Query 014882
Match_columns 416
No_of_seqs 98 out of 110
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00111 accumulation of photo 100.0 4E-155 1E-159 1151.6 28.2 365 40-416 35-399 (399)
2 PF05634 APO_RNA-bind: APO RNA 100.0 5.5E-90 1.2E-94 639.3 17.7 193 39-234 12-204 (204)
3 PF05634 APO_RNA-bind: APO RNA 100.0 1.5E-61 3.2E-66 449.6 9.5 179 210-406 18-196 (204)
4 PLN00111 accumulation of photo 100.0 1.2E-54 2.6E-59 433.1 9.5 174 210-403 40-215 (399)
5 PRK11582 flagella biosynthesis 47.0 8.4 0.00018 36.5 0.8 23 109-139 59-81 (169)
6 TIGR03823 FliZ flagellar regul 45.6 9.2 0.0002 36.2 0.8 23 109-139 59-81 (168)
7 PRK11582 flagella biosynthesis 32.5 21 0.00046 33.9 1.0 25 289-321 59-83 (169)
8 PF13696 zf-CCHC_2: Zinc knuck 31.6 19 0.00041 25.8 0.4 20 126-150 7-26 (32)
9 TIGR03823 FliZ flagellar regul 31.3 23 0.0005 33.6 1.0 25 289-321 59-83 (168)
10 PF13887 MRF_C1: Myelin gene r 24.3 20 0.00043 26.4 -0.5 23 367-389 2-24 (36)
11 COG1592 Rubrerythrin [Energy p 23.1 87 0.0019 29.6 3.3 41 293-333 120-160 (166)
12 PF05766 NinG: Bacteriophage L 23.1 1.6E+02 0.0035 28.4 5.1 38 98-144 67-106 (189)
No 1
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=4.5e-155 Score=1151.59 Aligned_cols=365 Identities=58% Similarity=1.011 Sum_probs=357.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHhHH
Q 014882 40 GDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLS 119 (416)
Q Consensus 40 ~~~~~~~d~P~~~~~k~ekKP~~~p~~~l~r~Are~~k~~~~~~~~~l~~pP~NGLLV~~LipVA~~V~~Ar~~L~~Gls 119 (416)
+++|||+|+||+++ |+|||||+|||++|+++||++++++|++|+++|+ ||+|||||++||||||+||+||++|++||+
T Consensus 35 ~~~~~~~d~pr~~~-k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~~~l~-pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~ 112 (399)
T PLN00111 35 SEYPQNADLPRPYS-KREKKPYPRPMKLLRREAREKKKLRKLQPERPLD-PPKNGLLVKRLVPVAHEVYKARKLLISGVS 112 (399)
T ss_pred ccCCcccccCCCCC-chhcCCCCccHHHHHHHHHHHhhhhhcCCCccCC-CCccCccccccHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 9999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred hhhceeeeeccCCCCceeecCCCccccccCCCCCCCCCccccceecccCccccCCeeeeeccCCCCceecccccccCCCc
Q 014882 120 KLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRI 199 (416)
Q Consensus 120 kLl~vvPV~aC~~C~EVHVG~~GH~irtC~g~~~~~R~g~H~W~~g~v~Dvlvpve~~Hl~D~~g~~~I~H~eRf~~~Ri 199 (416)
|||++|||++|+||+|||||++||+||||+|+++++|||+|+|++|+|||||+|+|+|||+|++|++ |.|++||+||||
T Consensus 113 kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~-i~h~~Rf~y~ri 191 (399)
T PLN00111 113 KLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKR-IKHDERFDVPRI 191 (399)
T ss_pred HhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCcc-cccccccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hHHHHHHHHhCCCCCCCCCcccCCccccccceeecccccccchhhhhhccccccccchhhhhhhccccccccCCcccccc
Q 014882 200 PAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGAN 279 (416)
Q Consensus 200 PAVvELCiQAGvdipeyptkRr~~Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 279 (416)
|||||||||||||||||||+||++|||+|+|+++||+++.++++++++...++++++.+.++.. ++.+++|
T Consensus 192 PAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---------~~~~~~~ 262 (399)
T PLN00111 192 PAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIE---------APSSEEE 262 (399)
T ss_pred cHHHHHHHHcCCCCCccccccccccccccccccccccccccccccccccccccccccccccccc---------ccCchhH
Confidence 9999999999999999999999999999999999999999999999999999999888887644 2347889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhheeecccCCCCCeeecCCCcccccccCcccccccCcccceecccCcccCCCceeee
Q 014882 280 LREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHV 359 (416)
Q Consensus 280 Li~vA~evl~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~q~R~g~H~W~~a~vdDvv~P~~vwHl 359 (416)
|++||++||+||+.|++||+|||++|||++|||||||||||+||++|+|+|||||+|||+|+||+|+|||||||+||||+
T Consensus 263 l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~C~~~k~q~r~g~H~Wq~a~vdDlvpP~~vwH~ 342 (399)
T PLN00111 263 LKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRLCGAFKHQQRDGQHGWQEATVDDLVPPNYVWHV 342 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeeecCCchhcccCCcccccccccccccCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccchhhhcCCCchhhhhhhhcCCCCCCcCccccccccCCCCCccccccC
Q 014882 360 QDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA 416 (416)
Q Consensus 360 ~d~~g~~l~he~R~~ygr~PAVVELCiQAGa~vP~~Y~s~mr~d~~~p~~~E~~~Va 416 (416)
+|++|++|.|++||||||||||||||+||||++|++|+||||+|+++|++||++|||
T Consensus 343 ~d~~~~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRldv~~P~~~E~~lva 399 (399)
T PLN00111 343 RDQDGPPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLVA 399 (399)
T ss_pred CCCCCCcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhccccCCCcchhhccC
Confidence 999999999999999999999999999999999999999999999999999999997
No 2
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=5.5e-90 Score=639.34 Aligned_cols=193 Identities=53% Similarity=0.927 Sum_probs=190.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHhH
Q 014882 39 GGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGL 118 (416)
Q Consensus 39 ~~~~~~~~d~P~~~~~k~ekKP~~~p~~~l~r~Are~~k~~~~~~~~~l~~pP~NGLLV~~LipVA~~V~~Ar~~L~~Gl 118 (416)
.+++|||+|||++++ |+||||||||||+|+++||||+|++|++|+++|+ ||+|||||++|||||++||+||++|++||
T Consensus 12 ~~~~~~~~d~P~~~~-k~ekKp~p~p~k~l~~~are~~k~~~~~p~r~l~-pP~NGllV~~LvpvA~ev~~A~~~L~~Gv 89 (204)
T PF05634_consen 12 RNESPQNADLPRPLP-KSEKKPYPTPIKELIRRAREERKARQGQPERPLY-PPKNGLLVKELVPVAYEVLEAWETLISGV 89 (204)
T ss_pred cccCCccccCCCcCC-ccccCCCCccHHHHHHHHHHHHHHhhcCCCCCCC-CCccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999 9999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HhhhceeeeeccCCCCceeecCCCccccccCCCCCCCCCccccceecccCccccCCeeeeeccCCCCceecccccccCCC
Q 014882 119 SKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPR 198 (416)
Q Consensus 119 skLl~vvPV~aC~~C~EVHVG~~GH~irtC~g~~~~~R~g~H~W~~g~v~Dvlvpve~~Hl~D~~g~~~I~H~eRf~~~R 198 (416)
+|||++|||++|+||+|||||++||+||||+|+++++|+|+|+|++|+|||||+|+|+|||+|++|++ |.|++||+|||
T Consensus 90 ~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~-i~he~R~~y~r 168 (204)
T PF05634_consen 90 KKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPR-IKHEERFYYGR 168 (204)
T ss_pred HHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCc-cccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred chHHHHHHHHhCCCCCCCCCcccCCccccccceeec
Q 014882 199 IPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVD 234 (416)
Q Consensus 199 iPAVvELCiQAGvdipeyptkRr~~Pi~~i~~r~~d 234 (416)
|||||||||||||++|||||+||++|||+|+|+++|
T Consensus 169 iPAVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd 204 (204)
T PF05634_consen 169 IPAVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD 204 (204)
T ss_pred cchHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence 999999999999999999999999999999999886
No 3
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=100.00 E-value=1.5e-61 Score=449.59 Aligned_cols=179 Identities=38% Similarity=0.670 Sum_probs=151.8
Q ss_pred CCCCCCCCCcccCCccccccceeecccccccchhhhhhccccccccchhhhhhhccccccccCCcccccchhHHHHHHHH
Q 014882 210 GVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLA 289 (416)
Q Consensus 210 GvdipeyptkRr~~Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLi~vA~evl~ 289 (416)
-+|+|.-..|+.+||-.++-+.+.-.+.+.- +. +...+.-.+...+ +.+..++|++||++||+
T Consensus 18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are~~--k~-~~~~p~r~l~pP~--------------NGllV~~LvpvA~ev~~ 80 (204)
T PF05634_consen 18 NADLPRPLPKSEKKPYPTPIKELIRRAREER--KA-RQGQPERPLYPPK--------------NGLLVKELVPVAYEVLE 80 (204)
T ss_pred cccCCCcCCccccCCCCccHHHHHHHHHHHH--HH-hhcCCCCCCCCCc--------------cCccHHHHHHHHHHHHH
Confidence 3689888889999998888777664444211 11 1111111111111 22457899999999999
Q ss_pred HHHHHHHHHHHHhhheeecccCCCCCeeecCCCcccccccCcccccccCcccceecccCcccCCCceeeecCCCCCcccc
Q 014882 290 SWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALEN 369 (416)
Q Consensus 290 Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~q~R~g~H~W~~a~vdDvv~P~~vwHl~d~~g~~l~h 369 (416)
||+.|++||+|||++|||++|+||||||||++||++|||+||||++|||+|+||+|+|||||+|+|||||+|++|++|.|
T Consensus 81 A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~h 160 (204)
T PF05634_consen 81 AWETLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKH 160 (204)
T ss_pred HHHHHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCchhhhhhhhcCCCCCCcCccccccccCC
Q 014882 370 TLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVP 406 (416)
Q Consensus 370 e~R~~ygr~PAVVELCiQAGa~vP~~Y~s~mr~d~~~ 406 (416)
|+|||||||||||||||||||++|+ |++|||.+-++
T Consensus 161 e~R~~y~riPAVVELCiQAGa~vPe-ypt~rR~kPv~ 196 (204)
T PF05634_consen 161 EERFYYGRIPAVVELCIQAGADVPE-YPTKRRTKPVY 196 (204)
T ss_pred ccccccCccchHHHHHHhhCCcCCc-ccccccccceE
Confidence 9999999999999999999999996 99999988654
No 4
>PLN00111 accumulation of photosystem one; Provisional
Probab=100.00 E-value=1.2e-54 Score=433.09 Aligned_cols=174 Identities=25% Similarity=0.425 Sum_probs=146.4
Q ss_pred CCCCCCCCCcccCCc--cccccceeecccccccchhhhhhccccccccchhhhhhhccccccccCCcccccchhHHHHHH
Q 014882 210 GVDIEKYPTKRRTKP--VYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRT 287 (416)
Q Consensus 210 GvdipeyptkRr~~P--i~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLi~vA~ev 287 (416)
-+|+|.+.+|+-.|| +-++..++-.++.... ....... .+ +... +.+...+|++||++|
T Consensus 40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~----~~~~~~~-~l-~pP~-------------NGllV~~LvpvA~ev 100 (399)
T PLN00111 40 NADLPRPYSKREKKPYPRPMKLLRREAREKKKL----RKLQPER-PL-DPPK-------------NGLLVKRLVPVAHEV 100 (399)
T ss_pred ccccCCCCCchhcCCCCccHHHHHHHHHHHhhh----hhcCCCc-cC-CCCc-------------cCccccccHHHHHHH
Confidence 468888888777766 5566655443333111 1111111 22 2222 224578999999999
Q ss_pred HHHHHHHHHHHHHHhhheeecccCCCCCeeecCCCcccccccCcccccccCcccceecccCcccCCCceeeecCCCCCcc
Q 014882 288 LASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPAL 367 (416)
Q Consensus 288 l~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~q~R~g~H~W~~a~vdDvv~P~~vwHl~d~~g~~l 367 (416)
|+||+.|++||+|||++|||++|+||+|||||++||+||||+|+|||+|||+|+|++|+|||||+|+|+|||+|++|++|
T Consensus 101 ~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~i 180 (399)
T PLN00111 101 YKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRI 180 (399)
T ss_pred HHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCchhhhhhhhcCCCCCCcCccccccc
Q 014882 368 ENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLD 403 (416)
Q Consensus 368 ~he~R~~ygr~PAVVELCiQAGa~vP~~Y~s~mr~d 403 (416)
.|++||+||||||||||||||||++|+ |++..|..
T Consensus 181 ~h~~Rf~y~riPAVvELCiQAGa~vPe-yp~~Rr~~ 215 (399)
T PLN00111 181 KHDERFDVPRIPAIVELCIQAGVDIPE-YPTKRRTK 215 (399)
T ss_pred ccccccccCcccHHHHHHHHcCCCCCc-cccccccc
Confidence 999999999999999999999999998 99988875
No 5
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=47.02 E-value=8.4 Score=36.48 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.3
Q ss_pred HHHHHHHHhHHhhhceeeeeccCCCCceeec
Q 014882 109 RARLSLLYGLSKLIQFIPVQRCRFCSEVHIG 139 (416)
Q Consensus 109 ~Ar~~L~~GlskLl~vvPV~aC~~C~EVHVG 139 (416)
++|..|-..+..| |+||||+|--
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~ 81 (169)
T PRK11582 59 NGWQKLQQEWVAL--------CRFCSDLHCN 81 (169)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcC
Confidence 4699999888877 9999999843
No 6
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=45.57 E-value=9.2 Score=36.20 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHhhhceeeeeccCCCCceeec
Q 014882 109 RARLSLLYGLSKLIQFIPVQRCRFCSEVHIG 139 (416)
Q Consensus 109 ~Ar~~L~~GlskLl~vvPV~aC~~C~EVHVG 139 (416)
++|..|-..+..| |+||||+|--
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~ 81 (168)
T TIGR03823 59 NGWSVLQQELAAL--------CRFCSEIYCN 81 (168)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcC
Confidence 4699999888877 9999999843
No 7
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=32.48 E-value=21 Score=33.86 Aligned_cols=25 Identities=12% Similarity=0.613 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhheeecccCCCCCeeecCC
Q 014882 289 ASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPK 321 (416)
Q Consensus 289 ~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~ 321 (416)
++|..+..++.-| |+||+|+|--+.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~ 83 (169)
T PRK11582 59 NGWQKLQQEWVAL--------CRFCSDLHCNTQ 83 (169)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCC
Confidence 5899999988776 999999986544
No 8
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=31.57 E-value=19 Score=25.77 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=15.9
Q ss_pred eeeccCCCCceeecCCCccccccCC
Q 014882 126 PVQRCRFCSEVHIGHVGHEIRTCTG 150 (416)
Q Consensus 126 PV~aC~~C~EVHVG~~GH~irtC~g 150 (416)
+-+.|..|. ..||.|++|--
T Consensus 7 ~~Y~C~~C~-----~~GH~i~dCP~ 26 (32)
T PF13696_consen 7 PGYVCHRCG-----QKGHWIQDCPT 26 (32)
T ss_pred CCCEeecCC-----CCCccHhHCCC
Confidence 456788885 68999999964
No 9
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=31.33 E-value=23 Score=33.61 Aligned_cols=25 Identities=16% Similarity=0.590 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhheeecccCCCCCeeecCC
Q 014882 289 ASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPK 321 (416)
Q Consensus 289 ~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~ 321 (416)
++|..+..++.-| |+||+|+|--+.
T Consensus 59 ~~W~~lQ~~l~aL--------CRFCs~i~c~~~ 83 (168)
T TIGR03823 59 NGWSVLQQELAAL--------CRFCSEIYCNTT 83 (168)
T ss_pred HHHHHHHHHHHHH--------HHHhhhhhcCCC
Confidence 5799999988776 999999986543
No 10
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=24.29 E-value=20 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.5
Q ss_pred cccchhhhcCCCchhhhhhhhcC
Q 014882 367 LENTLKRYYGKAPAVVELCVHGG 389 (416)
Q Consensus 367 l~he~R~~ygr~PAVVELCiQAG 389 (416)
++++.|-||.-+-||-|||...|
T Consensus 2 ~Vdk~rifmEnV~AvqeLck~t~ 24 (36)
T PF13887_consen 2 TVDKERIFMENVGAVQELCKLTD 24 (36)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999998876
No 11
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=23.09 E-value=87 Score=29.65 Aligned_cols=41 Identities=32% Similarity=0.583 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhheeecccCCCCCeeecCCCcccccccCccc
Q 014882 293 EMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKH 333 (416)
Q Consensus 293 ~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~ 333 (416)
.+..|+...++.-.|++|.-|.=+|.|...=+=..|+++|.
T Consensus 120 ~~~~~~Le~~~~~~~~vC~vCGy~~~ge~P~~CPiCga~k~ 160 (166)
T COG1592 120 EMFRGLLERLEEGKVWVCPVCGYTHEGEAPEVCPICGAPKE 160 (166)
T ss_pred HHHHHHHHhhhcCCEEEcCCCCCcccCCCCCcCCCCCChHH
Confidence 34555555555557999999999999988888899998764
No 12
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=23.07 E-value=1.6e+02 Score=28.41 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHHHhHHhhhceeeeeccCCCCceeec--CCCcc
Q 014882 98 PELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIG--HVGHE 144 (416)
Q Consensus 98 ~~LipVA~~V~~Ar~~L~~GlskLl~vvPV~aC~~C~EVHVG--~~GH~ 144 (416)
.+++--|..+++++..|+.. -+.|-.|+..|-| +.||.
T Consensus 67 ~~~~~~aq~afn~~IR~RD~---------~~~CiSCG~~~~~~~dagHy 106 (189)
T PF05766_consen 67 SDWLKEAQKAFNKYIRLRDA---------GKPCISCGRKHGGQWDAGHY 106 (189)
T ss_pred hHHHHHHHHHHHHHHHHHhc---------CCCcccCCCcCCCCcccccc
Confidence 36777899999999998854 3568888886654 34443
Done!