Query 014881
Match_columns 416
No_of_seqs 199 out of 518
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2641 Predicted seven transm 100.0 5.9E-79 1.3E-83 615.3 30.6 310 6-318 32-356 (386)
2 PF03619 Solute_trans_a: Organ 100.0 8.4E-76 1.8E-80 574.3 27.6 264 7-270 1-274 (274)
3 COG3833 MalG ABC-type maltose 63.8 38 0.00082 34.1 8.4 75 11-99 79-155 (282)
4 PF00558 Vpu: Vpu protein; In 47.6 24 0.00053 29.1 3.5 41 7-49 3-43 (81)
5 KOG2927 Membrane component of 43.7 18 0.0004 37.4 2.7 65 119-207 205-275 (372)
6 PF04144 SCAMP: SCAMP family; 39.8 2E+02 0.0044 26.7 8.8 13 111-123 2-16 (177)
7 COG1480 Predicted membrane-ass 36.2 1.9E+02 0.0041 32.8 9.1 18 199-216 471-488 (700)
8 PF07301 DUF1453: Protein of u 33.4 2.6E+02 0.0057 25.6 8.2 71 16-93 5-75 (148)
9 PF06609 TRI12: Fungal trichot 29.0 8E+02 0.017 27.4 12.6 146 39-209 160-308 (599)
10 PF14126 DUF4293: Domain of un 24.2 5.4E+02 0.012 23.3 9.9 52 13-68 55-108 (149)
11 PF14667 Polysacc_synt_C: Poly 22.0 4.8E+02 0.01 21.9 11.0 71 20-92 68-144 (146)
12 COG4122 Predicted O-methyltran 21.9 36 0.00078 33.0 0.5 24 386-409 128-151 (219)
13 PF02285 COX8: Cytochrome oxid 21.5 83 0.0018 23.1 2.2 28 12-39 16-43 (44)
No 1
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-79 Score=615.27 Aligned_cols=310 Identities=43% Similarity=0.803 Sum_probs=289.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhHHhhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 014881 6 VPFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIY 85 (416)
Q Consensus 6 ~p~~~~~iag~~~~la~~iS~~~I~~Hl~~Yt~P~~Qr~IiRIL~MvPIYAi~S~lsL~~Pra~iy~~~iRd~YEAfvIY 85 (416)
++.+.+.+|+.++++|+.+++++|++||+||++|++||+|+||++|+||||+.||+|++.|+.++|++++||||||||||
T Consensus 32 ~~~~~~~~a~~f~vit~~ls~~~I~~HL~~y~~P~~qr~iv~il~mvPIys~~S~vsl~~p~~~~~~~~vr~~Yeaf~ly 111 (386)
T KOG2641|consen 32 LLTVALAIASFFVVITILLSLFHIYQHLRYYSNPREQRPIVRILFMVPIYSVASFVSLLVPRVAFYLDTVRECYEAFVLY 111 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhchhhhhhhhhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHhhCCCcccc-cccccccCCCCC-CChhHHHHhhcceeehhhHHHHHHHHHHHHHHcCcccC
Q 014881 86 NFLSLCLAWVGGPGAVVLSLSGRVLKPS-VCLMTCCLPPVP-LDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKD 163 (416)
Q Consensus 86 ~Ff~Ll~~ylGG~~~~v~~l~~~~~~~~-~~~~~CClp~~~-~~~~fLr~~K~gVLQyvivKPl~~iv~iIl~~~G~Y~~ 163 (416)
+|++||++|+|||++++..+++++.+.+ .+|+|||+||+. ++++++|+||+||+||+|+||+++++++++++.|+|++
T Consensus 112 ~F~sLl~~ylGGe~~~v~~l~~~~~~~~~~~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~lv~lvl~~~g~y~~ 191 (386)
T KOG2641|consen 112 VFLSLLFHYLGGEQNIVTELEGRLIRVNHTPPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKPFLALVTLVLYAFGVYDD 191 (386)
T ss_pred HHHHHHHHHcCChHHHHHHHhccCCcccCCCCceeccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988844 455566666543 79999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----
Q 014881 164 GNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIEN----- 238 (416)
Q Consensus 164 g~~s~~~a~lyl~iI~niSv~lALY~L~lFy~~~k~~L~p~~P~~KFl~IKlVVFlsfwQ~~ii~lL~~~G~I~~----- 238 (416)
|++++ |+|+++++|+|+++|+|||.+||+++||+|.||||+.||+|+|+|||+++|||+++.++.+.|.++.
T Consensus 192 g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l~~~g~~~~~~~~~ 268 (386)
T KOG2641|consen 192 GDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIVLAILVKLGKIGPSYFDE 268 (386)
T ss_pred CCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchh
Confidence 99987 8999999999999999999999999999999999999999999999999999999999999999982
Q ss_pred -hhHHHHhhhhHHHHHHHHHHHHhhhcccccccccccCCC-------CcchHHHHHhhcCcchHHHHHHhhcccccccee
Q 014881 239 -TDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGG-------SRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYV 310 (416)
Q Consensus 239 -~~~a~~iqn~LiCvEM~ifAilh~~AFp~k~Y~~~~~~~-------~~~~~~sl~~~~~~~D~~~D~~~~f~~~y~~y~ 310 (416)
...+.++||+++|+||+++|++|+||||+++|...+... ..+..+.++|+++++|..+|..|+|+|+|++|.
T Consensus 269 ~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 348 (386)
T KOG2641|consen 269 VGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALFDERSCDYRSVDMFSISSSLWDSLMPNDLCSDAIRNFSPTYQDYT 348 (386)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhccccccccccccccccccchHHHHhhcccCcccccccCCCccccccc
Confidence 345899999999999999999999999999998776554 445778999999999999999999999999999
Q ss_pred eeccCCCC
Q 014881 311 LYNHNEGD 318 (416)
Q Consensus 311 ~~~~~~~~ 318 (416)
.+++.++.
T Consensus 349 ~~~~~~~~ 356 (386)
T KOG2641|consen 349 PQSDQDAL 356 (386)
T ss_pred ccccCccc
Confidence 99865554
No 2
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=8.4e-76 Score=574.31 Aligned_cols=264 Identities=47% Similarity=0.882 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhHHhhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 014881 7 PFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYN 86 (416)
Q Consensus 7 p~~~~~iag~~~~la~~iS~~~I~~Hl~~Yt~P~~Qr~IiRIL~MvPIYAi~S~lsL~~Pra~iy~~~iRd~YEAfvIY~ 86 (416)
+.+.+++||+|+++|+++|+++|++|++||++|++||+|+||++|+||||++||+|+++||+++|+|++||+|||+++|+
T Consensus 1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~ly~ 80 (274)
T PF03619_consen 1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVLYS 80 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHhhCCCccc-cccc--ccccCCCCCCChhHHHHhhcceeehhhHHHHHHHHHHHHHHcCcccC
Q 014881 87 FLSLCLAWVGGPGAVVLSLSGRVLKP-SVCL--MTCCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKD 163 (416)
Q Consensus 87 Ff~Ll~~ylGG~~~~v~~l~~~~~~~-~~~~--~~CClp~~~~~~~fLr~~K~gVLQyvivKPl~~iv~iIl~~~G~Y~~ 163 (416)
|++|+++|+|||+++++.+++++..+ .||+ +|||+|+++++++++|+||+||+||+++||+++++++++++.|.|+|
T Consensus 81 F~~Ll~~y~gg~~~~~~~l~~~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl~~~i~iil~~~g~y~~ 160 (274)
T PF03619_consen 81 FFSLLLNYLGGEEALVEVLSGKPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPLLSIISIILEAFGVYCE 160 (274)
T ss_pred HHHHHHHHhCCHHHHHHHhhcCCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999888654333 3443 24688999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCh----
Q 014881 164 GNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKSGLIENT---- 239 (416)
Q Consensus 164 g~~s~~~a~lyl~iI~niSv~lALY~L~lFy~~~k~~L~p~~P~~KFl~IKlVVFlsfwQ~~ii~lL~~~G~I~~~---- 239 (416)
|+++++++++|+++++|+|+++|||||.+||+++|++|+|+||++||+|+|+|||++|||++++++|...|++++.
T Consensus 161 ~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii~iL~~~g~i~~~~~~~ 240 (274)
T PF03619_consen 161 GSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFIISILASFGVIPCTPPWS 240 (274)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ---hHHHHhhhhHHHHHHHHHHHHhhhccccccc
Q 014881 240 ---DEAAKFQDFILCIEMLIAAVGHLFAFPYKEY 270 (416)
Q Consensus 240 ---~~a~~iqn~LiCvEM~ifAilh~~AFp~k~Y 270 (416)
+.++++||+|+|+||+++|++|+|||||+||
T Consensus 241 ~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 241 SPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4689999999999999999999999999998
No 3
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=63.83 E-value=38 Score=34.06 Aligned_cols=75 Identities=19% Similarity=0.374 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhHH--hhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Q 014881 11 IFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYI--VRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYNFL 88 (416)
Q Consensus 11 ~~iag~~~~la~~iS~~~I~~Hl~~Yt~P~~Qr~I--iRIL~MvPIYAi~S~lsL~~Pra~iy~~~iRd~YEAfvIY~Ff 88 (416)
.++|++++++++.++...=|- +.+|+-|-++.-+ .-|+-|+| ++.+.+++.. .++.+- .+=+..
T Consensus 79 liva~~t~~i~v~~~~~~aYa-fSR~rF~GRk~~L~~~LilqMfP--~~~aliAlY~-----l~~~lg------llnt~~ 144 (282)
T COG3833 79 LIVALITAAITVALVTLAAYA-FSRYRFKGRKYLLKFFLILQMFP--GVAALIALYV-----LLKLLG------LLNTLW 144 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHhc------ChhhHH
Confidence 367888888888887766663 3345556443322 35666776 3334433321 111111 222356
Q ss_pred HHHHHhcCChh
Q 014881 89 SLCLAWVGGPG 99 (416)
Q Consensus 89 ~Ll~~ylGG~~ 99 (416)
.|.+.|.||--
T Consensus 145 gLil~Y~gG~i 155 (282)
T COG3833 145 GLILAYLGGAI 155 (282)
T ss_pred HHHHHHhcCch
Confidence 78889999854
No 4
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=47.57 E-value=24 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhHHhhhh
Q 014881 7 PFFYIFIAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRII 49 (416)
Q Consensus 7 p~~~~~iag~~~~la~~iS~~~I~~Hl~~Yt~P~~Qr~IiRIL 49 (416)
|..+..+.++.+++.+.|-+|.+ -+..|++-..||.|-|.+
T Consensus 3 ~l~i~~iialiv~~iiaIvvW~i--v~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 3 SLEILAIIALIVALIIAIVVWTI--VYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp -----HHHHHHHHHHHHHHHHHH--H------------CHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHH
Confidence 33344444444444444555555 578899999999887643
No 5
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.67 E-value=18 Score=37.42 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=0.0
Q ss_pred ccCCCCCCChhHHHHhhcceeehhhHHHHHHHHHHHHHHcCcccCCCCCCCcchhhHHHHHHHHHHHHHHH----HHHHH
Q 014881 119 CCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYA----LVLFY 194 (416)
Q Consensus 119 CClp~~~~~~~fLr~~K~gVLQyvivKPl~~iv~iIl~~~G~Y~~g~~s~~~a~lyl~iI~niSv~lALY~----L~lFy 194 (416)
||+|-|| ++||+||+=+.+ +...+++.|+-. -|.=....++++++|+ +.+|-
T Consensus 205 vLFPLWP------~~mR~gvyY~si--g~~gfl~~IlvL----------------aIvRlILF~I~~il~~g~~g~W~FP 260 (372)
T KOG2927|consen 205 VLFPLWP------RRMRQGVYYLSI--GAGGFLAFILVL----------------AIVRLILFGITWILTGGKHGFWLFP 260 (372)
T ss_pred HhcccCc------HHHhcceeeeec--chhHHHHHHHHH----------------HHHHHHHHHHHHHHhCCCCceEecc
Q ss_pred HHhhhh--cCCCCCc
Q 014881 195 MACRDL--LHPFNPV 207 (416)
Q Consensus 195 ~~~k~~--L~p~~P~ 207 (416)
..+.+. |+.|+|+
T Consensus 261 NL~eDvGfleSF~PL 275 (372)
T KOG2927|consen 261 NLTEDVGFLESFKPL 275 (372)
T ss_pred chhhhhhHHHhhccc
No 6
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=39.76 E-value=2e+02 Score=26.69 Aligned_cols=13 Identities=23% Similarity=0.651 Sum_probs=7.4
Q ss_pred ccccccc--cccCCC
Q 014881 111 KPSVCLM--TCCLPP 123 (416)
Q Consensus 111 ~~~~~~~--~CClp~ 123 (416)
+++|||+ .||.+|
T Consensus 2 ~~NwPp~~~~~~~~P 16 (177)
T PF04144_consen 2 ENNWPPFPKFCCIKP 16 (177)
T ss_pred CCCCCCCccccCCCC
Confidence 4567663 456655
No 7
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=36.20 E-value=1.9e+02 Score=32.76 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=13.9
Q ss_pred hhcCCCCCcchhHHHHHH
Q 014881 199 DLLHPFNPVPKFIMIKSV 216 (416)
Q Consensus 199 ~~L~p~~P~~KFl~IKlV 216 (416)
|...|-+|+.|=+..++-
T Consensus 471 ELsnpNhPLLkkll~EAP 488 (700)
T COG1480 471 ELSNPNHPLLKKLLTEAP 488 (700)
T ss_pred HhcCCCcHHHHHHHhhCC
Confidence 556689999998887753
No 8
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=33.44 E-value=2.6e+02 Score=25.64 Aligned_cols=71 Identities=28% Similarity=0.398 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcchhhHHhhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014881 16 LCTIGATSLAIFHIYRHLLNYTEPTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLA 93 (416)
Q Consensus 16 ~~~~la~~iS~~~I~~Hl~~Yt~P~~Qr~IiRIL~MvPIYAi~S~lsL~~Pra~iy~~~iRd~YEAfvIY~Ff~Ll~~ 93 (416)
.+..+++++.+.-++.-.+.-.+|..-|+ +.++|+.-.++.+-+.+|.... +.-+.-||+++-.+|+..+-
T Consensus 5 ~s~~~~i~m~~~vi~~R~ka~~rP~~~kk----IIlPplfmstG~lmf~~P~~~~---~~~~~l~A~~~G~lFs~~Li 75 (148)
T PF07301_consen 5 ISIIIAIVMALLVIFIRMKASKRPVNGKK----IILPPLFMSTGFLMFVFPFFRP---PWLEVLEAFLVGALFSYPLI 75 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCcch----HHHhHHHHHHHHHHHhCccccc---hHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777888888788974444 5689999888888888887654 45688899999888877663
No 9
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=29.01 E-value=8e+02 Score=27.42 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=68.6
Q ss_pred cchhhHHhhhhhhhHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHhhCCCccccccccc
Q 014881 39 PTYQRYIVRIIFMVPLFAVMSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLMT 118 (416)
Q Consensus 39 P~~Qr~IiRIL~MvPIYAi~S~lsL~~Pra~iy~~~iRd~YEAfvIY~Ff~Ll~~ylGG~~~~v~~l~~~~~~~~~~~~~ 118 (416)
|...|.+--.+...|... .++.+-..-+...--...|=+|-.+.+++++.++.-++-- + +|++..
T Consensus 160 p~k~R~~~~~~~~~~~i~-~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY----------~--PP~~~~-- 224 (599)
T PF06609_consen 160 PNKWRGLGLAIASIPFII-TTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFY----------F--PPPRAQ-- 224 (599)
T ss_pred ccchhhhHhHHHHHHHHh-hhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHh----------C--CCchhh--
Confidence 666666544444444332 2222222222111124688899888998888876654421 0 111100
Q ss_pred ccCCCCCCC-hhHHHHhhcceeehhhHHHHHHHHHHHHHHcCcccCC--CCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014881 119 CCLPPVPLD-GRFIRRCKQGCVQFVILKPILVVATLILFANGKYKDG--NFSPDQGYLYITIIYTISYTMALYALVLFYM 195 (416)
Q Consensus 119 CClp~~~~~-~~fLr~~K~gVLQyvivKPl~~iv~iIl~~~G~Y~~g--~~s~~~a~lyl~iI~niSv~lALY~L~lFy~ 195 (416)
.+....+ ++.+ .++=++=-++.+..++|...|.=--| ...++++++--.++..+- .+..+++.-.|.
T Consensus 225 --~~~~~~s~~~~l-------~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~-~Lv~F~~wE~~~ 294 (599)
T PF06609_consen 225 --LHGRKLSKREQL-------KELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV-LLVAFVVWEWFG 294 (599)
T ss_pred --hccccCcHHHHH-------HHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH-HHHHHHHhhhhc
Confidence 0001111 1112 23444555666666666555542222 234567775544444443 333334444444
Q ss_pred HhhhhcCCCCCcch
Q 014881 196 ACRDLLHPFNPVPK 209 (416)
Q Consensus 196 ~~k~~L~p~~P~~K 209 (416)
..|+.+-|+|.+..
T Consensus 295 ~~~~Pl~P~~Lf~~ 308 (599)
T PF06609_consen 295 APKDPLFPHRLFKD 308 (599)
T ss_pred cCCCCcCCHHHhcc
Confidence 45666777665554
No 10
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=24.21 E-value=5.4e+02 Score=23.28 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcchhhHHhh--hhhhhHHHHHHHHHHhhccch
Q 014881 13 IAFLCTIGATSLAIFHIYRHLLNYTEPTYQRYIVR--IIFMVPLFAVMSFLSLVFPER 68 (416)
Q Consensus 13 iag~~~~la~~iS~~~I~~Hl~~Yt~P~~Qr~IiR--IL~MvPIYAi~S~lsL~~Pra 68 (416)
..++..+++.++|++.|+. |+|-..|..+++ ++.++-.|+...+.++-.+..
T Consensus 55 ~l~il~~l~~~lal~aIFl----yKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~~ 108 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIFL----YKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSGE 108 (149)
T ss_pred HHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445566788888888884 557778988877 677776667766666666654
No 11
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=22.00 E-value=4.8e+02 Score=21.93 Aligned_cols=71 Identities=17% Similarity=0.348 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhccCCCcchhhHHhhhh-----hhhHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 014881 20 GATSLAIFHIYRHLLNYTEPTYQRYIVRII-----FMVPLFAVMSFLSLVFP-ERAIYFNSIREVYEAWVIYNFLSLCL 92 (416)
Q Consensus 20 la~~iS~~~I~~Hl~~Yt~P~~Qr~IiRIL-----~MvPIYAi~S~lsL~~P-ra~iy~~~iRd~YEAfvIY~Ff~Ll~ 92 (416)
+.+++..+.+.+|. +++ .+..|.+.+++ ....++....++...+| +..-....+-.+.-..++|.++.+++
T Consensus 68 ~~~~~~~~~~~k~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~ 144 (146)
T PF14667_consen 68 VSFILNLWYVRKKI-GIK-INWRRSLIKPILASIVMAIVLYILNSLLPNIFPSRLSSLLQLLIGIIIGGIVYLLLLLLL 144 (146)
T ss_pred HHHHHHHHHHHHHh-CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554 333 33344555543 33444455555555444 23445555555556666666665543
No 12
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=21.91 E-value=36 Score=33.00 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=19.8
Q ss_pred CCCCccccceeecccCCCCCCCCC
Q 014881 386 SLSAPYDMALIDIDMSSYPAKVPA 409 (416)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~ 409 (416)
-..++|||++||.|=++||.-++.
T Consensus 128 ~~~~~fDliFIDadK~~yp~~le~ 151 (219)
T COG4122 128 LLDGSFDLVFIDADKADYPEYLER 151 (219)
T ss_pred ccCCCccEEEEeCChhhCHHHHHH
Confidence 346799999999999999975543
No 13
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=21.46 E-value=83 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 014881 12 FIAFLCTIGATSLAIFHIYRHLLNYTEP 39 (416)
Q Consensus 12 ~iag~~~~la~~iS~~~I~~Hl~~Yt~P 39 (416)
.++.....+++++-.--|..||.+|++.
T Consensus 16 aigltv~f~~~L~PagWVLshL~~YKk~ 43 (44)
T PF02285_consen 16 AIGLTVCFVTFLGPAGWVLSHLESYKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 3344444445555555677799999875
Done!