Query 014881
Match_columns 416
No_of_seqs 199 out of 518
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 38.4 43 0.0015 24.6 4.4 30 1-30 1-31 (54)
2 2knc_A Integrin alpha-IIB; tra 29.5 77 0.0026 23.2 4.5 27 4-30 8-34 (54)
3 2k1a_A Integrin alpha-IIB; sin 28.4 91 0.0031 21.6 4.5 28 3-30 5-32 (42)
4 1v54_M VIIIB, IX, cytochrome C 16.8 80 0.0027 22.4 2.3 28 13-40 17-44 (46)
5 2y69_M Cytochrome C oxidase po 12.8 1.5E+02 0.005 22.8 3.0 29 12-40 40-68 (70)
6 1zl8_A LIN-7; heterodimer, alp 12.3 1.1E+02 0.0038 22.2 2.0 13 69-81 39-51 (53)
7 1zoq_C CREB-binding protein, i 10.2 1.5E+02 0.005 21.0 2.0 28 26-53 3-30 (47)
8 1kbh_B CREB-binding protein, n 9.1 2.1E+02 0.0073 21.1 2.6 28 26-53 10-37 (59)
9 2l9u_A Receptor tyrosine-prote 7.9 5.2E+02 0.018 17.2 4.1 34 1-34 1-34 (40)
10 2l6x_A GPR, green-light absorb 6.4 1.4E+03 0.047 20.8 8.3 29 36-64 35-63 (243)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=38.37 E-value=43 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=20.3
Q ss_pred CCC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 014881 1 MGG-ESVPFFYIFIAFLCTIGATSLAIFHIY 30 (416)
Q Consensus 1 ~~~-~~~p~~~~~iag~~~~la~~iS~~~I~ 30 (416)
||. ..+|.|++++|.+..++-..+-.+..|
T Consensus 1 ~~~~~~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 1 MGLPGRVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 358999999888777666555444444
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.49 E-value=77 Score=23.17 Aligned_cols=27 Identities=7% Similarity=0.501 Sum_probs=18.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 014881 4 ESVPFFYIFIAFLCTIGATSLAIFHIY 30 (416)
Q Consensus 4 ~~~p~~~~~iag~~~~la~~iS~~~I~ 30 (416)
..+|.|++++|.+..++-+.+-.+..|
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998888766665554444444
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=28.36 E-value=91 Score=21.58 Aligned_cols=28 Identities=7% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 014881 3 GESVPFFYIFIAFLCTIGATSLAIFHIY 30 (416)
Q Consensus 3 ~~~~p~~~~~iag~~~~la~~iS~~~I~ 30 (416)
.+.+|.|++++|.+..++-..+-.+..+
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999988877766665555555
No 4
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=16.83 E-value=80 Score=22.39 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 014881 13 IAFLCTIGATSLAIFHIYRHLLNYTEPT 40 (416)
Q Consensus 13 iag~~~~la~~iS~~~I~~Hl~~Yt~P~ 40 (416)
++.....+++++----|+-||.+|++.+
T Consensus 17 igl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 17 IGLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 4444444556665566778999998873
No 5
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=12.83 E-value=1.5e+02 Score=22.84 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 014881 12 FIAFLCTIGATSLAIFHIYRHLLNYTEPT 40 (416)
Q Consensus 12 ~iag~~~~la~~iS~~~I~~Hl~~Yt~P~ 40 (416)
.++....++++++----|.-||.+|++.+
T Consensus 40 aigltv~f~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 40 AIGLSVTFLSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHSCC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 34444444555665566777999999874
No 6
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=12.31 E-value=1.1e+02 Score=22.16 Aligned_cols=13 Identities=46% Similarity=0.994 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHH
Q 014881 69 AIYFNSIREVYEA 81 (416)
Q Consensus 69 ~iy~~~iRd~YEA 81 (416)
+-+++.+||+||-
T Consensus 39 SdF~~aVREVYEh 51 (53)
T 1zl8_A 39 SEFFGAVREVYET 51 (53)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5689999999995
No 7
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=10.19 E-value=1.5e+02 Score=20.98 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=22.6
Q ss_pred HHHHHHHhccCCCcchhhHHhhhhhhhH
Q 014881 26 IFHIYRHLLNYTEPTYQRYIVRIIFMVP 53 (416)
Q Consensus 26 ~~~I~~Hl~~Yt~P~~Qr~IiRIL~MvP 53 (416)
+..+.+-+++=+.|+.|-+++.||=-=|
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILksnP 30 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 4567888888888999999999985544
No 8
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=9.09 E-value=2.1e+02 Score=21.09 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=23.3
Q ss_pred HHHHHHHhccCCCcchhhHHhhhhhhhH
Q 014881 26 IFHIYRHLLNYTEPTYQRYIVRIIFMVP 53 (416)
Q Consensus 26 ~~~I~~Hl~~Yt~P~~Qr~IiRIL~MvP 53 (416)
+..+.+-+++=+.|+.|-+++.||=-=|
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILksNP 37 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILKSNP 37 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHTTSH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCH
Confidence 4678889999899999999999985544
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=7.95 E-value=5.2e+02 Score=17.24 Aligned_cols=34 Identities=24% Similarity=0.137 Sum_probs=25.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014881 1 MGGESVPFFYIFIAFLCTIGATSLAIFHIYRHLL 34 (416)
Q Consensus 1 ~~~~~~p~~~~~iag~~~~la~~iS~~~I~~Hl~ 34 (416)
||...|.-.+..++|+.++.-++=+.++-|+--+
T Consensus 1 mg~thl~malt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 1 MGRTHLTMALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHhCceeEEEcccc
Confidence 6777788888889998888777777777776444
No 10
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=6.39 E-value=1.4e+03 Score=20.77 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=22.7
Q ss_pred CCCcchhhHHhhhhhhhHHHHHHHHHHhh
Q 014881 36 YTEPTYQRYIVRIIFMVPLFAVMSFLSLV 64 (416)
Q Consensus 36 Yt~P~~Qr~IiRIL~MvPIYAi~S~lsL~ 64 (416)
.+.|...|....+..+++..|..+++.+.
T Consensus 35 ~~~~~~~R~~~~~~~lit~iaa~~Yf~Ma 63 (243)
T 2l6x_A 35 DRVSAKWKTSLTVSGLVTGIAFWHYMYMR 63 (243)
T ss_dssp GSSCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcceehhhHHHHHHHHHHHHHHHHH
Confidence 35677777778888899999888877776
Done!