~iL~~mM~qcKnmQe~~~s~LaA-aE~khrKli~dLE~---dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK 164 (561)
T KOG1103|consen 89 DILDKMMAQCKNMQENAASLLAA-AEKKHRKLIKDLEA---DREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKK 164 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666654432 33333 35666666665443 467788888888888899999999999999887777777
Q ss_pred HHHHHHHHHHHHH
Q 014879 378 LTSENNELKFRLQ 390 (416)
Q Consensus 378 L~sEN~ELK~RLq 390 (416)
...+...|..+|.
T Consensus 165 ~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 165 AEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776655554
No 437
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.92 E-value=98 Score=34.03 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQ--------------TEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 325 R~KRiLkNRESArRSReRKk~YleELE~KVq~Lq--------------sENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
++.++.++-..|.-.=++-|....+|++++-.+. .+-.+|+.|+..|.++...= ++||.||.
T Consensus 363 ~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~ 438 (508)
T KOG3091|consen 363 RVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP----NQLKARLD 438 (508)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh----HHHHHHHH
Q ss_pred HHHHHHHHH-----------------HHHHHHHHHHHHHhhcC
Q 014879 391 AMEQQAQLK-----------------DGINSFLLFYYLLLLHL 416 (416)
Q Consensus 391 aLEqQaqLr-----------------dALnEaL~~EvqrL~ql 416 (416)
.|..+.+++ .-.-|.|+.|..+|.+|
T Consensus 439 ~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~L 481 (508)
T KOG3091|consen 439 ELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKL 481 (508)
T ss_pred HHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHH
No 438
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=57.82 E-value=80 Score=31.47 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=10.4
Q ss_pred CCCCCCccccccccccCC
Q 014879 246 IAPTVRHCRSVSMDSYMG 263 (416)
Q Consensus 246 ~~p~~rH~rS~SmDs~~~ 263 (416)
|-|-+|..-|.-+|-.+.
T Consensus 121 icP~rreLYsQcFDElIR 138 (259)
T KOG4001|consen 121 ICPIRRELYSQCFDELIR 138 (259)
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 566666665555555443
No 439
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=57.80 E-value=1.3e+02 Score=26.31 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 358 QTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLF 408 (416)
Q Consensus 358 qsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~ 408 (416)
-.....+..+++.+++++..|..+|..|+.++..|+.. +|.+.|.-+.
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg---~~~i~e~AR~ 96 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG---RDYIEERARS 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHH
Confidence 34445566666666677777777777777777777666 4444444333
No 440
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=57.74 E-value=90 Score=32.20 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 014879 378 LTSENNELKFRLQA 391 (416)
Q Consensus 378 L~sEN~ELK~RLqa 391 (416)
+..+..+|..++..
T Consensus 105 ~~~~l~~l~~~~~~ 118 (372)
T PF04375_consen 105 LQQQLAELQQQLAA 118 (372)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 441
>PRK11281 hypothetical protein; Provisional
Probab=57.64 E-value=1.9e+02 Score=34.72 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHhh
Q 014879 354 VQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ-LKD---------GINSFLLFYYLLLL 414 (416)
Q Consensus 354 Vq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq-Lrd---------ALnEaL~~EvqrL~ 414 (416)
++.+...|..|+.++..+.++...+..+|...|..++.+.|+.+ +++ +|-+.|.++.++|-
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~LP 350 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALP 350 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 44555778889999998888999999999888888888777643 232 66777777777764
No 442
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.54 E-value=76 Score=36.70 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL 389 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL 389 (416)
+.+|+.....-..|..+...|.+-+..+..||+.|..-+
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333444444444444445555555554433
No 443
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=57.49 E-value=1.4e+02 Score=27.84 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014879 337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 337 rRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ 414 (416)
...++.-++.|..|..++...+.+...+...|..++. .|....+.|+.....+.....=..+..+.|+.||.+++
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLN 176 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3444455556666666666666666666666555543 33444445555554444444333455666677776654
No 444
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=57.32 E-value=2e+02 Score=34.83 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDS 375 (416)
Q Consensus 335 SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~ 375 (416)
.|++.-..-++++++++..+...+.+...+..++..++.+.
T Consensus 872 ~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l 912 (1353)
T TIGR02680 872 HAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRL 912 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555544444444444444444443
No 445
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=57.27 E-value=3.7 Score=35.62 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 358 QTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 358 qsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.+.-.+..+++.|+.+...|..|..+|+.+++.|+++.
T Consensus 5 d~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 5 DNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp --------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444455555555555566666666555543
No 446
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.22 E-value=1.8e+02 Score=29.00 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 014879 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ--AQLKDGINSFLLFY 409 (416)
Q Consensus 339 SReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ--aqLrdALnEaL~~E 409 (416)
.|..||.-.++|...+..-..+...|..++..++... ..-|++++..+..++.. ..+++++.+.-...
T Consensus 154 ~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~ 223 (240)
T cd07667 154 KRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQNNKRQDFRQLLMGMADKN 223 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333344455555666555554 55666777777776654 45666666543333
No 447
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.16 E-value=40 Score=37.45 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTI----------------------------LQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~----------------------------Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
+..+.+|+..+..|+.++..|..+|.. -+.....|..||..|+.+|+.|+..
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q ss_pred HHHHHHHH-----HHHHHHHHHhh
Q 014879 396 AQLKDGIN-----SFLLFYYLLLL 414 (416)
Q Consensus 396 aqLrdALn-----EaL~~EvqrL~ 414 (416)
...-.... .....|+..|+
T Consensus 589 ~~~~~~~~p~~~~~~~~~e~~~l~ 612 (722)
T PF05557_consen 589 NSQPVDAVPTSSLESQEKEIAELK 612 (722)
T ss_dssp T----------------HHHHHHH
T ss_pred CCCCcccccchhhhhhHHHHHHHH
No 448
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=57.09 E-value=76 Score=25.29 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTIL 371 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~L 371 (416)
...+..++.+++.++.||..|..++..|
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 449
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.06 E-value=2.3e+02 Score=28.88 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 345 RYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 345 ~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
.....|......++.|+.........|+.-|-.|..+|+.|+....
T Consensus 50 Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~ 95 (309)
T PF09728_consen 50 KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESK 95 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777778888888877888888888888888888876543
No 450
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=56.53 E-value=97 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 359 TEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 359 sENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
.+|..|..++..-+.++..|..-...|+.+|.+
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 451
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.18 E-value=1.9e+02 Score=30.28 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNE---LKFRLQAMEQQAQLKD 400 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~E---LK~RLqaLEqQaqLrd 400 (416)
+.+|..++..++.+...|..++..|+++...+..+-.. ...++..|+.+.++..
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~ 368 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNK 368 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666665555555444332 2234444444444333
No 452
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=56.07 E-value=47 Score=35.34 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=11.1
Q ss_pred CCCcccccccccc-CCCC
Q 014879 249 TVRHCRSVSMDSY-MGNL 265 (416)
Q Consensus 249 ~~rH~rS~SmDs~-~~~l 265 (416)
..+|+..+.+|.- |.+|
T Consensus 169 gir~~~~v~vd~~l~k~L 186 (391)
T smart00435 169 SIRYYNEVEVDKQVFKNL 186 (391)
T ss_pred CcEEEEEEecCHHHHHHH
Confidence 4578888887765 4443
No 453
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=56.06 E-value=95 Score=31.94 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHHhhcC
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-----AQLKDGINS-FLLFYYLLLLHL 416 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-----aqLrdALnE-aL~~EvqrL~ql 416 (416)
||..|...-..|..+...-.++-..|..++..-..|-.+++.+|+.|.+| +|||.+|-+ |+..+..||..+
T Consensus 109 ~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~e 185 (330)
T KOG2991|consen 109 DITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGE 185 (330)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHH
No 454
>PRK11281 hypothetical protein; Provisional
Probab=55.98 E-value=93 Score=37.15 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014879 324 KRAKRILANRQSAARSKERK 343 (416)
Q Consensus 324 KR~KRiLkNRESArRSReRK 343 (416)
+...|+-.||.-.+.-+.+.
T Consensus 160 RAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 160 RAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445566666555555443
No 455
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=55.90 E-value=2.2e+02 Score=28.28 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=58.6
Q ss_pred hhhhhhhHhhhhccCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 014879 308 KIWANEKLAEIALSDPKRAKR-ILANRQSAARSKERKMRYISELEQKVQTLQTEATT----LSAQVTILQRDSAGLTSEN 382 (416)
Q Consensus 308 Ki~~~~~LaElAl~DpKR~KR-iLkNRESArRSReRKk~YleELE~KVq~LqsENs~----Ls~Qlt~Lqre~~~L~sEN 382 (416)
+.+..-.|+++-..+-+++.. .-..|+-+..--+....|...|..-|+.|+.-... +..+++..+.++-....+-
T Consensus 72 ~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kcea 151 (238)
T PF14735_consen 72 KAAKSWQLPELLREEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEA 151 (238)
T ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHH
Confidence 444455666664322222221 12445566666677789999999999999875443 2334444444444455555
Q ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 014879 383 NELKFRLQAMEQ------------QAQLKDGINSFLLFYYLL 412 (416)
Q Consensus 383 ~ELK~RLqaLEq------------QaqLrdALnEaL~~Evqr 412 (416)
-.+|.|+-.++. -..||+-|.++++..-+.
T Consensus 152 m~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~ 193 (238)
T PF14735_consen 152 MILKLRVLELEILSDTYTPETVPALRKIRDHLEEAIEELEQE 193 (238)
T ss_pred HHHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444333 236666666666554443
No 456
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=55.78 E-value=2.7e+02 Score=31.89 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFR 388 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~R 388 (416)
.+..|+.+.....++++.++.++..+..+...++++
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443333333333
No 457
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=55.58 E-value=1.2e+02 Score=27.13 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 346 YISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 346 YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
++.++..++..|+........++..+.+++..|...--.|-.+++
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555555555655555555555444444433333
No 458
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=55.58 E-value=2e+02 Score=27.65 Aligned_cols=59 Identities=27% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014879 353 KVQTLQTEATTLSAQVTILQRDS-------AGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYL 411 (416)
Q Consensus 353 KVq~LqsENs~Ls~Qlt~Lqre~-------~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~Evq 411 (416)
+...|++|-..|..++.+++.+. .-+..+-..++.+++.+++. ..|++.+|..-..|.+
T Consensus 151 ~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae 217 (240)
T PF12795_consen 151 QRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAE 217 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333 33333334444555555544 3455555555555544
No 459
>PF14645 Chibby: Chibby family
Probab=55.41 E-value=40 Score=29.91 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 351 EQKVQTLQTEATTLSAQVTILQRDSAGLTS 380 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s 380 (416)
..+.+.|+.||+-|.-++..|..=.+..+.
T Consensus 77 ~~~n~~L~EENN~Lklk~elLlDMLtetta 106 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELLLDMLTETTA 106 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665543333333
No 460
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=55.39 E-value=46 Score=34.23 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA 391 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa 391 (416)
|+.++..++.++..|..++..|..+...+..+..+|+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 6 LEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444433
No 461
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.23 E-value=2.1e+02 Score=27.91 Aligned_cols=68 Identities=13% Similarity=0.225 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQA 396 (416)
Q Consensus 329 iLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQa 396 (416)
+.+-...+.|.-..-+.....|...++.-+.+-.....+-..++.+...|..|...+..+|..|..|.
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666667777777777777777777777777788888888888877777776553
No 462
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=55.23 E-value=36 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 348 SELEQKVQTLQTEATTLSAQVTILQR 373 (416)
Q Consensus 348 eELE~KVq~LqsENs~Ls~Qlt~Lqr 373 (416)
.....++..|+.||..|.+++..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777788888888888877653
No 463
>PRK10963 hypothetical protein; Provisional
Probab=55.19 E-value=44 Score=32.05 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLF 408 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~ 408 (416)
.|.+++.|+.+|..|..++..|. ....+|..+-.++..+..+.--.+.+.+.+..
T Consensus 42 ~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~ 96 (223)
T PRK10963 42 VEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAADSLQDMLMR 96 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
No 464
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.09 E-value=1.8e+02 Score=27.18 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 367 QVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 367 Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
++..+......|.....+|+.+|+.|
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 465
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=55.05 E-value=54 Score=34.14 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879 354 VQTLQTEATTLSAQVTILQR-----DSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 354 Vq~LqsENs~Ls~Qlt~Lqr-----e~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~ql 416 (416)
++.+++.-..+.+.+-..-. ++..|..||.+||+++..|+++.+ ..+.+..|-.+|+.+
T Consensus 33 ~e~~r~~~~d~~ap~~~~~~~p~~~~y~~L~~EN~~Lk~Ena~L~~~l~----~~e~l~~En~~Lr~l 96 (337)
T PRK14872 33 YEKIQDTFVSLCSKFFPKFRQGPSSHALVLETENFLLKERIALLEERLK----SYEEANQTPPLFSEI 96 (337)
T ss_pred HHHHHHhhHHHhchhhHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
No 466
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=55.02 E-value=3e+02 Score=29.63 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=8.4
Q ss_pred HhhhhccCHHHHHHHHHH
Q 014879 315 LAEIALSDPKRAKRILAN 332 (416)
Q Consensus 315 LaElAl~DpKR~KRiLkN 332 (416)
|+++-....+++++.|+.
T Consensus 267 l~~l~~~~~~~l~~~L~~ 284 (582)
T PF09731_consen 267 LAELKEEEEEELERALEE 284 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444555555443
No 467
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=54.93 E-value=34 Score=39.65 Aligned_cols=7 Identities=57% Similarity=0.999 Sum_probs=4.0
Q ss_pred hhHHHHH
Q 014879 173 ADDLFNE 179 (416)
Q Consensus 173 ~~dl~~~ 179 (416)
-||||..
T Consensus 655 n~dlfak 661 (1102)
T KOG1924|consen 655 NDDLFAK 661 (1102)
T ss_pred chHHHHH
Confidence 4666654
No 468
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=54.86 E-value=1e+02 Score=35.66 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 363 TLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 363 ~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
.|.++++.|+.+...+..-+..|+...-.|
T Consensus 96 dle~~l~klE~el~eln~n~~~L~~n~~eL 125 (829)
T KOG2189|consen 96 DLEEQLEKLESELRELNANKEALKANYNEL 125 (829)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555555555555555444433
No 469
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.85 E-value=2e+02 Score=31.71 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=56.8
Q ss_pred hhHhhhhccCHHHHH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Q 014879 313 EKLAEIALSDPKRAK--RILANRQSAARSKERKM-------RYISELEQKVQTLQTEATTLSAQVTI-----------LQ 372 (416)
Q Consensus 313 ~~LaElAl~DpKR~K--RiLkNRESArRSReRKk-------~YleELE~KVq~LqsENs~Ls~Qlt~-----------Lq 372 (416)
..+.+++..+.|+-+ -..+-++-+.+-++|-. .|++.|+.++..+....-.|..|... |.
T Consensus 252 qh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr 331 (521)
T KOG1937|consen 252 QHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLR 331 (521)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444433 34455667777777754 57777777777776666665554432 11
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 373 RDSAGLT------SENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 373 re~~~L~------sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
.+...+. .+.++|.+.|+++.++.+-++.+++.|..|+++|
T Consensus 332 ~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 332 EELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 1222222 2233444445555555666677888888888765
No 470
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.82 E-value=2.9e+02 Score=30.80 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQV 368 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Ql 368 (416)
|+.-|.+++.|+.....|+.|+
T Consensus 339 ie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 339 IELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3444455555555555555544
No 471
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.69 E-value=3e+02 Score=29.98 Aligned_cols=101 Identities=23% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 311 ANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 311 ~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
++++|.+.-. ..+=.+.++.+|+.-=..|..-+.+==.-.+.++.|...+...+...-.++..+.+.-..| .++.
T Consensus 242 sPeKL~~~le----emk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~l-ke~~ 316 (446)
T KOG4438|consen 242 SPEKLKEALE----EMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVEL-KEIL 316 (446)
T ss_pred CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879 391 AMEQQAQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 391 aLEqQaqLrdALnEaL~~EvqrL~ql 416 (416)
.||+|-.+.+...++++-+-+...||
T Consensus 317 ~Le~q~e~~~~e~~~lk~~e~~~kqL 342 (446)
T KOG4438|consen 317 ELEDQIELNQLELEKLKMFENLTKQL 342 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.60 E-value=83 Score=34.02 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred cChHHHHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTS 380 (416)
Q Consensus 301 ~s~~e~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~s 380 (416)
|.++++.|-+-.-.-...++-+.|.-||.|.- +-+++-+++++.--+.|+.+ .+....+.+++.+..+..
T Consensus 31 Fgs~cie~wl~k~~~~~cp~c~~katkr~i~~--------e~alR~qa~dt~~~~rle~q--~~T~~ctree~t~k~~~~ 100 (463)
T KOG1645|consen 31 FGSQCIEKWLGKKTKMQCPLCSGKATKRQIRP--------EYALRVQAMDTENEQRLEEQ--RRTHTCTREEKTNKEHVE 100 (463)
T ss_pred ccHHHHHHHHhhhhhhhCcccCChhHHHHHHH--------HHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHH
Q 014879 381 ENNELKFRLQA 391 (416)
Q Consensus 381 EN~ELK~RLqa 391 (416)
-|.|+.++||+
T Consensus 101 lt~e~~~~lqq 111 (463)
T KOG1645|consen 101 LTAELRAQLQQ 111 (463)
T ss_pred hhHHHHHhhhh
No 473
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=54.54 E-value=1.1e+02 Score=34.80 Aligned_cols=80 Identities=19% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 334 ESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
+++.+..-| --+.|...-..|..+|..|...++.++..+..+..+-.+|..++.+.++++...+...|-++.|+..+
T Consensus 33 e~~~~~~~~---~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki 109 (698)
T KOG0978|consen 33 EELARRLNR---VEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKI 109 (698)
T ss_pred HHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHH
Q ss_pred hcC
Q 014879 414 LHL 416 (416)
Q Consensus 414 ~ql 416 (416)
+++
T Consensus 110 ~~~ 112 (698)
T KOG0978|consen 110 RRR 112 (698)
T ss_pred HHH
No 474
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.48 E-value=68 Score=25.60 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 352 QKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQ 390 (416)
Q Consensus 352 ~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLq 390 (416)
.||..|..+.++|..++..|..+...|..+-...|....
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=54.46 E-value=1.2e+02 Score=24.94 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEA---TTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ--------QAQLKDGINSFLLFYYLL 412 (416)
Q Consensus 344 k~YleELE~KVq~LqsEN---s~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq--------QaqLrdALnEaL~~Evqr 412 (416)
...+..|+...+.+-+.. ..++.++..+..++..+..+-+.+-.+|..... ..+.+-...+.|..+++.
T Consensus 21 ~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~ 100 (117)
T smart00503 21 SQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKE 100 (117)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHH
Q ss_pred hhc
Q 014879 413 LLH 415 (416)
Q Consensus 413 L~q 415 (416)
+.+
T Consensus 101 ~m~ 103 (117)
T smart00503 101 VMN 103 (117)
T ss_pred HHH
No 476
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=54.29 E-value=1.1e+02 Score=34.40 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhHhhhhccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 014879 312 NEKLAEIALSDP-KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAG---LTSENNELKF 387 (416)
Q Consensus 312 ~~~LaElAl~Dp-KR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~---L~sEN~ELK~ 387 (416)
.++++=+...|. +|+++++.-=......-+=+++=-...+.+++.-|.|. -|++|+..++++.-. -..|-.+|+.
T Consensus 176 ~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~-~Lreqlk~i~~eLg~~~~~~~~~~~~~~ 254 (775)
T TIGR00763 176 DELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREY-YLREQLKAIKKELGIEKDDKDELEKLKE 254 (775)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCchhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879 388 RLQAMEQQAQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 388 RLqaLEqQaqLrdALnEaL~~EvqrL~ql 416 (416)
+|.++. +-+...+.+..|+.||..|
T Consensus 255 k~~~~~----~~~~~~~~~~~e~~~~~~~ 279 (775)
T TIGR00763 255 KLEELK----LPEEVKKVIEKELTKLSLL 279 (775)
T ss_pred HHHhcC----CCHHHHHHHHHHHHHHHcC
No 477
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.26 E-value=1.7e+02 Score=28.67 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGI 402 (416)
Q Consensus 336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdAL 402 (416)
|...++.=...+..++..+..+......|..++..|+.++..+..+...|+.+...-+-+.++...+
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~ 156 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSL 156 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=54.17 E-value=1.3e+02 Score=25.04 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 014879 350 LEQKVQTLQTEATTLSAQVTILQRDSAGLTSEN---NELKFRLQA-MEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 350 LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN---~ELK~RLqa-LEqQaqLrdALnEaL~~EvqrL 413 (416)
|...|..|..|+..|..++..++.++..+..+. ..++..++. |.+..-|+ +.=|..|
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK-------~QAVNKL 61 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLK-------QQAVNKL 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHH-------HHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
No 479
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=54.16 E-value=85 Score=31.86 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYY 410 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~Ev 410 (416)
|.||..+...+..|...|........++...+..+..+|+.++..++....+.+...+.+....
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVT 64 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 480
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=54.16 E-value=1.4e+02 Score=25.67 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
.+.+.+++.+--.+...|..|..++..|.++...-.. +-+++.+|..++...+-......+++.=++.|
T Consensus 16 ~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l 84 (106)
T PF05837_consen 16 QEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.10 E-value=53 Score=33.35 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSF 405 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEa 405 (416)
|++.+.+++.+++..+.+......++..++.++..|..+-.+...+.+.++++.+.-..-.+.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 482
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.30 E-value=89 Score=34.81 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhh
Q 014879 356 TLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQA---------------------MEQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 356 ~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqa---------------------LEqQaqLrdALnEaL~~EvqrL~ 414 (416)
.+..+...|..++..|+.++..|..++..|..+|.. ..+..+++....++|+.|.++|+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~ 579 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLL 579 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHH
No 483
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=53.30 E-value=67 Score=34.72 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 336 ArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q 415 (416)
|.+-++.-++|++.||.+-+.- +...+..+...+..|+.+|-++|..++.+..--+-+...++.+-.+|.|
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~---------~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDV---------SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PHA03011 hypothetical protein; Provisional
Probab=53.28 E-value=98 Score=27.79 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 351 EQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 351 E~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
|.....+......|.+|...|..++.-++.|-+.|.+-+|.-...-+.-.+..+.|++.|..|
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
No 485
>PRK15396 murein lipoprotein; Provisional
Probab=53.24 E-value=90 Score=26.23 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAM 392 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaL 392 (416)
+++|..+|+.|..+...|...+..+..+.+....|-..--+||..+
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=52.94 E-value=2.4e+02 Score=27.81 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
Q 014879 323 PKRAKRILANRQSAARSKERK--MRYISELEQKVQTLQTEATTLSAQVTILQRD-------------------SAGLTSE 381 (416)
Q Consensus 323 pKR~KRiLkNRESArRSReRK--k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre-------------------~~~L~sE 381 (416)
.+++.++..++..+.....-+ ...+..++.++..|+.+...+..++..++.. +.....+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~ 190 (301)
T PF14362_consen 111 DQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQ 190 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Q 014879 382 NNELKFRLQAMEQQAQLKDGINSFLL----FYYLLL 413 (416)
Q Consensus 382 N~ELK~RLqaLEqQaqLrdALnEaL~----~EvqrL 413 (416)
...+..+++.+..+ .+.....++ .+.++|
T Consensus 191 ~~~~~~~l~~l~~~---~~~~~~~l~~~~~~~~~~l 223 (301)
T PF14362_consen 191 LDAAQAELDTLQAQ---IDAAIAALDAQIAARKARL 223 (301)
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHhhHHHHHHHH
No 487
>PRK11020 hypothetical protein; Provisional
Probab=52.89 E-value=88 Score=28.37 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Q 014879 357 LQTEATTLSAQVTILQRDSAGLTSENN-----ELKFRLQAMEQQ-AQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 357 LqsENs~Ls~Qlt~Lqre~~~L~sEN~-----ELK~RLqaLEqQ-aqLrdALnEaL~~EvqrL~ql 416 (416)
+.+|.+.|..++..+++....+..... +++..+.+|+.+ ++|+.....-|..|-+.|..|
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~l 68 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKL 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 488
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.87 E-value=2.8e+02 Score=30.47 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhhccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 014879 316 AEIALSDPKRAKRILANRQ-SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRL----- 389 (416)
Q Consensus 316 aElAl~DpKR~KRiLkNRE-SArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RL----- 389 (416)
.|.-..+.||.|-|+.-.+ -|.--++.=+..+..||..+..|......|......|..+.+.+..+...|+.||
T Consensus 274 eE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 274 EESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014879 390 ------QAMEQQAQLKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 390 ------qaLEqQaqLrdALnEaL~~EvqrL~ql 416 (416)
+.|.+-.+=+.+..|.+.+=...|+||
T Consensus 354 l~~rm~d~Lrrfq~ekeatqELieelrkelehl 386 (502)
T KOG0982|consen 354 LRVRMNDILRRFQEEKEATQELIEELRKELEHL 386 (502)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 489
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=52.81 E-value=2e+02 Score=29.38 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQ 394 (416)
Q Consensus 326 ~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEq 394 (416)
.+.+....+.+..-++.+.+-+...+..+..++.+..+...++..++.+...+.....+|+.+-..|..
T Consensus 181 a~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 181 AKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=52.56 E-value=86 Score=35.74 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HH
Q 014879 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-----------------------AQ 397 (416)
Q Consensus 341 eRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-----------------------aq 397 (416)
+++.-....||.+.-.|.+|...|+-+++.|+++...-+...+.-..-+|.+.+- ++
T Consensus 163 QqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~ 242 (861)
T KOG1899|consen 163 QQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAP 242 (861)
T ss_pred HHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 014879 398 LKDGINSFLLFYYLLLLHL 416 (416)
Q Consensus 398 LrdALnEaL~~EvqrL~ql 416 (416)
|++.+.|.-.+|...+++|
T Consensus 243 L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 243 LREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred HHHHHhhhhhHHHHHHHHH
No 491
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.53 E-value=1.7e+02 Score=33.09 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 322 DPKRAKRILANRQSAARSKERKMRYISE----LEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQ 397 (416)
Q Consensus 322 DpKR~KRiLkNRESArRSReRKk~YleE----LE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaq 397 (416)
|-|+.|..+.|-+.-..+=.++-.-+.+ +|.+--.|..|...+.-+-+.|..++..|..||=.|..++..|.+..
T Consensus 115 eLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ- 193 (772)
T KOG0999|consen 115 ELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQ- 193 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh-
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014879 398 LKDGINSFLLFYYLLLL 414 (416)
Q Consensus 398 LrdALnEaL~~EvqrL~ 414 (416)
+..|-|+-||.||+
T Consensus 194 ---VEyEglkheikRle 207 (772)
T KOG0999|consen 194 ---VEYEGLKHEIKRLE 207 (772)
T ss_pred ---hhhhHHHHHHHHHH
No 492
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.37 E-value=96 Score=30.16 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 014879 347 ISELEQKVQTLQTEATTLSAQVTILQRDS--AGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLL 412 (416)
Q Consensus 347 leELE~KVq~LqsENs~Ls~Qlt~Lqre~--~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~Evqr 412 (416)
+.-|+.||+.|+.+.....++|..|+.-+ ..|..+.++|+..+..++.. ..|+.+.|.+-.++...
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~ 156 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQ 156 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
No 493
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.34 E-value=66 Score=31.59 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 343 KMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 343 Kk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
|++.+++||.+-.+|..+.+.=..|...|+ .|..|..+++.++..|..|.--+ ..-..|-++|.+.
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~----~lr~Ql~emee~~~~llrQLPs~-tEmp~Ll~dv~q~ 112 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLE----ALRAQLAEMEERFDILLRQLPSD-TEMPNLLADVNQA 112 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHHHhCCcc-cchhHHHHHHHHh
No 494
>PF14282 FlxA: FlxA-like protein
Probab=52.27 E-value=84 Score=27.11 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQT----EATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ 395 (416)
Q Consensus 344 k~YleELE~KVq~Lqs----ENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ 395 (416)
++.|..|..+++.|.. -...-..++..|+.++..|..+...|..+......+
T Consensus 25 ~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 25 QKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.24 E-value=1.7e+02 Score=27.99 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 014879 344 MRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQ-AQLKDGINSFLLFYYLL 412 (416)
Q Consensus 344 k~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQ-aqLrdALnEaL~~Evqr 412 (416)
.....-|+.++..|..++..|...+........-+..+-..++.+++.+++. ..|++.+|..-..|.+.
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~ 218 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQ 218 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=52.21 E-value=84 Score=35.52 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHhhhhhhhHhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014879 306 LKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNEL 385 (416)
Q Consensus 306 ~kKi~~~~~LaElAl~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~EL 385 (416)
|-+-+.+=-|...-+.|-|-+--|.+| +|-.||..|..|+.-|+.++...++-...|..++++|
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKN----------------DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~el 362 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKN----------------DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIREL 362 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHH----------------HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 014879 386 KFRLQAMEQQAQLK 399 (416)
Q Consensus 386 K~RLqaLEqQaqLr 399 (416)
...|..+.+.+...
T Consensus 363 EEElk~~k~ea~~a 376 (832)
T KOG2077|consen 363 EEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHHHHHHH
No 497
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=52.12 E-value=1.3e+02 Score=28.07 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879 355 QTLQTEATTLSAQVTIL--QRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 355 q~LqsENs~Ls~Qlt~L--qre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q 415 (416)
...+.|...|..+|... ..+...|..+...|..++.+.+.....++++.+.-+.|.+.+.+
T Consensus 59 d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~~ 121 (168)
T PF06102_consen 59 DYREKEIKELKKQLKKTKDPEEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVKQ 121 (168)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 498
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=51.94 E-value=2.3e+02 Score=30.99 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014879 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLL 413 (416)
Q Consensus 334 ESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL 413 (416)
..-.+++.+=.+.+..|+...+....-+..|..++..|.++.........++......|+++..-+....+.|++.-++|
T Consensus 78 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l 157 (779)
T PRK11091 78 EQLEESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLL 157 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcC
Q 014879 414 LHL 416 (416)
Q Consensus 414 ~ql 416 (416)
+.+
T Consensus 158 ~~i 160 (779)
T PRK11091 158 RSF 160 (779)
T ss_pred HHH
No 499
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.89 E-value=2.9e+02 Score=30.78 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 014879 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQRDSAGLTSENNE--------LKFRLQAM 392 (416)
Q Consensus 321 ~DpKR~KRiLkNRESArRSReRKk~YleELE~KVq~LqsENs~Ls~Qlt~Lqre~~~L~sEN~E--------LK~RLqaL 392 (416)
.||++..+ +.|.....=-...-....+......+.|+.+...|..++...+.+....+.+|.. ..++|..+
T Consensus 164 ~dP~~Aa~-iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l 242 (754)
T TIGR01005 164 EDPKLAAA-IPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAEL 242 (754)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 014879 393 EQQAQLKDGINSFLLFYYLLLL 414 (416)
Q Consensus 393 EqQaqLrdALnEaL~~EvqrL~ 414 (416)
++|.....+.....+...+.|+
T Consensus 243 ~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 243 NTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK10963 hypothetical protein; Provisional
Probab=51.88 E-value=53 Score=31.50 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014879 368 VTILQRDSAGLTSENNELKFRLQAMEQQAQLKDGINSFLLFYYLLLLH 415 (416)
Q Consensus 368 lt~Lqre~~~L~sEN~ELK~RLqaLEqQaqLrdALnEaL~~EvqrL~q 415 (416)
+.+.+++...|..+|++|+.+|..|-..++-.+++.+.++.=+.+|..
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~ 86 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAA 86 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!