Query 014881
Match_columns 416
No_of_seqs 199 out of 518
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 19:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 17.7 27 0.0019 23.4 1.7 13 69-81 36-48 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 14.7 35 0.0025 23.4 1.7 15 68-82 36-50 (57)
3 d1v54m_ f.23.7.1 (M:) Mitochon 13.2 52 0.0038 21.4 2.2 28 11-38 15-42 (43)
4 d1kf6d_ f.21.2.2 (D:) Fumarate 6.6 5.1E+02 0.037 19.7 7.9 83 137-220 21-109 (119)
5 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.5 1.5E+02 0.011 16.9 2.1 15 82-96 8-22 (26)
6 d2r25b1 c.23.1.1 (B:1087-1214) 5.4 1E+02 0.0074 23.2 1.3 15 388-402 49-63 (128)
7 d1susa1 c.66.1.1 (A:21-247) Ca 5.4 69 0.0051 27.2 0.2 34 371-406 119-152 (227)
8 d1zoqc1 a.153.1.1 (C:2065-2111 5.3 1.6E+02 0.012 18.9 2.0 28 26-53 3-30 (47)
9 d1qo0d_ c.23.1.3 (D:) Positive 4.2 1.6E+02 0.011 22.9 1.7 12 389-400 50-61 (189)
10 d2b4va1 a.160.1.4 (A:289-471) 3.7 6.9E+02 0.05 18.7 5.5 43 142-200 2-46 (183)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=17.70 E-value=27 Score=23.43 Aligned_cols=13 Identities=46% Similarity=0.994 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHH
Q 014881 69 AIYFNSIREVYEA 81 (416)
Q Consensus 69 ~iy~~~iRd~YEA 81 (416)
+-+++.+||+||-
T Consensus 36 SdF~~avREVYe~ 48 (50)
T d1zl8a1 36 SEFFGAVREVYET 48 (50)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5689999999995
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.65 E-value=35 Score=23.42 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHH
Q 014881 68 RAIYFNSIREVYEAW 82 (416)
Q Consensus 68 a~iy~~~iRd~YEAf 82 (416)
.+-+++.+||+||-.
T Consensus 36 qSdF~~avREVYehv 50 (57)
T d1y74a1 36 QSRFCSAIREVYEQL 50 (57)
T ss_dssp HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357899999999963
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.22 E-value=52 Score=21.35 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014881 11 IFIAFLCTIGATSLAIFHIYRHLLNYTE 38 (416)
Q Consensus 11 ~~iag~~~~la~~iS~~~I~~Hl~~Yt~ 38 (416)
..++.....++++.-.--|..||-+|++
T Consensus 15 ~aigLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 4556666667777777778889998865
No 4
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=6.60 E-value=5.1e+02 Score=19.73 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=54.0
Q ss_pred ceeehhhHHHHHHHHHHHHHHcCcccCCCCCCCcch----hhH-HHHHHHHHHHHHHH-HHHHHHHhhhhcCCCCCcchh
Q 014881 137 GCVQFVILKPILVVATLILFANGKYKDGNFSPDQGY----LYI-TIIYTISYTMALYA-LVLFYMACRDLLHPFNPVPKF 210 (416)
Q Consensus 137 gVLQyvivKPl~~iv~iIl~~~G~Y~~g~~s~~~a~----lyl-~iI~niSv~lALY~-L~lFy~~~k~~L~p~~P~~KF 210 (416)
|-.=..++-|++.++.-++...|....+..+..+.. -|+ ..+....+.+-||+ +--++..++ +|+=+.|.+|.
T Consensus 21 GGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglH-Dlkih~p~g~~ 99 (119)
T d1kf6d_ 21 GGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMH-DLKIHVPAGKW 99 (119)
T ss_dssp HHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccchhH
Confidence 334467888999998889999999877766654432 222 34444555666664 445555554 57777899999
Q ss_pred HHHHHHHHHH
Q 014881 211 IMIKSVVFLT 220 (416)
Q Consensus 211 l~IKlVVFls 220 (416)
+|--+-...|
T Consensus 100 ~fYg~A~l~s 109 (119)
T d1kf6d_ 100 VFYGLAAILT 109 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8866544333
No 5
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.49 E-value=1.5e+02 Score=16.86 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcC
Q 014881 82 WVIYNFLSLCLAWVG 96 (416)
Q Consensus 82 fvIY~Ff~Ll~~ylG 96 (416)
+..+.||.|++-|+-
T Consensus 8 w~fw~ffalli~ylq 22 (26)
T d1rzhh2 8 YSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456778899998875
No 6
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.38 E-value=1e+02 Score=23.21 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.3
Q ss_pred CCccccceeecccCC
Q 014881 388 SAPYDMALIDIDMSS 402 (416)
Q Consensus 388 ~~~~~~~~~~~~~~~ 402 (416)
+.+||++|+|+.+..
T Consensus 49 ~~~~dlillD~~mP~ 63 (128)
T d2r25b1 49 GENYNMIFMDVQMPK 63 (128)
T ss_dssp TCCCSEEEECSCCSS
T ss_pred cCCCCEEEEEeCCCC
Confidence 468999999998754
No 7
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=5.36 E-value=69 Score=27.19 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=22.8
Q ss_pred ChhhhhhcccccccCCCCCccccceeecccCCCCCC
Q 014881 371 HSDAIKSSLLVDVSNSLSAPYDMALIDIDMSSYPAK 406 (416)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (416)
+..++.+.++-+.. ..++||+++||.|=++||.-
T Consensus 119 ~a~~~L~~l~~~~~--~~~~fD~iFiDa~k~~y~~~ 152 (227)
T d1susa1 119 PALPVLDEMIKDEK--NHGSYDFIFVDADKDNYLNY 152 (227)
T ss_dssp CHHHHHHHHHHCGG--GTTCBSEEEECSCSTTHHHH
T ss_pred HHHHHHHHHHhccc--cCCceeEEEeccchhhhHHH
Confidence 34455555553322 24689999999999999753
No 8
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.35 E-value=1.6e+02 Score=18.89 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=21.6
Q ss_pred HHHHHHHhccCCCcchhhHHhhhhhhhH
Q 014881 26 IFHIYRHLLNYTEPTYQRYIVRIIFMVP 53 (416)
Q Consensus 26 ~~~I~~Hl~~Yt~P~~Qr~IiRIL~MvP 53 (416)
+-.+.+-|++=+.|+.|.+++-||=-=|
T Consensus 3 lq~Ll~tLrsP~sP~QQqQvL~ILksNP 30 (47)
T d1zoqc1 3 LQDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 3456778888888999999988886544
No 9
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.24 E-value=1.6e+02 Score=22.93 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=10.4
Q ss_pred Cccccceeeccc
Q 014881 389 APYDMALIDIDM 400 (416)
Q Consensus 389 ~~~~~~~~~~~~ 400 (416)
.++|++|+|+++
T Consensus 50 ~~~Dlvl~D~~m 61 (189)
T d1qo0d_ 50 VPVDVVFTSIFQ 61 (189)
T ss_dssp SCCSEEEEECCS
T ss_pred CCCCEEEEcCCC
Confidence 479999999986
No 10
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=3.69 E-value=6.9e+02 Score=18.72 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHcCccc--CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014881 142 VILKPILVVATLILFANGKYK--DGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDL 200 (416)
Q Consensus 142 vivKPl~~iv~iIl~~~G~Y~--~g~~s~~~a~lyl~iI~niSv~lALY~L~lFy~~~k~~ 200 (416)
+.+||+..++=.-....|+.+ .|.++ +.|+--++++|.+.+..
T Consensus 2 P~~R~l~~~vK~Wak~~~i~~~~~G~ls----------------SYal~lmvi~fLQ~~~~ 46 (183)
T d2b4va1 2 VAARHTAMAVKAWGKATNVGAGSGAMLT----------------SYAVTVMFIYYLLVTRQ 46 (183)
T ss_dssp TTHHHHHHHHHHHHHTCC-----CCSSC----------------HHHHHHHHHHHHHHTTS
T ss_pred cceeeHHHHHHHHHHHcCCCCccCCCch----------------HHHHHHHHHHHHHhcCC
Confidence 457888888887777777765 23333 45555677788777654
Done!