BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014882
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2
SV=1
Length = 402
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 263/422 (62%), Positives = 318/422 (75%), Gaps = 26/422 (6%)
Query: 1 MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLN-----GGGDDPLYSDVPKPRRDK 55
MQRR L +IS F FSS+ NL+ +DPLY+DVPKP +DK
Sbjct: 1 MQRRKLVEISI-------FVIRKSNFSSSIKSLTNLDVDVSVDNDEDPLYADVPKPPKDK 53
Query: 56 SERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLL 115
SERKPYPTPMK LIRRAKEE++ RK +P ++LE PP NGLLVPELV VAH V+R R LL
Sbjct: 54 SERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLL 113
Query: 116 YGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPK 175
GLSK+I +PV RCR C+EVHIG GHEIRTCTGP SG RSATHVW++G V D V FPK
Sbjct: 114 SGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPK 173
Query: 176 CFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDF 235
CFHL+DR K RV+HDER +VP+I A++ELCIQAGVD+EK+P+KRR+KPVYS+EGRIVDF
Sbjct: 174 CFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDF 233
Query: 236 ESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMI 295
E V ND + + S ++ +C+ E +L+E+S T+ SWFEM+
Sbjct: 234 EDV--NDGNSELAVTSTTTL----IQEDDRCKE-------EKKSLKELSFETMESWFEMV 280
Query: 296 SGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNY 355
G +++ME+Y VWTCGYCPE+QVGPKGHKVRMCKA+KHQ RDGMHAWQEAT+DD+VGP Y
Sbjct: 281 LGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTY 340
Query: 356 VWHVQD-LNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDL 414
VWHV+D +G L+N+LKR+YGKAPAV+E+CV GGAPVPDQY SMMRLDVV P+RDEVDL
Sbjct: 341 VWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDL 400
Query: 415 VA 416
VA
Sbjct: 401 VA 402
>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2
SV=1
Length = 440
Score = 305 bits (781), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 238/406 (58%), Gaps = 13/406 (3%)
Query: 11 QSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIR 70
Q + + F N + S E +S L D P D+PK + + E+KP+P P+ V +R
Sbjct: 46 QGSSIEFSLQLNSRVVLSKERRSLPLVVRNDRPQNEDLPK-QYTRREKKPFPVPI-VDLR 103
Query: 71 RAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRC 130
RA ER + K PP NG++V LV +A++VY AR+ L+ L +L++ + V C
Sbjct: 104 RAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNAC 163
Query: 131 RFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVH 190
+C+E+H+G GH ++C GP + R H W + D + + +HL DR+GK R+ H
Sbjct: 164 GWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGK-RIRH 222
Query: 191 DERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLD 250
DER S+PR+PA+VELCIQ GV+I ++P KRR KP+ + G+ V+ DE E +
Sbjct: 223 DERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRI-GK----SEFVDADETELPDPE 277
Query: 251 SYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTC 310
E E S++ E +L E TL +W EM +GAK++M Y V C
Sbjct: 278 PQPPPVPLLTELPVS-EITPPSSEEETVSLAE---ETLQAWEEMRAGAKKLMRMYRVRVC 333
Query: 311 GYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENT 370
GYCPEV VGP GHK + C A KHQ R+G H WQ A +DDL+ P YVWHV D+NGP ++
Sbjct: 334 GYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRE 393
Query: 371 LKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDV-VPPERDEVDLV 415
L+ +YG+APAVVE+C GA VP+ YR+ MRL+V +P E ++V
Sbjct: 394 LRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIPSSVKEAEMV 439
>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2
SV=1
Length = 436
Score = 301 bits (771), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 155/370 (41%), Positives = 231/370 (62%), Gaps = 8/370 (2%)
Query: 47 DVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQ 106
D+P P K+++KPYP P K + A+++++ + K L+ PP NGLLVP LV VA Q
Sbjct: 75 DLP-PILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLD-PPKNGLLVPNLVPVADQ 132
Query: 107 VYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGG 166
V L+ GL++L+ +PV C C VH+ +VGH IR C GP + R +H W KG
Sbjct: 133 VIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGT 192
Query: 167 VGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVY 226
+ D + + +H++D G+ R+ H+ R RIPA+VELCIQAGV+I +YP +RRT+P+
Sbjct: 193 INDVLIPVESYHMYDPFGR-RIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIR 251
Query: 227 SVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIR 286
+ R++D + E EK S L + + E++ ER ++ +++
Sbjct: 252 MMGKRVIDRGGY--HKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTP---EDIPKIAQE 306
Query: 287 TLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEAT 346
T+ ++ ++ G ++M K+TV CGYC EV VGP GH V++C KHQ RDG H WQ+A
Sbjct: 307 TMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDAL 366
Query: 347 MDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVP 406
+D++ PNYVWHV+DL G L L+R+YGKAPA+VE+C+H GA VP +Y++MMRLD++
Sbjct: 367 VDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIV 426
Query: 407 PERDEVDLVA 416
P+ E D+VA
Sbjct: 427 PDSQEADMVA 436
>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2
SV=2
Length = 337
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 151/305 (49%), Gaps = 39/305 (12%)
Query: 97 VPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFR 156
V E+V VA ++ AR +L+ ++ L++ PV C+FCSEV +G GH I TC
Sbjct: 55 VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114
Query: 157 SATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKY 216
+ H W G + D + + +HLH+ + + + H ER R+PAI+ELC QAG +
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHN-ISQGVIRHQERFDYDRVPAILELCCQAGAI---H 170
Query: 217 PTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVE 276
P + I+ + + +N ++ + + S +
Sbjct: 171 PEE------------ILQYSEIHDNPQISEEDIRS-----------------------LP 195
Query: 277 GANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSR 336
+L+ V L +W ++ +G K+++ Y C C EV VGP GHK R+C K++S
Sbjct: 196 AGDLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESW 255
Query: 337 DGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQY 396
G H W++A ++DLV VWH + + L + + YYG APA+V LC H GA VP +Y
Sbjct: 256 RGTHYWEKAGVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKY 315
Query: 397 RSMMR 401
M+
Sbjct: 316 ACKMK 320
>sp|A1CK40|EIF3K_ASPCL Eukaryotic translation initiation factor 3 subunit K OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ACLA_037210 PE=3 SV=1
Length = 249
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 277 GANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEV-QVGPKGHKVRMCKASKHQS 335
G RE++ L WF++ S +E +EK+ CG+ EV + GP G V++ +++
Sbjct: 168 GKAFREINAEVLEQWFDLRS--REALEKFVTEVCGW--EVDKAGPNGTVVKVPSNKENEV 223
Query: 336 R 336
R
Sbjct: 224 R 224
>sp|P39708|DHE5_YEAST NADP-specific glutamate dehydrogenase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GDH3 PE=1 SV=1
Length = 457
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 213 IEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSY 252
EK+P ++ P+ SV RI+ F END E+ V Y
Sbjct: 24 FEKFPQYKKVLPIVSVPERIIQFRVTWENDNGEQEVAQGY 63
>sp|Q8TFF6|DHE4_SACBA NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces bayanus
GN=GDH1 PE=3 SV=1
Length = 454
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 213 IEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSY 252
E++P R+ P+ SV RI+ F END+ E+ V Y
Sbjct: 23 FEQHPKYRKVLPIVSVPERIIQFRVTWENDKGEQEVAQGY 62
>sp|P07262|DHE4_YEAST NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GDH1 PE=1 SV=2
Length = 454
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 213 IEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSY 252
E++P R+ P+ SV RI+ F END+ E+ V Y
Sbjct: 23 FEQHPEYRKVLPIVSVPERIIQFRVTWENDKGEQEVAQGY 62
>sp|Q75BB5|ERO1_ASHGO Endoplasmic oxidoreductin-1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERO1 PE=3 SV=2
Length = 546
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 19 FTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERES 78
F NFF ET+ + +D+P P S+ +PY +K+ RR+K++ +
Sbjct: 430 FQNNFFRLGFTETEDQETSNAT-----ADMPLPEDSASDNEPYFADLKIPARRSKKQTKE 484
Query: 79 RKAEPVK 85
++
Sbjct: 485 ESTSALQ 491
>sp|Q28628|AKAP9_RABIT A-kinase anchor protein 9 (Fragment) OS=Oryctolagus cuniculus
GN=AKAP9 PE=2 SV=2
Length = 1087
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 193 RHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSY 252
R+S + ELC++ + E+ R+ K + ++E ++ F +EN E L +
Sbjct: 190 RNSFGAVEPKAELCLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQL--H 247
Query: 253 LGAKIDEMERSSKCERMDQSNDV 275
+ +I + E +++ + ++Q N +
Sbjct: 248 MQLEIQKKESTTRLQELEQENKL 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,313,214
Number of Sequences: 539616
Number of extensions: 7382450
Number of successful extensions: 16343
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 16290
Number of HSP's gapped (non-prelim): 43
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)