Query 014882
Match_columns 416
No_of_seqs 98 out of 110
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 19:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc8_A Nucleocapsid protein; H 28.5 28 0.00095 22.5 1.8 19 129-152 8-26 (29)
2 1dsq_A Nucleic acid binding pr 20.5 35 0.0012 21.5 1.1 20 129-153 4-23 (26)
3 1a6b_B Momulv, zinc finger pro 19.0 72 0.0025 22.5 2.5 24 128-156 11-34 (40)
4 3pwf_A Rubrerythrin; non heme 17.3 1.9E+02 0.0064 25.6 5.4 28 126-153 137-164 (170)
5 2ysa_A Retinoblastoma-binding 16.4 45 0.0015 25.0 1.0 18 127-149 7-24 (55)
6 1u6p_A GAG polyprotein; MLV, A 16.2 77 0.0026 23.9 2.2 24 308-336 24-47 (56)
7 1yuz_A Nigerythrin; rubrythrin 15.4 74 0.0025 28.9 2.3 32 303-334 167-198 (202)
8 1yuz_A Nigerythrin; rubrythrin 15.0 86 0.0029 28.4 2.6 30 124-153 168-197 (202)
9 2oqm_A Hypothetical protein; s 12.8 1.3E+02 0.0045 27.7 3.3 55 65-124 36-90 (192)
10 3pwf_A Rubrerythrin; non heme 12.0 3.6E+02 0.012 23.8 5.7 29 306-334 137-165 (170)
No 1
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=28.52 E-value=28 Score=22.46 Aligned_cols=19 Identities=47% Similarity=1.176 Sum_probs=15.0
Q ss_pred ccCCCCceeecCCCccccccCCCC
Q 014882 129 RCRFCSEVHIGHVGHEIRTCTGPK 152 (416)
Q Consensus 129 aC~~C~EVHVG~~GH~irtC~g~~ 152 (416)
.|-.| |..||..++|..++
T Consensus 8 ~C~nC-----gk~GH~ar~C~~pr 26 (29)
T 1nc8_A 8 RCWNC-----GKEGHSARQCRAPR 26 (29)
T ss_dssp BCTTT-----SCBSSCGGGCCSSS
T ss_pred EEEEC-----CccccCHhHCcccc
Confidence 47777 56799999998764
No 2
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=20.47 E-value=35 Score=21.52 Aligned_cols=20 Identities=35% Similarity=0.748 Sum_probs=14.3
Q ss_pred ccCCCCceeecCCCccccccCCCCC
Q 014882 129 RCRFCSEVHIGHVGHEIRTCTGPKS 153 (416)
Q Consensus 129 aC~~C~EVHVG~~GH~irtC~g~~~ 153 (416)
.|-.| |..||..+.|...+.
T Consensus 4 ~Cf~C-----G~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 4 VCFSC-----GKTGHIKRDCKEEXX 23 (26)
T ss_dssp BCTTT-----CCBSSCTTTTTCC--
T ss_pred eeEeC-----CCCCcccccCCCccc
Confidence 46666 467999999987654
No 3
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=19.02 E-value=72 Score=22.51 Aligned_cols=24 Identities=29% Similarity=0.771 Sum_probs=18.6
Q ss_pred eccCCCCceeecCCCccccccCCCCCCCC
Q 014882 128 QRCRFCSEVHIGHVGHEIRTCTGPKSGFR 156 (416)
Q Consensus 128 ~aC~~C~EVHVG~~GH~irtC~g~~~~~R 156 (416)
-.|.+|. ..||.+++|--.....|
T Consensus 11 ~~C~~Cg-----k~GH~ardCP~~~~~~r 34 (40)
T 1a6b_B 11 DQCAYCK-----EKGHWAKDCPKKPRGPR 34 (40)
T ss_dssp SSCSSSC-----CTTCCTTSCSSSCCCTT
T ss_pred CeeeECC-----CCCcchhhCcCCcccCC
Confidence 4688885 57999999987776554
No 4
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=17.32 E-value=1.9e+02 Score=25.61 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=22.4
Q ss_pred eeeccCCCCceeecCCCccccccCCCCC
Q 014882 126 PVQRCRFCSEVHIGHVGHEIRTCTGPKS 153 (416)
Q Consensus 126 PV~aC~~C~EVHVG~~GH~irtC~g~~~ 153 (416)
..+.|..|+-||.|..+-.=..|+.+++
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 5899999999999877666667776655
No 5
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.43 E-value=45 Score=25.04 Aligned_cols=18 Identities=39% Similarity=0.842 Sum_probs=14.3
Q ss_pred eeccCCCCceeecCCCccccccC
Q 014882 127 VQRCRFCSEVHIGHVGHEIRTCT 149 (416)
Q Consensus 127 V~aC~~C~EVHVG~~GH~irtC~ 149 (416)
-+.|--| |..||.|++|-
T Consensus 7 ~~~C~kC-----Gk~GH~~k~Cp 24 (55)
T 2ysa_A 7 GYTCFRC-----GKPGHYIKNCP 24 (55)
T ss_dssp SCCCTTT-----CCTTSCGGGCS
T ss_pred CCccccC-----CCcCcccccCC
Confidence 3567777 56899999995
No 6
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=16.17 E-value=77 Score=23.85 Aligned_cols=24 Identities=38% Similarity=0.776 Sum_probs=18.5
Q ss_pred cccCCCCCeeecCCCcccccccCcccccc
Q 014882 308 WTCGYCPEVQVGPKGHKVRMCKASKHQSR 336 (416)
Q Consensus 308 ~~C~yC~EVHVG~~GHkir~C~g~k~q~R 336 (416)
-.|-+|.| .||.++.|--.+...+
T Consensus 24 ~~C~~Cge-----~GH~ardCp~~~~~~~ 47 (56)
T 1u6p_A 24 DQCAYCKE-----KGHWAKDCPKKPRGPR 47 (56)
T ss_dssp TBCSSSCC-----BSSCGGGCTTCCCSSC
T ss_pred CcceeCCC-----CCcccccCcCCccccC
Confidence 46999966 7999999987765433
No 7
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=15.40 E-value=74 Score=28.87 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=22.6
Q ss_pred hheeecccCCCCCeeecCCCcccccccCcccc
Q 014882 303 EKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQ 334 (416)
Q Consensus 303 ~vypV~~C~yC~EVHVG~~GHkir~C~g~k~q 334 (416)
.....+.|..|.-||.|-..-+=..|++.|..
T Consensus 167 ~~~~~~~C~~CG~i~~g~~p~~CP~C~~~k~~ 198 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHKGEDFEKCPICFRPKDT 198 (202)
T ss_dssp CSCCEEECSSSCCEEESSCCSBCTTTCCBGGG
T ss_pred CCCcEEEECCCCCEEcCcCCCCCCCCCCChHH
Confidence 34568999999999998433344567776653
No 8
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=15.00 E-value=86 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=22.1
Q ss_pred eeeeeccCCCCceeecCCCccccccCCCCC
Q 014882 124 FIPVQRCRFCSEVHIGHVGHEIRTCTGPKS 153 (416)
Q Consensus 124 vvPV~aC~~C~EVHVG~~GH~irtC~g~~~ 153 (416)
-..++.|..|+-||.|..+-.=..|+.+++
T Consensus 168 ~~~~~~C~~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 168 DDKFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp SCCEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred CCcEEEECCCCCEEcCcCCCCCCCCCCChH
Confidence 457899999999999855544455666554
No 9
>2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Probab=12.79 E-value=1.3e+02 Score=27.68 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHhHHhhhce
Q 014882 65 MKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQF 124 (416)
Q Consensus 65 ~~~l~r~Are~~k~~~~~~~~~l~~pP~NGLLV~~LipVA~~V~~Ar~~L~~GlskLl~v 124 (416)
+..|...|.+.-++++..|+-.|. -=|.++|-|++.||..|...-..++.+|--+
T Consensus 36 L~~iL~Kaeaha~~~~~~~~~ll~-----aRL~pDM~PL~~QVq~a~d~ak~~~aRL~G~ 90 (192)
T 2oqm_A 36 LNAIFDKAEAFAELKKVDMDVLLN-----SRLAADQFNLIRQVQIACDTAKVGVARLTGQ 90 (192)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHT-----CCSSTTSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHh-----cccccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667777777776655655444 4588999999999999999999999999654
No 10
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=12.00 E-value=3.6e+02 Score=23.76 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=22.5
Q ss_pred eecccCCCCCeeecCCCcccccccCcccc
Q 014882 306 TVWTCGYCPEVQVGPKGHKVRMCKASKHQ 334 (416)
Q Consensus 306 pV~~C~yC~EVHVG~~GHkir~C~g~k~q 334 (416)
..+.|.-|.-||.|...-+=..|++++..
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~~~~~ 165 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGAPKEK 165 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGGG
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCCCHHH
Confidence 47889999999998655566778876643
Done!