Query 014882
Match_columns 416
No_of_seqs 98 out of 110
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 19:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014882.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014882hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 57.4 1.9 0.00014 27.6 1.3 20 309-333 8-27 (29)
2 d2bs2a3 d.168.1.1 (A:251-371) 33.8 7.8 0.00057 31.0 1.8 20 198-217 91-111 (121)
3 d1yuza2 g.41.5.1 (A:167-202) N 27.6 19 0.0014 23.6 2.6 29 126-154 4-32 (36)
4 d1a6bb_ g.40.1.1 (B:) Zinc fin 24.3 14 0.001 24.9 1.4 19 308-331 11-29 (40)
5 d1nnqa2 g.41.5.1 (A:135-171) R 24.1 25 0.0018 23.0 2.7 29 126-154 4-32 (37)
6 d1szha_ a.226.1.1 (A:) Her-1 { 20.5 8.7 0.00063 32.0 -0.4 40 363-404 30-69 (147)
7 d1kf6c_ f.21.2.2 (C:) Fumarate 18.6 11 0.00082 31.1 -0.1 11 56-66 2-12 (130)
8 d1chua3 d.168.1.1 (A:238-353) 18.3 21 0.0015 28.0 1.5 20 198-217 87-106 (116)
9 d1neka3 d.168.1.1 (A:236-355) 16.4 28 0.002 27.6 1.8 21 197-217 90-111 (120)
10 d2ezia_ a.4.1.2 (A:) Transposa 16.3 13 0.00096 27.0 -0.2 21 202-222 35-55 (75)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=57.38 E-value=1.9 Score=27.61 Aligned_cols=20 Identities=40% Similarity=1.022 Sum_probs=15.9
Q ss_pred ccCCCCCeeecCCCcccccccCccc
Q 014882 309 TCGYCPEVQVGPKGHKVRMCKASKH 333 (416)
Q Consensus 309 ~C~yC~EVHVG~~GHkir~C~g~k~ 333 (416)
.|=.| |..||.+|+|.++..
T Consensus 8 kCfNC-----GkeGH~ar~CrAPRk 27 (29)
T d1nc8a_ 8 RCWNC-----GKEGHSARQCRAPRR 27 (29)
T ss_dssp BCTTT-----SCBSSCGGGCCSSSS
T ss_pred EeecC-----CccchhhhhccCccc
Confidence 45556 678999999999864
No 2
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=33.79 E-value=7.8 Score=31.04 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.3
Q ss_pred CchHHHHHHHH-hCCCCCCCC
Q 014882 198 RIPAIVELCIQ-AGVDIEKYP 217 (416)
Q Consensus 198 RiPAVvELCiQ-AGvdipeyp 217 (416)
|.|.|.|+|.+ +|+|+.+-|
T Consensus 91 rfp~i~~~~~~~~GiD~~k~p 111 (121)
T d2bs2a3 91 NLRDVQEICEYFAGIDPAEKW 111 (121)
T ss_dssp HSHHHHHHHHHTSCCCTTTSC
T ss_pred hhHHHHHHHHHhcCCCCCCCc
Confidence 57999999999 799987765
No 3
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=27.56 E-value=19 Score=23.58 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=23.2
Q ss_pred eeeccCCCCceeecCCCccccccCCCCCC
Q 014882 126 PVQRCRFCSEVHIGHVGHEIRTCTGPKSG 154 (416)
Q Consensus 126 PV~aC~~C~EVHVG~~GH~irtC~g~~~~ 154 (416)
.++.|.-|+-+|.|...=+=..|+.+++.
T Consensus 4 ~~~vC~vCGyi~~g~~Pe~CPvCg~~~~~ 32 (36)
T d1yuza2 4 KFHLCPICGYIHKGEDFEKCPICFRPKDT 32 (36)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBGGG
T ss_pred CEEECCCCCCEeeCCCCCcCCCCCCcHHH
Confidence 46899999999999887777777766653
No 4
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=24.33 E-value=14 Score=24.95 Aligned_cols=19 Identities=42% Similarity=0.908 Sum_probs=15.7
Q ss_pred cccCCCCCeeecCCCcccccccCc
Q 014882 308 WTCGYCPEVQVGPKGHKVRMCKAS 331 (416)
Q Consensus 308 ~~C~yC~EVHVG~~GHkir~C~g~ 331 (416)
--|-||-| .||-++.|--.
T Consensus 11 DQCAyCke-----~GHW~~dCPkk 29 (40)
T d1a6bb_ 11 DQCAYCKE-----KGHWAKDCPKK 29 (40)
T ss_dssp SSCSSSCC-----TTCCTTSCSSS
T ss_pred hhhHHHhh-----cCchhhhCccC
Confidence 35999998 79999999743
No 5
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.07 E-value=25 Score=23.03 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=23.0
Q ss_pred eeeccCCCCceeecCCCccccccCCCCCC
Q 014882 126 PVQRCRFCSEVHIGHVGHEIRTCTGPKSG 154 (416)
Q Consensus 126 PV~aC~~C~EVHVG~~GH~irtC~g~~~~ 154 (416)
.++.|.-|+-+|.|...-.=.-|+..++.
T Consensus 4 ~~~~C~vCG~i~~g~~P~~CPvCg~~~~~ 32 (37)
T d1nnqa2 4 KVYICPICGYTAVDEAPEYCPVCGAPKEK 32 (37)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCCBGGG
T ss_pred cEEECCCCCCEecCCCCCcCCCCCCcHHH
Confidence 57899999999999877766667766543
No 6
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=20.51 E-value=8.7 Score=31.99 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=29.3
Q ss_pred CCCccccchhhhcCCCchhhhhhhhcCCCCCCcCcccccccc
Q 014882 363 NGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDV 404 (416)
Q Consensus 363 ~g~~l~he~R~~ygr~PAVVELCiQAGa~vP~~Y~s~mr~d~ 404 (416)
||.||+- +-.-=.+|||.|-+|+|--.--- +|..||.||-
T Consensus 30 FgtPirC-Gy~rd~kip~~Vy~C~Q~eLfa~-Ep~k~~NLdD 69 (147)
T d1szha_ 30 FGTPIRC-GYDRDPKLPGYVYKCLQNVLFAK-EPKKKINLDD 69 (147)
T ss_dssp HTCCCCT-TCCSCTTHHHHHHHHHHHHHTSS-CGGGCCCGGG
T ss_pred cCCCeec-ccccCCCccHHHHHHHHHHHhcc-CcccccCCCc
Confidence 6777766 33334689999999999765443 4999999873
No 7
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=18.60 E-value=11 Score=31.11 Aligned_cols=11 Identities=55% Similarity=1.090 Sum_probs=8.2
Q ss_pred CCCCCCCCcHH
Q 014882 56 SERKPYPTPMK 66 (416)
Q Consensus 56 ~ekKP~~~p~~ 66 (416)
+|||||+.||+
T Consensus 2 skRkpYvR~m~ 12 (130)
T d1kf6c_ 2 TKRKPYVRPMT 12 (130)
T ss_dssp CCCCCBCCCCC
T ss_pred CCCCCccCCCC
Confidence 57888887775
No 8
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=18.29 E-value=21 Score=28.01 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=16.8
Q ss_pred CchHHHHHHHHhCCCCCCCC
Q 014882 198 RIPAIVELCIQAGVDIEKYP 217 (416)
Q Consensus 198 RiPAVvELCiQAGvdipeyp 217 (416)
|.|.|.+.|.+.|+|+-+-|
T Consensus 87 rfP~i~~~~~~~GiD~~~~~ 106 (116)
T d1chua3 87 HFPMIYEKLLGLGIDLTQEP 106 (116)
T ss_dssp HCHHHHHHHHTTTCCTTTSC
T ss_pred hHHHHHHHHHHcCCCCCCCc
Confidence 45999999999999986644
No 9
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=16.43 E-value=28 Score=27.56 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=17.3
Q ss_pred CCchHHHHHHHH-hCCCCCCCC
Q 014882 197 PRIPAIVELCIQ-AGVDIEKYP 217 (416)
Q Consensus 197 ~RiPAVvELCiQ-AGvdipeyp 217 (416)
.|.|+|.++|.+ +|+|+-+.|
T Consensus 90 ~rfP~i~~~~~~~~giD~~~ep 111 (120)
T d1neka3 90 SRLPGILELSRTFAHVDPVKEP 111 (120)
T ss_dssp HHCHHHHHHHHHHHCCCTTTSC
T ss_pred HHCHHHHHHHHHhcCCCCCCCc
Confidence 367999999999 699986554
No 10
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=16.26 E-value=13 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCCCCCCcccC
Q 014882 202 IVELCIQAGVDIEKYPTKRRT 222 (416)
Q Consensus 202 VvELCiQAGvdipeyptkRr~ 222 (416)
|...|.++|..+|-|.|-+|+
T Consensus 35 i~~~c~~~gl~~PS~~T~~rr 55 (75)
T d2ezia_ 35 LELAAREHGWSIPSRATAFRR 55 (75)
T ss_dssp HHHHHHHHTCCCCCHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHH
Confidence 567899999999999998887
Done!