Query 014883
Match_columns 416
No_of_seqs 305 out of 1956
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 1.8E-58 4E-63 447.8 32.5 347 19-416 1-349 (438)
2 PTZ00363 rab-GDP dissociation 100.0 2.2E-55 4.7E-60 432.3 37.6 348 19-416 1-350 (443)
3 KOG1439 RAB proteins geranylge 100.0 4.3E-50 9.4E-55 370.4 22.5 346 19-416 1-349 (440)
4 KOG4405 GDP dissociation inhib 100.0 1.9E-49 4.1E-54 365.0 18.2 365 19-416 5-408 (547)
5 COG5044 MRS6 RAB proteins gera 100.0 1.4E-47 3E-52 349.8 23.0 341 20-416 4-348 (434)
6 TIGR02734 crtI_fam phytoene de 100.0 8.5E-29 1.8E-33 251.8 26.3 334 25-416 1-368 (502)
7 COG1233 Phytoene dehydrogenase 100.0 1.9E-28 4.2E-33 246.6 21.7 260 20-336 1-279 (487)
8 TIGR02733 desat_CrtD C-3',4' d 100.0 7.8E-27 1.7E-31 236.7 27.8 331 23-416 2-367 (492)
9 TIGR00562 proto_IX_ox protopor 100.0 7.2E-26 1.6E-30 228.2 28.6 287 22-376 2-314 (462)
10 TIGR02730 carot_isom carotene 100.0 3.6E-26 7.8E-31 231.7 26.1 335 23-416 1-367 (493)
11 PRK12416 protoporphyrinogen ox 99.9 1.3E-25 2.8E-30 226.2 24.2 284 23-376 2-313 (463)
12 PLN02576 protoporphyrinogen ox 99.9 7.8E-25 1.7E-29 222.5 29.8 291 20-376 10-332 (496)
13 PRK07233 hypothetical protein; 99.9 4E-25 8.6E-30 220.9 24.7 288 24-377 1-290 (434)
14 PRK07208 hypothetical protein; 99.9 2.5E-24 5.4E-29 217.9 29.9 292 19-376 1-316 (479)
15 PRK11883 protoporphyrinogen ox 99.9 1.3E-24 2.9E-29 218.3 26.2 295 24-388 2-320 (451)
16 TIGR02731 phytoene_desat phyto 99.9 5.3E-24 1.1E-28 214.0 29.2 295 24-378 1-315 (453)
17 PLN02612 phytoene desaturase 99.9 6.8E-24 1.5E-28 217.2 30.3 295 22-378 93-405 (567)
18 PLN02268 probable polyamine ox 99.9 1.5E-23 3.2E-28 209.7 22.9 279 24-379 2-294 (435)
19 PLN02676 polyamine oxidase 99.9 3.8E-23 8.2E-28 208.0 23.0 285 20-378 24-327 (487)
20 TIGR02732 zeta_caro_desat caro 99.9 1.6E-22 3.5E-27 203.2 26.5 301 24-377 1-322 (474)
21 PLN02487 zeta-carotene desatur 99.9 2.7E-22 5.8E-27 203.4 27.8 304 21-377 74-398 (569)
22 COG1231 Monoamine oxidase [Ami 99.9 8.1E-24 1.8E-28 201.4 15.3 288 20-377 5-300 (450)
23 PLN02529 lysine-specific histo 99.9 1.1E-22 2.4E-27 210.1 24.2 280 21-377 159-447 (738)
24 COG1232 HemY Protoporphyrinoge 99.9 2.3E-22 5.1E-27 195.9 25.0 283 24-375 2-300 (444)
25 PLN02568 polyamine oxidase 99.9 3.3E-21 7.1E-26 195.4 24.1 298 19-376 2-339 (539)
26 PLN02328 lysine-specific histo 99.9 5.3E-21 1.1E-25 198.6 24.3 283 21-378 237-528 (808)
27 TIGR03467 HpnE squalene-associ 99.9 6.6E-21 1.4E-25 189.5 24.2 277 36-377 1-288 (419)
28 PLN03000 amine oxidase 99.9 1.9E-20 4E-25 194.4 23.6 281 21-378 183-472 (881)
29 KOG0029 Amine oxidase [Seconda 99.8 2.5E-19 5.4E-24 178.8 17.2 112 271-389 211-323 (501)
30 PLN02976 amine oxidase 99.8 1E-18 2.2E-23 186.3 21.8 105 269-378 926-1038(1713)
31 KOG4254 Phytoene desaturase [C 99.8 7.1E-20 1.5E-24 172.4 10.6 72 269-342 254-327 (561)
32 PRK13977 myosin-cross-reactive 99.8 5.5E-17 1.2E-21 162.0 24.2 244 18-332 18-287 (576)
33 COG2907 Predicted NAD/FAD-bind 99.7 1.1E-15 2.3E-20 140.1 21.3 289 22-377 8-308 (447)
34 PF01593 Amino_oxidase: Flavin 99.7 4.7E-17 1E-21 161.9 11.0 98 278-380 208-306 (450)
35 KOG0685 Flavin-containing amin 99.7 8.2E-16 1.8E-20 146.9 18.2 114 272-387 216-337 (498)
36 KOG1276 Protoporphyrinogen oxi 99.7 1.1E-14 2.3E-19 137.2 21.6 294 22-375 11-343 (491)
37 COG3349 Uncharacterized conser 99.6 2.9E-14 6.3E-19 139.0 14.4 251 24-331 2-268 (485)
38 TIGR00031 UDP-GALP_mutase UDP- 99.4 1.8E-12 4E-17 125.5 13.8 43 23-65 2-44 (377)
39 PF13450 NAD_binding_8: NAD(P) 99.4 3.5E-13 7.6E-18 97.7 6.4 41 27-67 1-41 (68)
40 COG2081 Predicted flavoprotein 99.4 4.8E-12 1E-16 119.5 13.1 59 271-332 102-161 (408)
41 PF01266 DAO: FAD dependent ox 99.3 3.2E-11 6.9E-16 117.0 16.0 60 271-333 136-198 (358)
42 PF03486 HI0933_like: HI0933-l 99.3 3.7E-11 8.1E-16 117.9 11.7 60 271-332 100-160 (409)
43 COG0562 Glf UDP-galactopyranos 99.2 2E-10 4.3E-15 105.0 10.9 100 22-163 1-101 (374)
44 COG0579 Predicted dehydrogenas 99.2 7.9E-10 1.7E-14 107.8 15.9 61 271-333 142-206 (429)
45 PRK11728 hydroxyglutarate oxid 99.2 7.8E-10 1.7E-14 109.2 16.1 59 271-333 138-199 (393)
46 TIGR03329 Phn_aa_oxid putative 99.1 4.2E-09 9.2E-14 106.1 19.9 57 271-332 172-231 (460)
47 TIGR01377 soxA_mon sarcosine o 99.1 2.5E-09 5.5E-14 105.0 14.5 58 271-332 134-194 (380)
48 PRK08274 tricarballylate dehyd 99.0 6.5E-09 1.4E-13 105.1 16.2 58 274-333 126-187 (466)
49 TIGR01373 soxB sarcosine oxida 99.0 1.2E-08 2.6E-13 101.3 16.6 61 271-333 172-235 (407)
50 PRK11259 solA N-methyltryptoph 99.0 4.1E-09 8.8E-14 103.4 12.8 58 271-332 138-198 (376)
51 PRK12845 3-ketosteroid-delta-1 99.0 3.1E-08 6.6E-13 101.8 18.9 49 13-62 7-55 (564)
52 PF01946 Thi4: Thi4 family; PD 99.0 4.4E-10 9.5E-15 98.2 4.2 43 21-63 16-58 (230)
53 PRK11101 glpA sn-glycerol-3-ph 99.0 1.7E-08 3.7E-13 103.6 16.6 60 270-332 138-205 (546)
54 KOG2820 FAD-dependent oxidored 98.9 2.7E-08 5.9E-13 91.7 15.2 53 281-333 155-207 (399)
55 COG1635 THI4 Ribulose 1,5-bisp 98.9 7E-10 1.5E-14 96.3 4.5 42 22-63 30-71 (262)
56 PTZ00383 malate:quinone oxidor 98.9 1.7E-08 3.6E-13 101.7 14.2 60 271-333 199-268 (497)
57 PRK01747 mnmC bifunctional tRN 98.9 3E-08 6.4E-13 104.4 16.7 58 271-332 397-457 (662)
58 PRK00711 D-amino acid dehydrog 98.9 5.2E-08 1.1E-12 97.0 16.7 59 271-332 190-251 (416)
59 COG3380 Predicted NAD/FAD-depe 98.9 4.3E-09 9.3E-14 94.2 6.8 45 24-68 3-47 (331)
60 PF06100 Strep_67kDa_ant: Stre 98.8 3.8E-07 8.3E-12 89.3 18.2 43 23-65 3-49 (500)
61 COG0644 FixC Dehydrogenases (f 98.8 5.5E-09 1.2E-13 103.2 5.5 43 21-63 2-44 (396)
62 COG0578 GlpA Glycerol-3-phosph 98.8 1.1E-07 2.3E-12 94.9 13.5 47 18-64 8-54 (532)
63 TIGR00292 thiazole biosynthesi 98.7 1E-08 2.3E-13 94.5 5.2 42 21-62 20-61 (254)
64 PRK04176 ribulose-1,5-biphosph 98.7 1.4E-08 3E-13 93.9 5.3 41 21-61 24-64 (257)
65 PRK10157 putative oxidoreducta 98.7 2.6E-08 5.6E-13 99.4 5.7 40 21-60 4-43 (428)
66 PRK05249 soluble pyridine nucl 98.7 2.6E-08 5.7E-13 100.5 5.7 46 19-64 2-47 (461)
67 PRK10015 oxidoreductase; Provi 98.6 3.6E-08 7.9E-13 98.3 5.5 40 21-60 4-43 (429)
68 PRK06115 dihydrolipoamide dehy 98.6 3.4E-08 7.3E-13 99.7 5.0 45 20-64 1-45 (466)
69 PRK07121 hypothetical protein; 98.6 5.6E-08 1.2E-12 98.9 6.4 42 21-62 19-60 (492)
70 PLN02172 flavin-containing mon 98.6 5.3E-08 1.2E-12 97.6 5.8 44 20-63 8-51 (461)
71 PRK07364 2-octaprenyl-6-methox 98.6 6.1E-08 1.3E-12 96.4 5.9 45 13-57 9-53 (415)
72 KOG2844 Dimethylglycine dehydr 98.6 1.2E-06 2.5E-11 87.7 14.3 58 271-331 176-236 (856)
73 PRK08010 pyridine nucleotide-d 98.6 6.3E-08 1.4E-12 97.2 5.1 44 20-63 1-45 (441)
74 COG2072 TrkA Predicted flavopr 98.6 7.1E-08 1.5E-12 96.3 5.4 49 20-68 6-55 (443)
75 PF01494 FAD_binding_3: FAD bi 98.5 6.8E-08 1.5E-12 93.5 4.8 36 22-57 1-36 (356)
76 PRK07251 pyridine nucleotide-d 98.5 7.4E-08 1.6E-12 96.6 5.1 43 21-63 2-45 (438)
77 PLN00093 geranylgeranyl diphos 98.5 9.3E-08 2E-12 95.7 5.8 43 14-56 31-73 (450)
78 PRK06467 dihydrolipoamide dehy 98.5 9.4E-08 2E-12 96.6 5.4 44 20-63 2-45 (471)
79 PRK06370 mercuric reductase; V 98.5 1E-07 2.2E-12 96.2 5.6 45 19-64 2-46 (463)
80 PTZ00058 glutathione reductase 98.5 1.3E-07 2.8E-12 96.9 6.3 54 10-64 35-89 (561)
81 PRK06116 glutathione reductase 98.5 8.4E-08 1.8E-12 96.5 4.9 43 20-63 2-44 (450)
82 PF12831 FAD_oxidored: FAD dep 98.5 9.6E-08 2.1E-12 95.3 4.9 41 24-64 1-41 (428)
83 PRK12266 glpD glycerol-3-phosp 98.5 1.2E-07 2.7E-12 96.5 5.8 43 19-61 3-45 (508)
84 PRK06292 dihydrolipoamide dehy 98.5 1.1E-07 2.4E-12 96.0 5.2 43 20-63 1-43 (460)
85 PRK07494 2-octaprenyl-6-methox 98.5 1.2E-07 2.7E-12 93.4 5.4 40 18-57 3-42 (388)
86 PLN02463 lycopene beta cyclase 98.5 1.5E-07 3.3E-12 93.8 5.9 48 9-56 15-62 (447)
87 TIGR02032 GG-red-SF geranylger 98.5 1.3E-07 2.9E-12 89.1 5.2 37 23-59 1-37 (295)
88 TIGR01350 lipoamide_DH dihydro 98.5 1.3E-07 2.7E-12 95.6 5.2 42 22-64 1-42 (461)
89 TIGR02485 CobZ_N-term precorri 98.5 2.2E-06 4.8E-11 85.7 13.8 61 272-332 116-177 (432)
90 PRK07818 dihydrolipoamide dehy 98.5 1.6E-07 3.5E-12 94.9 5.6 44 20-64 2-45 (466)
91 PRK06481 fumarate reductase fl 98.5 2.5E-07 5.4E-12 94.3 6.9 43 20-62 59-101 (506)
92 PRK08013 oxidoreductase; Provi 98.5 1.5E-07 3.2E-12 93.3 5.1 38 20-57 1-38 (400)
93 PRK09126 hypothetical protein; 98.5 1.5E-07 3.3E-12 92.8 5.1 37 22-58 3-39 (392)
94 TIGR01424 gluta_reduc_2 glutat 98.5 1.4E-07 3E-12 94.7 4.8 41 22-63 2-42 (446)
95 PRK12409 D-amino acid dehydrog 98.5 1.9E-07 4E-12 92.9 5.4 40 23-62 2-41 (410)
96 PRK05976 dihydrolipoamide dehy 98.4 1.9E-07 4.2E-12 94.5 5.4 44 20-64 2-45 (472)
97 PRK13369 glycerol-3-phosphate 98.4 2.2E-07 4.8E-12 94.6 5.7 44 19-62 3-46 (502)
98 TIGR01421 gluta_reduc_1 glutat 98.4 1.9E-07 4.1E-12 93.8 4.9 41 22-63 2-42 (450)
99 PRK07045 putative monooxygenas 98.4 2.1E-07 4.6E-12 91.8 5.2 38 20-57 3-40 (388)
100 PRK08849 2-octaprenyl-3-methyl 98.4 2E-07 4.4E-12 91.8 5.0 36 20-55 1-36 (384)
101 PRK08850 2-octaprenyl-6-methox 98.4 2E-07 4.3E-12 92.5 4.9 36 19-54 1-36 (405)
102 PRK06416 dihydrolipoamide dehy 98.4 2.1E-07 4.5E-12 94.0 5.0 43 21-64 3-45 (462)
103 PRK08773 2-octaprenyl-3-methyl 98.4 2.4E-07 5.1E-12 91.5 5.3 52 280-334 114-166 (392)
104 PLN02661 Putative thiazole syn 98.4 2.3E-07 4.9E-12 88.3 4.8 41 22-62 92-133 (357)
105 PF00890 FAD_binding_2: FAD bi 98.4 2E-07 4.3E-12 92.9 4.4 55 277-333 139-198 (417)
106 PRK12831 putative oxidoreducta 98.4 3.5E-07 7.5E-12 92.1 6.2 46 17-62 135-180 (464)
107 PRK05192 tRNA uridine 5-carbox 98.4 2.6E-07 5.5E-12 94.1 5.1 41 20-60 2-43 (618)
108 TIGR03315 Se_ygfK putative sel 98.4 3.4E-07 7.4E-12 98.5 6.2 44 20-63 535-578 (1012)
109 PF13738 Pyr_redox_3: Pyridine 98.4 1.9E-07 4.1E-12 83.2 3.7 39 26-64 1-40 (203)
110 PRK07236 hypothetical protein; 98.4 3E-07 6.6E-12 90.6 5.3 37 20-56 4-40 (386)
111 PRK12834 putative FAD-binding 98.4 3.2E-07 7E-12 94.5 5.5 42 21-62 3-46 (549)
112 PRK06327 dihydrolipoamide dehy 98.4 3.5E-07 7.5E-12 92.6 5.6 45 20-64 2-52 (475)
113 PRK06184 hypothetical protein; 98.4 3.3E-07 7.1E-12 93.5 5.5 46 20-65 1-48 (502)
114 TIGR02023 BchP-ChlP geranylger 98.4 2.8E-07 6.1E-12 90.9 4.9 32 23-54 1-32 (388)
115 TIGR03143 AhpF_homolog putativ 98.4 3.1E-07 6.7E-12 94.7 5.2 43 20-63 2-44 (555)
116 PRK08163 salicylate hydroxylas 98.4 3.3E-07 7.2E-12 90.6 5.1 38 21-58 3-40 (396)
117 TIGR01292 TRX_reduct thioredox 98.4 3.3E-07 7.2E-12 86.7 4.9 40 23-63 1-40 (300)
118 TIGR02028 ChlP geranylgeranyl 98.4 3.8E-07 8.3E-12 90.2 5.2 39 23-61 1-39 (398)
119 TIGR01813 flavo_cyto_c flavocy 98.4 3.9E-07 8.4E-12 91.4 5.2 38 24-61 1-39 (439)
120 PRK14694 putative mercuric red 98.4 4.2E-07 9.2E-12 91.9 5.3 43 20-63 4-46 (468)
121 PRK13748 putative mercuric red 98.4 3.8E-07 8.2E-12 94.5 5.0 43 21-64 97-139 (561)
122 COG1148 HdrA Heterodisulfide r 98.4 3.6E-07 7.8E-12 88.2 4.4 44 22-65 124-167 (622)
123 KOG1399 Flavin-containing mono 98.4 4E-07 8.6E-12 90.1 4.9 45 20-64 4-48 (448)
124 PRK12839 hypothetical protein; 98.4 5.2E-07 1.1E-11 93.1 5.9 48 16-63 2-49 (572)
125 PRK08020 ubiF 2-octaprenyl-3-m 98.4 4.1E-07 8.9E-12 89.8 4.9 37 20-56 3-39 (391)
126 PRK12837 3-ketosteroid-delta-1 98.3 4.4E-07 9.5E-12 92.7 5.2 40 21-61 6-45 (513)
127 TIGR01988 Ubi-OHases Ubiquinon 98.3 4.2E-07 9.2E-12 89.3 4.8 35 24-58 1-35 (385)
128 PRK07608 ubiquinone biosynthes 98.3 4.8E-07 1E-11 89.2 5.1 37 22-58 5-41 (388)
129 COG0665 DadA Glycine/D-amino a 98.3 5.3E-07 1.1E-11 88.7 5.4 59 271-333 145-207 (387)
130 PF00732 GMC_oxred_N: GMC oxid 98.3 3.9E-07 8.4E-12 86.4 4.3 39 23-61 1-40 (296)
131 PRK12842 putative succinate de 98.3 5.5E-07 1.2E-11 93.2 5.7 44 19-62 6-49 (574)
132 COG0492 TrxB Thioredoxin reduc 98.3 5.3E-07 1.1E-11 85.1 4.9 46 20-65 1-46 (305)
133 PLN02697 lycopene epsilon cycl 98.3 7.8E-07 1.7E-11 90.3 6.4 49 11-60 98-146 (529)
134 PRK09853 putative selenate red 98.3 7.7E-07 1.7E-11 95.5 6.4 44 20-63 537-580 (1019)
135 TIGR01790 carotene-cycl lycope 98.3 5.6E-07 1.2E-11 88.7 5.0 37 24-60 1-37 (388)
136 PRK05714 2-octaprenyl-3-methyl 98.3 5E-07 1.1E-11 89.6 4.6 52 280-334 113-165 (405)
137 PRK06185 hypothetical protein; 98.3 5.8E-07 1.3E-11 89.2 5.1 37 20-56 4-40 (407)
138 PRK05732 2-octaprenyl-6-methox 98.3 5.6E-07 1.2E-11 88.9 4.7 36 20-55 1-39 (395)
139 TIGR02053 MerA mercuric reduct 98.3 6.1E-07 1.3E-11 90.7 5.0 40 23-63 1-40 (463)
140 PRK06834 hypothetical protein; 98.3 6.8E-07 1.5E-11 90.6 5.4 46 20-65 1-49 (488)
141 PRK12769 putative oxidoreducta 98.3 8.9E-07 1.9E-11 93.1 6.4 43 20-62 325-367 (654)
142 TIGR03364 HpnW_proposed FAD de 98.3 7.3E-07 1.6E-11 87.1 5.4 34 23-56 1-34 (365)
143 PLN02985 squalene monooxygenas 98.3 8.5E-07 1.8E-11 90.3 6.0 40 18-57 39-78 (514)
144 PRK14727 putative mercuric red 98.3 6.3E-07 1.4E-11 90.8 5.0 44 21-64 15-58 (479)
145 TIGR01316 gltA glutamate synth 98.3 9.4E-07 2E-11 88.8 6.0 45 18-62 129-173 (449)
146 PRK06847 hypothetical protein; 98.3 7.5E-07 1.6E-11 87.3 5.3 37 21-57 3-39 (375)
147 COG1249 Lpd Pyruvate/2-oxoglut 98.3 7.3E-07 1.6E-11 88.5 5.1 45 20-64 2-46 (454)
148 PRK12779 putative bifunctional 98.3 7.4E-07 1.6E-11 96.5 5.5 43 20-62 304-346 (944)
149 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 6.5E-07 1.4E-11 88.3 4.6 35 22-56 2-36 (390)
150 COG3573 Predicted oxidoreducta 98.3 9.1E-07 2E-11 81.7 4.9 43 20-62 3-47 (552)
151 PRK07190 hypothetical protein; 98.3 8.6E-07 1.9E-11 89.8 5.3 46 20-65 3-50 (487)
152 PTZ00052 thioredoxin reductase 98.3 8.6E-07 1.9E-11 90.2 5.2 50 280-332 223-272 (499)
153 PRK07803 sdhA succinate dehydr 98.3 9.8E-07 2.1E-11 92.1 5.7 41 19-59 5-45 (626)
154 TIGR01984 UbiH 2-polyprenyl-6- 98.3 7.6E-07 1.7E-11 87.5 4.6 53 279-334 105-159 (382)
155 PRK12844 3-ketosteroid-delta-1 98.3 8.9E-07 1.9E-11 91.2 5.2 41 21-61 5-45 (557)
156 PRK12809 putative oxidoreducta 98.3 1.2E-06 2.7E-11 91.7 6.3 50 13-62 301-350 (639)
157 PRK07057 sdhA succinate dehydr 98.3 1.1E-06 2.3E-11 91.2 5.7 46 16-61 6-51 (591)
158 PRK12835 3-ketosteroid-delta-1 98.3 9.1E-07 2E-11 91.5 5.0 41 21-61 10-50 (584)
159 COG0654 UbiH 2-polyprenyl-6-me 98.3 8.6E-07 1.9E-11 87.4 4.6 54 278-334 103-159 (387)
160 PRK06617 2-octaprenyl-6-methox 98.3 8.6E-07 1.9E-11 87.0 4.6 34 22-55 1-34 (374)
161 PRK06753 hypothetical protein; 98.2 9.4E-07 2E-11 86.6 4.7 36 23-58 1-36 (373)
162 PRK08641 sdhA succinate dehydr 98.2 1.1E-06 2.4E-11 91.1 5.3 40 21-60 2-41 (589)
163 PRK08243 4-hydroxybenzoate 3-m 98.2 1.1E-06 2.4E-11 86.8 4.7 35 22-56 2-36 (392)
164 PTZ00367 squalene epoxidase; P 98.2 1.2E-06 2.7E-11 89.7 5.2 36 20-55 31-66 (567)
165 PLN02507 glutathione reductase 98.2 1.3E-06 2.8E-11 88.9 5.3 44 20-63 23-75 (499)
166 PRK11445 putative oxidoreducta 98.2 1.1E-06 2.4E-11 85.4 4.6 35 22-57 1-35 (351)
167 PRK12775 putative trifunctiona 98.2 1.5E-06 3.2E-11 95.0 6.0 43 21-63 429-471 (1006)
168 PRK08958 sdhA succinate dehydr 98.2 1.4E-06 3.1E-11 90.2 5.6 42 19-60 4-45 (588)
169 TIGR01789 lycopene_cycl lycope 98.2 1.3E-06 2.9E-11 85.3 5.1 40 24-63 1-43 (370)
170 PLN02464 glycerol-3-phosphate 98.2 1.4E-06 3E-11 90.9 5.5 40 20-59 69-108 (627)
171 PRK08132 FAD-dependent oxidore 98.2 1.8E-06 3.9E-11 89.1 6.3 45 21-65 22-68 (547)
172 PRK07843 3-ketosteroid-delta-1 98.2 1.5E-06 3.2E-11 89.7 5.6 42 21-62 6-47 (557)
173 PRK06126 hypothetical protein; 98.2 1.3E-06 2.9E-11 90.0 5.3 46 20-65 5-52 (545)
174 PRK08244 hypothetical protein; 98.2 1.2E-06 2.6E-11 89.2 4.9 44 22-65 2-47 (493)
175 TIGR01989 COQ6 Ubiquinone bios 98.2 1.2E-06 2.6E-11 87.8 4.6 34 23-56 1-38 (437)
176 PRK07333 2-octaprenyl-6-methox 98.2 1.2E-06 2.6E-11 86.8 4.6 35 22-56 1-37 (403)
177 PRK07804 L-aspartate oxidase; 98.2 1.8E-06 3.9E-11 88.7 5.9 41 20-60 14-54 (541)
178 PRK09078 sdhA succinate dehydr 98.2 1.5E-06 3.3E-11 90.2 5.4 43 18-60 8-50 (598)
179 PRK07538 hypothetical protein; 98.2 1.4E-06 3E-11 86.7 4.8 35 23-57 1-35 (413)
180 PRK12810 gltD glutamate syntha 98.2 2.1E-06 4.5E-11 86.8 6.1 43 20-62 141-183 (471)
181 TIGR01318 gltD_gamma_fam gluta 98.2 2.3E-06 4.9E-11 86.4 6.2 47 16-62 135-181 (467)
182 PRK06452 sdhA succinate dehydr 98.2 1.7E-06 3.7E-11 89.3 5.4 41 21-61 4-44 (566)
183 KOG1298 Squalene monooxygenase 98.2 1.6E-06 3.5E-11 81.5 4.5 35 20-54 43-77 (509)
184 PRK06134 putative FAD-binding 98.2 2.3E-06 4.9E-11 88.7 6.2 45 19-63 9-53 (581)
185 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1.8E-06 3.9E-11 88.9 5.3 40 20-59 8-47 (538)
186 TIGR01372 soxA sarcosine oxida 98.2 1.9E-06 4.1E-11 94.5 5.8 43 21-63 162-204 (985)
187 PRK06175 L-aspartate oxidase; 98.2 1.7E-06 3.6E-11 86.5 4.9 39 21-60 3-41 (433)
188 PTZ00139 Succinate dehydrogena 98.2 2E-06 4.3E-11 89.6 5.4 41 21-61 28-68 (617)
189 PRK07573 sdhA succinate dehydr 98.2 1.9E-06 4.2E-11 90.0 5.2 40 21-60 34-73 (640)
190 PLN02546 glutathione reductase 98.2 2E-06 4.3E-11 88.2 5.2 44 21-64 78-130 (558)
191 PRK07588 hypothetical protein; 98.2 1.8E-06 3.9E-11 85.2 4.7 35 23-57 1-35 (391)
192 TIGR01320 mal_quin_oxido malat 98.2 1.8E-06 3.8E-11 87.3 4.6 62 270-333 166-235 (483)
193 KOG2614 Kynurenine 3-monooxyge 98.2 2.4E-06 5.2E-11 81.5 5.0 43 23-65 3-45 (420)
194 TIGR01423 trypano_reduc trypan 98.1 2.3E-06 5E-11 86.6 5.3 52 279-332 231-282 (486)
195 PRK05257 malate:quinone oxidor 98.1 2.2E-06 4.8E-11 86.7 5.0 44 20-63 3-48 (494)
196 PRK07395 L-aspartate oxidase; 98.1 2.2E-06 4.8E-11 88.1 5.1 43 18-61 5-47 (553)
197 PRK10262 thioredoxin reductase 98.1 2.4E-06 5.1E-11 82.0 5.0 42 21-63 5-46 (321)
198 PF00743 FMO-like: Flavin-bind 98.1 2.1E-06 4.6E-11 87.4 4.9 41 23-63 2-42 (531)
199 PRK12778 putative bifunctional 98.1 3.1E-06 6.7E-11 90.5 6.3 43 20-62 429-471 (752)
200 PLN00128 Succinate dehydrogena 98.1 2.3E-06 5E-11 89.2 5.2 40 21-60 49-88 (635)
201 PRK02106 choline dehydrogenase 98.1 2.4E-06 5.2E-11 88.3 5.2 38 19-56 2-40 (560)
202 PLN02852 ferredoxin-NADP+ redu 98.1 3E-06 6.6E-11 85.1 5.7 42 22-63 26-69 (491)
203 PRK05868 hypothetical protein; 98.1 2.6E-06 5.7E-11 83.4 5.0 35 23-57 2-36 (372)
204 PRK05335 tRNA (uracil-5-)-meth 98.1 2.8E-06 6.1E-11 83.0 5.0 37 23-59 3-39 (436)
205 PRK15317 alkyl hydroperoxide r 98.1 2.7E-06 5.8E-11 87.1 5.1 41 20-62 209-249 (517)
206 PRK05945 sdhA succinate dehydr 98.1 2.4E-06 5.2E-11 88.5 4.6 40 21-60 2-43 (575)
207 PRK08626 fumarate reductase fl 98.1 3.1E-06 6.7E-11 88.7 5.1 40 21-60 4-43 (657)
208 PF05834 Lycopene_cycl: Lycope 98.1 3.2E-06 7E-11 82.8 5.0 34 24-57 1-36 (374)
209 COG0493 GltD NADPH-dependent g 98.1 4.2E-06 9E-11 83.3 5.7 53 12-64 113-165 (457)
210 PRK08294 phenol 2-monooxygenas 98.1 3.2E-06 6.9E-11 88.3 5.0 47 19-65 29-78 (634)
211 PRK06069 sdhA succinate dehydr 98.1 3.5E-06 7.6E-11 87.4 5.2 42 20-61 3-47 (577)
212 PTZ00306 NADH-dependent fumara 98.1 4.1E-06 8.9E-11 93.3 6.0 43 20-62 407-449 (1167)
213 PRK12814 putative NADPH-depend 98.1 4.4E-06 9.5E-11 87.7 5.9 42 21-62 192-233 (652)
214 TIGR01812 sdhA_frdA_Gneg succi 98.1 3.5E-06 7.6E-11 87.3 5.1 38 24-61 1-38 (566)
215 TIGR02462 pyranose_ox pyranose 98.1 3.8E-06 8.2E-11 85.3 5.1 39 23-61 1-39 (544)
216 PRK11749 dihydropyrimidine deh 98.1 5.5E-06 1.2E-10 83.5 6.2 43 20-62 138-180 (457)
217 PRK06475 salicylate hydroxylas 98.1 3.7E-06 7.9E-11 83.3 4.8 35 23-57 3-37 (400)
218 TIGR03140 AhpF alkyl hydropero 98.1 4.1E-06 8.9E-11 85.6 5.3 41 20-62 210-250 (515)
219 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 3.7E-06 8E-11 82.6 4.7 38 24-61 2-39 (433)
220 PTZ00153 lipoamide dehydrogena 98.1 4.1E-06 8.9E-11 87.2 5.2 43 22-64 116-159 (659)
221 PRK12843 putative FAD-binding 98.1 6.2E-06 1.3E-10 85.5 6.4 43 21-63 15-57 (578)
222 PLN02815 L-aspartate oxidase 98.0 5.7E-06 1.2E-10 85.5 5.9 40 20-60 27-66 (594)
223 TIGR01317 GOGAT_sm_gam glutama 98.0 7.1E-06 1.5E-10 83.2 6.4 42 21-62 142-183 (485)
224 TIGR00551 nadB L-aspartate oxi 98.0 4.9E-06 1.1E-10 84.6 5.0 39 22-61 2-40 (488)
225 PLN02927 antheraxanthin epoxid 98.0 4.6E-06 1E-10 86.4 4.8 36 20-55 79-114 (668)
226 TIGR03219 salicylate_mono sali 98.0 5.2E-06 1.1E-10 82.6 5.1 36 24-59 2-38 (414)
227 KOG2415 Electron transfer flav 98.0 5.2E-06 1.1E-10 78.9 4.4 45 21-65 75-125 (621)
228 PRK08071 L-aspartate oxidase; 98.0 5.4E-06 1.2E-10 84.5 5.0 39 22-61 3-41 (510)
229 PRK13339 malate:quinone oxidor 98.0 5.8E-06 1.3E-10 83.3 5.1 43 21-63 5-49 (497)
230 PRK06854 adenylylsulfate reduc 98.0 5.7E-06 1.2E-10 86.1 5.1 39 21-59 10-50 (608)
231 KOG0399 Glutamate synthase [Am 98.0 5.9E-06 1.3E-10 86.7 5.0 54 9-63 1773-1826(2142)
232 PRK06567 putative bifunctional 98.0 8.4E-06 1.8E-10 86.7 6.3 43 19-61 380-422 (1028)
233 PRK06996 hypothetical protein; 98.0 6E-06 1.3E-10 81.7 4.9 39 18-56 7-49 (398)
234 PRK08401 L-aspartate oxidase; 98.0 6.7E-06 1.5E-10 83.0 5.0 50 279-332 120-169 (466)
235 TIGR01438 TGR thioredoxin and 98.0 7.2E-06 1.6E-10 83.1 5.0 42 22-63 2-51 (484)
236 TIGR00275 flavoprotein, HI0933 98.0 4.3E-06 9.4E-11 82.7 3.2 57 272-332 97-154 (400)
237 PRK12770 putative glutamate sy 98.0 1E-05 2.3E-10 78.6 5.8 40 23-62 19-58 (352)
238 PRK09231 fumarate reductase fl 98.0 7.5E-06 1.6E-10 84.8 5.0 41 21-61 3-45 (582)
239 PRK08275 putative oxidoreducta 98.0 7.5E-06 1.6E-10 84.5 5.0 53 279-332 137-194 (554)
240 PF01134 GIDA: Glucose inhibit 98.0 5.5E-06 1.2E-10 80.2 3.7 43 24-66 1-44 (392)
241 PRK06263 sdhA succinate dehydr 98.0 7.3E-06 1.6E-10 84.4 4.8 53 279-332 134-191 (543)
242 PRK05329 anaerobic glycerol-3- 98.0 8.5E-06 1.8E-10 80.6 4.9 51 280-332 260-312 (422)
243 COG1053 SdhA Succinate dehydro 98.0 8.9E-06 1.9E-10 83.1 5.1 46 18-63 2-47 (562)
244 PRK09077 L-aspartate oxidase; 97.9 1E-05 2.2E-10 83.2 5.5 40 20-60 6-45 (536)
245 COG3075 GlpB Anaerobic glycero 97.9 7.7E-06 1.7E-10 75.6 4.1 60 280-341 259-321 (421)
246 PRK08205 sdhA succinate dehydr 97.9 9.7E-06 2.1E-10 84.1 5.2 38 21-59 4-41 (583)
247 TIGR01176 fum_red_Fp fumarate 97.9 9.2E-06 2E-10 84.0 4.8 40 22-61 3-44 (580)
248 PF07992 Pyr_redox_2: Pyridine 97.9 1.6E-05 3.4E-10 70.6 4.8 34 24-57 1-34 (201)
249 PRK12771 putative glutamate sy 97.9 2.4E-05 5.1E-10 81.0 6.4 42 21-62 136-177 (564)
250 PRK06912 acoL dihydrolipoamide 97.8 1.8E-05 4E-10 79.8 5.2 40 24-64 2-41 (458)
251 PTZ00188 adrenodoxin reductase 97.8 2.4E-05 5.3E-10 77.8 5.6 43 22-64 39-82 (506)
252 COG2303 BetA Choline dehydroge 97.8 1.6E-05 3.4E-10 81.6 4.5 35 20-54 5-39 (542)
253 PF06039 Mqo: Malate:quinone o 97.8 0.0012 2.6E-08 64.7 16.2 61 271-333 169-239 (488)
254 PF00070 Pyr_redox: Pyridine n 97.8 4.3E-05 9.3E-10 57.2 5.0 35 24-58 1-35 (80)
255 TIGR02061 aprA adenosine phosp 97.8 2.8E-05 6.1E-10 80.6 5.1 34 24-57 1-38 (614)
256 KOG1335 Dihydrolipoamide dehyd 97.8 2.6E-05 5.7E-10 73.5 4.3 44 21-64 38-81 (506)
257 PRK13984 putative oxidoreducta 97.7 4.3E-05 9.3E-10 79.8 6.2 43 20-62 281-323 (604)
258 PRK07845 flavoprotein disulfid 97.7 3.4E-05 7.5E-10 77.9 5.1 41 23-64 2-42 (466)
259 TIGR00136 gidA glucose-inhibit 97.7 3.7E-05 7.9E-10 78.5 5.1 38 23-60 1-38 (617)
260 PRK07512 L-aspartate oxidase; 97.7 3.3E-05 7.2E-10 78.9 4.9 52 279-332 136-191 (513)
261 TIGR01811 sdhA_Bsu succinate d 97.7 2.7E-05 5.9E-10 80.9 4.3 36 25-60 1-36 (603)
262 TIGR01810 betA choline dehydro 97.7 3.1E-05 6.7E-10 79.6 4.3 33 24-56 1-34 (532)
263 KOG2853 Possible oxidoreductas 97.7 3.6E-05 7.8E-10 71.5 4.1 47 21-67 85-144 (509)
264 TIGR03452 mycothione_red mycot 97.7 3.9E-05 8.5E-10 77.2 4.8 40 22-64 2-41 (452)
265 PRK07846 mycothione reductase; 97.7 4.1E-05 8.9E-10 77.0 4.9 40 22-64 1-40 (451)
266 PRK08255 salicylyl-CoA 5-hydro 97.7 3.8E-05 8.3E-10 82.2 4.8 34 24-57 2-37 (765)
267 PRK13800 putative oxidoreducta 97.7 4.8E-05 1E-09 82.9 5.3 37 20-56 11-47 (897)
268 PLN02785 Protein HOTHEAD 97.6 7.9E-05 1.7E-09 77.0 5.4 35 21-56 54-88 (587)
269 TIGR03378 glycerol3P_GlpB glyc 97.6 6.8E-05 1.5E-09 73.5 4.5 56 279-336 263-321 (419)
270 COG4716 Myosin-crossreactive a 97.5 0.00075 1.6E-08 63.7 10.3 44 21-64 21-68 (587)
271 KOG2665 Predicted FAD-dependen 97.5 0.00013 2.8E-09 67.2 4.3 47 17-63 43-91 (453)
272 COG0445 GidA Flavin-dependent 97.4 0.00011 2.5E-09 72.6 3.8 35 20-54 2-36 (621)
273 PRK09897 hypothetical protein; 97.4 0.00018 3.9E-09 73.3 4.9 41 23-63 2-45 (534)
274 PF04820 Trp_halogenase: Trypt 97.3 0.00021 4.5E-09 71.8 4.0 54 279-334 154-208 (454)
275 KOG2404 Fumarate reductase, fl 97.2 0.00038 8.2E-09 64.4 4.6 43 20-62 7-49 (477)
276 PRK09754 phenylpropionate diox 97.2 0.00039 8.4E-09 68.8 5.1 50 280-333 187-236 (396)
277 KOG2311 NAD/FAD-utilizing prot 97.2 0.00034 7.3E-09 68.0 4.3 47 8-54 12-60 (679)
278 COG0029 NadB Aspartate oxidase 97.2 0.00036 7.8E-09 68.4 4.2 33 24-57 9-41 (518)
279 PRK09564 coenzyme A disulfide 97.1 0.00047 1E-08 69.3 4.4 51 279-333 191-241 (444)
280 KOG2960 Protein involved in th 97.1 0.00015 3.3E-09 63.0 0.8 40 23-62 77-118 (328)
281 COG0446 HcaD Uncharacterized N 97.0 0.0007 1.5E-08 66.9 4.6 40 23-62 137-176 (415)
282 PTZ00318 NADH dehydrogenase-li 97.0 0.00093 2E-08 66.7 5.4 37 20-56 8-44 (424)
283 PRK13512 coenzyme A disulfide 97.0 0.00082 1.8E-08 67.4 4.7 48 279-333 189-236 (438)
284 KOG1238 Glucose dehydrogenase/ 97.0 0.0011 2.3E-08 67.3 5.3 39 19-57 54-93 (623)
285 COG1206 Gid NAD(FAD)-utilizing 97.0 0.00073 1.6E-08 62.8 3.7 40 22-61 3-42 (439)
286 KOG0405 Pyridine nucleotide-di 96.9 0.0014 3E-08 61.5 5.5 44 21-64 19-62 (478)
287 KOG4716 Thioredoxin reductase 96.8 0.0011 2.3E-08 61.9 3.7 34 20-53 17-50 (503)
288 PF13454 NAD_binding_9: FAD-NA 96.6 0.0025 5.5E-08 54.2 4.1 36 26-62 1-42 (156)
289 TIGR02352 thiamin_ThiO glycine 96.6 0.0082 1.8E-07 57.6 8.1 60 271-333 126-188 (337)
290 KOG2852 Possible oxidoreductas 96.5 0.0017 3.8E-08 59.3 2.5 45 18-62 6-56 (380)
291 KOG3855 Monooxygenase involved 96.4 0.0038 8.3E-08 59.9 4.6 42 21-62 35-82 (481)
292 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0039 8.5E-08 54.6 4.1 33 24-56 2-34 (185)
293 TIGR03169 Nterm_to_SelD pyridi 96.3 0.0042 9.1E-08 60.6 4.5 48 280-334 192-239 (364)
294 COG2509 Uncharacterized FAD-de 96.3 0.012 2.6E-07 57.4 7.2 56 278-335 172-227 (486)
295 COG1252 Ndh NADH dehydrogenase 96.3 0.0055 1.2E-07 59.9 4.8 46 279-331 209-255 (405)
296 KOG1800 Ferredoxin/adrenodoxin 96.2 0.0054 1.2E-07 58.3 4.2 45 21-65 19-65 (468)
297 PRK09754 phenylpropionate diox 96.0 0.0075 1.6E-07 59.7 4.7 39 23-61 145-183 (396)
298 TIGR03197 MnmC_Cterm tRNA U-34 95.9 0.042 9.1E-07 54.0 9.4 58 271-332 124-184 (381)
299 COG3634 AhpF Alkyl hydroperoxi 95.9 0.0048 1E-07 57.9 2.4 40 21-62 210-249 (520)
300 PRK01438 murD UDP-N-acetylmura 95.9 0.012 2.5E-07 59.9 5.5 34 23-56 17-50 (480)
301 COG4529 Uncharacterized protei 95.9 0.01 2.2E-07 58.5 4.7 40 22-62 1-44 (474)
302 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.011 2.4E-07 51.5 4.5 33 24-56 1-33 (180)
303 PRK04965 NADH:flavorubredoxin 95.8 0.011 2.4E-07 58.0 4.9 51 280-333 184-234 (377)
304 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.011 2.4E-07 50.3 4.3 32 24-55 1-32 (157)
305 PF07156 Prenylcys_lyase: Pren 95.8 0.046 9.9E-07 53.2 8.7 112 206-334 68-183 (368)
306 KOG0042 Glycerol-3-phosphate d 95.7 0.0053 1.2E-07 60.8 2.0 40 22-61 67-106 (680)
307 PF13434 K_oxygenase: L-lysine 95.7 0.0081 1.7E-07 58.0 3.0 36 22-57 2-38 (341)
308 PRK04965 NADH:flavorubredoxin 95.6 0.016 3.5E-07 56.9 4.9 38 23-60 142-179 (377)
309 PRK02705 murD UDP-N-acetylmura 95.6 0.014 3.1E-07 58.9 4.6 34 24-57 2-35 (459)
310 PRK14989 nitrite reductase sub 95.5 0.018 4E-07 62.3 5.1 54 280-334 188-241 (847)
311 PRK07251 pyridine nucleotide-d 95.4 0.02 4.4E-07 57.4 5.1 38 23-60 158-195 (438)
312 PRK05976 dihydrolipoamide dehy 95.4 0.019 4.2E-07 58.2 4.7 37 23-59 181-217 (472)
313 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.018 3.9E-07 54.9 4.1 33 24-56 4-36 (308)
314 TIGR01350 lipoamide_DH dihydro 95.2 0.023 5E-07 57.4 4.8 37 23-59 171-207 (461)
315 PRK06249 2-dehydropantoate 2-r 95.2 0.029 6.4E-07 53.5 5.1 36 20-55 3-38 (313)
316 TIGR02053 MerA mercuric reduct 95.1 0.025 5.4E-07 57.2 4.7 38 23-60 167-204 (463)
317 PF02558 ApbA: Ketopantoate re 95.1 0.031 6.7E-07 47.0 4.6 31 25-55 1-31 (151)
318 PRK14106 murD UDP-N-acetylmura 95.1 0.031 6.7E-07 56.3 5.2 35 21-55 4-38 (450)
319 PRK06370 mercuric reductase; V 95.0 0.032 7E-07 56.4 5.1 38 23-60 172-209 (463)
320 TIGR01421 gluta_reduc_1 glutat 95.0 0.03 6.6E-07 56.3 4.8 37 23-59 167-203 (450)
321 TIGR02374 nitri_red_nirB nitri 95.0 0.025 5.5E-07 60.9 4.4 51 281-334 184-234 (785)
322 PRK06416 dihydrolipoamide dehy 94.9 0.032 7E-07 56.3 4.8 38 23-60 173-210 (462)
323 PRK11064 wecC UDP-N-acetyl-D-m 94.9 0.03 6.4E-07 55.7 4.4 34 23-56 4-37 (415)
324 PRK07818 dihydrolipoamide dehy 94.9 0.033 7.1E-07 56.4 4.8 38 23-60 173-210 (466)
325 PRK06467 dihydrolipoamide dehy 94.9 0.033 7.1E-07 56.5 4.8 38 23-60 175-212 (471)
326 PRK08293 3-hydroxybutyryl-CoA 94.9 0.035 7.5E-07 52.3 4.6 33 23-55 4-36 (287)
327 PRK06912 acoL dihydrolipoamide 94.9 0.035 7.5E-07 56.1 4.9 37 23-59 171-207 (458)
328 PRK06115 dihydrolipoamide dehy 94.9 0.036 7.7E-07 56.1 4.9 38 23-60 175-212 (466)
329 PRK07846 mycothione reductase; 94.8 0.036 7.7E-07 55.9 4.8 37 23-59 167-203 (451)
330 PRK07530 3-hydroxybutyryl-CoA 94.8 0.041 8.9E-07 52.0 5.0 34 22-55 4-37 (292)
331 TIGR03378 glycerol3P_GlpB glyc 94.8 0.11 2.4E-06 51.2 8.0 33 23-55 1-33 (419)
332 PRK13512 coenzyme A disulfide 94.8 0.035 7.5E-07 55.7 4.6 38 23-60 149-186 (438)
333 PF13738 Pyr_redox_3: Pyridine 94.7 0.078 1.7E-06 46.8 6.3 51 279-332 82-132 (203)
334 PRK06292 dihydrolipoamide dehy 94.7 0.041 8.8E-07 55.6 5.0 37 23-59 170-206 (460)
335 PRK09260 3-hydroxybutyryl-CoA 94.7 0.033 7.2E-07 52.5 4.0 33 24-56 3-35 (288)
336 PRK07819 3-hydroxybutyryl-CoA 94.7 0.042 9.1E-07 51.7 4.6 34 24-57 7-40 (286)
337 TIGR03385 CoA_CoA_reduc CoA-di 94.6 0.041 8.9E-07 55.0 4.7 36 23-58 138-173 (427)
338 PRK05249 soluble pyridine nucl 94.6 0.047 1E-06 55.1 5.2 38 23-60 176-213 (461)
339 COG0569 TrkA K+ transport syst 94.6 0.04 8.6E-07 49.9 4.1 33 24-56 2-34 (225)
340 TIGR02374 nitri_red_nirB nitri 94.6 0.041 8.9E-07 59.3 4.7 37 23-59 141-177 (785)
341 TIGR03862 flavo_PP4765 unchara 94.5 0.22 4.8E-06 48.6 9.3 57 271-332 77-135 (376)
342 PRK06327 dihydrolipoamide dehy 94.4 0.05 1.1E-06 55.2 4.8 38 23-60 184-221 (475)
343 PRK05808 3-hydroxybutyryl-CoA 94.4 0.05 1.1E-06 51.1 4.3 34 23-56 4-37 (282)
344 PRK07066 3-hydroxybutyryl-CoA 94.3 0.066 1.4E-06 51.1 5.1 34 23-56 8-41 (321)
345 TIGR03452 mycothione_red mycot 94.2 0.058 1.3E-06 54.3 4.7 37 23-59 170-206 (452)
346 COG1004 Ugd Predicted UDP-gluc 94.2 0.053 1.2E-06 52.2 4.0 32 24-55 2-33 (414)
347 TIGR03140 AhpF alkyl hydropero 94.1 0.057 1.2E-06 55.4 4.5 36 23-58 353-388 (515)
348 PRK04148 hypothetical protein; 94.1 0.046 9.9E-07 44.9 3.1 33 23-56 18-50 (134)
349 PRK09564 coenzyme A disulfide 94.0 0.067 1.5E-06 53.7 4.7 37 23-59 150-186 (444)
350 PRK07845 flavoprotein disulfid 94.0 0.081 1.7E-06 53.6 5.2 39 23-61 178-216 (466)
351 PRK06035 3-hydroxyacyl-CoA deh 93.9 0.071 1.5E-06 50.3 4.4 34 23-56 4-37 (291)
352 TIGR01316 gltA glutamate synth 93.9 0.07 1.5E-06 53.7 4.6 34 23-56 273-306 (449)
353 PRK14989 nitrite reductase sub 93.9 0.067 1.5E-06 58.0 4.7 36 24-59 147-182 (847)
354 PF01262 AlaDh_PNT_C: Alanine 93.8 0.089 1.9E-06 45.3 4.5 33 23-55 21-53 (168)
355 PTZ00153 lipoamide dehydrogena 93.8 0.074 1.6E-06 55.9 4.7 38 23-60 313-350 (659)
356 COG0686 Ald Alanine dehydrogen 93.8 0.048 1E-06 50.7 2.9 43 23-65 169-219 (371)
357 TIGR01424 gluta_reduc_2 glutat 93.8 0.08 1.7E-06 53.3 4.8 37 23-59 167-203 (446)
358 PTZ00058 glutathione reductase 93.8 0.074 1.6E-06 54.9 4.5 37 23-59 238-274 (561)
359 PRK06522 2-dehydropantoate 2-r 93.8 0.078 1.7E-06 50.2 4.4 32 24-55 2-33 (304)
360 COG1249 Lpd Pyruvate/2-oxoglut 93.7 0.087 1.9E-06 52.7 4.8 38 24-61 175-212 (454)
361 PF00890 FAD_binding_2: FAD bi 93.7 0.15 3.3E-06 50.6 6.6 36 24-59 1-36 (417)
362 PLN02545 3-hydroxybutyryl-CoA 93.7 0.1 2.2E-06 49.4 5.0 33 23-55 5-37 (295)
363 PRK15317 alkyl hydroperoxide r 93.7 0.078 1.7E-06 54.4 4.5 35 23-57 352-386 (517)
364 PRK10262 thioredoxin reductase 93.7 0.089 1.9E-06 50.3 4.7 35 23-57 147-181 (321)
365 cd01080 NAD_bind_m-THF_DH_Cycl 93.6 0.12 2.6E-06 44.4 4.9 34 21-54 43-77 (168)
366 PRK06130 3-hydroxybutyryl-CoA 93.6 0.093 2E-06 50.0 4.7 33 23-55 5-37 (311)
367 TIGR01320 mal_quin_oxido malat 93.6 0.23 4.9E-06 50.5 7.7 41 23-63 1-43 (483)
368 TIGR03026 NDP-sugDHase nucleot 93.6 0.075 1.6E-06 52.9 4.1 33 24-56 2-34 (411)
369 PRK12770 putative glutamate sy 93.6 0.083 1.8E-06 51.3 4.3 34 23-56 173-207 (352)
370 PLN02507 glutathione reductase 93.5 0.092 2E-06 53.6 4.7 36 23-58 204-239 (499)
371 TIGR03143 AhpF_homolog putativ 93.5 0.086 1.9E-06 54.6 4.5 35 23-57 144-178 (555)
372 PRK05708 2-dehydropantoate 2-r 93.4 0.1 2.2E-06 49.6 4.5 33 23-55 3-35 (305)
373 PRK08229 2-dehydropantoate 2-r 93.3 0.092 2E-06 50.7 4.1 32 24-55 4-35 (341)
374 PRK06116 glutathione reductase 93.3 0.11 2.4E-06 52.3 4.8 36 23-58 168-203 (450)
375 cd05292 LDH_2 A subgroup of L- 93.3 0.11 2.4E-06 49.4 4.6 32 24-55 2-35 (308)
376 PRK05257 malate:quinone oxidor 93.3 0.23 5E-06 50.6 7.1 62 270-333 171-241 (494)
377 PRK08010 pyridine nucleotide-d 93.3 0.12 2.5E-06 52.0 4.9 38 23-60 159-196 (441)
378 TIGR03377 glycerol3P_GlpA glyc 93.3 0.25 5.4E-06 50.7 7.4 59 271-332 118-184 (516)
379 PRK12831 putative oxidoreducta 93.3 0.1 2.2E-06 52.7 4.5 34 23-56 282-315 (464)
380 PRK12921 2-dehydropantoate 2-r 93.2 0.11 2.3E-06 49.3 4.3 30 24-53 2-31 (305)
381 PRK14618 NAD(P)H-dependent gly 93.1 0.14 3E-06 49.2 5.0 33 23-55 5-37 (328)
382 TIGR01763 MalateDH_bact malate 93.1 0.14 3E-06 48.7 4.9 34 23-56 2-36 (305)
383 PLN02353 probable UDP-glucose 93.0 0.11 2.4E-06 52.3 4.3 34 23-56 2-37 (473)
384 PF04820 Trp_halogenase: Trypt 93.0 0.31 6.7E-06 49.1 7.4 34 24-57 1-37 (454)
385 PLN02546 glutathione reductase 93.0 0.13 2.8E-06 53.2 4.8 37 23-59 253-289 (558)
386 TIGR01292 TRX_reduct thioredox 92.9 0.13 2.9E-06 48.3 4.5 35 23-57 142-176 (300)
387 KOG0404 Thioredoxin reductase 92.9 0.11 2.5E-06 45.9 3.6 42 23-64 9-54 (322)
388 TIGR01470 cysG_Nterm siroheme 92.9 0.15 3.2E-06 45.5 4.4 35 21-55 8-42 (205)
389 PRK00094 gpsA NAD(P)H-dependen 92.8 0.15 3.2E-06 48.9 4.7 32 24-55 3-34 (325)
390 PRK13748 putative mercuric red 92.8 0.14 3E-06 53.1 4.8 34 23-56 271-304 (561)
391 KOG3923 D-aspartate oxidase [A 92.8 0.12 2.6E-06 47.8 3.7 33 22-54 3-42 (342)
392 PRK06134 putative FAD-binding 92.7 0.39 8.5E-06 50.0 8.0 53 279-333 217-273 (581)
393 PRK11199 tyrA bifunctional cho 92.7 0.17 3.6E-06 49.6 5.0 41 15-55 91-132 (374)
394 PF03446 NAD_binding_2: NAD bi 92.7 0.17 3.8E-06 43.2 4.6 33 23-55 2-34 (163)
395 PRK14619 NAD(P)H-dependent gly 92.7 0.17 3.8E-06 48.1 5.0 33 23-55 5-37 (308)
396 PRK14694 putative mercuric red 92.7 0.16 3.5E-06 51.4 5.0 33 23-55 179-211 (468)
397 PRK12409 D-amino acid dehydrog 92.6 0.57 1.2E-05 46.4 8.7 60 270-332 185-252 (410)
398 TIGR00518 alaDH alanine dehydr 92.6 0.16 3.4E-06 49.7 4.6 34 22-55 167-200 (370)
399 PF13241 NAD_binding_7: Putati 92.5 0.11 2.3E-06 40.8 2.7 37 19-55 4-40 (103)
400 PRK01710 murD UDP-N-acetylmura 92.5 0.16 3.4E-06 51.4 4.6 32 24-55 16-47 (458)
401 PLN02695 GDP-D-mannose-3',5'-e 92.5 0.22 4.8E-06 48.7 5.5 42 13-54 12-54 (370)
402 COG3486 IucD Lysine/ornithine 92.4 0.16 3.5E-06 49.1 4.2 39 19-57 2-41 (436)
403 PRK07121 hypothetical protein; 92.4 0.39 8.5E-06 48.9 7.4 55 277-332 175-233 (492)
404 PRK14727 putative mercuric red 92.4 0.19 4.1E-06 51.1 5.1 33 23-55 189-221 (479)
405 PF13478 XdhC_C: XdhC Rossmann 92.2 0.18 4E-06 41.7 3.9 32 25-56 1-32 (136)
406 PRK04308 murD UDP-N-acetylmura 92.2 0.23 5E-06 49.9 5.4 35 23-57 6-40 (445)
407 COG1748 LYS9 Saccharopine dehy 92.2 0.19 4E-06 49.0 4.5 45 23-67 2-55 (389)
408 PF02254 TrkA_N: TrkA-N domain 92.2 0.24 5.2E-06 39.4 4.5 32 25-56 1-32 (116)
409 PRK06719 precorrin-2 dehydroge 92.2 0.22 4.7E-06 42.4 4.4 34 19-52 10-43 (157)
410 PRK07417 arogenate dehydrogena 92.2 0.17 3.8E-06 47.4 4.2 32 24-55 2-33 (279)
411 cd01075 NAD_bind_Leu_Phe_Val_D 92.1 0.31 6.6E-06 43.3 5.5 36 20-55 26-61 (200)
412 PRK06718 precorrin-2 dehydroge 92.1 0.22 4.7E-06 44.3 4.4 34 20-53 8-41 (202)
413 PRK15057 UDP-glucose 6-dehydro 92.0 0.18 3.9E-06 49.6 4.3 33 24-57 2-34 (388)
414 COG2509 Uncharacterized FAD-de 92.0 0.15 3.3E-06 49.9 3.5 43 18-60 14-61 (486)
415 PRK04690 murD UDP-N-acetylmura 92.0 0.19 4E-06 50.9 4.4 34 23-56 9-42 (468)
416 KOG2304 3-hydroxyacyl-CoA dehy 91.9 0.18 3.9E-06 44.8 3.6 35 22-56 11-45 (298)
417 PF01134 GIDA: Glucose inhibit 91.9 0.57 1.2E-05 45.8 7.4 53 279-333 95-147 (392)
418 PRK11749 dihydropyrimidine deh 91.9 0.2 4.4E-06 50.5 4.6 34 23-56 274-308 (457)
419 PTZ00052 thioredoxin reductase 91.8 0.21 4.6E-06 51.0 4.7 31 24-54 184-214 (499)
420 PRK10157 putative oxidoreducta 91.8 0.55 1.2E-05 47.0 7.5 49 280-331 109-157 (428)
421 PRK02472 murD UDP-N-acetylmura 91.8 0.24 5.1E-06 49.8 5.0 33 23-55 6-38 (447)
422 PRK07531 bifunctional 3-hydrox 91.8 0.22 4.7E-06 50.8 4.7 32 24-55 6-37 (495)
423 TIGR01438 TGR thioredoxin and 91.7 0.2 4.2E-06 51.0 4.3 31 24-54 182-212 (484)
424 PRK03803 murD UDP-N-acetylmura 91.7 0.25 5.3E-06 49.8 4.9 38 18-55 2-39 (448)
425 PRK14620 NAD(P)H-dependent gly 91.7 0.23 5E-06 47.7 4.5 32 24-55 2-33 (326)
426 PRK03369 murD UDP-N-acetylmura 91.6 0.22 4.8E-06 50.7 4.6 32 23-54 13-44 (488)
427 PRK12843 putative FAD-binding 91.6 0.59 1.3E-05 48.7 7.8 52 279-332 221-276 (578)
428 TIGR01423 trypano_reduc trypan 91.6 0.23 5E-06 50.5 4.7 37 23-59 188-227 (486)
429 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.6 0.2 4.3E-06 51.0 4.1 34 23-56 6-39 (503)
430 PRK00141 murD UDP-N-acetylmura 91.5 0.26 5.7E-06 49.9 5.0 40 14-55 9-48 (473)
431 PTZ00318 NADH dehydrogenase-li 91.4 0.27 5.9E-06 49.1 4.8 37 24-60 175-225 (424)
432 PRK05329 anaerobic glycerol-3- 91.3 0.78 1.7E-05 45.6 7.9 34 22-55 2-35 (422)
433 PRK06481 fumarate reductase fl 91.3 0.68 1.5E-05 47.4 7.7 51 280-332 191-245 (506)
434 COG0771 MurD UDP-N-acetylmuram 91.3 0.23 5.1E-06 49.3 4.1 36 22-57 7-42 (448)
435 TIGR01915 npdG NADPH-dependent 91.2 0.29 6.3E-06 44.1 4.4 32 24-55 2-34 (219)
436 PF10727 Rossmann-like: Rossma 91.2 0.16 3.5E-06 41.4 2.4 37 20-56 8-44 (127)
437 PF01488 Shikimate_DH: Shikima 91.2 0.37 8E-06 39.8 4.7 33 22-54 12-45 (135)
438 PRK08773 2-octaprenyl-3-methyl 91.1 0.78 1.7E-05 45.1 7.7 38 20-57 4-41 (392)
439 PRK08268 3-hydroxy-acyl-CoA de 91.1 0.28 6E-06 50.1 4.5 34 23-56 8-41 (507)
440 PRK09424 pntA NAD(P) transhydr 90.9 0.26 5.6E-06 50.0 4.2 34 22-55 165-198 (509)
441 PRK06847 hypothetical protein; 90.9 0.82 1.8E-05 44.6 7.7 51 279-332 107-157 (375)
442 PRK12835 3-ketosteroid-delta-1 90.8 0.69 1.5E-05 48.3 7.3 54 278-332 212-269 (584)
443 PRK11730 fadB multifunctional 90.8 0.24 5.2E-06 52.9 4.0 34 23-56 314-347 (715)
444 TIGR02354 thiF_fam2 thiamine b 90.8 0.38 8.2E-06 42.7 4.7 33 22-54 21-54 (200)
445 PRK13339 malate:quinone oxidor 90.8 0.82 1.8E-05 46.5 7.6 62 270-333 172-242 (497)
446 PRK12778 putative bifunctional 90.5 0.29 6.4E-06 52.7 4.4 34 23-56 571-605 (752)
447 TIGR01813 flavo_cyto_c flavocy 90.5 0.67 1.5E-05 46.4 6.7 53 279-332 130-186 (439)
448 TIGR01505 tartro_sem_red 2-hyd 90.5 0.32 6.9E-06 45.9 4.1 32 24-55 1-32 (291)
449 PRK04176 ribulose-1,5-biphosph 90.4 0.96 2.1E-05 41.8 7.2 52 279-331 104-166 (257)
450 TIGR01816 sdhA_forward succina 90.4 1 2.2E-05 46.8 8.1 58 273-332 112-175 (565)
451 PRK07333 2-octaprenyl-6-methox 90.3 0.92 2E-05 44.7 7.5 52 279-333 111-163 (403)
452 TIGR02437 FadB fatty oxidation 90.3 0.33 7.1E-06 51.8 4.4 34 23-56 314-347 (714)
453 cd05291 HicDH_like L-2-hydroxy 90.2 0.4 8.7E-06 45.6 4.6 33 24-56 2-36 (306)
454 COG1250 FadB 3-hydroxyacyl-CoA 90.2 0.37 8.1E-06 45.5 4.2 32 23-54 4-35 (307)
455 TIGR01984 UbiH 2-polyprenyl-6- 90.1 1 2.2E-05 44.1 7.5 34 24-57 1-35 (382)
456 PRK06223 malate dehydrogenase; 90.1 0.44 9.6E-06 45.3 4.8 34 23-56 3-37 (307)
457 PRK00683 murD UDP-N-acetylmura 90.1 0.36 7.7E-06 48.1 4.3 34 23-56 4-37 (418)
458 PF00070 Pyr_redox: Pyridine n 90.0 0.89 1.9E-05 33.5 5.4 42 278-322 39-80 (80)
459 PRK15461 NADH-dependent gamma- 89.9 0.39 8.4E-06 45.4 4.2 32 24-55 3-34 (296)
460 cd01339 LDH-like_MDH L-lactate 89.8 0.39 8.4E-06 45.6 4.1 31 25-55 1-32 (300)
461 PRK02006 murD UDP-N-acetylmura 89.8 0.38 8.2E-06 49.1 4.3 33 23-55 8-40 (498)
462 TIGR01988 Ubi-OHases Ubiquinon 89.8 1 2.3E-05 43.9 7.3 53 279-334 106-160 (385)
463 PRK01368 murD UDP-N-acetylmura 89.7 0.37 8.1E-06 48.5 4.1 31 23-54 7-37 (454)
464 TIGR00275 flavoprotein, HI0933 89.7 1.6 3.5E-05 43.2 8.6 36 26-61 1-36 (400)
465 cd05191 NAD_bind_amino_acid_DH 89.6 0.82 1.8E-05 34.4 5.0 32 22-53 23-55 (86)
466 PRK10015 oxidoreductase; Provi 89.6 1.2 2.6E-05 44.5 7.7 50 280-332 109-158 (429)
467 cd00401 AdoHcyase S-adenosyl-L 89.6 0.45 9.8E-06 47.0 4.5 35 22-56 202-236 (413)
468 PLN02657 3,8-divinyl protochlo 89.6 0.81 1.8E-05 45.1 6.3 41 15-55 53-94 (390)
469 TIGR02964 xanthine_xdhC xanthi 89.6 0.55 1.2E-05 43.1 4.8 35 22-56 100-134 (246)
470 PRK08306 dipicolinate synthase 89.5 0.63 1.4E-05 44.0 5.2 34 22-55 152-185 (296)
471 PRK00421 murC UDP-N-acetylmura 89.4 0.41 8.9E-06 48.4 4.2 34 23-56 8-42 (461)
472 PRK15116 sulfur acceptor prote 89.4 0.56 1.2E-05 43.5 4.7 35 22-56 30-65 (268)
473 PRK12842 putative succinate de 89.4 1.1 2.4E-05 46.7 7.4 52 279-332 214-269 (574)
474 COG0654 UbiH 2-polyprenyl-6-me 89.4 1.1 2.5E-05 44.0 7.2 33 22-54 2-34 (387)
475 PRK12844 3-ketosteroid-delta-1 89.3 1.1 2.4E-05 46.4 7.4 53 278-332 207-263 (557)
476 PLN02464 glycerol-3-phosphate 89.3 1.5 3.2E-05 46.2 8.3 54 279-332 232-290 (627)
477 TIGR02441 fa_ox_alpha_mit fatt 89.2 0.39 8.4E-06 51.4 4.0 34 23-56 336-369 (737)
478 PRK06834 hypothetical protein; 89.1 1.3 2.8E-05 45.2 7.6 52 279-333 100-152 (488)
479 COG0665 DadA Glycine/D-amino a 89.1 1.5 3.2E-05 42.9 7.9 40 20-59 2-41 (387)
480 TIGR00292 thiazole biosynthesi 89.1 1.6 3.5E-05 40.2 7.6 54 279-334 100-167 (254)
481 PTZ00082 L-lactate dehydrogena 89.1 0.69 1.5E-05 44.3 5.2 35 23-57 7-42 (321)
482 COG2085 Predicted dinucleotide 89.0 0.52 1.1E-05 41.6 4.0 31 24-54 3-33 (211)
483 PRK05714 2-octaprenyl-3-methyl 89.0 1.3 2.9E-05 43.7 7.5 35 22-56 2-36 (405)
484 cd01065 NAD_bind_Shikimate_DH 88.9 0.78 1.7E-05 38.5 5.0 34 22-55 19-53 (155)
485 PRK07045 putative monooxygenas 88.9 1.4 3.1E-05 43.2 7.5 54 280-334 107-162 (388)
486 PRK06175 L-aspartate oxidase; 88.9 1.4 3E-05 44.2 7.5 58 273-332 121-183 (433)
487 PRK11559 garR tartronate semia 88.8 0.56 1.2E-05 44.3 4.4 32 24-55 4-35 (296)
488 PTZ00142 6-phosphogluconate de 88.8 0.47 1E-05 47.9 4.0 34 23-56 2-35 (470)
489 cd01078 NAD_bind_H4MPT_DH NADP 88.7 0.81 1.8E-05 40.2 5.1 33 22-54 28-61 (194)
490 PRK14573 bifunctional D-alanyl 88.6 0.5 1.1E-05 51.3 4.5 37 20-56 2-39 (809)
491 TIGR02440 FadJ fatty oxidation 88.5 0.47 1E-05 50.5 4.1 34 23-56 305-339 (699)
492 TIGR02032 GG-red-SF geranylger 88.5 1.5 3.3E-05 40.8 7.2 51 279-332 91-142 (295)
493 PRK12779 putative bifunctional 88.4 0.55 1.2E-05 51.7 4.6 34 23-56 448-481 (944)
494 PRK12839 hypothetical protein; 88.4 1.5 3.1E-05 45.7 7.5 53 279-332 214-270 (572)
495 PRK07843 3-ketosteroid-delta-1 88.3 1.5 3.3E-05 45.4 7.6 52 279-332 208-263 (557)
496 PRK12549 shikimate 5-dehydroge 88.3 0.69 1.5E-05 43.5 4.6 33 23-55 128-161 (284)
497 PRK07190 hypothetical protein; 88.3 1.5 3.2E-05 44.7 7.3 52 280-334 110-162 (487)
498 KOG1336 Monodehydroascorbate/f 88.2 1.2 2.7E-05 44.0 6.3 53 279-332 255-307 (478)
499 PRK07831 short chain dehydroge 88.2 0.98 2.1E-05 41.6 5.5 34 22-55 17-52 (262)
500 TIGR00561 pntA NAD(P) transhyd 88.1 0.6 1.3E-05 47.4 4.2 33 23-55 165-197 (511)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=1.8e-58 Score=447.79 Aligned_cols=347 Identities=36% Similarity=0.659 Sum_probs=268.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (416)
|+++|||||+|+|+.+++.|++|+++|++|+|+|+|++|||.++|+++.++..|....... ..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~ 63 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP 63 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence 4678999999999999999999999999999999999999999999999887786543110 01
Q ss_pred ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (416)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (416)
+.+ +..|+|++||. |+++++++.++++|.++++.+|++|+.++..|++. +|++.++|+++.++|+++.+++.+||++
T Consensus 64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l 140 (438)
T PF00996_consen 64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL 140 (438)
T ss_dssp HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence 112 45789999997 99999999999999999999999999999999886 8899999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (416)
|||+.++.++.+..+..+. ..+....|+.+++++|++++.+++++.|++++..-+.. ..-++.+++.++..|+
T Consensus 141 mkFl~~v~~~~~~~~~~~~----~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 141 MKFLKFVANYEEDDPSTHK----GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHGCTTBGGGST----TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcchhh----ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence 9999999887543222111 11344689999999999999999999998887642211 1225678899999999
Q ss_pred hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 014883 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (416)
Q Consensus 259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~ 338 (416)
.|+++||.+ +|+||.||.++|+|+|||+++..||.++||++|++|..+ ++|++++|. .+|++++|++||++|+|.
T Consensus 214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~-~~g~~~gV~-s~ge~v~~k~vI~dpsy~- 288 (438)
T PF00996_consen 214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVD-EDGKVIGVK-SEGEVVKAKKVIGDPSYL- 288 (438)
T ss_dssp HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEE-TTTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeee-cCCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence 999999964 699999999999999999999999999999999999997 378888998 599999999999999886
Q ss_pred CCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (416)
Q Consensus 339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~--~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~ 416 (416)
|.- ....++|+|+|+|+++|+.+. ..+++++|||.+.+. .++|||+++|+++++||+|+
T Consensus 289 p~~-----------------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~~--~~dIyv~~~ss~~~~CP~G~ 349 (438)
T PF00996_consen 289 PEK-----------------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVGR--KSDIYVLQLSSSTGVCPKGQ 349 (438)
T ss_dssp GCG-----------------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCTS--SS-EEEEEEEGGGTSS-TT-
T ss_pred ccc-----------------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccCC--CCCeEEEEECCCccccCCCc
Confidence 321 113578999999999999864 356778899876553 46799999999999999996
No 2
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=2.2e-55 Score=432.32 Aligned_cols=348 Identities=29% Similarity=0.528 Sum_probs=288.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (416)
|+++|||||||||++||++|+.|+++|++|+|||+|++|||+++|+++.++..|+... .+. +
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~-~~~-----------------~ 62 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPG-ETP-----------------P 62 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhccc-CCC-----------------c
Confidence 4678999999999999999999999999999999999999999999998764343211 110 1
Q ss_pred ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (416)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (416)
+.+ +..+.|++|+. |++++.++.++++|.++++.+|++|+.++..|++..+|+++++|.++.++|+++.+++.+|+++
T Consensus 63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l 140 (443)
T PTZ00363 63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC 140 (443)
T ss_pred hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence 112 35688999996 9999999999999999999999999999999987348899999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (416)
|+|++++.++....+.... ...+...|+.+|++++++++.+++++.+++++.... +. .+.++..++.++..|+
T Consensus 141 ~kfl~~v~~~~~~~~~~~~----~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~y~ 213 (443)
T PTZ00363 141 KNFLQYVSNYDENDPETHK----GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKLYM 213 (443)
T ss_pred HHHHHHHHhhccCChhhhc----ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHHHH
Confidence 9999998876543221111 012346899999999999999999988877664211 10 0134667788999999
Q ss_pred hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 014883 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (416)
Q Consensus 259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~ 338 (416)
.|+++||. +++.||+||+++|+++|+|.++++|++|+|+++|++|..+ +++++++|++++|++++|++||++|++.
T Consensus 214 ~S~~~~g~--~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~~- 289 (443)
T PTZ00363 214 DSLSRYGK--SPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSYF- 289 (443)
T ss_pred HHHhhccC--CcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECcccc-
Confidence 99999985 3578999999999999999999999999999999999987 3578889999999999999999999886
Q ss_pred CCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (416)
Q Consensus 339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~--~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~ 416 (416)
|.. ....++|+|+|||+++|+.+ +.++++++|||.+.+. .++|||+++|+++++||+|+
T Consensus 290 p~~-----------------~~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~ 350 (443)
T PTZ00363 290 PDK-----------------VKKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK 350 (443)
T ss_pred ccc-----------------cccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence 331 11478999999999999964 3467889999988765 47899999999999999996
No 3
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-50 Score=370.44 Aligned_cols=346 Identities=32% Similarity=0.554 Sum_probs=288.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (416)
|+..|||||+|+|+..++.++.|+.+|++|+|+|+|++|||-.+|.++..+..|+...... .+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~-----------------~~ 63 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEK-----------------PP 63 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhcccccc-----------------Cc
Confidence 3456999999999999999999999999999999999999999999988877776633110 00
Q ss_pred ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (416)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (416)
+.. ...++|++|+. |++++..+.++.+|.+.++.+|++|+.+++.|++. +|+++++|.++.+++.++.+++.+|+++
T Consensus 64 ~~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~ 140 (440)
T KOG1439|consen 64 EKL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRV 140 (440)
T ss_pred ccc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHH
Confidence 111 35688999998 99999999999999999999999999999999987 7799999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccccccccccccC-CcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHH
Q 014883 179 MRFFKLVQGHLSLDESEENNVRISEEDLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 257 (416)
|||+.++.++.+..+... ...+.. .++.+++.++++....+++..+++++...+. . -+.++..++.++..|
T Consensus 141 ~kFl~~V~n~~e~~~~~~-----~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~-~--ld~p~~~~~~ri~~Y 212 (440)
T KOG1439|consen 141 MKFLKFVLNYDEEDPKTW-----QGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDS-Y--LDQPAKETLERILLY 212 (440)
T ss_pred HHHHHHHhhhhhhccccc-----cccccccchHHHHHHHhcccccceeeeeeeeEEEecch-h--ccCccHHHHHHHHHH
Confidence 999999988765433211 112232 4999999999999999998877665532211 0 124677889999999
Q ss_pred HhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 014883 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (416)
Q Consensus 258 ~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~ 337 (416)
++|+++||.. +++||.||.++|+|+|||.++..||+++||.++.+|..++ +|++.+|+ ..++..+++.+|++|+|.
T Consensus 213 ~~S~~~yg~~--~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~ 288 (440)
T KOG1439|consen 213 VRSFARYGKS--PYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF 288 (440)
T ss_pred HHHHhhcCCC--cceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc
Confidence 9999999964 4899999999999999999999999999999999999853 78888887 567788999999999986
Q ss_pred CCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC--CCCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCC
Q 014883 338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL--KPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415 (416)
Q Consensus 338 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~--~~~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G 415 (416)
+. +....++++|++||.+.|. ..+.++++++|||.+.+. .++|+|..+|+++++||+|
T Consensus 289 -~~-----------------~~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~r--ksdi~v~~~ss~~~vcpeG 348 (440)
T KOG1439|consen 289 -PQ-----------------KVKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVGR--KSDIYVFGLSSAHNVCPEG 348 (440)
T ss_pred -hH-----------------HHHhhhheeeeeEEecCCcCcCCccceeeEEechhhhCC--cccEEEEEeccCCCcCCCc
Confidence 22 1123578999999999775 567788999999887765 6899999999999999999
Q ss_pred C
Q 014883 416 M 416 (416)
Q Consensus 416 ~ 416 (416)
|
T Consensus 349 ~ 349 (440)
T KOG1439|consen 349 K 349 (440)
T ss_pred e
Confidence 7
No 4
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-49 Score=364.97 Aligned_cols=365 Identities=36% Similarity=0.611 Sum_probs=286.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChh--------hhHhhhh---cCCCC--------
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTP-------- 79 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~--------~~~~~~~---~~~~~-------- 79 (416)
.++.|||||||+|+...+.|++.+++|.+|++||+|.+|||.|+||.+. .+....+ +...+
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~ 84 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA 84 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence 4678999999999999999999999999999999999999999999986 3323321 11111
Q ss_pred --CCCCCCCccccccccc---------------cccccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccc
Q 014883 80 --SSVCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142 (416)
Q Consensus 80 --~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~ 142 (416)
++...+.+|.+.+..+ .....+....|+|++||. |+++++.+.++++|.++++.+|.+|+.+
T Consensus 85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V 163 (547)
T KOG4405|consen 85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV 163 (547)
T ss_pred CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence 1111123333333221 011123346799999998 9999999999999999999999999999
Q ss_pred cceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChh
Q 014883 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK 222 (416)
Q Consensus 143 ~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~ 222 (416)
+..+.+. .|++..+|+++.++|.++.++..+|+.||||++++.++..+. ..+...+..+.||.+||++++++++
T Consensus 164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~ 237 (547)
T KOG4405|consen 164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK 237 (547)
T ss_pred chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence 9988776 789999999999999999999999999999999999885221 1112335567899999999999999
Q ss_pred HHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCce
Q 014883 223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (416)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V 302 (416)
++.++.+++++.... +.++..++.+...|+.|+|+||+. +|++|.||.|+|+|+|||+|++.|+.+.|+++|
T Consensus 238 lqs~vl~aIaM~~~~------~~tt~eGm~at~~fl~slGrfgnt--pfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V 309 (547)
T KOG4405|consen 238 LQSIVLHAIAMLSES------QLTTIEGMDATKNFLTSLGRFGNT--PFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV 309 (547)
T ss_pred hHHHHHHHHHhcCcc------cccHHHHHHHHHHHHHHhhccCCC--cceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence 999999999986543 246888999999999999999974 599999999999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCC-C
Q 014883 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-S 381 (416)
Q Consensus 303 ~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~-~ 381 (416)
+.|..|++.+++..+....|+.+.|+++|+.|.++ |... . .+....+|+|+++||+++..+.+ +
T Consensus 310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~-------------~~~~~K~Israv~itd~sil~~e~~ 374 (547)
T KOG4405|consen 310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-C-------------SRVQLKQISRAVLITDPSILKTELD 374 (547)
T ss_pred hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-c-------------cccchhhcceeEEecCccccchhHH
Confidence 99999854443322323579999999999999987 4321 1 12234479999999999986543 3
Q ss_pred ce--EEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883 382 NF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (416)
Q Consensus 382 ~~--~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~ 416 (416)
+. ++.+++...+ .-.|++++++++++.||+|.
T Consensus 375 q~~~ll~~~~~epg---~~avr~iel~~~t~tc~kg~ 408 (547)
T KOG4405|consen 375 QQLSLLSLLAVEPG---AMAVRLIELCSSTMTCPKGT 408 (547)
T ss_pred hhhhhhhccccCcc---hhhHHHHHhhcccccCccce
Confidence 32 3445543222 46799999999999999984
No 5
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-47 Score=349.78 Aligned_cols=341 Identities=31% Similarity=0.537 Sum_probs=283.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (416)
.+.|||||+|+|+..++.+++|+.+|++|+|+|+|+.||+-.+|.++..+..|++......+
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~------------------ 65 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPS------------------ 65 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhcccc------------------
Confidence 34799999999999999999999999999999999999999999999888888776522100
Q ss_pred cccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHH
Q 014883 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (416)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~ 179 (416)
-....++|++|+. |++++..++++.+|.+.++.+|++|+++..+|++. +|+++++|.++.++|.++.+++.+|+++|
T Consensus 66 -k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~vm 142 (434)
T COG5044 66 -KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVM 142 (434)
T ss_pred -ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHHH
Confidence 0124678999998 99999999999999999999999999999999887 66999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883 180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (416)
||++++..+.+.. ....+.+.++++.+++. +|+++....+++.+++++.. +. +++++.++.++..|+
T Consensus 143 rFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl-----~~p~re~~erIl~Y~ 210 (434)
T COG5044 143 RFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DL-----DIPAREALERILRYM 210 (434)
T ss_pred HHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-cc-----cCCchHHHHHHHHHH
Confidence 9999988775421 11122345567777765 79999999999999877742 22 357888999999999
Q ss_pred hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 014883 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (416)
Q Consensus 259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~ 338 (416)
+|++.||. .+++||++|.++|+|.|||.++..||+++||+++.+|.-. ..+.+|. .++.+..|.+||.+|++.
T Consensus 211 ~Sf~~yg~--~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~- 283 (434)
T COG5044 211 RSFGDYGK--SPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF- 283 (434)
T ss_pred HhhcccCC--CcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc-
Confidence 99999995 4599999999999999999999999999999999999754 3334665 567789999999998876
Q ss_pred CCCCCCchhhhhhhhhhccccCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCC
Q 014883 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415 (416)
Q Consensus 339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~---~p~~~~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G 415 (416)
+.-.. .+.| ...++|++||.. .|+....++++++|||.++.. .+.|+|..+|+++++||+|
T Consensus 284 ~~~~~-----------~~~q---~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPEG 347 (434)
T COG5044 284 REDSK-----------SVGQ---FYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPEG 347 (434)
T ss_pred ccccc-----------ccch---hhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCCc
Confidence 22000 0111 146899999877 456778899999999998876 4679999999999999999
Q ss_pred C
Q 014883 416 M 416 (416)
Q Consensus 416 ~ 416 (416)
|
T Consensus 348 y 348 (434)
T COG5044 348 Y 348 (434)
T ss_pred e
Confidence 7
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.97 E-value=8.5e-29 Score=251.79 Aligned_cols=334 Identities=15% Similarity=0.143 Sum_probs=207.5
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccCC
Q 014883 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH 104 (416)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (416)
|||||||++||+||++|+++|++|+||||++++||+++|++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~------------------------------------- 43 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD------------------------------------- 43 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence 6999999999999999999999999999999999999998754
Q ss_pred CCceEeeCCCCeEEeeCchHHHHHHhcCc--cccccccccccee-eeccCCceeecCCChhhhhhc-CCCChHHHHHHHH
Q 014883 105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR 180 (416)
Q Consensus 105 ~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~--~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l~~ 180 (416)
+|.+|. |++++..++.+.+++.++|. .+++++...++.+ ++..||+.+.++.+....... ..+.+.+...+.+
T Consensus 44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 120 (502)
T TIGR02734 44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR 120 (502)
T ss_pred --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence 356888 58988766667777787774 5677887777655 333467778887765322210 1233555555666
Q ss_pred HHHHHHhhcC-------CCcccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhc
Q 014883 181 FFKLVQGHLS-------LDESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK 246 (416)
Q Consensus 181 ~~~~~~~~~~-------~~~~~~--~~-----~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 246 (416)
|++.++.... ..+... .. ......+...|+.+|++++..++.++.++.+..... ..++ .+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~--g~~p--~~~~ 196 (502)
T TIGR02734 121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL--GGNP--FRTP 196 (502)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee--ccCc--ccch
Confidence 6554433211 001000 00 011123456899999999888888888775321111 1222 1222
Q ss_pred hhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 014883 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (416)
Q Consensus 247 ~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~ 326 (416)
+ +..+..+.. +. +..++|.||++.++++|.+.+++.|++|+++++|++|.++ ++++++|++.+|+++.
T Consensus 197 ~---~~~l~~~~~----~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 197 S---IYALISALE----RE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD 264 (502)
T ss_pred H---HHHHHHHHH----hh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence 2 111222211 11 1256899999999999999999999999999999999987 6777899988999999
Q ss_pred cCEEEECCC--CCCCCCCCCchhhhhhhh-hhccccCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCC--------
Q 014883 327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL-------- 392 (416)
Q Consensus 327 Ad~VI~~p~--~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~k~i~i~~---~p~~~~~~~~~~~~pp~~~-------- 392 (416)
||+||++.+ .++..|... ...+... +.+.......+.....+.++ +++...+...++..+-...
T Consensus 265 ad~VI~a~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLLPN--HPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK 342 (502)
T ss_pred CCEEEECCcHHHHHHHhcCc--cccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence 999996533 343333211 1111111 12222222334555555566 4554333333333231110
Q ss_pred CC-CCCCeEEEEEecC-CCccCCCCC
Q 014883 393 FP-EQVTSIRVLQLGG-NLAVCPLGM 416 (416)
Q Consensus 393 ~~-~~~~~v~~~~~~~-~~~~~p~G~ 416 (416)
+. ...+.++|...+. |.+.+|+|+
T Consensus 343 g~~~~~p~~~v~~~s~~dp~~aP~G~ 368 (502)
T TIGR02734 343 GRLAEDPSLYLHRPTVTDPSLAPPGC 368 (502)
T ss_pred CCCCCCCcEEEEcCCCCCCCCCCCCC
Confidence 00 1246788877654 578899985
No 7
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.9e-28 Score=246.63 Aligned_cols=260 Identities=20% Similarity=0.248 Sum_probs=168.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (416)
|+.+||||||||++||+||++||++|++|+||||++++||+++|++++
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-------------------------------- 48 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-------------------------------- 48 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence 356899999999999999999999999999999999999999998764
Q ss_pred cccCCCCceEeeCCCCeEEeeCchHHHHHHhcC-cccc-ccccccccee-eeccCCceeecCCChhhhhh-cCCCChHHH
Q 014883 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK 175 (416)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g-~~~~-~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~-~~~l~~~~k 175 (416)
+|.+|. ||+++...... .++.+++ +..+ +++...++.+ .+..+|....+..+...... ....++.+.
T Consensus 49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~ 119 (487)
T COG1233 49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG 119 (487)
T ss_pred -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence 366888 48887666654 5666666 5555 6777766666 33445777877766543222 122334444
Q ss_pred HHHHHHHHHHHhhc----C----CCccccc-ccccc------ccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchh
Q 014883 176 NQLMRFFKLVQGHL----S----LDESEEN-NVRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (416)
Q Consensus 176 ~~l~~~~~~~~~~~----~----~~~~~~~-~~~~~------~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (416)
..+.+++..+.+.. . ...+... ..... ......+..++++....++.++..+.+..... . ..|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~-~-~~p 197 (487)
T COG1233 120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG-G-APP 197 (487)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCC
Confidence 44444444322110 0 0000000 00000 01123566677765555667777666542222 1 222
Q ss_pred hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 014883 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (416)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~ 320 (416)
. +.+ ++..+..+ . .+. .| +.||+||++.|+++|++.++++|++|+++++|++|.++ +|+.++|++.
T Consensus 198 ~--~~~---a~~~~~~~---~-~~~--~G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~ 263 (487)
T COG1233 198 S--TPP---ALYLLLSH---L-GLS--GG-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS 263 (487)
T ss_pred C--chh---HHHHHHHH---h-ccc--CC-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence 0 111 22222221 1 122 12 67999999999999999999999999999999999998 7776788877
Q ss_pred CCcEEEcCEEEECCCC
Q 014883 321 SGQDILSHKLVLDPSF 336 (416)
Q Consensus 321 ~G~~i~Ad~VI~~p~~ 336 (416)
+|+.++||.||++...
T Consensus 264 ~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 264 DGENIEADAVVSNADP 279 (487)
T ss_pred ccceeccceeEecCch
Confidence 7778999999966443
No 8
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.96 E-value=7.8e-27 Score=236.73 Aligned_cols=331 Identities=12% Similarity=0.058 Sum_probs=188.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (416)
.||||||||++||+||++|+++|++|+|||+++++||++++++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~----------------------------------- 46 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR----------------------------------- 46 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence 599999999999999999999999999999999999999998764
Q ss_pred CCCCceEeeCCCCeEEee---CchHHHHHHhcCccccccccccccee-eeccCC-ceeecCCChhhhhhc-CCCChHHHH
Q 014883 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN 176 (416)
Q Consensus 103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g-~~~~~p~~~~~~~~~-~~l~~~~k~ 176 (416)
+|.+|. |++++.. .+.+-+++.++|+... .+...++.+ ++..|| ..+.++.+....... ....+.+.+
T Consensus 47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~ 120 (492)
T TIGR02733 47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER 120 (492)
T ss_pred ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence 356888 4888743 3345566778887532 233344433 233466 345555554322110 001122221
Q ss_pred HHHH---HHHHHHhhcCCC-------ccc--------cccccccccccCCcHHHHHHhc--CCChhHHHHHHHHHHhccC
Q 014883 177 QLMR---FFKLVQGHLSLD-------ESE--------ENNVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY 236 (416)
Q Consensus 177 ~l~~---~~~~~~~~~~~~-------~~~--------~~~~~~~~~~~~~t~~~~l~~~--~~~~~~~~~~~~~~~~~~~ 236 (416)
.+.. ............ .+. .........+...|+.+|++++ ..++.++.++........
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~- 199 (492)
T TIGR02733 121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYS- 199 (492)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhc-
Confidence 1111 111100000000 000 0000001123458999999986 467788887754322111
Q ss_pred CchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE
Q 014883 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (416)
Q Consensus 237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (416)
...+ .+.++..++. ++ .+.... .| .++++||+++|+++|++.+++.|++|+++++|++|.++ ++++.+
T Consensus 200 ~~~~--~~~~~~~~~~----~~-~~~~~~--~G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 267 (492)
T TIGR02733 200 QEDA--DETAALYGAT----VL-QMAQAP--HG-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW 267 (492)
T ss_pred cCCh--hhhhHHHHHH----Hh-hccccC--CC-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence 1111 1222221110 11 111111 12 46899999999999999999999999999999999987 666667
Q ss_pred EEeCCC-----cEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcc-eEEEEEEEecCCCCC-C-CCceEEEe
Q 014883 317 VRLASG-----QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP-D-LSNFLVIF 387 (416)
Q Consensus 317 V~l~~G-----~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~k~i~i~~~p~~~-~-~~~~~~~~ 387 (416)
|++.+| +++.||+||++ |...+..+.. ++.+++.+....++..+. ......+.++++..+ + .....+.+
T Consensus 268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~--~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~ 345 (492)
T TIGR02733 268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELLG--PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS 345 (492)
T ss_pred EEEecCCCCceEEEECCEEEECCCHHHHHHhcC--cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeecc
Confidence 776665 57999999965 3333344432 234443322222222332 233455666763221 1 12333333
Q ss_pred CCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (416)
Q Consensus 388 pp~~~~~~~~~~v~~~~~~~~~~~~p~G~ 416 (416)
.+ ...++|...+.+.+.+|+|+
T Consensus 346 ~~-------~~~~~v~~~~~d~~~aP~G~ 367 (492)
T TIGR02733 346 DH-------QGSLFVSISQEGDGRAPQGE 367 (492)
T ss_pred CC-------CceEEEEeCCccccCCCCCc
Confidence 32 12688877777778899885
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.95 E-value=7.2e-26 Score=228.19 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=185.9
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (416)
+.||||||||++||+||+.|+++ |++|+|||+++++||+++|++.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------ 51 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------ 51 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence 36999999999999999999999 99999999999999999997643
Q ss_pred cccccCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHH
Q 014883 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (416)
Q Consensus 98 ~~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~ 176 (416)
+|.+|+ |++++...+ .+.+++.++|+.+++.+......+++..+|+.+++|.+..+.++...+++.++.
T Consensus 52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 121 (462)
T TIGR00562 52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL 121 (462)
T ss_pred ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence 355788 588886555 588999999998776543333344443238888888776666655555554444
Q ss_pred HHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHH
Q 014883 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (416)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 256 (416)
.+. +.. .... ....+.|+.+|+++..-.+....++. .+....+..++ +++|+..++..+..
T Consensus 122 ~~~--~~~---~~~~-----------~~~~d~s~~e~l~~~~g~~~~~~~~~-p~~~~~~~~~~--~~ls~~~~~~~~~~ 182 (462)
T TIGR00562 122 RAG--MDF---IRPA-----------SPGKDESVEEFVRRRFGDEVVENLIE-PLLSGIYAGDP--SKLSLKSTFPKFYQ 182 (462)
T ss_pred Hhh--hhh---ccCC-----------CCCCCcCHHHHHHHhcCHHHHHHHHH-HHhcccccCCH--HHhhHHHHhHHHHH
Confidence 322 111 1000 01235899999986533333333332 22222233333 35676655443321
Q ss_pred HH-------hhh------------ccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE
Q 014883 257 YN-------SSI------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (416)
Q Consensus 257 ~~-------~s~------------~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (416)
.. .++ ..+....+. +.+++||+++|+++|++.+. .++|++|++|++|..+ ++. +.
T Consensus 183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~ 257 (462)
T TIGR00562 183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT 257 (462)
T ss_pred HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence 11 010 001111122 67799999999999976543 2789999999999876 333 56
Q ss_pred EEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883 317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (416)
Q Consensus 317 V~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~ 376 (416)
|++++|+++.||+||++ |...+..+. ++++....+...+..+..+.++.+.|++|+
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~ll----~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~ 314 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAGLL----SELSNSASSHLDKIHSPPVANVNLGFPEGS 314 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHHHh----cccCHHHHHHHhcCCCCceEEEEEEEchHH
Confidence 77778889999999964 544434432 233343444445567888999999998874
No 10
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=3.6e-26 Score=231.68 Aligned_cols=335 Identities=15% Similarity=0.156 Sum_probs=198.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (416)
|||||||||++||+||++|+++|++|+||||++.+||++++++.+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G---------------------------------- 46 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG---------------------------------- 46 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence 6999999999999999999999999999999999999999987654
Q ss_pred CCCCceEeeCCCCeEEe------eCchHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhhc-CCCChHH
Q 014883 103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME 174 (416)
Q Consensus 103 ~~~~~~~~dl~Gp~~~~------~~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~ 174 (416)
|.+|. |++++. ....+.+.+..++. .+++...+..+ +...+|..+.++.+....... ....+.+
T Consensus 47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~ 118 (493)
T TIGR02730 47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE 118 (493)
T ss_pred -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence 44555 355432 12234445544442 23343333222 222356666777665433221 1224667
Q ss_pred HHHHHHHHHHHHhhcC----------CCccc-cc-ccc------ccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccC
Q 014883 175 KNQLMRFFKLVQGHLS----------LDESE-EN-NVR------ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236 (416)
Q Consensus 175 k~~l~~~~~~~~~~~~----------~~~~~-~~-~~~------~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (416)
...+.+|++.++.... ..+.. .. ... ....+...++.++++++..++.+++++.........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~ 198 (493)
T TIGR02730 119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence 6777777665433211 00000 00 000 011233578999999999999999977632122111
Q ss_pred CchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE
Q 014883 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (416)
Q Consensus 237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (416)
... ++.+. +..+..+. ...++ ...+|.||++.|+++|.+.++++|++|+++++|++|..+ ++++++
T Consensus 199 ~p~---~~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 264 (493)
T TIGR02730 199 VPA---DQTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAVG 264 (493)
T ss_pred CCc---ccchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEEE
Confidence 110 11222 12122111 11122 267999999999999999999999999999999999987 678889
Q ss_pred EEeCCCcEEEcCEEEEC--CCCCCCCCCCC--chhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCc-eEEEeCCCC
Q 014883 317 VRLASGQDILSHKLVLD--PSFTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSN-FLVIFPPRS 391 (416)
Q Consensus 317 V~l~~G~~i~Ad~VI~~--p~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~-~~~~~pp~~ 391 (416)
|++.+|+++.||+||++ +..++..|... .++.++..++.+. ...+.....+.+++++.+.... ..++++.-.
T Consensus 265 v~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~---~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~ 341 (493)
T TIGR02730 265 VKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYV---KSPSFLSLHLGVKADVLPPGTECHHILLEDWT 341 (493)
T ss_pred EEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhcc---CCCceEEEEEEecCccCCCCCCccEEecchhh
Confidence 99989999999999965 43444444321 1122222222221 2234555666677765432211 123334211
Q ss_pred CCCCCCCeEEEEEec-CCCccCCCCC
Q 014883 392 LFPEQVTSIRVLQLG-GNLAVCPLGM 416 (416)
Q Consensus 392 ~~~~~~~~v~~~~~~-~~~~~~p~G~ 416 (416)
......+.++|...+ .|.+.+|+|+
T Consensus 342 ~~~~~~~~~~v~~ps~~dps~aP~G~ 367 (493)
T TIGR02730 342 NLEKPQGTIFVSIPTLLDPSLAPEGH 367 (493)
T ss_pred ccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence 112234678887755 3578889885
No 11
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.94 E-value=1.3e-25 Score=226.24 Aligned_cols=284 Identities=13% Similarity=0.180 Sum_probs=179.2
Q ss_pred ccEEEECCChhHHHHHHHHhhC------CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccc
Q 014883 23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY 96 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~------G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (416)
.+|||||||++||+||+.|+++ |++|+|||+++|+||+++|.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~----------------------------- 52 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK----------------------------- 52 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence 3799999999999999999996 48999999999999999998643
Q ss_pred ccccccCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCC--------hhhhhhc
Q 014883 97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD 167 (416)
Q Consensus 97 ~~~~~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~ 167 (416)
+|.+|+ |+++++.. ..+.+++.++|+++++.+......+++. +|...++|.+ ..+.++.
T Consensus 53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~ 120 (463)
T PRK12416 53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS 120 (463)
T ss_pred ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence 245788 48887543 4678899999998776555443445553 5666666542 2222322
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhch
Q 014883 168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (416)
Q Consensus 168 ~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 247 (416)
..++...|.. .+.+.... . ...+.+.|+.+|+++..-++..+.++.. +...-+..++ .++|+
T Consensus 121 ~~~~~~~~~~------~~~~~~~~------~---~~~~~~~sv~~~l~~~~~~~~~~~~~~p-~~~~~~~~~~--~~ls~ 182 (463)
T PRK12416 121 TLVSTKGKIV------ALKDFITK------N---KEFTKDTSLALFLESFLGKELVERQIAP-VLSGVYSGKL--NELTM 182 (463)
T ss_pred CcCCHHHHHH------hhhhhccC------C---CCCCCCCCHHHHHHHhcCHHHHHHHHHH-HhcccccCCc--ccccH
Confidence 3333222221 11111100 0 0123578999999975333333333332 1222233333 34666
Q ss_pred hhHHHHHHHHHhhhccc------------cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEE
Q 014883 248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (416)
Q Consensus 248 ~~~~~~~~~~~~s~~~~------------g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~ 315 (416)
...+..+..+....+.. ......+.+++||+++|+++|++.+.. ++|++|++|++|..+ +++ +
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~ 257 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y 257 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence 54444444433222110 011122778999999999999876533 689999999999986 444 5
Q ss_pred EEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883 316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (416)
Q Consensus 316 gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~ 376 (416)
.|++.+|+++.||+||++ |...+..+. .+|+++....++ .+..+.++.+.|++++
T Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~ 313 (463)
T PRK12416 258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILD 313 (463)
T ss_pred EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhh
Confidence 777778888999999954 544445553 346666654444 3457888889999764
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.94 E-value=7.8e-25 Score=222.54 Aligned_cols=291 Identities=17% Similarity=0.170 Sum_probs=184.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (416)
..++||||||||++||+||++|+++ |++|+|||+++++||+++|++.+|
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g------------------------------ 59 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG------------------------------ 59 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC------------------------------
Confidence 4457999999999999999999999 999999999999999999986532
Q ss_pred ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccc-cceeeeccCCceeecCCChhhhhhcCCCChHHHHH
Q 014883 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (416)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~ 177 (416)
|.+|. ||+++...++.+..+.+.|+.+++.|... ...+++. +|+.+++|.+..+.+....++..+|..
T Consensus 60 ---------~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~ 128 (496)
T PLN02576 60 ---------FIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIR 128 (496)
T ss_pred ---------eEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHH
Confidence 45777 58888766666666666688877666432 2345443 788898988766666656666665554
Q ss_pred HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHH
Q 014883 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (416)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 257 (416)
+.... . .+... .....+.|+.+|+++. +.+.+.+.+...+....+..++ .++|+..++..+..+
T Consensus 129 ~~~~~--~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~ 192 (496)
T PLN02576 129 AGLGA--F-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNL 192 (496)
T ss_pred HhHHH--h-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHH
Confidence 32111 1 01000 0113468999999975 4555554443332223344443 457776655443322
Q ss_pred Hhhhcc--------c----------------c-CCCccEEeecCCcchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCC
Q 014883 258 NSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS 311 (416)
Q Consensus 258 ~~s~~~--------~----------------g-~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~ 311 (416)
....+. . . .......+++||+++|+++|++ .++ ++|++|++|++|..+ +
T Consensus 193 e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~---~l~~~~i~l~~~V~~I~~~--~ 267 (496)
T PLN02576 193 EKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAK---RLGKDKVKLNWKVLSLSKN--D 267 (496)
T ss_pred HHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHH---hhCcCcEEcCCEEEEEEEC--C
Confidence 110000 0 0 0112256789999999998875 446 789999999999986 3
Q ss_pred CcEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883 312 GSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (416)
Q Consensus 312 g~~~gV~l--~~G~-~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~ 376 (416)
+..+.|++ .+|+ ++.||+||++ |...+..+..+..+ ...+.+ ....+..+.++.+.|++++
T Consensus 268 ~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~---~~~~~l-~~~~~~~~~~v~l~~~~~~ 332 (496)
T PLN02576 268 DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSP---AAADAL-PEFYYPPVAAVTTSYPKEA 332 (496)
T ss_pred CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCH---HHHHHh-ccCCCCceEEEEEEEchHH
Confidence 32133433 3453 6999999964 55444554322222 222223 3446777888888898864
No 13
>PRK07233 hypothetical protein; Provisional
Probab=99.94 E-value=4e-25 Score=220.94 Aligned_cols=288 Identities=15% Similarity=0.155 Sum_probs=178.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (416)
+|||||||++||+||+.|+++|++|+|||+++++||+++++..+|
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g----------------------------------- 45 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG----------------------------------- 45 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence 589999999999999999999999999999999999999987643
Q ss_pred CCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHHHH
Q 014883 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF 182 (416)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~ 182 (416)
|.+|. |.++++. ...+.+++.++|+.....+......+.+ +|+.++++. ....++...+++.++..+....
T Consensus 46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (434)
T PRK07233 46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT 117 (434)
T ss_pred ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence 22444 2454433 3478889999998765555443333332 555554432 2234444455555555432222
Q ss_pred HHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhc
Q 014883 183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~ 262 (416)
...... ....++...|+.+|+++...++..+.++... ....+..++ +++|+..++..+..+...
T Consensus 118 ~~~~~~-----------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~s~~~~~~~~~~~~~~-- 181 (434)
T PRK07233 118 LLARRI-----------KDWRALDKVPAEEWLRRWSGEGVYEVFWEPL-LESKFGDYA--DDVSAAWLWSRIKRRGNR-- 181 (434)
T ss_pred Hhhhhc-----------ccccccccccHHHHHHHhcCHHHHHHHHHHH-HhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence 111100 0022445689999999865544444544322 111122222 356765544433322110
Q ss_pred cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 014883 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (416)
Q Consensus 263 ~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l 341 (416)
........+.+|+||++.|+++|++.++..|++|++|++|++|..+ +++++.+. .++++++||+||++ |...+.++
T Consensus 182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 0100011267899999999999999999999999999999999986 56555555 57789999999954 44444554
Q ss_pred CCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (416)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~ 377 (416)
.. +++.......+...+..+.+..+-+++|+.
T Consensus 259 l~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (434)
T PRK07233 259 VP----DLPADVLARLRRIDYQGVVCMVLKLRRPLT 290 (434)
T ss_pred cC----CCcHHHHhhhcccCccceEEEEEEecCCCC
Confidence 32 222222222233445567777777888753
No 14
>PRK07208 hypothetical protein; Provisional
Probab=99.94 E-value=2.5e-24 Score=217.87 Aligned_cols=292 Identities=14% Similarity=0.171 Sum_probs=177.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (416)
||...||||||||++||+||+.|+++|++|+|+|+++++||++.|.+.+|
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------ 50 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------ 50 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence 46678999999999999999999999999999999999999999976533
Q ss_pred ccccCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHH
Q 014883 99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (416)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~ 177 (416)
+.+|. |+++++..+ .+.+++.+++..+....... ..+++. +|+...+|.+..+.+. .+++.++..
T Consensus 51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~ 116 (479)
T PRK07208 51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK 116 (479)
T ss_pred ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence 34677 488775544 67888888876332222211 222332 6788778765333332 233333222
Q ss_pred HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHHhccCCchhhhhhhchhhHHHHH--
Q 014883 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGINRL-- 254 (416)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~-- 254 (416)
+. ...+.... .....+.|+.+|+++..-.+..+.++. +.... |..++ +++|+.+++.++
T Consensus 117 ~~--~~~~~~~~------------~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~~ 178 (479)
T PRK07208 117 CG--ASYLKARL------------RPRKEEDSFEDWVINRFGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIKG 178 (479)
T ss_pred HH--HHHHHHhc------------CCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCcccC
Confidence 11 11111110 011246899999996433333333333 22222 33333 357766543221
Q ss_pred -------HHHHhhh-c-------cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe
Q 014883 255 -------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319 (416)
Q Consensus 255 -------~~~~~s~-~-------~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l 319 (416)
...+... + ..+.....+.+|+||+++|+++|++.++..|++|++|++|++|.++. ++.++.|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~ 257 (479)
T PRK07208 179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV 257 (479)
T ss_pred CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence 1111110 0 00100123779999999999999999999999999999999999872 443444443
Q ss_pred --CCCc--EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883 320 --ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (416)
Q Consensus 320 --~~G~--~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~ 376 (416)
.+|+ ++.||+||++ |...+.++. .++++.......++..+..++++.+.++++.
T Consensus 258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~ 316 (479)
T PRK07208 258 NDTDGTEETVTADQVISSMPLRELVAAL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELN 316 (479)
T ss_pred EcCCCCEEEEEcCEEEECCCHHHHHHhc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCC
Confidence 2353 5899999965 433223332 1334444444444556677888888888874
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.94 E-value=1.3e-24 Score=218.27 Aligned_cols=295 Identities=14% Similarity=0.171 Sum_probs=176.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (416)
+|||||||++||+||+.|+++| ++|+|||+++++||+++|++..|
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g--------------------------------- 48 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--------------------------------- 48 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence 7999999999999999999988 99999999999999999986543
Q ss_pred cCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCCh--------hhhhhcCCCCh
Q 014883 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL 172 (416)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~l~~ 172 (416)
+.+|+ |+++++..+ .+.+++.++|+..+..+......+++. +|+.+.+|... ...+..+.++.
T Consensus 49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T PRK11883 49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP 120 (451)
T ss_pred ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence 34677 466554333 578889999987654433212224443 67777766421 00000111111
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (416)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 252 (416)
.++.+. ...... .......++|+.+|+++. .++...+.+...+....+..++ .++|+...+.
T Consensus 121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 182 (451)
T PRK11883 121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP 182 (451)
T ss_pred HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence 111110 001100 001234578999999864 4444443333222222233333 3466655444
Q ss_pred HHHHHHhhhc-----------ccc-CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 014883 253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (416)
Q Consensus 253 ~~~~~~~s~~-----------~~g-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~ 320 (416)
.+..+....+ ... .....+.+++||++.|+++|++.+... +|++|++|++|..+ ++. +.|++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~ 257 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS 257 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence 3333322111 000 001226689999999999987654322 89999999999876 443 567778
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCceEEEeC
Q 014883 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFP 388 (416)
Q Consensus 321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~p 388 (416)
+|+++.||+||++ |...+.++.. ++++.. ..++..++.+.++.+.+++|+...+...-+.++
T Consensus 258 ~g~~~~~d~vI~a~p~~~~~~l~~--~~~~~~----~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 320 (451)
T PRK11883 258 NGGEIEADAVIVAVPHPVLPSLFV--APPAFA----LFKTIPSTSVATVALAFPESATNLPDGTGFLVA 320 (451)
T ss_pred CCCEEEcCEEEECCCHHHHHHhcc--ChhHHH----HHhCCCCCceEEEEEEeccccCCCCCceEEEec
Confidence 8999999999954 4444455422 233322 223456788999999999997333333333344
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.93 E-value=5.3e-24 Score=213.97 Aligned_cols=295 Identities=17% Similarity=0.169 Sum_probs=183.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (416)
+|+|||||++||+||++|+++|++|+|||+++++||+++|++..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------ 44 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------ 44 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence 58999999999999999999999999999999999999987421
Q ss_pred CCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeee-ccCCcee--ecC---CCh---hhhhh-cCCCCh
Q 014883 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL 172 (416)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~-~~~g~~~--~~p---~~~---~~~~~-~~~l~~ 172 (416)
.++.+|. |++++.. ...+.+++.++|+.+.+.|......+.. ..++... .+| ... .++++ ...+++
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (453)
T TIGR02731 45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW 121 (453)
T ss_pred --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence 1234677 4777644 3478889999999877666543332221 1122222 112 111 11121 123445
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (416)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 252 (416)
.++.++..-+... .... .+...++.+.|+.+|+++.+.++.+.+.+...+....+..++ .++|+..++.
T Consensus 122 ~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p--~~~S~~~~~~ 190 (453)
T TIGR02731 122 PEKIKFAIGLLPA--IVRG-------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINP--DELSMTVVLT 190 (453)
T ss_pred HHHHHHHHHhHHH--HhcC-------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHH
Confidence 5554433211110 0000 011234568999999999999988776433221111122333 3577777666
Q ss_pred HHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-----EEE
Q 014883 253 RLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DIL 326 (416)
Q Consensus 253 ~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~-----~i~ 326 (416)
.+..++. ..++. ...+..|| ++.++++|.+.++..|++|++|++|++|.++ +++++++|++.+|+ ++.
T Consensus 191 ~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~~~~ 264 (453)
T TIGR02731 191 ALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRFEVT 264 (453)
T ss_pred HHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCceeEEE
Confidence 5555442 12221 13345554 5789999999998999999999999999875 26777788887665 799
Q ss_pred cCEEEEC-CCCCCCCCCCCchhhhh--hhhhhccccCCcceEEEEEEEecCCCCC
Q 014883 327 SHKLVLD-PSFTVPGSLASSHQQLQ--ESFQAFSLSDNKGKVARGICITRSSLKP 378 (416)
Q Consensus 327 Ad~VI~~-p~~~~~~l~~~~~~~l~--~~~~~~~~~~~~~~~~k~i~i~~~p~~~ 378 (416)
||.||++ |...+.+++. ..++ ...+.+. ....+.+.++.+.|++|+..
T Consensus 265 a~~VI~a~p~~~~~~lL~---~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~ 315 (453)
T TIGR02731 265 ADAYVSAMPVDIFKLLLP---QPWKQMPFFQKLN-GLEGVPVINVHIWFDRKLTT 315 (453)
T ss_pred CCEEEEcCCHHHHHhhCc---hhhhcCHHHHHhh-cCCCCcEEEEEEEEccccCC
Confidence 9999954 4444455431 1111 1222232 23466899999999999864
No 17
>PLN02612 phytoene desaturase
Probab=99.93 E-value=6.8e-24 Score=217.21 Aligned_cols=295 Identities=14% Similarity=0.139 Sum_probs=186.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (416)
..||+|||+|++||+||++|+++|++|+|+|+++++||++.+++..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~---------------------------------- 138 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE---------------------------------- 138 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence 4689999999999999999999999999999999999999997631
Q ss_pred cCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeecc-CCcee--ec----CCC---hhhhhh-cCC
Q 014883 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDA-DAKLC--SV----PDS---RAAIFK-DKS 169 (416)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~-~g~~~--~~----p~~---~~~~~~-~~~ 169 (416)
.++.+|. |++++... ..+.+++.++|+.+.++|......+.+.. ++... .+ |.. ..++++ ...
T Consensus 139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ 213 (567)
T PLN02612 139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM 213 (567)
T ss_pred ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence 1234677 47877543 36888999999988777765443332211 12222 11 221 112221 223
Q ss_pred CChHHHHHHHH-HHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHHHHHhccCCchhhhhhhch
Q 014883 170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLYAIAMADYDQEVSEYVLKT 247 (416)
Q Consensus 170 l~~~~k~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~ 247 (416)
+++.++.++.. ++... .. ......++.+.|+.+|+++++.++.+.+ ++... ...-+..++ +++|+
T Consensus 214 ls~~~kl~~~~~~~~~~---~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l-~~~~~~~~p--~~~S~ 280 (567)
T PLN02612 214 LTWPEKIKFAIGLLPAI---VG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAM-SKALNFINP--DELSM 280 (567)
T ss_pred CCHHHHHHHHHhhhHHh---cc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHH-HHHhcCCCH--HHhhH
Confidence 34444433221 11000 00 0011234567899999999999987775 33322 111122232 35677
Q ss_pred hhHHHHHHHHHhhhccccCCCccEEeecCCc-chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 014883 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (416)
Q Consensus 248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~ 326 (416)
...+..+..++. ...+ ....++.|+. ..|+++|++.++.+|++|++|++|++|..+ +++++++|++.+|+++.
T Consensus 281 ~~~l~~l~~~l~--~~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~v~~~~G~~~~ 354 (567)
T PLN02612 281 QCILIALNRFLQ--EKHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELN-DDGTVKHFLLTNGSVVE 354 (567)
T ss_pred HHHHHHHHHHHh--ccCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEEC-CCCcEEEEEECCCcEEE
Confidence 665555444432 1222 1255666664 689999999888899999999999999986 36767788888999999
Q ss_pred cCEEEEC-CCCCCCCCCCCch--hhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883 327 SHKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (416)
Q Consensus 327 Ad~VI~~-p~~~~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~ 378 (416)
||+||++ |...+..+..... .+++...+. .....++++.+.|++|+..
T Consensus 355 ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~----l~~~~v~~v~l~~dr~~~~ 405 (567)
T PLN02612 355 GDVYVSATPVDILKLLLPDQWKEIPYFKKLDK----LVGVPVINVHIWFDRKLKN 405 (567)
T ss_pred CCEEEECCCHHHHHHhCcchhcCcHHHHHHHh----cCCCCeEEEEEEECcccCC
Confidence 9999965 5444444432111 233333322 2356789999999999854
No 18
>PLN02268 probable polyamine oxidase
Probab=99.92 E-value=1.5e-23 Score=209.70 Aligned_cols=279 Identities=13% Similarity=0.144 Sum_probs=167.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (416)
+|||||||++||+||+.|+++|++|+||||++|+|||++|.+..|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g----------------------------------- 46 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFG----------------------------------- 46 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCC-----------------------------------
Confidence 799999999999999999999999999999999999999965322
Q ss_pred CCCceEeeCCCCeEEee---CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHH
Q 014883 104 HPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (416)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~ 180 (416)
+.+|+ |++|+.. +.++.+++.++|++.+... .+..+++..+...+.+... . ...++......+..
T Consensus 47 ----~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 114 (435)
T PLN02268 47 ----FPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDM--D---GNQVPQELVTKVGE 114 (435)
T ss_pred ----cccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecC--C---CCCCCHHHHHHHHH
Confidence 34788 5898853 3367888999998654321 1111222101010000000 0 00122221122222
Q ss_pred HHH-HHHhhcCCCccccccccccccccCCcHHHHHHhcCCC-------hhHHHHHHHHH-Hhc-cCCchhhhhhhchhhH
Q 014883 181 FFK-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP-------HKIKSIVLYAI-AMA-DYDQEVSEYVLKTRDG 250 (416)
Q Consensus 181 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~-~~~-~~~~~~~~~~~s~~~~ 250 (416)
.+. ........ . ...+.+.|+.+|++++... ...++++.+.+ .+. -+..++ .++|+...
T Consensus 115 ~~~~~~~~~~~~-~--------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls~~~~ 183 (435)
T PLN02268 115 TFERILEETEKV-R--------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTISLKSW 183 (435)
T ss_pred HHHHHHHHHHHH-H--------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCchhhc
Confidence 111 11111000 0 1124567899987654211 12333332211 111 122232 23443210
Q ss_pred HHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 014883 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330 (416)
Q Consensus 251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~V 330 (416)
.....+. |...++.+|++.|+++|++ +..|++|++|++|..+ ++. +.|++.+|+++.||+|
T Consensus 184 --------~~~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~V 244 (435)
T PLN02268 184 --------DQEELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFVADAA 244 (435)
T ss_pred --------CCccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEEcCEE
Confidence 0000011 1124678899999998854 5579999999999986 333 5677788889999999
Q ss_pred EEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC
Q 014883 331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (416)
Q Consensus 331 I~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~ 379 (416)
|+. |...+....+.+.|+||+.+....++..++.+.|.++.|++||-++
T Consensus 245 Iva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 245 IIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred EEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 954 6555444334577889988888878888999999999999996543
No 19
>PLN02676 polyamine oxidase
Probab=99.91 E-value=3.8e-23 Score=207.97 Aligned_cols=285 Identities=11% Similarity=0.074 Sum_probs=169.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (416)
...+||||||||++||+||+.|+++|. +|+|||+++++||++.+.+..|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g------------------------------ 73 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG------------------------------ 73 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC------------------------------
Confidence 346899999999999999999999998 6999999999999999875432
Q ss_pred ccccCCCCceEeeCCCCeEEee-----CchHHHHHHhcCcccccc-cccccceeeeccCCceeecCCChhhhhhcCCCCh
Q 014883 99 RLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL 172 (416)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~-----~~~~~~~l~~~g~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~ 172 (416)
+.+|+ |++|+.. ...+.+++.+.|+..+.. +... ...++..+|+.+ +. +.. .
T Consensus 74 ---------~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~------~ 131 (487)
T PLN02676 74 ---------VSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVV------Q 131 (487)
T ss_pred ---------eEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHH------H
Confidence 34677 4788742 446778888888876532 2221 222333345433 11 100 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHHhccCCchhhhhhhchhh
Q 014883 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (416)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 249 (416)
.-...+..+..++..+.... . ..++.+.++ .+++.+.. .....+. ..+......+..++ .++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~ 200 (487)
T PLN02676 132 KSMKVADASDEFGENLSISL---S-----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKN 200 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhh---c-----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhh
Confidence 00011111122211121100 0 112344555 33444322 1211111 11111111012221 2344322
Q ss_pred HHHHHHHHHhhhccccCCCccEEee--cCCcchHHHHHHHHHHh------cCcEEEcCCceeEEEEecCCCcEEEEEeCC
Q 014883 250 GINRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321 (416)
Q Consensus 250 ~~~~~~~~~~s~~~~g~~~~~~~~p--~gG~~~l~~al~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~ 321 (416)
. .. ...+...++.-.+. +||++.|+++|++.+.. .+.+|+||++|++|..+. ++ +.|++.+
T Consensus 201 ~-------~~-~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~-~g--V~V~~~~ 269 (487)
T PLN02676 201 T-------EP-NPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK-NG--VTVKTED 269 (487)
T ss_pred c-------Cc-ccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC-Cc--EEEEECC
Confidence 1 10 01111111112343 68999999999875422 236899999999999862 44 5788889
Q ss_pred CcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883 322 GQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (416)
Q Consensus 322 G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~ 378 (416)
|++++||+||++ |...+.+..+.++|+||+.+....++..++.+.|.++.|++||=+
T Consensus 270 G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~ 327 (487)
T PLN02676 270 GSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP 327 (487)
T ss_pred CCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence 999999999954 555545423578999999988888888999999999999999744
No 20
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.91 E-value=1.6e-22 Score=203.20 Aligned_cols=301 Identities=17% Similarity=0.154 Sum_probs=184.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (416)
+|+|||||++||+||..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------ 44 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------ 44 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence 58999999999999999999999999999999999999997421
Q ss_pred CCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceee--------cC-CChhhhhhcCCCChH
Q 014883 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--------VP-DSRAAIFKDKSLGLM 173 (416)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~--------~p-~~~~~~~~~~~l~~~ 173 (416)
.+|.+|. |+++++... .+.+++.++|+.+.+.+......+.. .+++... .| .....+++.+.++..
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~ 120 (474)
T TIGR02732 45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV 120 (474)
T ss_pred --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence 1345777 588875443 67888888998766554432222322 1333211 23 122356666778888
Q ss_pred HHHHHHHHHHH---HHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhH
Q 014883 174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (416)
Q Consensus 174 ~k~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 250 (416)
+|.++...... .+.+.. . ....+......+.|+.+|+++++.++.+.+.+...+....+..++ +++|+..+
T Consensus 121 dklr~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~ 194 (474)
T TIGR02732 121 DKLRNALALGTSPIVRGLVD--Y--DGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM 194 (474)
T ss_pred HHHHHHHHhhhhHHHhhccc--c--chhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 87765443311 111100 0 000011223456999999999998876444333332222223333 35777666
Q ss_pred HHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEcCCceeEEEEecC-CC--cEEEEEeCCC---c
Q 014883 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q 323 (416)
Q Consensus 251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~l~~G---~ 323 (416)
+..+..+. ....+ .-..+++||.++ +.+.+.+.+++.|++|+++++|++|+.+.. ++ ++++|++.+| +
T Consensus 195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~ 269 (474)
T TIGR02732 195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK 269 (474)
T ss_pred HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence 55444222 12322 126788999876 678799999999999999999999998621 12 3677777544 5
Q ss_pred EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883 324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (416)
Q Consensus 324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~ 377 (416)
++.||+||++ |.....+|..+. .+-+.....+.+ .....++-..+-|++|+.
T Consensus 270 ~~~aD~VVlA~p~~~~~~Ll~~~-~~~~~~~~~l~~-l~~~pi~~v~l~~~~~v~ 322 (474)
T TIGR02732 270 VIKADAYVAACDVPGIKRLLPQE-WRQFEEFDNIYK-LDAVPVATVQLRYDGWVT 322 (474)
T ss_pred EEECCEEEECCChHHHHhhCChh-hhcCHHHhhHhc-CCCCCeEEEEEEeccccc
Confidence 6899999954 544445553211 110112222322 233456666667787664
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.91 E-value=2.7e-22 Score=203.40 Aligned_cols=304 Identities=16% Similarity=0.167 Sum_probs=184.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (416)
...+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~--------------------------------- 120 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK--------------------------------- 120 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence 34699999999999999999999999999999999999999988421
Q ss_pred ccCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCcee----ecC--CC---hhhhhhcCCC
Q 014883 101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL 170 (416)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~----~~p--~~---~~~~~~~~~l 170 (416)
.++.+|. |+++++.. ..+.+++.++|+.+.+.+......+.. .+|... .+| .. ...+++.+.+
T Consensus 121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~-~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L 193 (569)
T PLN02487 121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVN-KGGDVGELDFRFPVGAPLHGIKAFLTTNQL 193 (569)
T ss_pred -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEEe-cCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence 1244676 48877543 368889999999776555432222322 244431 122 11 1244555677
Q ss_pred ChHHHHHHHHHH---HHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhch
Q 014883 171 GLMEKNQLMRFF---KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (416)
Q Consensus 171 ~~~~k~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 247 (416)
++.+|.++..-+ ..+.... .++ ...+......+.|+.+|+++++.++.+.+-++..++...+..++ +++|+
T Consensus 194 s~~dklr~~~~l~~~~~~~al~--~~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA 267 (569)
T PLN02487 194 EPYDKARNALALATSPVVRALV--DPD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA 267 (569)
T ss_pred CHHHHHhhcccccccchhhhcc--Ccc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence 777776642211 0011100 000 00111233456999999999988875444333333332233333 46777
Q ss_pred hhHHHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEcCCceeEEEEecC-CC--cEEEEEe---C
Q 014883 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A 320 (416)
Q Consensus 248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~l---~ 320 (416)
..++..+..+. ...-+ +-..|++||.++ |++.+++.++..|++|+++++|++|..+.+ ++ ++++|++ .
T Consensus 268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 76655543211 11111 226799999995 999999999999999999999999998721 22 3778887 3
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (416)
Q Consensus 321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~ 377 (416)
+++++.||.||++ |...+.+|.....+..+. ..++... ...-|+-+.+-|++|+.
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~-~~~l~~L-~~~pi~tv~L~~d~~v~ 398 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKRLLPEQWREYEF-FDNIYKL-VGVPVVTVQLRYNGWVT 398 (569)
T ss_pred CceEEECCEEEECCCHHHHHHhCCchhhccHH-HhHHhcC-CCeeEEEEEEEeccccc
Confidence 4557899999954 444445554222111111 2223221 12334444556787664
No 22
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.91 E-value=8.1e-24 Score=201.42 Aligned_cols=288 Identities=14% Similarity=0.078 Sum_probs=165.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (416)
+...||||||+|++||+||+.|.++||+|+|||+++|+|||+.+... + ..|.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~-~~~~-------------------------- 56 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-G-GEYT-------------------------- 56 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-c-ceee--------------------------
Confidence 56789999999999999999999999999999999999999999875 2 2332
Q ss_pred cccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHH-H
Q 014883 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ-L 178 (416)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~-l 178 (416)
|++|+-+.+.++.+..+..+.|+....-....+....+ .+.....|. ++. -.+.+.+. .
T Consensus 57 -----------d~gG~~i~p~~~~~l~~~k~~gv~~~~fi~~g~~~~~~--~~~~~~~p~----~~~---~~~~d~~~~~ 116 (450)
T COG1231 57 -----------DLGGQYINPTHDALLAYAKEFGVPLEPFIRDGDNVIGY--VGSSKSTPK----RSL---TAAADVRGLV 116 (450)
T ss_pred -----------ccCCcccCccchhhhhhHHhcCCCCCceeccCcccccc--cccccccch----hcc---chhhhhcchh
Confidence 33232222456677777777776543222211110000 111111111 110 00112222 1
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHH----HHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHH
Q 014883 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEF----LTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 254 (416)
..+...........+... ....+.+.+++.+| ++.+......+ + .....++ .+++....+..
T Consensus 117 ~~~~~~a~~~~~~~~~~t---~~~~e~~~~~~~~W~~~~~~~~~~~~~a~--~------~~g~~~~--~~~~~~~d~~~- 182 (450)
T COG1231 117 AELEAKARSAGELDPGLT---PEDRELDLESLAAWKTSSLRGLSRDPGAR--V------SPGPIEP--GDVSLLHDALP- 182 (450)
T ss_pred hhhhhhhhcccccCcccC---cchhhhhhHHHHhhhhccccccccCccce--e------ccCCCCc--ccccchhhhhh-
Confidence 112221111111111110 11234555777787 22221111111 0 0011111 11111110110
Q ss_pred HHHHhhhcccc--CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 255 ALYNSSIGRFQ--NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 255 ~~~~~s~~~~g--~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
......+.+.- ....+...+.|||+.|+++|+ .++|..|.++++|.+|.++. +| |.|+..+.+++.||.||+
T Consensus 183 ~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~ 256 (450)
T COG1231 183 LRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLV 256 (450)
T ss_pred hhhhhhccccccccccchhhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEE
Confidence 11111111111 111224466699999999996 47899999999999999972 44 678766657899999996
Q ss_pred C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (416)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~ 377 (416)
. |..++.. +.+.|++++.+.+.....+++...|..+.|++||=
T Consensus 257 tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFW 300 (450)
T COG1231 257 TIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFW 300 (450)
T ss_pred ecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhh
Confidence 5 5555455 46788899999999999999999999999999984
No 23
>PLN02529 lysine-specific histone demethylase 1
Probab=99.91 E-value=1.1e-22 Score=210.15 Aligned_cols=280 Identities=14% Similarity=0.104 Sum_probs=173.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (416)
...||+|||||++||+||..|+++|++|+|||+++++||+++|..+.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~-------------------------------- 206 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR-------------------------------- 206 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence 457999999999999999999999999999999999999999986531
Q ss_pred ccCCCCceEeeCCCCeEEeeCc--hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (416)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (416)
....+.+|+ |++|++... ++..+..++|+..+.. .. ...++..+|.......+ + ..+ ..+
T Consensus 207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~~~-~~--~~~~~~~~G~~v~~~~~--~--------~~~-~~~ 268 (738)
T PLN02529 207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLHKV-RD--NCPLYKPDGALVDKEID--S--------NIE-FIF 268 (738)
T ss_pred ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcccc-CC--CceEEeCCCcCcchhhh--h--------hHH-HHH
Confidence 001245888 589985432 4667777777654321 11 11133335543321110 0 000 011
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 252 (416)
.+++..+..+.... ...+.+.|+.+|++++. +++..++++.+.+....+.... .++. .
T Consensus 269 ~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~---~~s~----L 332 (738)
T PLN02529 269 NKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAG---CLSD----L 332 (738)
T ss_pred HHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCC---ChHH----h
Confidence 22222221111100 01245789999998643 5555566665433211111100 1111 1
Q ss_pred HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 253 ~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.+..+....+ +. ..|...++.||++.|+++|++ +..|+||++|++|..+. ++ +.|+ .+++++.||+||+
T Consensus 333 Sl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~~-dG--VtV~-t~~~~~~AD~VIV 401 (738)
T PLN02529 333 SAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYGN-DG--VEVI-AGSQVFQADMVLC 401 (738)
T ss_pred hhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEcC-Ce--EEEE-ECCEEEEcCEEEE
Confidence 1122221111 11 113367899999999999875 33599999999999862 33 4565 4567899999996
Q ss_pred C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (416)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~ 377 (416)
+ |...+.+..+.+.|+||+.+.+..++..++.+.|+++.|++||-
T Consensus 402 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW 447 (738)
T PLN02529 402 TVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW 447 (738)
T ss_pred CCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence 5 55554543456889999988888889999999999999999963
No 24
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.91 E-value=2.3e-22 Score=195.90 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=178.7
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (416)
.|+|||||++||+||++|+++| .+|+|||+.+++||...|+..+|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G--------------------------------- 48 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG--------------------------------- 48 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC---------------------------------
Confidence 5899999999999999999999 99999999999999999996654
Q ss_pred cCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHH
Q 014883 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (416)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~ 180 (416)
|.+|. ||+.++.+ ..+++++.++|+++.+.+......|++. +|+++++|... ++..+.+...+...+.+
T Consensus 49 ------~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~ 118 (444)
T COG1232 49 ------FLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR 118 (444)
T ss_pred ------EEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence 45777 47766554 5789999999999998887655556665 88999999763 44333322212222223
Q ss_pred HHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhh
Q 014883 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s 260 (416)
++....... . .....+.++.+|+++..-.+.+..++. .+.-.-|..+. +++|+...+..+..-.+.
T Consensus 119 ~~~~~~~~~---~--------~~~~~d~sv~~f~r~~fG~ev~~~~~~-pll~giy~~~~--~~LS~~~~~p~~~~~e~~ 184 (444)
T COG1232 119 ALQEFIRPK---S--------WEPKQDISVGEFIRRRFGEEVVERFIE-PLLEGIYAGDA--DKLSAAAAFPILARAERK 184 (444)
T ss_pred HHHhhhccc---C--------CCCCCCcCHHHHHHHHHhHHHHHHHHH-HHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence 222111100 0 123467899999986433322333332 11111122222 356765222211111111
Q ss_pred hccc-------cC-----CCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 014883 261 IGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH 328 (416)
Q Consensus 261 ~~~~-------g~-----~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad 328 (416)
.+.. +. ..+.+.+++||+++|+++|++.+... |+++++|++|..+. ++ +++.+.+|+.+.||
T Consensus 185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~--~~~~~~~g~~~~~D 258 (444)
T COG1232 185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AG--KTIVDVGGEKITAD 258 (444)
T ss_pred hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-Cc--cEEEEcCCceEEcc
Confidence 1110 00 01347889999999999998766554 99999999999861 33 45556789999999
Q ss_pred EEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCC
Q 014883 329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS 375 (416)
Q Consensus 329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p 375 (416)
.||++ |.+.++.++.+ .++. . ........+++.+++.++++
T Consensus 259 ~VI~t~p~~~l~~ll~~--~~~~---~-~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 259 GVISTAPLPELARLLGD--EAVS---K-AAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred eEEEcCCHHHHHHHcCC--cchh---h-hhhhccccceEEEEEEeccc
Confidence 99954 65555655432 1111 1 11223456788888888885
No 25
>PLN02568 polyamine oxidase
Probab=99.88 E-value=3.3e-21 Score=195.39 Aligned_cols=298 Identities=9% Similarity=0.042 Sum_probs=168.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-----CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI 93 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G-----~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (416)
++...||||||||++||+||+.|+++| ++|+|||+++++||+++|++..+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g------------------------- 56 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG------------------------- 56 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCC-------------------------
Confidence 456689999999999999999999988 99999999999999999986532
Q ss_pred cccccccccCCCCceEeeCCCCeEEee--CchHHHHHHhcCccccc-ccccccc----eeeeccCCceeecCCChhhhhh
Q 014883 94 SNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIFK 166 (416)
Q Consensus 94 ~~~~~~~~~~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~g~~~~~-~f~~~~~----~~~~~~~g~~~~~p~~~~~~~~ 166 (416)
|.+|+ |++++.. ...+.+++.++|+.... .|...+. ...+..+|... +. ++..
T Consensus 57 --------------~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~---~~~~ 116 (539)
T PLN02568 57 --------------ERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEV--DP---SIVE 116 (539)
T ss_pred --------------eEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcCC--CH---HHHH
Confidence 34777 4888753 45788889999885442 2322111 11222233211 10 0000
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCCccc---c--ccccccc----cccCCcHHHHHHhcCCChhHHHHHHHHHHhccCC
Q 014883 167 DKSLGLMEKNQLMRFFKLVQGHLSLDESE---E--NNVRISE----EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237 (416)
Q Consensus 167 ~~~l~~~~k~~l~~~~~~~~~~~~~~~~~---~--~~~~~~~----~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (416)
.-...+..++..+.....+.... . ....... .-.+.++.+|+++.. ...+..+..-. ....+.
T Consensus 117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-~~~~~~~~~p~-~~~~~~ 188 (539)
T PLN02568 117 ------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-DAYWDSVSADE-QIKGYG 188 (539)
T ss_pred ------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-HHHHhhcccch-hhcccc
Confidence 00011122222221110000000 0 0000000 012347888887411 00000000000 000000
Q ss_pred chhhhhhhchhhHHHHHHHHHh-----------hh---ccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCcee
Q 014883 238 QEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI 303 (416)
Q Consensus 238 ~~~~~~~~s~~~~~~~~~~~~~-----------s~---~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~ 303 (416)
.++ .+.+....+..+..+.. +. ..+...+|...++.||++.|.++|++.+ .+..|++|++|+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~ 264 (539)
T PLN02568 189 GWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRKVT 264 (539)
T ss_pred chh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEE
Confidence 000 00111111111111100 00 1111112346789999999999997643 356899999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC----CCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883 304 SLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS----LASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (416)
Q Consensus 304 ~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l----~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~ 376 (416)
+|..+ ++. +.|++.+|+++.||+||++ |...+..- .+.+.|+||+.+....++..+|.+.|.++.|++||
T Consensus 265 ~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 265 RIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred EEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 99986 333 5688789989999999964 55444431 13588999998888888889999999999999996
No 26
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.88 E-value=5.3e-21 Score=198.61 Aligned_cols=283 Identities=13% Similarity=0.115 Sum_probs=170.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (416)
...||+|||||++||+||+.|++.|++|+|+|+++++||++.+++..+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~------------------------------- 285 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD------------------------------- 285 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence 3579999999999999999999999999999999999999999876531
Q ss_pred ccCCCCceEeeCCCCeEEeeC--chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883 101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (416)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~--~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (416)
.-.+.+|+ |++|+... ..+..++.++|+..+. ...... ++..+|..+....+ + ..+ ..+
T Consensus 286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~~~--~~~~dG~~~~~~~~--~--------~v~-~~f 346 (808)
T PLN02328 286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDICP--LYLPDGKAVDAEID--S--------KIE-ASF 346 (808)
T ss_pred ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCCce--EEeCCCcCcchhhh--h--------hHH-HHH
Confidence 01234677 48888543 3566777888875431 111111 22235543321100 0 001 112
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 252 (416)
.+++..+..+.... .+ .....+.|+.+|++++ ..++..+.++.+.++..-+.... .++. +
T Consensus 347 ~~lL~~~~klr~~~---~~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs---~ls~---L- 412 (808)
T PLN02328 347 NKLLDRVCKLRQAM---IE----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS---LMSN---L- 412 (808)
T ss_pred HHHHHHHHHHHHhh---hh----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh---hHHH---H-
Confidence 23333221111000 00 0112457888888743 23444444444332211111100 0110 1
Q ss_pred HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 253 ~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.+..+.... .+ ...+...++.||++.|+++|++. ++ |++|++|++|..+. ++ +.|. .+|+++.||+||+
T Consensus 413 Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~---L~--I~ln~~V~~I~~~~-dg--V~V~-~~G~~~~AD~VIv 481 (808)
T PLN02328 413 SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKD---LP--IFYERTVESIRYGV-DG--VIVY-AGGQEFHGDMVLC 481 (808)
T ss_pred Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhh---CC--cccCCeeEEEEEcC-Ce--EEEE-eCCeEEEcCEEEE
Confidence 111111100 11 11133667899999999999763 33 99999999999862 33 4453 5788999999996
Q ss_pred C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (416)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~ 378 (416)
+ |...+.+..+.+.|+||+.+....++..++.+.|+++.|+++|=.
T Consensus 482 TvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~ 528 (808)
T PLN02328 482 TVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWG 528 (808)
T ss_pred CCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence 5 655555433567899999888888888999999999999999643
No 27
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.88 E-value=6.6e-21 Score=189.50 Aligned_cols=277 Identities=16% Similarity=0.155 Sum_probs=172.5
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccCCCCceEeeCCCC
Q 014883 36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP 115 (416)
Q Consensus 36 ~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~Gp 115 (416)
+||++|+++|++|+|||+++++||+++|++.++. .+.+|. |+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~ 42 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ 42 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence 4899999999999999999999999999876541 123677 48
Q ss_pred eEEeeC-chHHHHHHhcCcccccccccccceeeeccCCce--e-----ecCCC-hhhhhhcCCCChHHHHHHHHHHHHHH
Q 014883 116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL--C-----SVPDS-RAAIFKDKSLGLMEKNQLMRFFKLVQ 186 (416)
Q Consensus 116 ~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~--~-----~~p~~-~~~~~~~~~l~~~~k~~l~~~~~~~~ 186 (416)
++++.. ..+.+++.++|++....+.. ....++..++.. + +.|.. ...+.+.+.+++.++.++.+++..+.
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 887653 46788899999987765421 121222223332 1 11211 11223445677777777666554332
Q ss_pred hhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccC
Q 014883 187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN 266 (416)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~ 266 (416)
... ..++.+.|+.+|+++++.++.+.+.+...+....+..++ .++|+..++..+.. ++.....
T Consensus 122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~ 184 (419)
T TIGR03467 122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA 184 (419)
T ss_pred hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence 210 123567899999999888877776444322222233333 35676554433321 1111111
Q ss_pred CCccEEeecCCcchHH-HHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCC
Q 014883 267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS 344 (416)
Q Consensus 267 ~~~~~~~p~gG~~~l~-~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~ 344 (416)
...+.||+||++++. ++|++.+++.|++|++|++|++|..+ ++++..+...+|+++.||+||++ |...+..++..
T Consensus 185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~ 261 (419)
T TIGR03467 185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG 261 (419)
T ss_pred -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC
Confidence 112789999988776 55888888889999999999999987 44432222247888999999964 54444554321
Q ss_pred chhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (416)
Q Consensus 345 ~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~ 377 (416)
+.. .. ..+...++.+.+..+.+++|+.
T Consensus 262 --~~~---~~-~l~~~~~~~~~~v~l~~~~~~~ 288 (419)
T TIGR03467 262 --EDL---GA-LLTALGYSPITTVHLRLDRAVR 288 (419)
T ss_pred --chH---HH-HHhhcCCcceEEEEEEeCCCcC
Confidence 111 12 2234467788899999999983
No 28
>PLN03000 amine oxidase
Probab=99.87 E-value=1.9e-20 Score=194.45 Aligned_cols=281 Identities=13% Similarity=0.093 Sum_probs=164.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (416)
...||||||||++||+||..|++.|++|+|+|+++++||++.|.++.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~------------------------------- 231 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEAN------------------------------- 231 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCC-------------------------------
Confidence 4579999999999999999999999999999999999999999876430
Q ss_pred ccCCCCceEeeCCCCeEEeeCc--hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (416)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (416)
...+.+|+ |++|+.... .+..++.++|+..+ ......+.| ..+|+.. +.+.... ....+
T Consensus 232 ----~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~ly--~~~Gk~v--~~~~~~~---------ve~~f 292 (881)
T PLN03000 232 ----RVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCPLY--RVDGKPV--DPDVDLK---------VEVAF 292 (881)
T ss_pred ----CCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCeEE--EeCCcCC--chhhhhh---------HHHHH
Confidence 12356888 489885543 46666778887643 222222222 2356543 2110000 00111
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (416)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 252 (416)
..++..+..+..... ....+.++.++++. ....+..+.++.+.+....+.... .++. +.
T Consensus 293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as---~ls~---LS 357 (881)
T PLN03000 293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG---LVSK---LS 357 (881)
T ss_pred HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc---CHHH---HH
Confidence 122222111110000 00112344433321 122233333333221111111000 0110 00
Q ss_pred HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 253 ~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
+. +......+. ..+...+.+||++.|+++|++.+ .|+++++|++|..+ ++. +.|++ +++++.||+||+
T Consensus 358 -l~-~wdqd~~~e-~~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv 425 (881)
T PLN03000 358 -LA-FWDQDDPYD-MGGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC 425 (881)
T ss_pred -HH-Hhhhccccc-CCCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence 11 111100111 11335678999999999997643 39999999999986 332 45664 446899999996
Q ss_pred C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (416)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~ 378 (416)
+ |...+..-.+.+.|+||+.+....++..+|.+.|+++.|+++|=+
T Consensus 426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~ 472 (881)
T PLN03000 426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWS 472 (881)
T ss_pred cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence 5 665555333578999999998888999999999999999999643
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=2.5e-19 Score=178.80 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=85.0
Q ss_pred EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCCCchhhh
Q 014883 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQL 349 (416)
Q Consensus 271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~-~p~~~~~~l~~~~~~~l 349 (416)
.....+|+..+.++++. |..|+++..|.+|.... ++. +.|+..++..+.||+||+ .|-..+..-.+.+.|+|
T Consensus 211 ~~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L 283 (501)
T KOG0029|consen 211 HLLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL 283 (501)
T ss_pred hhHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC
Confidence 35678999999887754 99999999999999973 443 345556666699999984 35444444346799999
Q ss_pred hhhhhhccccCCcceEEEEEEEecCCCCCCCCceEEEeCC
Q 014883 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP 389 (416)
Q Consensus 350 ~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~pp 389 (416)
|..+....++-..|.+.|.++.|++.|=+.........++
T Consensus 284 p~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~ 323 (501)
T KOG0029|consen 284 PRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE 323 (501)
T ss_pred cHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence 9999999999999999999999999976433334444443
No 30
>PLN02976 amine oxidase
Probab=99.82 E-value=1e-18 Score=186.32 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=81.8
Q ss_pred ccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecC-------CCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 014883 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPG 340 (416)
Q Consensus 269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~ 340 (416)
|..++++||++.|+++|++.+ .|+||++|++|.+... ++.-+.|++.+|+++.||+||++ |...+..
T Consensus 926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976 926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence 345678999999999997632 4999999999988410 12225677889999999999965 5444442
Q ss_pred CCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883 341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (416)
Q Consensus 341 l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~ 378 (416)
-.+.|.|+||..+....++..+|.+.|.++.|++||=+
T Consensus 1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976 1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred cccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence 22468999999988888889999999999999999644
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.81 E-value=7.1e-20 Score=172.39 Aligned_cols=72 Identities=35% Similarity=0.415 Sum_probs=64.0
Q ss_pred ccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC--CCCCCCCCC
Q 014883 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD--PSFTVPGSL 342 (416)
Q Consensus 269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~--p~~~~~~l~ 342 (416)
|.+.||+|||++++.++++.++..|++|.+++.|++|..| +|+++||++.||++++++.||+| |-.++.+|+
T Consensus 254 g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 254 GGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred CcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 3478999999999999999999999999999999999998 89999999999999999999976 444555554
No 32
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.78 E-value=5.5e-17 Score=162.00 Aligned_cols=244 Identities=11% Similarity=0.157 Sum_probs=145.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI 93 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (416)
-..+..+|+|||||++||+||++|++. |++|+|||+++++||++.++....
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------------- 72 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------------- 72 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc-------------------------
Confidence 334457999999999999999999996 689999999999999998865321
Q ss_pred cccccccccCCCCceEeeCCCCeEEeeCchHHHHHHhc------C---ccccccccccccee---e-eccCCceeecCCC
Q 014883 94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF---M-LDADAKLCSVPDS 160 (416)
Q Consensus 94 ~~~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~------g---~~~~~~f~~~~~~~---~-~~~~g~~~~~p~~ 160 (416)
.+|.++. |+.+...-..+.+++.+. | .++|..+.+.++.+ . +..+|..+..+
T Consensus 73 ------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~-- 137 (576)
T PRK13977 73 ------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTD-- 137 (576)
T ss_pred ------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECc--
Confidence 2344444 354322222455555432 1 33556665555543 1 11133222211
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchh
Q 014883 161 RAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (416)
Q Consensus 161 ~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (416)
. -.++..++..|.+++- .. ..++.+.++.+|+++.........+. . .+..+.
T Consensus 138 ---~---~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~~w--~-t~FaF~--- 189 (576)
T PRK13977 138 ---K---FGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWYYW--R-TMFAFE--- 189 (576)
T ss_pred ---C---CCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHHHH--H-HHHCCc---
Confidence 0 1233333333433221 10 12456789999999755533222211 1 222222
Q ss_pred hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCC--CcEEEE
Q 014883 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKGV 317 (416)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~gV 317 (416)
+..|+......+.+|+.-+...... .++.+.+|- ...|.+.|.+.+++.|++|++|++|++|..+.++ +++++|
T Consensus 190 --~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI 266 (576)
T PRK13977 190 --KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI 266 (576)
T ss_pred --hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence 2467777666666665544444322 124444554 4689999999999999999999999999984113 678888
Q ss_pred EeC-CCc--E---EEcCEEEE
Q 014883 318 RLA-SGQ--D---ILSHKLVL 332 (416)
Q Consensus 318 ~l~-~G~--~---i~Ad~VI~ 332 (416)
.+. +|+ + ..+|.||+
T Consensus 267 ~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 267 HLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred EEEeCCceeEEEecCCCEEEE
Confidence 774 332 2 36788883
No 33
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=140.12 Aligned_cols=289 Identities=15% Similarity=0.114 Sum_probs=159.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (416)
..+|.|||+|++||+||+.|++. ++|+++|+++|+||+++|...+-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--------------------------------- 53 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--------------------------------- 53 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence 35899999999999999999987 99999999999999999985320
Q ss_pred cCCCCceEeeCCCCeEEeeC---chHHHHHHhcCcccccccccccceeeeccCCceeecCC--Chhhhhhc--CCCChHH
Q 014883 102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD--SRAAIFKD--KSLGLME 174 (416)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~---~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~l~~~~ 174 (416)
+...+.+|.+ .+++.. -.+.+++.+.|++....+-+..- .+ |+.-.++.+ ....++.. ..+.+
T Consensus 54 --d~~g~~vDtG--fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~--d~gglEy~g~tgl~~L~aqk~n~l~p-- 123 (447)
T COG2907 54 --DGGGVFVDTG--FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SL--DMGGLEYSGLTGLAGLLAQKRNLLRP-- 123 (447)
T ss_pred --cCCceeecce--eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Ee--cCCceeeccCCCccchhhccccccch--
Confidence 1112335542 333221 26888999999877655543211 11 222222221 11122221 11111
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH--HhccCCchhhhhhhchhhHHH
Q 014883 175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGIN 252 (416)
Q Consensus 175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~ 252 (416)
++.+++..+..+..+.....+ .....+.|+.+||++.+.+...++-+.+.+ +..+.+.. +++...+ .
T Consensus 124 --Rf~~mlaeiLrf~r~~~~~~d----~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa-~ 192 (447)
T COG2907 124 --RFPCMLAEILRFYRSDLAPSD----NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPA-C 192 (447)
T ss_pred --hHHHHHHHHHHHhhhhccchh----hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhH-H
Confidence 112222222111111000000 123456899999999999988776554432 22221111 2232222 2
Q ss_pred HHHHHHhhhccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883 253 RLALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (416)
Q Consensus 253 ~~~~~~~s~~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI 331 (416)
.+..|+...|...-.+-+ +..+.||+..-.+.| ++..+++|.++++|.+|.+-. +|+ .|...+|++-+.|+||
T Consensus 193 ~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~l---aa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vV 266 (447)
T COG2907 193 NFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRL---AADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVV 266 (447)
T ss_pred HHHHHHhccCceecCCCCceeEcccchHHHHHHH---hccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceee
Confidence 223333332221111123 445788998888855 467889999999999999863 663 3444679998999988
Q ss_pred --ECCCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883 332 --LDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (416)
Q Consensus 332 --~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~ 377 (416)
+.|+..+. |+. .+=|+.++.+ +. ...+-.++++-.+..+.
T Consensus 267 iAth~dqAl~-mL~---e~sp~e~qll-~a-~~Ys~n~aVlhtd~~lm 308 (447)
T COG2907 267 IATHPDQALA-LLD---EPSPEERQLL-GA-LRYSANTAVLHTDASLM 308 (447)
T ss_pred eecChHHHHH-hcC---CCCHHHHHHH-Hh-hhhhhceeEEeeccccc
Confidence 45776533 322 1223344422 22 12334455555565444
No 34
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.70 E-value=4.7e-17 Score=161.86 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=71.6
Q ss_pred cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhc
Q 014883 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF 356 (416)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~ 356 (416)
.+.+...++..+...|++|++|++|++|..+ +++ +.|.+.+|+++.||+||++ |...+.+ +.+.|++|......
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a 282 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGG-VTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA 282 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSE-EEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc--ccc-cccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence 3444444545566778899999999999998 555 4677899999999999965 5444343 24577788755555
Q ss_pred cccCCcceEEEEEEEecCCCCCCC
Q 014883 357 SLSDNKGKVARGICITRSSLKPDL 380 (416)
Q Consensus 357 ~~~~~~~~~~k~i~i~~~p~~~~~ 380 (416)
.+...+..+.+.++.+++++-+..
T Consensus 283 ~~~~~~~~~~~v~l~~~~~~~~~~ 306 (450)
T PF01593_consen 283 IENLPYSSVSKVFLGFDRPFWPPD 306 (450)
T ss_dssp HHTEEEEEEEEEEEEESSGGGGST
T ss_pred ccccccCcceeEEEeeeccccccc
Confidence 577778889999999999986543
No 35
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.70 E-value=8.2e-16 Score=146.91 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=81.5
Q ss_pred EeecCCcchHHHHHHHHHH----hcC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC-CCCC-CCC
Q 014883 272 IYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF-TVPG-SLA 343 (416)
Q Consensus 272 ~~p~gG~~~l~~al~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~-~~~~-l~~ 343 (416)
....-|..++.+-|.+.+. ++| ++++++++|.+|..+ +++. +.|++.||+.+.||+||++-+. .+.. -..
T Consensus 216 ~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~ 293 (498)
T KOG0685|consen 216 IWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHHK 293 (498)
T ss_pred eechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCc-EEEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence 3445566777666654322 233 566777999999987 3566 5788999999999999966332 1122 011
Q ss_pred CchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCceEEEe
Q 014883 344 SSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF 387 (416)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~ 387 (416)
-|.||||..+..-.++...|.+-|..+-|++||-+..-+.+..+
T Consensus 294 lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~l 337 (498)
T KOG0685|consen 294 LFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLL 337 (498)
T ss_pred hcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEE
Confidence 47899999999999999999999999999999877654433333
No 36
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.67 E-value=1.1e-14 Score=137.24 Aligned_cols=294 Identities=18% Similarity=0.187 Sum_probs=169.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEE--EccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~v--lE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (416)
..+|+|||||++||+||++|++.+-+|+| +|+.+|+||-.+|..-.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~-------------------------------- 58 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ-------------------------------- 58 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence 46999999999999999999999988755 99999999999993221
Q ss_pred cccCCCCceEeeCCCCeEEeeCc----hHHHHHHhcCccccccccccc-c----eeeeccCCceeecCCChhhhhhcCCC
Q 014883 100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLEFKSID-A----TFMLDADAKLCSVPDSRAAIFKDKSL 170 (416)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~----~~~~~l~~~g~~~~~~f~~~~-~----~~~~~~~g~~~~~p~~~~~~~~~~~l 170 (416)
..|-++. ||.-+...+ ...+++.++|+++-+.-...+ + .+++ +.|++..+|.+....... .+
T Consensus 59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~-~l 129 (491)
T KOG1276|consen 59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF-SL 129 (491)
T ss_pred ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc-cc
Confidence 1223444 355442222 478889999997654322222 1 3443 477888888765442211 22
Q ss_pred ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHHhccCCchhhhhhhchhh
Q 014883 171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (416)
Q Consensus 171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 249 (416)
.+.-|..+..|+........ .....+.++.+|.+| |+ +++.+.+..+++.+-|..|+ .++|++.
T Consensus 130 ~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk~ 194 (491)
T KOG1276|consen 130 QPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMKS 194 (491)
T ss_pred CcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHHH
Confidence 33344444444432211100 122356899999985 55 55666555554555566666 4688776
Q ss_pred HHHHHHHHHhhhcc---------cc--------------C--CCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeE
Q 014883 250 GINRLALYNSSIGR---------FQ--------------N--ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVIS 304 (416)
Q Consensus 250 ~~~~~~~~~~s~~~---------~g--------------~--~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~ 304 (416)
.+..+.......|. ++ . ..=+.+-.+||+..++++|++.+.+....|.++-++..
T Consensus 195 ~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~ 274 (491)
T KOG1276|consen 195 SFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSG 274 (491)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhccccccc
Confidence 66554432222210 00 0 00013467999999999999988888888999999988
Q ss_pred EEEecCCCcEEEEEeCCCcE-EEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCC
Q 014883 305 LLTDQNSGSYKGVRLASGQD-ILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS 375 (416)
Q Consensus 305 I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p 375 (416)
+.....++...+.+..++.. ...+++.++ |...+..+.. ++.+...+.....++-.|+-+.+-|.++
T Consensus 275 ~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~----~~~~sls~~L~ei~y~~V~vVn~~yp~~ 343 (491)
T KOG1276|consen 275 NSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLR----GLQNSLSNALSEIPYVPVAVVNTYYPKE 343 (491)
T ss_pred ccccccCCceeEeEcCCCceeeeccccccccchHHhhhhcc----ccchhhhhhhhcCCCCceEEEEEeccCc
Confidence 87653233233333334432 222332222 2222223222 2222222222334556666666667664
No 37
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.9e-14 Score=138.96 Aligned_cols=251 Identities=18% Similarity=0.152 Sum_probs=140.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (416)
.|+|+|||++||+||..|+++|++|+|+|+++++||++.+|.... +.|
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~------------------------------- 49 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNH------------------------------- 49 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCe-------------------------------
Confidence 699999999999999999999999999999999999999998643 111
Q ss_pred CCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeeec--cCCcee--ecCCC------hhhhhhcCCCCh
Q 014883 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL 172 (416)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~--~~g~~~--~~p~~------~~~~~~~~~l~~ 172 (416)
.+. |=++++. --.++.+|.+.+.+..+.+++....++-. ..|..- ..|.. ..+.++.+.+..
T Consensus 50 ------~E~-glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~ 122 (485)
T COG3349 50 ------VEH-GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR 122 (485)
T ss_pred ------eee-eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence 111 1222222 22577888888887666666544433211 112111 11111 112223333333
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHH-HHHH-HHHHhccCCchhhhhhhchhhH
Q 014883 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVL-YAIAMADYDQEVSEYVLKTRDG 250 (416)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~ 250 (416)
.+|..+ .-.+..... .......++++.++.+||++++...... +.+. .+.++.-...+ ..|+...
T Consensus 123 ~~~~~~---~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e----~~sa~~~ 189 (485)
T COG3349 123 REKIRF---VLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPE----GCSARFF 189 (485)
T ss_pred HHHhHH---hhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcc----cCcchhH
Confidence 444332 111000000 0012245677899999999877654433 3222 11122111222 3455443
Q ss_pred HHHHHHHHhhhccccCCCccEEeecCCcc-hHHHHHHHHHHhcCcEEEcCCceeEEEEec--CCCcEEEEEeCCCcEEEc
Q 014883 251 INRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDILS 327 (416)
Q Consensus 251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~-~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~l~~G~~i~A 327 (416)
+..+..++ +...+. .-....+|+.. .+.+.+.+.+.+.|.+++++.+|+.|..+. ++.+++++.+. +....+
T Consensus 190 lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~ 264 (485)
T COG3349 190 LTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ 264 (485)
T ss_pred HHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence 33322222 222111 11335677754 455777777888999999999999998752 24457787765 655555
Q ss_pred CEEE
Q 014883 328 HKLV 331 (416)
Q Consensus 328 d~VI 331 (416)
..++
T Consensus 265 ~~~~ 268 (485)
T COG3349 265 QAAL 268 (485)
T ss_pred eehh
Confidence 5544
No 38
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.43 E-value=1.8e-12 Score=125.45 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=40.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~ 65 (416)
+||+|||||++||++|..|++.|++|+|+|+++++||.|.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~ 44 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV 44 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec
Confidence 7999999999999999999999999999999999999887753
No 39
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.42 E-value=3.5e-13 Score=97.69 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=38.3
Q ss_pred EECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChh
Q 014883 27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA 67 (416)
Q Consensus 27 IIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~ 67 (416)
|||||++||+||++|+++|++|+|+|+++++||++.++..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence 89999999999999999999999999999999999998764
No 40
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.38 E-value=4.8e-12 Score=119.48 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=51.6
Q ss_pred EEeec-CCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.++|. ..++.|.++|.+.+++.|++|+++++|.+|..+ + ....|.+.+|++++||.+|+
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence 36787 789999999999999999999999999999986 3 33678888898999999883
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.33 E-value=3.2e-11 Score=116.95 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=52.0
Q ss_pred EEeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
+..+.+| ...+.++|.+.+++.|++|+.+++|++|..+ ++++.+|++.+|+ ++||+||+.
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence 5678888 7899999999999999999999999999998 7777789988887 999999954
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.26 E-value=3.7e-11 Score=117.86 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=47.7
Q ss_pred EEeecC-CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
..||.- -+..+.++|.+.++++|++|+++++|++|+.+ ++.+..|++.+++++.||+||+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence 467866 47899999999999999999999999999987 6666789876888999999994
No 43
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=2e-10 Score=105.03 Aligned_cols=100 Identities=20% Similarity=0.382 Sum_probs=70.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (416)
++|.+|||||++|+..|..|++.|++|+|+|||+.+||.|-+...+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~--------------------------------- 47 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ--------------------------------- 47 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC---------------------------------
Confidence 48999999999999999999999999999999999999998865421
Q ss_pred cCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhh
Q 014883 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA 163 (416)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~ 163 (416)
.+..+.-.||+++++.+ ...+.+ .++.+|....+...-..+|..+++|.+...
T Consensus 48 ----tGIlvHkYGpHIFHT~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t 101 (374)
T COG0562 48 ----TGILVHKYGPHIFHTDNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFNLNT 101 (374)
T ss_pred ----CCeEEeeccCceeecCchHHHHHH-----hhhhhhhhhccceeEEECCeeeeccccHHH
Confidence 01112223799887776 333333 234555544433321237899999976543
No 44
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.17 E-value=7.9e-10 Score=107.75 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=49.4
Q ss_pred EEeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 014883 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~ 333 (416)
.+.|.+| .++++.+|++.+...|++++||++|+.|+.+. +| ++.+.+.+|++ ++|+.||..
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence 4566666 46889999999999999999999999999872 43 45566778877 999999943
No 45
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.17 E-value=7.8e-10 Score=109.22 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=46.6
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
++.|.+|. ..+.++|.+.+++.|++++++++|++|..+ ++. +.|++.+| ++.||.||+.
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A 199 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC 199 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence 44566663 688899999899999999999999999875 444 46776665 7999999953
No 46
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.13 E-value=4.2e-09 Score=106.12 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=44.8
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.+.+.+|. ..++++|++.++..|++|+.+++|++|.. ++. +.|++.+| +++||+||+
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t~~g-~v~A~~VV~ 231 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQP-AVVRTPDG-QVTADKVVL 231 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCc-eEEEeCCc-EEECCEEEE
Confidence 55666663 57889999999999999999999999974 222 56776555 799999884
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.06 E-value=2.5e-09 Score=105.03 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=44.0
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
++.+.+|. ..+.++|.+.++..|++++.+++|++|..+ ++. +.|++.++ ++.||+||+
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~ 194 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV 194 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence 34455553 477888888888899999999999999875 444 45776555 799999884
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.03 E-value=6.5e-09 Score=105.05 Aligned_cols=58 Identities=29% Similarity=0.362 Sum_probs=46.7
Q ss_pred ecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEC
Q 014883 274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD 333 (416)
Q Consensus 274 p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~Ad~VI~~ 333 (416)
+.+|...+.+.|.+.+++.|++|+++++|++|..+ ++++++|+.. ++ ..++|+.||+.
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA 187 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA 187 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence 44556778899999899999999999999999986 7888888753 33 36899999943
No 49
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.00 E-value=1.2e-08 Score=101.29 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=45.7
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
++.+.+|. ..++.+|++.+...|++++.+++|++|+.+ +++++++|++.+| ++.|++||+.
T Consensus 172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVva 235 (407)
T TIGR01373 172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGVA 235 (407)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEEC
Confidence 33444453 357778888889999999999999999754 1566677887666 7999998743
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.99 E-value=4.1e-09 Score=103.43 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=43.7
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.+.+.+|. ..+.+++.+.+...|++++++++|++|..+ ++. +.|++.+| ++.||+||.
T Consensus 138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~ 198 (376)
T PRK11259 138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV 198 (376)
T ss_pred EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence 34455553 456677777778899999999999999886 443 56876666 799999993
No 51
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.98 E-value=3.1e-08 Score=101.84 Aligned_cols=49 Identities=31% Similarity=0.523 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
|-=.+....++||||||+| +||+||...+++|.+|+||||.+.+||.+.
T Consensus 7 ~~~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 7 PAGTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCCCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 3333344568999999999 999999999999999999999999999776
No 52
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.97 E-value=4.4e-10 Score=98.16 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=36.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
.++||+|||||.+||+||++|+++|+||+|+|++..+||..+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 3689999999999999999999999999999999999988764
No 53
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.97 E-value=1.7e-08 Score=103.61 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=46.2
Q ss_pred cEEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 014883 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (416)
Q Consensus 270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~Ad~VI~ 332 (416)
++.+|. |. ..+..++++.+..+|++++.+++|+.|..+ ++++++|++. +| .+|+||+||.
T Consensus 138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn 205 (546)
T PRK11101 138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN 205 (546)
T ss_pred EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence 355663 42 467788888888999999999999999886 6777777752 23 4789999994
No 54
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.95 E-value=2.7e-08 Score=91.73 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 281 l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
-.++|...++.+|+.++-+..|+.+...++++..++|++++|..+.|+++|.+
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t 207 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFT 207 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEE
Confidence 34667788899999999999999998765677778999999999999999943
No 55
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.95 E-value=7e-10 Score=96.31 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=39.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
+.||||||||.+||+||++||++|.||+|+|++-.+||-.+-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence 569999999999999999999999999999999999987763
No 56
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.92 E-value=1.7e-08 Score=101.75 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=46.7
Q ss_pred EEeecCC-c---chHHHHHHHHHHh----cC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG-~---~~l~~al~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
.+.|..| . ..++++|.+.++. .| ++|+++++|+.|..+ ++..+.|++.+| +++||+||+.
T Consensus 199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva 268 (497)
T PTZ00383 199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS 268 (497)
T ss_pred EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence 4556543 2 5889999998888 78 678999999999875 455678887666 7999999953
No 57
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.92 E-value=3e-08 Score=104.44 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=46.5
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
+++|.+|. ..+.++|.+.+.. |++++.+++|++|..+ ++. +.|++.+|..+.||+||+
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~ad~VV~ 457 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDG-WQLDFAGGTLASAPVVVL 457 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCE-EEEEECCCcEEECCEEEE
Confidence 56777774 4788999888888 9999999999999876 554 458777777788999994
No 58
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.90 E-value=5.2e-08 Score=96.99 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=46.7
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
+.+|..|. ..+.++|.+.++..|++|+.+++|++|..+ ++++++|++. +.+++||+||+
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~ 251 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV 251 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence 45666553 477889999888999999999999999876 5666678754 55899999994
No 59
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.87 E-value=4.3e-09 Score=94.19 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=43.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhh
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~ 68 (416)
+++|||+|++||+||..|+.+|++|+|+||..-+|||..|-++.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~ 47 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG 47 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence 799999999999999999999999999999999999999988765
No 60
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.79 E-value=3.8e-07 Score=89.34 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=38.5
Q ss_pred ccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccC
Q 014883 23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLS 65 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~ 65 (416)
.++-|||+|+++|+||+.|-|. |.+++|||+.+..||.+...-
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 5788999999999999999775 689999999999999987654
No 61
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.79 E-value=5.5e-09 Score=103.24 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=41.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
.+|||||||||++|++||+.|+++|++|+|||+++.+|.+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4699999999999999999999999999999999999998777
No 62
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.76 E-value=1.1e-07 Score=94.91 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=42.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+.+..+||+|||||++|+-+|+.+|.+|++|+++|++|.-.|-....
T Consensus 8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs 54 (532)
T COG0578 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS 54 (532)
T ss_pred ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence 44568999999999999999999999999999999999988876554
No 63
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.74 E-value=1e-08 Score=94.48 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
.++||+|||||.+||+||++|+++|++|+|+||+..+||.++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 368999999999999999999999999999999999998643
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.72 E-value=1.4e-08 Score=93.91 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++||+|||||++||+||++|+++|++|+|+|++..+||..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 36899999999999999999999999999999999999864
No 65
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.66 E-value=2.6e-08 Score=99.42 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
.+|||||||||++|++||+.|+++|++|+|||+++.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999988764
No 66
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.65 E-value=2.6e-08 Score=100.49 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=42.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.+.+|||+|||||.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT 47 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 3567999999999999999999999999999999999999988544
No 67
>PRK10015 oxidoreductase; Provisional
Probab=98.62 E-value=3.6e-08 Score=98.29 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=36.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
.+|||||||||++|++||+.|+++|++|+|+|+++.+|-.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 4699999999999999999999999999999999887643
No 68
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=3.4e-08 Score=99.69 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=41.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
|.+|||||||+|.+|++||.++++.|++|+++|+++.+||.|...
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~ 45 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV 45 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence 346999999999999999999999999999999989999988543
No 69
>PRK07121 hypothetical protein; Validated
Probab=98.61 E-value=5.6e-08 Score=98.86 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
.++||||||+|.+||+||+.++++|.+|+||||....||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999998653
No 70
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.59 E-value=5.3e-08 Score=97.60 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
....+|+|||||.+||+||..|+++|++|+|+|+++.+||.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34579999999999999999999999999999999999998864
No 71
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.58 E-value=6.1e-08 Score=96.44 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=40.0
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
|..|..+...+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 455666666799999999999999999999999999999999865
No 72
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.58 E-value=1.2e-06 Score=87.71 Aligned_cols=58 Identities=31% Similarity=0.423 Sum_probs=49.4
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI 331 (416)
.+.|.-|. ..++++|++.|..+|+.|.-|++|++|... +++.++|++.-| .|+|.+||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G-~iet~~~V 236 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG-SIETECVV 236 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc-ceecceEE
Confidence 55677773 589999999999999999999999999987 566679997666 69999988
No 73
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.55 E-value=6.3e-08 Score=97.15 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=39.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG~~~s 63 (416)
|++|||||||||.+|+.||.+|+++|++|+|+|+.+ .+||.|..
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 356999999999999999999999999999999986 48998864
No 74
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.55 E-value=7.1e-08 Score=96.27 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcccccChhh
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD 68 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~s~~~~~ 68 (416)
++.+||+|||||++||++|++|.++|.. ++||||++++||.++....++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 5678999999999999999999999999 999999999999988866544
No 75
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.54 E-value=6.8e-08 Score=93.50 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
++||||||||++||++|..|+++|++|+|+|+++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 489999999999999999999999999999998764
No 76
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=7.4e-08 Score=96.58 Aligned_cols=43 Identities=30% Similarity=0.512 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC-CCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~-~GG~~~s 63 (416)
.+|||||||||.+|++||..|++.|++|+|+|+++. +||.|..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN 45 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence 469999999999999999999999999999999875 7997643
No 77
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.54 E-value=9.3e-08 Score=95.70 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=37.6
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.-+++...+|||+|||||++|++||+.|+++|++|+|+|++..
T Consensus 31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3445556679999999999999999999999999999999853
No 78
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.52 E-value=9.4e-08 Score=96.58 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=40.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
+.+|||||||||.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 45799999999999999999999999999999999999997754
No 79
>PRK06370 mercuric reductase; Validated
Probab=98.52 E-value=1e-07 Score=96.25 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=40.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
||.+|||||||+|.+|++||.+|++.|++|+++|+. .+||.|...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 46 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT 46 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc
Confidence 567899999999999999999999999999999986 678877643
No 80
>PTZ00058 glutathione reductase; Provisional
Probab=98.52 E-value=1.3e-07 Score=96.91 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=46.4
Q ss_pred CCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 10 LPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 10 ~~~~~-~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
-|+|+ +++....+|||||||||.+|++||..+++.|++|+++|++ .+||.|-.+
T Consensus 35 ~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~ 89 (561)
T PTZ00058 35 SSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV 89 (561)
T ss_pred cCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc
Confidence 46676 6655556799999999999999999999999999999996 799988653
No 81
>PRK06116 glutathione reductase; Validated
Probab=98.52 E-value=8.4e-08 Score=96.51 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=39.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
+.+|||||||||.+|++||..|++.|++|+|+|++ .+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 34699999999999999999999999999999995 89998754
No 82
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.51 E-value=9.6e-08 Score=95.30 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
||||||||++|++||+.+|++|.+|+++|+.+.+||...+-
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~ 41 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSG 41 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceEC
Confidence 89999999999999999999999999999999999987653
No 83
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.51 E-value=1.2e-07 Score=96.54 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=38.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
|+..|||||||||++|+++|+.|+++|++|+|+|+++..+|..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 3457999999999999999999999999999999998776655
No 84
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.50 E-value=1.1e-07 Score=96.01 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
|.+|||||||||.+|++||.+|++.|++|+|+|+ +.+||.|..
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 3569999999999999999999999999999999 789998764
No 85
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.50 E-value=1.2e-07 Score=93.39 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=36.5
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
++|..+||||||||++||++|+.|+++|++|+|+|+++.+
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 3466789999999999999999999999999999999765
No 86
>PLN02463 lycopene beta cyclase
Probab=98.49 E-value=1.5e-07 Score=93.84 Aligned_cols=48 Identities=29% Similarity=0.627 Sum_probs=43.8
Q ss_pred cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 9 ~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..+.|++.+.....|||||||||++||++|+.|+++|++|+|+|+++.
T Consensus 15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 567788888878889999999999999999999999999999999764
No 87
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.49 E-value=1.3e-07 Score=89.13 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
|||+|||||++||++|+.|++.|.+|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999988765
No 88
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.49 E-value=1.3e-07 Score=95.58 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=39.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.|||||||||++|+.||..|++.|++|+|+|+ +.+||.|...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~ 42 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV 42 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence 38999999999999999999999999999999 8999988653
No 89
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.48 E-value=2.2e-06 Score=85.73 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=48.4
Q ss_pred EeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 014883 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL 332 (416)
Q Consensus 272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~~i~Ad~VI~ 332 (416)
.++.++...+.++|.+.++++|++|+++++|++|+.+++++++++|...+ +.+++|+.||+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 35566677899999999999999999999999998752146777876543 35899999994
No 90
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.47 E-value=1.6e-07 Score=94.86 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+.+|||||||+|.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 45699999999999999999999999999999985 789988654
No 91
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.47 E-value=2.5e-07 Score=94.31 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
+.++||||||+|.+||+||+.++++|.+|+||||.+..||...
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 3478999999999999999999999999999999999998643
No 92
>PRK08013 oxidoreductase; Provisional
Probab=98.47 E-value=1.5e-07 Score=93.25 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
|+++||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 34689999999999999999999999999999999864
No 93
>PRK09126 hypothetical protein; Provisional
Probab=98.46 E-value=1.5e-07 Score=92.83 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=34.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
++||||||||++||++|..|+++|++|+|+|+++.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 39 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA 39 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 6999999999999999999999999999999998753
No 94
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.46 E-value=1.4e-07 Score=94.75 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
+|||||||+|.+|++||.++++.|++|+++|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 59999999999999999999999999999999 589998874
No 95
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.45 E-value=1.9e-07 Score=92.86 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=36.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
+||||||||+.|+++|+.|+++|++|+||||++.+|+-++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as 41 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS 41 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence 6999999999999999999999999999999988775443
No 96
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=1.9e-07 Score=94.46 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
...|||||||||.+|++||.+|++.|++|+++|+. .+||.|...
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 45 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK 45 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence 34799999999999999999999999999999996 899998653
No 97
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.44 E-value=2.2e-07 Score=94.64 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=38.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
|+.+|||||||||++|+++|+.|+++|++|+|||+++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 45679999999999999999999999999999999986555443
No 98
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.44 E-value=1.9e-07 Score=93.85 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=38.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
+|||||||||.+|++||..|++.|++|+++|+. .+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence 599999999999999999999999999999995 79998754
No 99
>PRK07045 putative monooxygenase; Reviewed
Probab=98.43 E-value=2.1e-07 Score=91.76 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=35.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
+..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 46789999999999999999999999999999999864
No 100
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.43 E-value=2e-07 Score=91.76 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
|+.+||+|||||++||++|+.|++.|++|+|+|+++
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 345899999999999999999999999999999875
No 101
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.43 E-value=2e-07 Score=92.48 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=33.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
||..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 456789999999999999999999999999999996
No 102
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=2.1e-07 Score=93.98 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.+|||||||||.+|++||..|++.|++|+++|++. +||.|...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~ 45 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR 45 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec
Confidence 36999999999999999999999999999999987 99987653
No 103
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.43 E-value=2.4e-07 Score=91.54 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (416)
.+.+.|.+.++..|++++.+++|++++.+ ++. +.|++++|++++||.|| ++.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG 166 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAADG 166 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 56667777777789999999999999876 443 45777888899999999 443
No 104
>PLN02661 Putative thiazole synthesis
Probab=98.42 E-value=2.3e-07 Score=88.35 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=37.7
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCccc
Q 014883 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~ 62 (416)
++||+|||+|++||+||+.|+++ |++|+|+|++..+||..+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 58999999999999999999986 999999999999988544
No 105
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.41 E-value=2e-07 Score=92.90 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEC
Q 014883 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVLD 333 (416)
Q Consensus 277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~~ 333 (416)
+...+.+.|.+.++++|++|+++++|++++++ ++++++|... +|+ +|+|+.||+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIlA 198 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVILA 198 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE-
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEec
Confidence 45678899999999999999999999999998 7899998876 454 4789999943
No 106
>PRK12831 putative oxidoreductase; Provisional
Probab=98.41 E-value=3.5e-07 Score=92.13 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
+......||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 3344568999999999999999999999999999999999999875
No 107
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.41 E-value=2.6e-07 Score=94.13 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH 60 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~ 60 (416)
+.+|||||||||++|+.||..+|+.|.+|+++|++ +.+|++
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45699999999999999999999999999999998 577764
No 108
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.41 E-value=3.4e-07 Score=98.49 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
.+.+||+|||||.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 34589999999999999999999999999999999999999864
No 109
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.41 E-value=1.9e-07 Score=83.24 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=32.9
Q ss_pred EEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCccccc
Q 014883 26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 26 iIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~s~ 64 (416)
+|||||++||++|+.|.++|.+ |+|||+++.+||.+..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~ 40 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY 40 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence 7999999999999999999999 99999999999998753
No 110
>PRK07236 hypothetical protein; Provisional
Probab=98.40 E-value=3e-07 Score=90.57 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
|..+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5568999999999999999999999999999999864
No 111
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.39 E-value=3.2e-07 Score=94.48 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--CCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~ 62 (416)
.++||||||+|.+||+||+.++++|.+|+||||.+ .+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 8899654
No 112
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=3.5e-07 Score=92.63 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc------CCCCCCccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL 64 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~------~~~~GG~~~s~ 64 (416)
..+||+||||+|.+|++||.+|++.|++|+|+|+ +..+||.|...
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~ 52 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV 52 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence 3469999999999999999999999999999998 47889988654
No 113
>PRK06184 hypothetical protein; Provisional
Probab=98.39 E-value=3.3e-07 Score=93.53 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~ 65 (416)
|+++||+|||||++||++|+.|++.|.+|+|+|+++.+ .++...+.
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~ 48 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ 48 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeec
Confidence 45689999999999999999999999999999999876 45555444
No 114
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.39 E-value=2.8e-07 Score=90.88 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
|||||||||++|++||+.|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 115
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.39 E-value=3.1e-07 Score=94.67 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=38.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
...|||||||||.+||+||.+|+++|++|+|+|++ .+||.+..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 34599999999999999999999999999999995 78998653
No 116
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.38 E-value=3.3e-07 Score=90.58 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
...||+|||||++||++|..|+++|++|+|+|+++.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 45799999999999999999999999999999997654
No 117
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.38 E-value=3.3e-07 Score=86.73 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
|||+|||||++||+||..|++.|++|+|+|+++ +||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886654
No 118
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.37 E-value=3.8e-07 Score=90.17 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
+||||||||++|++||+.|+++|++|+|+|++...+..|
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c 39 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC 39 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence 599999999999999999999999999999987654433
No 119
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.36 E-value=3.9e-07 Score=91.43 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=36.4
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 014883 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~ 61 (416)
||||||+|++||+||+.++++| .+|+||||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999998864
No 120
>PRK14694 putative mercuric reductase; Provisional
Probab=98.36 E-value=4.2e-07 Score=91.86 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
...|||||||||.+|++||..|++.|++|+++|++ .+||-|..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 45799999999999999999999999999999986 79998864
No 121
>PRK13748 putative mercuric reductase; Provisional
Probab=98.36 E-value=3.8e-07 Score=94.45 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.+|||||||||.+|++||..|++.|++|+|+|++ .+||-|...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~ 139 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV 139 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc
Confidence 4699999999999999999999999999999997 899988653
No 122
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.36 E-value=3.6e-07 Score=88.17 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=41.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~ 65 (416)
.-++.|||||++|++||..|++.|++|.++|+++.+||+...+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 35899999999999999999999999999999999999987765
No 123
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=4e-07 Score=90.07 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=41.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+...+|+|||||.+||++|+.|.+.|++|+|+||.+.+||.+.--
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 445699999999999999999999999999999999999998764
No 124
>PRK12839 hypothetical protein; Provisional
Probab=98.35 E-value=5.2e-07 Score=93.06 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=42.9
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
.|.+..++||||||+|.+||+||+.|+++|.+|+|+||+..+||.+..
T Consensus 2 ~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 2 TPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 344556799999999999999999999999999999999999998753
No 125
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.35 E-value=4.1e-07 Score=89.78 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
...|||+|||||++||++|+.|+++|++|+|+|++..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 4569999999999999999999999999999999763
No 126
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.35 E-value=4.4e-07 Score=92.66 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++||||||+| +||+||+.++++|.+|+||||.+..||.+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 37899999999 99999999999999999999999989865
No 127
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.34 E-value=4.2e-07 Score=89.32 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
||+|||||++||++|..|+++|++|+|+|++..++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 89999999999999999999999999999998765
No 128
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.34 E-value=4.8e-07 Score=89.19 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
.+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5799999999999999999999999999999998754
No 129
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.34 E-value=5.3e-07 Score=88.75 Aligned_cols=59 Identities=32% Similarity=0.363 Sum_probs=45.9
Q ss_pred EEeecCCc---chHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
+..+..|. ..+.++|++.++++| ..+..+++|..+..+ . +.++|.+.+|. ++||+||+.
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a 207 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA 207 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence 45666664 578899999999999 566669999999864 3 66789877776 999999953
No 130
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.34 E-value=3.9e-07 Score=86.38 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 014883 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~ 61 (416)
|||||||+|.+|+++|.+|+++| ++|+|||+.++.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 89999999999999999999998 7999999998776655
No 131
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.34 E-value=5.5e-07 Score=93.24 Aligned_cols=44 Identities=25% Similarity=0.433 Sum_probs=40.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...++||||||+|.+||+||+.++++|.+|+||||.+..||.+.
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 34578999999999999999999999999999999999998865
No 132
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.3e-07 Score=85.14 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~ 65 (416)
+..|||||||||++||+||.+++++|.++.|++....+||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 3579999999999999999999999999666666678887776654
No 133
>PLN02697 lycopene epsilon cyclase
Probab=98.33 E-value=7.8e-07 Score=90.29 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 11 ~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
+-|+++ .....|||||||||++||++|..|+++|++|+++|+....+..
T Consensus 98 ~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n 146 (529)
T PLN02697 98 KLPPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN 146 (529)
T ss_pred cCCCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc
Confidence 445565 4556799999999999999999999999999999987555433
No 134
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.32 E-value=7.7e-07 Score=95.45 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
.+..+|+|||||.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999998764
No 135
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.32 E-value=5.6e-07 Score=88.73 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
||||||||++||++|+.|+++|++|+|||+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999887764
No 136
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.32 E-value=5e-07 Score=89.64 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (416)
.+-++|.+.++..|.+|+.++.|++|..+ ++. +.|++.+|++++||.|| ++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG 165 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG 165 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 45556666666778999999999999876 333 56777888899999999 553
No 137
>PRK06185 hypothetical protein; Provisional
Probab=98.31 E-value=5.8e-07 Score=89.19 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4569999999999999999999999999999999864
No 138
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.31 E-value=5.6e-07 Score=88.88 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC---CCeEEEEccCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPNP 55 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~---G~~V~vlE~~~ 55 (416)
|..+||+|||||++||++|+.|+++ |++|+|+|++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 4568999999999999999999998 99999999963
No 139
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.31 E-value=6.1e-07 Score=90.65 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=37.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
|||||||||.+|++||.+|++.|++|+++|+.. +||.|-.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 799999999999999999999999999999975 8888754
No 140
>PRK06834 hypothetical protein; Provisional
Probab=98.31 E-value=6.8e-07 Score=90.63 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=38.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC---CCCcccccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSLS 65 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~---~GG~~~s~~ 65 (416)
|+++||||||||++||++|+.|+++|.+|+|+|+++. .|.+...+.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~ 49 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH 49 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC
Confidence 4568999999999999999999999999999999875 344554443
No 141
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.30 E-value=8.9e-07 Score=93.12 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
.+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999999865
No 142
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.30 E-value=7.3e-07 Score=87.15 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
+||+|||||+.||++|+.|+++|++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999875
No 143
>PLN02985 squalene monooxygenase
Probab=98.30 E-value=8.5e-07 Score=90.29 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.....+||||||||++||++|+.|+++|++|+|+|+....
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~ 78 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLRE 78 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCC
Confidence 3455789999999999999999999999999999998643
No 144
>PRK14727 putative mercuric reductase; Provisional
Probab=98.30 E-value=6.3e-07 Score=90.83 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=41.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
..|||||||+|.+|++||..|++.|++|+++|+++.+||.|...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~ 58 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV 58 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence 46899999999999999999999999999999999999998753
No 145
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.29 E-value=9.4e-07 Score=88.77 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=40.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
..+..+||+|||+|++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 345568999999999999999999999999999999999999764
No 146
>PRK06847 hypothetical protein; Provisional
Probab=98.29 E-value=7.5e-07 Score=87.34 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
...||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4579999999999999999999999999999998764
No 147
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.29 E-value=7.3e-07 Score=88.55 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=42.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+.+||+||||+|.+|..||.++++.|++|+++|+..++||-|-.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 567999999999999999999999999999999999999999765
No 148
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.29 E-value=7.4e-07 Score=96.51 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
....+|+|||+|++||+||..|+++|++|+|+|+++++||..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 3467999999999999999999999999999999999999865
No 149
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.29 E-value=6.5e-07 Score=88.34 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999984
No 150
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.27 E-value=9.1e-07 Score=81.65 Aligned_cols=43 Identities=35% Similarity=0.443 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--CCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~ 62 (416)
+.++||||||||++||.||+.||.+|++|++||+.. .+||.+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 457899999999999999999999999999999865 4677653
No 151
>PRK07190 hypothetical protein; Provisional
Probab=98.27 E-value=8.6e-07 Score=89.79 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~ 65 (416)
+..+||+|||||++||++|+.|+++|.+|+|+|+++.+ +|++....
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~ 50 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALN 50 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeC
Confidence 34589999999999999999999999999999999875 56654443
No 152
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.27 E-value=8.6e-07 Score=90.16 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
++.+.+.+.++..|.++++++.|++|... ++. ..|++.+|+++.+|.||+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~ 272 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY 272 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence 46677778788899999999999999864 333 457777888999999994
No 153
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=9.8e-07 Score=92.05 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=36.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
...++||||||+|++||+||..++++|.+|+|+||....||
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 34468999999999999999999999999999999986655
No 154
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.26 E-value=7.6e-07 Score=87.54 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (416)
Q Consensus 279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (416)
..+.+.|.+.+.. .|++++++++|++|..+ ++. +.|++.+|++++||.|| ++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence 3566777776666 48999999999999875 333 56777788889999999 554
No 155
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.26 E-value=8.9e-07 Score=91.20 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++||||||+|.+||+||..|+++|.+|+|||++..+||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 36899999999999999999999999999999999999965
No 156
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.26 E-value=1.2e-06 Score=91.72 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=43.2
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
|+.++..+...+|+|||+|++||+||..|++.|++|+|+|+++++||..+
T Consensus 301 ~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 301 PDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 33344444567999999999999999999999999999999999999875
No 157
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.26 E-value=1.1e-06 Score=91.23 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++...++||||||+|.+||+||+.++++|.+|+||||....||.+
T Consensus 6 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred cCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 3455567899999999999999999999999999999988766643
No 158
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.25 E-value=9.1e-07 Score=91.54 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++||||||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 36899999999999999999999999999999999999843
No 159
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.25 E-value=8.6e-07 Score=87.39 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 014883 278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP 334 (416)
Q Consensus 278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI-~~p 334 (416)
-..|-++|.+.+...+ .+++.++.|+.+..+ ++.+ .|+++ +|++++||.|| ++.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v-~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGV-TVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCce-EEEEcCCCcEEecCEEEECCC
Confidence 3455666667676666 799999999999987 4444 47778 99999999999 554
No 160
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.25 E-value=8.6e-07 Score=86.99 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.+||+|||||++||++|+.|+++|++|+|+|+++
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 3799999999999999999999999999999975
No 161
>PRK06753 hypothetical protein; Provisional
Probab=98.24 E-value=9.4e-07 Score=86.61 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
.||+|||||++||++|..|+++|++|+|+|+++...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 389999999999999999999999999999998764
No 162
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=1.1e-06 Score=91.12 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=36.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
...||||||+|++||+||..++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4569999999999999999999999999999999887664
No 163
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.22 E-value=1.1e-06 Score=86.83 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999984
No 164
>PTZ00367 squalene epoxidase; Provisional
Probab=98.22 E-value=1.2e-06 Score=89.74 Aligned_cols=36 Identities=28% Similarity=0.543 Sum_probs=33.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..++||||||||++||++|..|+++|++|+|+|++.
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 356999999999999999999999999999999975
No 165
>PLN02507 glutathione reductase
Probab=98.22 E-value=1.3e-06 Score=88.88 Aligned_cols=44 Identities=23% Similarity=0.138 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc---------CCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP---------NPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~s 63 (416)
+.+|||||||+|.+|+.||.++++.|++|+++|+ .+.+||.|..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 4469999999999999999999999999999996 3679999865
No 166
>PRK11445 putative oxidoreductase; Provisional
Probab=98.22 E-value=1.1e-06 Score=85.38 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
+|||+|||||++||++|+.|+++ ++|+|+|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 38999999999999999999999 999999999865
No 167
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.22 E-value=1.5e-06 Score=94.97 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
+..||+|||||++||+||..|++.|++|+|+|+.+.+||..+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 4579999999999999999999999999999999999998653
No 168
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22 E-value=1.4e-06 Score=90.21 Aligned_cols=42 Identities=31% Similarity=0.263 Sum_probs=38.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
...++||||||+|.+||+||..++++|.+|+||||....||.
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 4 PVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred CccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 345689999999999999999999999999999999887774
No 169
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.22 E-value=1.3e-06 Score=85.35 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=36.2
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC-cccc
Q 014883 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS-HFSS 63 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG-~~~s 63 (416)
||||||||++||++|..|+++ |++|+|+|+.+..|| ++++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~ 43 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS 43 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce
Confidence 899999999999999999998 999999999998887 3443
No 170
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.22 E-value=1.4e-06 Score=90.86 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=36.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
...|||||||||+.|+++|+.|+++|++|+|||+++.-+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3459999999999999999999999999999999976666
No 171
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.22 E-value=1.8e-06 Score=89.06 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~ 65 (416)
.++||+|||||++||++|+.|++.|++|+|+|+++.+ +++...+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~ 68 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA 68 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence 4689999999999999999999999999999999866 55554443
No 172
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.22 E-value=1.5e-06 Score=89.69 Aligned_cols=42 Identities=26% Similarity=0.552 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
.++||||||+|.+|++||+.++++|.+|+||||...+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 468999999999999999999999999999999999988653
No 173
>PRK06126 hypothetical protein; Provisional
Probab=98.22 E-value=1.3e-06 Score=90.03 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=38.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~ 65 (416)
+..+||+|||||++||++|+.|++.|++|+|+|+++.. .+++..+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~ 52 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTS 52 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCC
Confidence 44689999999999999999999999999999998743 34444433
No 174
>PRK08244 hypothetical protein; Provisional
Probab=98.22 E-value=1.2e-06 Score=89.21 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~ 65 (416)
++||+|||||++||++|+.|++.|++|+|+|+++.. .|+..++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~ 47 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLH 47 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEec
Confidence 489999999999999999999999999999998754 45555543
No 175
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.21 E-value=1.2e-06 Score=87.78 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~ 56 (416)
|||+|||||++||++|+.|++ +|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999654
No 176
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.21 E-value=1.2e-06 Score=86.76 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~ 56 (416)
.|||+|||||++||++|+.|+++| ++|+|+|+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 389999999999999999999996 99999999874
No 177
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.20 E-value=1.8e-06 Score=88.70 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
+.++||||||+|.+||+||+.++++|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 34689999999999999999999999999999999987773
No 178
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=1.5e-06 Score=90.18 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
+...++||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus 8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 3345789999999999999999999999999999998776664
No 179
>PRK07538 hypothetical protein; Provisional
Probab=98.20 E-value=1.4e-06 Score=86.75 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 38999999999999999999999999999998754
No 180
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.19 E-value=2.1e-06 Score=86.84 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...+||+|||+|.+||+||..|++.|++|+|+|+.+++||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999999764
No 181
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.19 E-value=2.3e-06 Score=86.40 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=41.6
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
++...+..+|+|||+|.+||+||..|++.|++|+++|+++.+||..+
T Consensus 135 ~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 135 SHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 33334567999999999999999999999999999999999999775
No 182
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=1.7e-06 Score=89.33 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++||||||+|.+||+||..++++|.+|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 46899999999999999999999999999999998777743
No 183
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.18 E-value=1.6e-06 Score=81.54 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
...+||||||||.+|.+.|+.|+|.|++|+|+|+.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 45789999999999999999999999999999996
No 184
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.18 E-value=2.3e-06 Score=88.71 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=41.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
...++||||||+|.+|++||..++++|++|+|||+++.+||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 345789999999999999999999999999999999999998654
No 185
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.18 E-value=1.8e-06 Score=88.86 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=36.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
+..+||+|||||++||++|..|++.|++|+|+|+++.++.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~ 47 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD 47 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 4568999999999999999999999999999999987643
No 186
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.18 E-value=1.9e-06 Score=94.46 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=40.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
..+||+|||||++||+||..|+++|++|+|+|+++++||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998864
No 187
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.17 E-value=1.7e-06 Score=86.46 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
.++||||||+|.+||+||..++ +|.+|+||||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999975 79999999999988874
No 188
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.17 E-value=2e-06 Score=89.55 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++||||||+|.+||.||+.++++|.+|+|+||....||.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999998877643
No 189
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=1.9e-06 Score=90.01 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
.++||||||+|.+||+||..++++|.+|+|+||+..+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 4689999999999999999999999999999998888644
No 190
>PLN02546 glutathione reductase
Probab=98.16 E-value=2e-06 Score=88.23 Aligned_cols=44 Identities=27% Similarity=0.144 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc---------CCCCCCccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP---------NPFYGSHFSSL 64 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~s~ 64 (416)
.+|||||||+|.+|+.||..+++.|++|+++|+ ...+||-|-.+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 369999999999999999999999999999997 26789988754
No 191
>PRK07588 hypothetical protein; Provisional
Probab=98.16 E-value=1.8e-06 Score=85.22 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 38999999999999999999999999999998653
No 192
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.15 E-value=1.8e-06 Score=87.31 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.5
Q ss_pred cEEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCC--cEEEcCEEEEC
Q 014883 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD 333 (416)
Q Consensus 270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G--~~i~Ad~VI~~ 333 (416)
+.+.|.+|. ..+.++|.+.++..|++|+++++|++|..+. ++. +.|++ .+| .+++||+||+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence 355677763 6899999999989999999999999998751 333 34432 234 36899999843
No 193
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.15 E-value=2.4e-06 Score=81.55 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=36.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~ 65 (416)
-+|||||||++||++|+.|+|.|++|+|||++.-+=|.-.+.+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~ 45 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSIN 45 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCccee
Confidence 4899999999999999999999999999999876644333333
No 194
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.15 E-value=2.3e-06 Score=86.59 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.++.+.+.+.++..|.++++++.|++|..+ ++....|++.+|+++.+|.||+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~ 282 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM 282 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence 567788888888999999999999999865 2323456677888999999994
No 195
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.14 E-value=2.2e-06 Score=86.73 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s 63 (416)
+.++||||||||+.|+++|+.|++. |.+|+||||.+.+|+..+.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 4568999999999999999999984 8999999999888765543
No 196
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.14 E-value=2.2e-06 Score=88.07 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
+...++||||||+|++||+||+.++ +|.+|+|+||.+..||.+
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 3455789999999999999999986 599999999999888743
No 197
>PRK10262 thioredoxin reductase; Provisional
Probab=98.14 E-value=2.4e-06 Score=82.04 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
..+||+|||||++||.||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67887654
No 198
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.14 E-value=2.1e-06 Score=87.41 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=35.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
..|+|||||.+||+||..|.+.|++|+++|+++.+||.++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 47999999999999999999999999999999999999974
No 199
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.14 E-value=3.1e-06 Score=90.49 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
....||+|||||++||+||..|++.|++|+|+|+++.+||..+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3467999999999999999999999999999999999999865
No 200
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.14 E-value=2.3e-06 Score=89.22 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=36.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
.++||||||+|++||.||..++++|.+|+|+||....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 3589999999999999999999999999999999887764
No 201
>PRK02106 choline dehydrogenase; Validated
Probab=98.13 E-value=2.4e-06 Score=88.32 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=34.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCC
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF 56 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~ 56 (416)
+..+||+||||+|.+|+++|.+|++ +|++|+|||+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 3456999999999999999999999 8999999999964
No 202
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.13 E-value=3e-06 Score=85.08 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=39.2
Q ss_pred cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccc
Q 014883 22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s 63 (416)
..+|+|||||.+||.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4689999999999999999987 79999999999999998875
No 203
>PRK05868 hypothetical protein; Validated
Probab=98.13 E-value=2.6e-06 Score=83.45 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999998764
No 204
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.12 E-value=2.8e-06 Score=82.99 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
.||+|||||++||.||+.|++.|++|+|+|+++...-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 4999999999999999999999999999998876643
No 205
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.12 E-value=2.7e-06 Score=87.08 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...|||+|||||++||+||.+|++.|++|+|+|. ++||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 4469999999999999999999999999999986 4999875
No 206
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.11 E-value=2.4e-06 Score=88.47 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~ 60 (416)
.++||||||+|.+||+||+.++++| .+|+|+||....||.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 4689999999999999999999874 899999999877764
No 207
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.10 E-value=3.1e-06 Score=88.67 Aligned_cols=40 Identities=33% Similarity=0.393 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
.++||||||+|++||.||..++++|.+|+||||....||.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 4689999999999999999999999999999999887663
No 208
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.09 E-value=3.2e-06 Score=82.85 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.8
Q ss_pred cEEEECCChhHHHHHHHH--hhCCCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~L--a~~G~~V~vlE~~~~~ 57 (416)
||||||||++||++|++| ++.|++|+|+|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999999887
No 209
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.09 E-value=4.2e-06 Score=83.28 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=45.6
Q ss_pred CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 12 ~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.|..++-..+...|.|||||.+||+||..|+++|++|+|+|+.+..||+...-
T Consensus 113 i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 113 IPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG 165 (457)
T ss_pred CCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence 44444444555899999999999999999999999999999999999998753
No 210
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.09 E-value=3.2e-06 Score=88.33 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCC--CCcccccC
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSLS 65 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~--GG~~~s~~ 65 (416)
+++++||+|||||++||++|+.|++ +|.+|+|+|+++.. .|++-.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~ 78 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIA 78 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEC
Confidence 3557999999999999999999999 59999999998643 45554333
No 211
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.08 E-value=3.5e-06 Score=87.35 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCCCCcc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF 61 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~GG~~ 61 (416)
..++||+|||+|.+||+||..++++| .+|+|+||....||.+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 34689999999999999999999998 8999999999877743
No 212
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.08 E-value=4.1e-06 Score=93.25 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
+.++||||||+|.+||+||+..+++|.+|+||||.+..||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4468999999999999999999999999999999999999753
No 213
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.08 E-value=4.4e-06 Score=87.72 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...+|+|||+|++||+||..|++.|++|+|+|+++++||...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 357999999999999999999999999999999999999874
No 214
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.08 E-value=3.5e-06 Score=87.27 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
||||||+|++||+||+.++++|.+|+||||....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999998877744
No 215
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.08 E-value=3.8e-06 Score=85.31 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=37.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
|||||||+|.+|+++|+.|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999999754
No 216
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.07 E-value=5.5e-06 Score=83.53 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...++|+|||||++||+||..|++.|++|+|+|+++++||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3357999999999999999999999999999999999999754
No 217
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.07 E-value=3.7e-06 Score=83.32 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
-+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 48999999999999999999999999999998754
No 218
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.07 E-value=4.1e-06 Score=85.65 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...|||+|||||.+||+||.+|++.|++|+|+|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4469999999999999999999999999999985 6999875
No 219
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.07 E-value=3.7e-06 Score=82.62 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=35.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
||+|||||++|+.||..|++.|++|+|+|+++..|-..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~ 39 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA 39 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence 89999999999999999999999999999988876543
No 220
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.06 E-value=4.1e-06 Score=87.22 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=39.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSL 64 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~s~ 64 (416)
+|||||||+|.+|..||..+++.|++|+|+|+. +.+||-|-..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~ 159 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV 159 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence 689999999999999999999999999999974 5799987654
No 221
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.06 E-value=6.2e-06 Score=85.46 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
.++||||||+|.+|++||..++++|++|+|||+++..||.+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 3689999999999999999999999999999999999997753
No 222
>PLN02815 L-aspartate oxidase
Probab=98.05 E-value=5.7e-06 Score=85.52 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
..++||||||+|++||+||+.++++| +|+||||....||.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 33589999999999999999999999 99999999998874
No 223
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.04 E-value=7.1e-06 Score=83.16 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...+|+|||+|++||+||..|++.|++|+|+|+.+++||...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 346999999999999999999999999999999999999775
No 224
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.03 E-value=4.9e-06 Score=84.56 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=35.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
++||||||+|++||.||+.++++|. |+|+||.+..||.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 4799999999999999999999998 99999998877743
No 225
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.03 E-value=4.6e-06 Score=86.43 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
....+|+|||||++||++|..|++.|++|+|+|++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 346899999999999999999999999999999975
No 226
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.03 E-value=5.2e-06 Score=82.63 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGS 59 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG 59 (416)
+|+|||||++||++|..|+++| .+|+|+|+++.++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~ 38 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGE 38 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCC
Confidence 6999999999999999999998 59999999988754
No 227
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.02 E-value=5.2e-06 Score=78.89 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHhh------CCCeEEEEccCCCCCCcccccC
Q 014883 21 TAFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFSSLS 65 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~------~G~~V~vlE~~~~~GG~~~s~~ 65 (416)
..+||+|||||.+||+||++|.+ .-.+|+|+|+...+||.+-|-.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 46999999999999999999854 3479999999999999988754
No 228
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.01 E-value=5.4e-06 Score=84.55 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=35.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
++||||||+|.+||.||..+++ |.+|+|+||.+..||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 6899999999999999999976 99999999999877753
No 229
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.01 E-value=5.8e-06 Score=83.28 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s 63 (416)
..+||||||||++|+++|+.|++. |.+|+|||+.+.+|-..+.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~ 49 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN 49 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence 457999999999999999999999 9999999997788765543
No 230
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.01 E-value=5.7e-06 Score=86.08 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC
Q 014883 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG 59 (416)
.++||||||+|.+||+||+.++++ |.+|+|+||.+..++
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 368999999999999999999998 999999999987544
No 231
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.01 E-value=5.9e-06 Score=86.68 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=47.3
Q ss_pred cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 9 ~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
-|-+|+-| ...+-..|.|||+|.+||+||..|-++|+.|+|+|+.+|+||...-
T Consensus 1773 gwm~p~pp-~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1773 GWMKPCPP-AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred cCCccCCc-ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 47777644 4456689999999999999999999999999999999999998864
No 232
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.01 E-value=8.4e-06 Score=86.72 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=38.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
..+..+|+|||+|++||+||+.|++.|++|+|+|+.+..|+..
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~ 422 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPF 422 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccccc
Confidence 3456799999999999999999999999999999988776653
No 233
>PRK06996 hypothetical protein; Provisional
Probab=98.00 E-value=6e-06 Score=81.72 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEEccCCC
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF 56 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G----~~V~vlE~~~~ 56 (416)
+....+||+|||||++||++|+.|+++| ++|+|+|+++.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 3455789999999999999999999997 47999999864
No 234
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.99 E-value=6.7e-06 Score=83.01 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
..+.+.|.+.++..|.+++.+ .|+.+..+ ++++++|.. +++.+.|+.||+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL 169 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI 169 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence 468888988888899998865 78888765 778888875 677899999994
No 235
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.98 E-value=7.2e-06 Score=83.11 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=37.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--------CCCCcccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS 63 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~s 63 (416)
+||+||||+|.+|+.||..+++.|++|+++|+.. .+||-|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 4899999999999999999999999999999742 58998754
No 236
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.97 E-value=4.3e-06 Score=82.70 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=44.2
Q ss_pred EeecC-CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 272 IYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 272 ~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.||.. ....+.+.|.+.+++.|.++++++.|++|..+ ++ .+.|++ +++++.||.||+
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIl 154 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVIL 154 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEE
Confidence 35443 35788899999888899999999999999764 33 356775 667899999994
No 237
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.97 E-value=1e-05 Score=78.65 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=38.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
.+|+|||+|.+||.+|..|++.|++|+++|+.+++||...
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 5899999999999999999999999999999999999764
No 238
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.97 E-value=7.5e-06 Score=84.81 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=36.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 014883 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~ 61 (416)
.++||||||+|.+||+||+.++++ |.+|+|+||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 358999999999999999999987 47999999998877744
No 239
>PRK08275 putative oxidoreductase; Provisional
Probab=97.97 E-value=7.5e-06 Score=84.46 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (416)
..+.+.|.+.++..|.+|+.++.|++|.++ ++|+++||.. .+|+ .+.|+.||+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTD-ADGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEc-CCCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 467788888888889999999999999875 2577778753 3554 478999884
No 240
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.97 E-value=5.5e-06 Score=80.18 Aligned_cols=43 Identities=30% Similarity=0.362 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEE-ccCCCCCCcccccCh
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHL-DPNPFYGSHFSSLSI 66 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vl-E~~~~~GG~~~s~~~ 66 (416)
||||||||++|+.||+.+|+.|.+|+++ ++.+.+|...-+-.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsi 44 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSI 44 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhh
Confidence 8999999999999999999999999999 778888876544443
No 241
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.96 E-value=7.3e-06 Score=84.40 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (416)
.++.+.|.+.+...|++|++++.|+++.+++ +++++||.. .+|+ .+.|+.||+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl 191 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL 191 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence 4677888887777899999999999998872 444777653 3554 578999994
No 242
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.95 E-value=8.5e-06 Score=80.57 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL 332 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~--~i~Ad~VI~ 332 (416)
++.++|.+.++..|++|++++.|+++..+ ++++..|...+|+ .++||.||+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL 312 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL 312 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence 78999999998999999999999999876 5666666545554 589999884
No 243
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.95 E-value=8.9e-06 Score=83.14 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=40.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s 63 (416)
++..++||||||+|.+||.||..++.+|.+|+++||....+|.+..
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 4456799999999999999999999999999999999998865543
No 244
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.95 E-value=1e-05 Score=83.17 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
+.++||||||+|.+||+||+.+++. .+|+|+||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3468999999999999999999987 899999999988874
No 245
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.95 E-value=7.7e-06 Score=75.59 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE--EEcCEEE-ECCCCCCCCC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFTVPGS 341 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~--i~Ad~VI-~~p~~~~~~l 341 (416)
.+.++|.+..+.+||.++.+-+|.+.... +|++..|.+.+... ++||.+| .+.++.-..|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 67788989999999999999999999987 88888898877765 5888877 5566553443
No 246
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=9.7e-06 Score=84.11 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
.++||||||+|++||+||+.+++. .+|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 468999999999999999999987 99999999876565
No 247
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.93 E-value=9.2e-06 Score=84.01 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=36.3
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 014883 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~ 61 (416)
++||+|||+|++||.||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 58999999999999999999987 58999999999888754
No 248
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.87 E-value=1.6e-05 Score=70.58 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
||||||||++|++||..|++.|++|+++|+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~ 34 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGT 34 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 7999999999999999999999999999877653
No 249
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.85 E-value=2.4e-05 Score=81.04 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
...+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 346899999999999999999999999999999999999764
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=1.8e-05 Score=79.78 Aligned_cols=40 Identities=30% Similarity=0.377 Sum_probs=36.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+|||||+|.+|++||.+|++.|++|+++|++ .+||-|...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~ 41 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE 41 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC
Confidence 7999999999999999999999999999987 578877643
No 251
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.83 E-value=2.4e-05 Score=77.76 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHHH-hhCCCeEEEEccCCCCCCccccc
Q 014883 22 AFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~L-a~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
...|+|||||.+||.||..| ++.|++|.|+|+.+.+||..+.-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 45899999999999999975 56799999999999999998853
No 252
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.83 E-value=1.6e-05 Score=81.58 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=33.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
..+||+||||+|.+|.++|.+|+++|++|+|||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 45799999999999999999999999999999996
No 253
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.78 E-value=0.0012 Score=64.66 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=46.9
Q ss_pred EEeecCCc----chHHHHHHHHHHhc-CcEEEcCCceeEEEEecCCCcEEEEEeC-----CCcEEEcCEEEEC
Q 014883 271 LIYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG~----~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-----~G~~i~Ad~VI~~ 333 (416)
..+...|+ ++|.+.|.+.+... |.+++++++|+.|.+.. +|. |.|++. +.++++|+.|++.
T Consensus 169 at~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 169 ATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred eeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence 34666774 78999999888777 99999999999999973 553 566542 2357899999965
No 254
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.78 E-value=4.3e-05 Score=57.16 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=33.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
.|+|||||+.|+-+|..|++.|.+|+++|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 38999999999999999999999999999999998
No 255
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.76 E-value=2.8e-05 Score=80.58 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHh----hCCCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La----~~G~~V~vlE~~~~~ 57 (416)
||||||+|.+||.||+.++ ++|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999998763
No 256
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.76 E-value=2.6e-05 Score=73.50 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=41.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.+|||+|||+|.+|-.||...++.|.+...+|+|..+||-|-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV 81 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence 47999999999999999999999999999999999999998754
No 257
>PRK13984 putative oxidoreductase; Provisional
Probab=97.74 E-value=4.3e-05 Score=79.84 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
....+|+|||+|.+||+||..|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3457999999999999999999999999999999999999764
No 258
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.73 E-value=3.4e-05 Score=77.93 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=37.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.|+||||+|.+|+.||..|++.|++|+++|++ .+||.|...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~ 42 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT 42 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc
Confidence 48999999999999999999999999999987 589988654
No 259
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.72 E-value=3.7e-05 Score=78.54 Aligned_cols=38 Identities=34% Similarity=0.330 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
|||||||+|++|+.||..+++.|.+|+++|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 79999999999999999999999999999998554443
No 260
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.72 E-value=3.3e-05 Score=78.89 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhc-CcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 014883 279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~Ad~VI~ 332 (416)
..+.++|.+.+... |++|+.+++|++|..+ +|++++|...+ ++ .+.|+.||+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 46888888877664 8999999999999876 78888887543 33 589999994
No 261
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.72 E-value=2.7e-05 Score=80.93 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.3
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
|||||+|.+||+||+.++++|.+|+||||.+.+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 799999999999999999999999999999977643
No 262
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.70 E-value=3.1e-05 Score=79.64 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~ 56 (416)
|+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999999 79999999864
No 263
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.69 E-value=3.6e-05 Score=71.52 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCC---------CCcccccChh
Q 014883 21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFY---------GSHFSSLSIA 67 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~---------GG~~~s~~~~ 67 (416)
.++||+|||+|..|++.|..|.+ .|.+|+|+|+++.| ||.|..|.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp 144 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP 144 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence 36899999999999999999854 57999999999975 6666666554
No 264
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.69 E-value=3.9e-05 Score=77.19 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+||+||||+|.+|..||.+ ++|++|+++|+ +.+||-|-.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence 5999999999999998654 47999999998 5799998764
No 265
>PRK07846 mycothione reductase; Reviewed
Probab=97.69 E-value=4.1e-05 Score=77.01 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=34.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+||+||||+|.+|..||.+ ++|++|+++|+ +.+||-|-.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence 4899999999999988876 46999999998 5789988654
No 266
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.68 E-value=3.8e-05 Score=82.16 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~ 57 (416)
+|+|||||++||+||+.|++. |++|+|+|++...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 799999999999999999998 8999999999873
No 267
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.67 E-value=4.8e-05 Score=82.87 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..++||||||+|.+||.||..++++|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3468999999999999999999999999999999875
No 268
>PLN02785 Protein HOTHEAD
Probab=97.59 E-value=7.9e-05 Score=77.04 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 36999999999999999999999 699999999764
No 269
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.58 E-value=6.8e-05 Score=73.51 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC-CCC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD-PSF 336 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~~-p~~ 336 (416)
..+.++|.+.++.+|++++.++.|+++..+ ++++++|.+.++ .+++||+||+. ...
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence 477888999999999999999999999987 777777876665 48999998843 444
No 270
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.52 E-value=0.00075 Score=63.72 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~~s~ 64 (416)
+..-+-|||+|++||++|+.|-| .|.++.++|--+..||..-..
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~ 68 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGA 68 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCC
Confidence 34678999999999999999965 579999999999999976543
No 271
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.46 E-value=0.00013 Score=67.25 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=39.7
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883 17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 17 ~~~~~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s 63 (416)
++...+||.||||||+.||+.|+.|.-. +.+|.|||+...++=..+.
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg 91 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG 91 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence 4556689999999999999999999877 9999999998877644443
No 272
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.00011 Score=72.57 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=31.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
+..|||||||||++|+-||.+.||.|.+++++=-+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 45699999999999999999999999999998654
No 273
>PRK09897 hypothetical protein; Provisional
Probab=97.39 E-value=0.00018 Score=73.27 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=35.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCC-Ccccc
Q 014883 23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SHFSS 63 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~G-G~~~s 63 (416)
++|+|||+|.+|+++|..|.+.+ .+|+|+|++..+| |...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 58999999999999999998865 4899999999999 65444
No 274
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.29 E-value=0.00021 Score=71.82 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (416)
+.+.+-|.+.|.+.|++++.++ |..+..++ +|.++.|++.+|++++||.|| ++.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG 208 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCC
Confidence 4677778888899999998875 88888873 888889999999999999999 653
No 275
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.23 E-value=0.00038 Score=64.42 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=38.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
++.--|||||+|++||+|+-.+-..|-.|++||++...||...
T Consensus 7 ~~lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 7 AELSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred ccCCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 3333699999999999999999999999999999999999754
No 276
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.22 E-value=0.00039 Score=68.79 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
.+.+.+.+.+++.|.++++++.|++|.. ++. +.|++.+|+++.||.||+.
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a 236 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYG 236 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEEC
Confidence 4556677777889999999999999964 222 4677889999999999954
No 277
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00034 Score=67.96 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=38.4
Q ss_pred CcCCCCCCC--CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 8 SELPVPPYP--PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 8 ~~~~~~~~~--~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
.-.|+||-+ ....+.|||||||||++|+-||++-|+-|-+.++|-.+
T Consensus 12 ~s~~~~Rr~~~~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 12 TSFPLPRRCVFSSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccCcchhhhhcccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 345688833 33366899999999999999999999999999988664
No 278
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.19 E-value=0.00036 Score=68.44 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
||+|||+|++||++|..|++. ++|+|+=|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999999 999999988765
No 279
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.11 E-value=0.00047 Score=69.26 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
.++.+.+.+.++..|.++++++.|++|.. +++...|.+ +++++.||.||+.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a 241 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA 241 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence 46777777888899999999999999953 344456664 5568999999954
No 280
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.11 E-value=0.00015 Score=62.99 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=36.4
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 014883 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~ 62 (416)
-||||||+|-+||+||+..+++ ..+|.++|+.--+||-+|
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 5999999999999999999865 699999999999988765
No 281
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.01 E-value=0.0007 Score=66.91 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
.+|+|||+|..||.+|..|++.|++|+++|+.+++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5999999999999999999999999999999999999986
No 282
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.00 E-value=0.00093 Score=66.72 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=33.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
+++.+|||||||++|+.+|..|.+.+++|+|+|++++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4567999999999999999999988999999999885
No 283
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.98 E-value=0.00082 Score=67.41 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
.++.+.+.+.+++.|.++++++.|++|. .. .|++++|+++.+|.||+.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a 236 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG 236 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence 3567777788888999999999999984 22 356678889999999954
No 284
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.96 E-value=0.0011 Score=67.30 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=35.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCC
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY 57 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~ 57 (416)
....||.||||||-+|++.|.+|++. -.+|++||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 35579999999999999999999998 7999999998776
No 285
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.00073 Score=62.80 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=35.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.--|.|||||++|+-||+.++++|.+|.++|.++.=+--+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 3468999999999999999999999999999997766433
No 286
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.95 E-value=0.0014 Score=61.46 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=41.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~ 64 (416)
.+||..|||||-+|+++|++.+..|.+|.++|..-++||-|-..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~ 62 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV 62 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence 37999999999999999999999999999999999999988653
No 287
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0011 Score=61.94 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=31.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~ 53 (416)
.-+||.||||+|-+||+||-..+..|.+|.+||-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 3479999999999999999999999999999996
No 288
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.58 E-value=0.0025 Score=54.23 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=30.6
Q ss_pred EEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCC-Cccc
Q 014883 26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYG-SHFS 62 (416)
Q Consensus 26 iIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~G-G~~~ 62 (416)
+|||+|++|++++..|.+. ..+|+|+|+++. | |...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~ 42 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY 42 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence 5999999999999999887 689999999665 5 5443
No 289
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.57 E-value=0.0082 Score=57.63 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=49.7
Q ss_pred EEeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
++.|.+| ...+.+++.+.+.+.|++++.+++|+.|..+ ++++++|.+.+| +++||+||+.
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a 188 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA 188 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence 5566666 3788999999999999999999999999986 677778886565 8999999943
No 290
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.47 E-value=0.0017 Score=59.30 Aligned_cols=45 Identities=9% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCCccc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~ 62 (416)
-+.....++|||+|+.|..+|++|++.+ ..++++|++...||...
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 3444579999999999999999999999 99999999999888654
No 291
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.44 E-value=0.0038 Score=59.91 Aligned_cols=42 Identities=29% Similarity=0.500 Sum_probs=34.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhC----CCeEEEEccC--CCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~--~~~GG~~~ 62 (416)
..|||||||||+.|++.|+.|..+ -+||++||.. +..|+--.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~ 82 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKP 82 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccccc
Confidence 379999999999999999999864 4899999999 44444433
No 292
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.38 E-value=0.0039 Score=54.61 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.|.|||.|..||..|+.||++|++|+.+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 689999999999999999999999999999864
No 293
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.33 E-value=0.0042 Score=60.64 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p 334 (416)
.+.+.+.+.+++.|.++++++.|++|. .+ .|++.+|+++.+|.||+.+
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~ 239 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWAT 239 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEcc
Confidence 466777777889999999999999884 23 4666789999999999543
No 294
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.31 E-value=0.012 Score=57.43 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 014883 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (416)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (416)
.-.+.+.|.+.++.+|++|++++.|..|+.. ++.+.+|.+++|++|.||+||+.|-
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccC
Confidence 3466788888889999999999999999997 6667789999999999999997654
No 295
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.26 E-value=0.0055 Score=59.92 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV 331 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~-~i~Ad~VI 331 (416)
.++++...+..+++|.+|+++++|++|..+ +|++.+|+ +|.|+.||
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~~I~~~tvv 255 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEEEIPADTVV 255 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCeeEecCEEE
Confidence 456666667788999999999999999642 46677887 49999999
No 296
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0054 Score=58.29 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccccC
Q 014883 21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSLS 65 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s~~ 65 (416)
+...|.|||+|.+|+.+|..|-+ .+..|.++|+.+.++|..+.--
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV 65 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV 65 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc
Confidence 34589999999999999998887 4899999999999999998644
No 297
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.05 E-value=0.0075 Score=59.66 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=36.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
-+|+|||+|+.|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 369999999999999999999999999999999987654
No 298
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.93 E-value=0.042 Score=54.00 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=47.5
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
+++|.+|. ..+.++|.+.+.. |++++.+++|++|..+ ++. +.|++.+|++++||+||+
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~ 184 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL 184 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence 55677774 6888999888888 9999999999999875 444 678888888899999994
No 299
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0048 Score=57.91 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=34.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (416)
..|||.|||+|.+|-+||.+-||+|.+.=++ .+|.||...
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl 249 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL 249 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence 4699999999999999999999999998775 357888764
No 300
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.90 E-value=0.012 Score=59.85 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4799999999999999999999999999998864
No 301
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.01 Score=58.46 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=34.7
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCccc
Q 014883 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS 62 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~ 62 (416)
+++|+|||+|++|+..|..|.+. ++ +.|+|+++..|+-..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence 37999999999999999999774 34 999999999987654
No 302
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.88 E-value=0.011 Score=51.53 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.|.|||+|..|...|..++++|++|.++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 378999999999999999999999999999643
No 303
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.84 E-value=0.011 Score=57.98 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
.+.+.+.+.++..|.+++++++|++|..+ ++. +.|++.+|+++.||.||+.
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a 234 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAA 234 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEEC
Confidence 45666777778899999999999999865 333 5677889999999999954
No 304
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.83 E-value=0.011 Score=50.29 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.|.|||||-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48899999999999999999999999999976
No 305
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.78 E-value=0.046 Score=53.21 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=67.5
Q ss_pred cCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHH
Q 014883 206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285 (416)
Q Consensus 206 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al 285 (416)
...|+.+||++.+.++...+-+..+....+|.++. + +..+...+...+. .+| .+-++||...|++.|
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~------i~a~~G~vSla~a---~~g-l~sV~GGN~qI~~~l 134 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---N------IHAFAGLVSLAGA---TGG-LWSVEGGNWQIFEGL 134 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---c------hhhhhhheeeeec---cCC-ceEecCCHHHHHHHH
Confidence 45688999999999987775444443445565531 1 2223333322221 123 568999999999988
Q ss_pred HHHHHhcCcEEEcCCceeEEEEecCCCc-EEEEEeCC--CcEE-EcCEEEECC
Q 014883 286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQDI-LSHKLVLDP 334 (416)
Q Consensus 286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~l~~--G~~i-~Ad~VI~~p 334 (416)
.+ .-|+++ +++.|++|.....++. ...|...+ +... ..|.||++.
T Consensus 135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAt 183 (368)
T PF07156_consen 135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIAT 183 (368)
T ss_pred HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECC
Confidence 65 568899 9999999943212332 23444332 2223 459999653
No 306
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.72 E-value=0.0053 Score=60.84 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=36.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.|||+|||||-.|.-+|..-+-.|.+|.++|++|.--|-.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 4999999999999999999999999999999999865543
No 307
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.66 E-value=0.0081 Score=58.03 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=28.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~ 57 (416)
.||+|+||.|+++|+.|+.|...+ .+++.||+++..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 589999999999999999999987 999999998753
No 308
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.60 E-value=0.016 Score=56.90 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence 47999999999999999999999999999999987644
No 309
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.59 E-value=0.014 Score=58.91 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.|.|||.|.+|++||..|+++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999998765
No 310
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.47 E-value=0.018 Score=62.28 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p 334 (416)
.+.+.+.+.++..|.+|++++.|++|..+. ++....|++.+|+++.+|.||+.+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence 345566677788999999999999997541 244567888899999999999543
No 311
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.45 E-value=0.02 Score=57.40 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++.++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 47999999999999999999999999999999988655
No 312
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.37 E-value=0.019 Score=58.17 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 4799999999999999999999999999999988744
No 313
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.018 Score=54.85 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
+|.|||+|+-|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 314
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.24 E-value=0.023 Score=57.38 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 4899999999999999999999999999999998764
No 315
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.18 E-value=0.029 Score=53.54 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
++...|.|||+|.-|.+.|..|+++|++|+++.++.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 344579999999999999999999999999998864
No 316
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.14 E-value=0.025 Score=57.17 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence 47999999999999999999999999999999887643
No 317
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.14 E-value=0.031 Score=47.01 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
|.|+|+|-.|+..|++|+++|++|.++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 318
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.031 Score=56.29 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
....|+|||+|..|+.+|..|++.|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34689999999999999999999999999999975
No 319
>PRK06370 mercuric reductase; Validated
Probab=95.01 E-value=0.032 Score=56.37 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999999988764
No 320
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.98 E-value=0.03 Score=56.34 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999998763
No 321
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.97 E-value=0.025 Score=60.95 Aligned_cols=51 Identities=14% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 014883 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (416)
Q Consensus 281 l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p 334 (416)
+.+.+.+.++..|.++++++.|++|.. +++..+|++++|+++.+|.||+.+
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~ 234 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAA 234 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECC
Confidence 445566777889999999999999974 345567888999999999999543
No 322
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.92 E-value=0.032 Score=56.34 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 47999999999999999999999999999999987543
No 323
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.92 E-value=0.03 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||.|..|+..|..|+++|++|+++|.+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998654
No 324
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.90 E-value=0.033 Score=56.37 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~ 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 37999999999999999999999999999998877543
No 325
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.90 E-value=0.033 Score=56.45 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987643
No 326
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.88 E-value=0.035 Score=52.33 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999875
No 327
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.87 E-value=0.035 Score=56.08 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999988754
No 328
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.86 E-value=0.036 Score=56.13 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC
Confidence 47999999999999999999999999999999987543
No 329
>PRK07846 mycothione reductase; Reviewed
Probab=94.85 E-value=0.036 Score=55.86 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~ 203 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR 203 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence 4799999999999999999999999999999998753
No 330
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.84 E-value=0.041 Score=51.98 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
...|.|||+|.-|...|..|+++|++|+++|.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3479999999999999999999999999999874
No 331
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.81 E-value=0.11 Score=51.21 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
|||+|||+|++|+++|..|+++|++|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999975
No 332
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.80 E-value=0.035 Score=55.74 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh
Confidence 37999999999999999999999999999999987643
No 333
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.75 E-value=0.078 Score=46.80 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.++.+-|.+.++.++.++++++.|++|..+ ++. +.|++.++++++||+||+
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVl 132 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVL 132 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEE
Confidence 345666777778888889999999999998 444 889998888999999994
No 334
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.74 E-value=0.041 Score=55.58 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-+++|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999998875
No 335
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.72 E-value=0.033 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999998854
No 336
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.69 E-value=0.042 Score=51.74 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.|.|||+|..|..-|..|+++|++|+++|.++.-
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6999999999999999999999999999988653
No 337
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.65 E-value=0.041 Score=54.97 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999998874
No 338
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.64 E-value=0.047 Score=55.13 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=35.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
..++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 47999999999999999999999999999999988653
No 339
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.04 Score=49.91 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
+++|||+|--|.+.|..|++.|+.|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 689999999999999999999999999999753
No 340
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.55 E-value=0.041 Score=59.35 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
..|+|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 3699999999999999999999999999999888744
No 341
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.54 E-value=0.22 Score=48.59 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=46.2
Q ss_pred EEeecC-CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 014883 271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G-~~i~Ad~VI~ 332 (416)
..||.- -++++.++|.+.++..|++|+++++|++| + ++. ..|++.++ ++++||+||+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl 135 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL 135 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence 578855 48899999999999999999999999999 3 333 56776443 5799999994
No 342
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.44 E-value=0.05 Score=55.18 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence 48999999999999999999999999999999987543
No 343
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.36 E-value=0.05 Score=51.12 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999997654
No 344
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.33 E-value=0.066 Score=51.10 Aligned_cols=34 Identities=35% Similarity=0.380 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||+|..|..-|..++.+|++|+++|.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 345
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.21 E-value=0.058 Score=54.34 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
..++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988754
No 346
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.18 E-value=0.053 Score=52.22 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
++.|||+|..||+.|+.||+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999999865
No 347
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.14 E-value=0.057 Score=55.37 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 489999999999999999999999999999988774
No 348
>PRK04148 hypothetical protein; Provisional
Probab=94.14 E-value=0.046 Score=44.85 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 888889999999999999999877
No 349
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.01 E-value=0.067 Score=53.69 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4699999999999999999999999999999887654
No 350
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.98 E-value=0.081 Score=53.56 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=35.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 379999999999999999999999999999999887653
No 351
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.93 E-value=0.071 Score=50.32 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999998764
No 352
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.90 E-value=0.07 Score=53.71 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999999876
No 353
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.90 E-value=0.067 Score=57.99 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
.++|||+|+.|+-+|..|++.|.+|+|+|..+++-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 689999999999999999999999999999987644
No 354
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.85 E-value=0.089 Score=45.27 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|+|+|+|..|+.||..|...|.+|+++|.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 589999999999999999999999999999853
No 355
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=93.85 E-value=0.074 Score=55.91 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~ 350 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL 350 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence 37999999999999999999999999999999998753
No 356
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.81 E-value=0.048 Score=50.66 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC--------CCCCCcccccC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS 65 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~--------~~~GG~~~s~~ 65 (416)
-+|+|||+|..|.-||....--|-+|+++|.| +.+|||..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 58999999999999999999999999999999 67788877654
No 357
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.80 E-value=0.08 Score=53.27 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++-.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 203 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR 203 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence 3699999999999999999999999999999888643
No 358
>PTZ00058 glutathione reductase; Provisional
Probab=93.77 E-value=0.074 Score=54.93 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 4799999999999999999999999999999998763
No 359
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.76 E-value=0.078 Score=50.21 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.|.|||+|-.|...|..|+++|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999999999999853
No 360
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.71 E-value=0.087 Score=52.73 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=35.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
.++|||||.-|+=.|..+++-|-+|+|+|+++++--..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~ 212 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE 212 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC
Confidence 59999999999999999999999999999999987633
No 361
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=93.70 E-value=0.15 Score=50.61 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
||||||+|++||+||+.++++|.+|+|+||.+.+||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999999
No 362
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.69 E-value=0.1 Score=49.38 Aligned_cols=33 Identities=36% Similarity=0.456 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|.|||+|.-|...|..|+++|++|.++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999875
No 363
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.68 E-value=0.078 Score=54.41 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.+|+|||||.+|+-+|..|+..|.+|+++++.+++
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 48999999999999999999999999999998876
No 364
>PRK10262 thioredoxin reductase; Provisional
Probab=93.67 E-value=0.089 Score=50.34 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
-.|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998875
No 365
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.65 E-value=0.12 Score=44.43 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.6
Q ss_pred CcccEEEECCCh-hHHHHHHHHhhCCCeEEEEccC
Q 014883 21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 21 ~~~DViIIGaGl-~GL~aA~~La~~G~~V~vlE~~ 54 (416)
....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 357899999995 7999999999999999999986
No 366
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.64 E-value=0.093 Score=50.01 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999765
No 367
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.62 E-value=0.23 Score=50.48 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=36.7
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s 63 (416)
+||||||||+.|+++|+.|++. |.+|+|||+.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 6999999999999999999997 9999999999888754444
No 368
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.58 E-value=0.075 Score=52.85 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998764
No 369
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.56 E-value=0.083 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~ 56 (416)
-.|+|||+|..|+-+|..|++.|.+ |+|++++++
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999997 999998765
No 370
>PLN02507 glutathione reductase
Probab=93.54 E-value=0.092 Score=53.61 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 479999999999999999999999999999998764
No 371
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.50 E-value=0.086 Score=54.59 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
-.|+|||+|..|+-.|..|++.|.+|+++++.++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998865
No 372
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.39 E-value=0.1 Score=49.59 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.+|.|||+|--|...|++|+++|.+|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999863
No 373
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.31 E-value=0.092 Score=50.72 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 69999999999999999999999999999753
No 374
>PRK06116 glutathione reductase; Validated
Probab=93.30 E-value=0.11 Score=52.29 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (416)
-.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 479999999999999999999999999999988764
No 375
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.29 E-value=0.11 Score=49.42 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~ 55 (416)
+|.|||+|..|+++|..|++.| ..|.++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 6899999874
No 376
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=93.29 E-value=0.23 Score=50.56 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=45.3
Q ss_pred cEEeecCC---cchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 014883 270 ALIYPIYG---QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (416)
Q Consensus 270 ~~~~p~gG---~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~~ 333 (416)
+.+.|.+| ...+.++|.+.++..| ++|+++++|++|..+. ++. +.|++ .+|+ +++|++||+.
T Consensus 171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence 45567766 3589999999888887 6999999999998752 443 34443 3354 6999999843
No 377
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.28 E-value=0.12 Score=52.01 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (416)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 37999999999999999999999999999999887644
No 378
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.26 E-value=0.25 Score=50.71 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=46.5
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 014883 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (416)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~Ad~VI~ 332 (416)
+.++ .|. ..+..++++.+.++|++|+.+++|++|..+ ++++++|++. +| .+|+|+.||.
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn 184 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN 184 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence 5566 452 577888999999999999999999999986 6777777753 34 3689999993
No 379
>PRK12831 putative oxidoreductase; Provisional
Probab=93.26 E-value=0.1 Score=52.71 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4899999999999999999999999999998765
No 380
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.17 E-value=0.11 Score=49.34 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDP 53 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~ 53 (416)
.|.|||+|.-|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 381
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.10 E-value=0.14 Score=49.23 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|.|||+|--|...|..|+++|++|.+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 382
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.10 E-value=0.14 Score=48.71 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~ 56 (416)
..|.|||+|..|+..|..|+..|+ +|+++|.++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 369999999999999999999887 8999998543
No 383
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.01 E-value=0.11 Score=52.30 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~ 56 (416)
+.|.|||+|..||..|+.||++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 3699999999999999999998 588999997653
No 384
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.97 E-value=0.31 Score=49.12 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASG---KSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~ 57 (416)
||||||+|.+|.++|+.|++.+ .+|+|+|+.+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 7999999999999999999999 999999998653
No 385
>PLN02546 glutathione reductase
Probab=92.96 E-value=0.13 Score=53.18 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999988754
No 386
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.89 E-value=0.13 Score=48.26 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 48999999999999999999999999999998765
No 387
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.11 Score=45.95 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEcc---CCCC-CCccccc
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDP---NPFY-GSHFSSL 64 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~---~~~~-GG~~~s~ 64 (416)
-.|+|||+|.++-+||++++++-.+-+++|- ++.. ||...|-
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 4899999999999999999999999999994 3333 6665553
No 388
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.87 E-value=0.15 Score=45.50 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+...|+|||||-.|+..+..|.+.|.+|+|+..+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34589999999999999999999999999998753
No 389
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.79 E-value=0.15 Score=48.86 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 390
>PRK13748 putative mercuric reductase; Provisional
Probab=92.78 E-value=0.14 Score=53.15 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
-.++|||+|..|+-.|..|++.|.+|++++++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 304 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL 304 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 3799999999999999999999999999998643
No 391
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.76 E-value=0.12 Score=47.76 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=27.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-------CeEEEEccC
Q 014883 22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPN 54 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G-------~~V~vlE~~ 54 (416)
..+++|||+|..||+.|..+.+.+ .+|.|++-+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 469999999999999999888855 567777654
No 392
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=92.74 E-value=0.39 Score=50.04 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEEC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVLD 333 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-d~VI~~ 333 (416)
..|.++|.+.++..|++|+++++|++|+.+ ++++++|+.. +++ +++| +.||+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlA 273 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLA 273 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEc
Confidence 468899999999999999999999999886 7888887653 333 4789 888843
No 393
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.72 E-value=0.17 Score=49.65 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=34.9
Q ss_pred CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 15 ~~~~~~~~~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+.++++....|.||| .|+-|-..|..|+++|+.|.++++++
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 344555556899999 89999999999999999999999864
No 394
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.71 E-value=0.17 Score=43.18 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|-|||.|..|...|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 478999999999999999999999999999764
No 395
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.71 E-value=0.17 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999999999999999999999875
No 396
>PRK14694 putative mercuric reductase; Provisional
Probab=92.68 E-value=0.16 Score=51.38 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
-.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999743
No 397
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.59 E-value=0.57 Score=46.40 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=43.5
Q ss_pred cEEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 014883 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL 332 (416)
Q Consensus 270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~Ad~VI~ 332 (416)
++++|..|. ..+.++|.+.++..|++|+.+++|++|..+ ++. +.|.+.++ .+++||+||+
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~~~~~~~~~i~a~~vV~ 252 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGG-VVLTVQPSAEHPSRTLEFDGVVV 252 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCE-EEEEEEcCCCCccceEecCEEEE
Confidence 355666554 356788889899999999999999999875 444 33433332 3799999994
No 398
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.58 E-value=0.16 Score=49.74 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999863
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.50 E-value=0.11 Score=40.81 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+.+...|+|||+|-.|..-+..|.++|.+|+|+-...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3455789999999999999999999999999998875
No 400
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.50 E-value=0.16 Score=51.36 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.|.|+|.|.+|+++|..|.+.|++|.+.|.++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999875
No 401
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.48 E-value=0.22 Score=48.71 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=37.0
Q ss_pred CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 014883 13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 13 ~~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
|+-++++.....|+|.|+ |+-|...+..|.++|++|+.+.++
T Consensus 12 ~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 12 EREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 556667767788999998 999999999999999999999875
No 402
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.44 E-value=0.16 Score=49.12 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~ 57 (416)
++..+|+|.||-|..-|..|+.|+..+ .+++.||+.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 466799999999999999999999976 889999998764
No 403
>PRK07121 hypothetical protein; Validated
Probab=92.41 E-value=0.39 Score=48.93 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=43.9
Q ss_pred CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 014883 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (416)
Q Consensus 277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A-d~VI~ 332 (416)
+...+.+.|.+.+++.|++|+++++|++|.++ ++|++++|+..+ ++ .++| +.||+
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~~~~~i~a~k~VVl 233 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVD-DDGRVVGVEARRYGETVAIRARKGVVL 233 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence 34578899999899999999999999999986 257888887543 33 4789 88884
No 404
>PRK14727 putative mercuric reductase; Provisional
Probab=92.38 E-value=0.19 Score=51.06 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
-.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 369999999999999999999999999999754
No 405
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.23 E-value=0.18 Score=41.66 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
++|+|+|.-+...|..++.-|++|+|+|-+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999854
No 406
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.22 E-value=0.23 Score=49.93 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
..++|+|.|-+|+++|..|++.|++|.+.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 47999999999999999999999999999987654
No 407
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.21 E-value=0.19 Score=49.02 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=38.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEEccC--------CCCCCcccccChh
Q 014883 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN--------PFYGSHFSSLSIA 67 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~--------~~~GG~~~s~~~~ 67 (416)
.+|+|||+|..|..+|..|++.| .+|++.+|. ...+++..+..++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 48999999999999999999999 999999998 5556666665543
No 408
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.18 E-value=0.24 Score=39.40 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
|||||.|--|...+..|.+.+.+|+++|.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999854
No 409
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.17 E-value=0.22 Score=42.38 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=30.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEc
Q 014883 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLD 52 (416)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE 52 (416)
+.+...|+|||||-.|+.-|..|.++|.+|+|+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3455789999999999999999999999999994
No 410
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.15 E-value=0.17 Score=47.36 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.|.|||.|.-|.+.|..|+++|++|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 411
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.13 E-value=0.31 Score=43.27 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=32.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.....++|+|.|-.|..+|..|.+.|.+|++.|.+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 344579999999999999999999999999999763
No 412
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.07 E-value=0.22 Score=44.31 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~ 53 (416)
.....|+|||||=.|...|..|.++|.+|+|++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3456899999999999999999999999999975
No 413
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.03 E-value=0.18 Score=49.58 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
.|.|||.|..|+..|..|+. |++|+++|.+...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 58999999999999988885 9999999986543
No 414
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.98 E-value=0.15 Score=49.95 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=35.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCCCc
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYGSH 60 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~GG~ 60 (416)
++...+||||||||.+|+.+|+.|+.. .++++++|...+.==+
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r 61 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR 61 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhh
Confidence 556689999999999999999999963 7999999987654433
No 415
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.96 E-value=0.19 Score=50.93 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|+|+|.|-+|.+||..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 416
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.94 E-value=0.18 Score=44.76 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
...|.|||||+.|.-.|-..+.+|+.|.++|++..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 35799999999999999999999999999999854
No 417
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=91.88 E-value=0.57 Score=45.81 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (416)
..+.+.+.+.++.....-+....|+.|..+ ++++++|.+.+|+.+.||.||+.
T Consensus 95 ~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVla 147 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLA 147 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-
T ss_pred HHHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEe
Confidence 455667777777766655678999999997 89999999999999999999943
No 418
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.86 E-value=0.2 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~ 56 (416)
-.|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999998 8999998765
No 419
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.84 E-value=0.21 Score=50.99 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999999999974
No 420
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=91.82 E-value=0.55 Score=46.98 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI 331 (416)
.+-+.|.+.+++.|++|+.+++|++|..+ ++++++|+ .+|++++||.||
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI 157 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVI 157 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEE
Confidence 45566777788899999999999999876 66666665 577889999999
No 421
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.80 E-value=0.24 Score=49.82 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|+|+|+|-+|+++|..|++.|++|.+.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999999999999999765
No 422
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.79 E-value=0.22 Score=50.83 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.|.|||+|.-|..-|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999864
No 423
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.74 E-value=0.2 Score=51.02 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999999999974
No 424
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.70 E-value=0.25 Score=49.76 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=34.2
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+|.++--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 56666679999999999999999999999999999875
No 425
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.70 E-value=0.23 Score=47.68 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
++.|||+|--|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999998853
No 426
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.64 E-value=0.22 Score=50.69 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
..|+|+|.|.+|++++..|.+.|++|++.|.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999965
No 427
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=91.64 E-value=0.59 Score=48.67 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A-d~VI~ 332 (416)
..|.++|.+.++..|++|+++++|++++.+ ++++++|...+ |+ .+.| +.||+
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl 276 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL 276 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence 368889999899999999999999999876 78888887654 33 4676 67884
No 428
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.62 E-value=0.23 Score=50.48 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCCC
Q 014883 23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La---~~G~~V~vlE~~~~~GG 59 (416)
-.++|||+|..|+-.|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999996554 45999999999998764
No 429
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.55 E-value=0.2 Score=51.03 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||+|..|...|..|+++|++|+++|++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998754
No 430
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.52 E-value=0.26 Score=49.91 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=33.9
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+.+++.+. .|.|+|.|-+|+++|..|.+.|++|.+.|++.
T Consensus 9 ~~~~~~~~--~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 9 ALPQELSG--RVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred hcccccCC--eEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 35555554 49999999999999999999999999999753
No 431
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.36 E-value=0.27 Score=49.07 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred cEEEECCChhHHHHHHHHhh--------------CCCeEEEEccCCCCCCc
Q 014883 24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH 60 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~--------------~G~~V~vlE~~~~~GG~ 60 (416)
.|+|||+|..|+-.|..|+. .|.+|+++|+.+++...
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~ 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence 79999999999999999985 58999999999887553
No 432
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.34 E-value=0.78 Score=45.65 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+|||+|||+|++|++||+.|+++|++|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999874
No 433
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=91.29 E-value=0.68 Score=47.41 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEE
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVL 332 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~Ad~VI~ 332 (416)
.+.+.|.+.+++.|++|+++++|++|..+ +|++++|.+. ++ .+++||.||+
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~~VVl 245 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSKAVVV 245 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecCeEEE
Confidence 68889998889999999999999999875 7887777653 33 3689999994
No 434
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.27 E-value=0.23 Score=49.33 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
...|.|+|-|.+|++||..|.+.|.+|+|.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 357999999999999999999999999999987776
No 435
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.21 E-value=0.29 Score=44.08 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.8
Q ss_pred cEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.|.||| +|.-|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999997654
No 436
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.17 E-value=0.16 Score=41.39 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
....+|.|||+|=.|-..|..|.++|+.|.-+..++.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 4457999999999999999999999999998877653
No 437
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.16 E-value=0.37 Score=39.76 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCe-EEEEccC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~ 54 (416)
...|+|||+|=+|-.++..|++.|.+ |.|+-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45899999999999999999999988 9999875
No 438
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=91.08 E-value=0.78 Score=45.14 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (416)
...+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999998754
No 439
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.06 E-value=0.28 Score=50.14 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||+|..|...|..|+++|++|+++|.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3589999999999999999999999999998765
No 440
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.95 E-value=0.26 Score=50.01 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.-.|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999999999999999999988875
No 441
>PRK06847 hypothetical protein; Provisional
Probab=90.93 E-value=0.82 Score=44.58 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
..+.+.|.+.+...|.+|+++++|++|..+ ++. +.|++.+|+++.||.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence 467788888888889999999999999875 443 567778999999999993
No 442
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.85 E-value=0.69 Score=48.25 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcCE-EEE
Q 014883 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL 332 (416)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad~-VI~ 332 (416)
...+...|.+.++..|++|+++++|++|+++ ++|++++|... +|+ .++|++ ||+
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d-~~g~V~Gv~~~~~~~~~~i~a~~aVil 269 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITD-PDGAVVGAVVEREGRTLRIGARRGVIL 269 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEEC-CCCcEEEEEEEeCCcEEEEEeceeEEE
Confidence 4567777878888899999999999999986 37888888654 343 468874 773
No 443
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.84 E-value=0.24 Score=52.86 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||||..|.-.|..++++|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998854
No 444
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.84 E-value=0.38 Score=42.68 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~ 54 (416)
...|.|||+|--|...|..|+++|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999998 58888875
No 445
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=90.82 E-value=0.82 Score=46.49 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=44.0
Q ss_pred cEEeecCC---cchHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEC
Q 014883 270 ALIYPIYG---QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD 333 (416)
Q Consensus 270 ~~~~p~gG---~~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---l~~G~--~i~Ad~VI~~ 333 (416)
+.+.|.++ ...+.++|++.+.. .|++++++++|+.|..+. ++. |.|+ +.+|+ +++||+||+.
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence 45566665 35888999988854 589999999999998752 333 4454 33443 6899999843
No 446
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.53 E-value=0.29 Score=52.67 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~ 56 (416)
-.|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999997 999998865
No 447
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=90.50 E-value=0.67 Score=46.44 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~ 332 (416)
..+.+.|.+.+++.|++|+++++|++|+.+ +++++++|++. +++ .+.||.||+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQD-DQGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEEC-CCCcEEEEEEEeCCCeEEEEecceEEE
Confidence 468899999999999999999999999986 26777777653 343 368999993
No 448
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.49 E-value=0.32 Score=45.89 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
.|.|||.|..|...|..|+++|++|.+++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 37899999999999999999999999999874
No 449
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=90.41 E-value=0.96 Score=41.82 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-----------CcEEEcCEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-----------GQDILSHKLV 331 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-----------G~~i~Ad~VI 331 (416)
..+.+.|.+.+...|++|++++.|..+..+ +++++.+|.+.. ..+++|+.||
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~-~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILR-EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEe-CCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 577888988888999999999999999876 244777776431 2478999999
No 450
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=90.37 E-value=1 Score=46.77 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=45.8
Q ss_pred eecCCcc-hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883 273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (416)
Q Consensus 273 ~p~gG~~-~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (416)
++..+++ .|.++|.+.+...|.+|+.+++|++++++ +|+++||.. .+|+ .|.|+.||+
T Consensus 112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 3333343 68899988888899999999999999986 789999864 2464 578999994
No 451
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.32 E-value=0.92 Score=44.71 Aligned_cols=52 Identities=25% Similarity=0.196 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~ 333 (416)
..+.+.|.+.+...|++++.+++|++|..+ ++. +.|++++|+++.||.|| ++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~Ad 163 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVAAD 163 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEEcC
Confidence 467788888888889999999999999875 443 56777889999999999 44
No 452
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.27 E-value=0.33 Score=51.76 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||||..|...|..++++|++|+++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 453
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.25 E-value=0.4 Score=45.59 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 014883 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~ 56 (416)
.|+|||+|..|.+.|..|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 58999999754
No 454
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.19 E-value=0.37 Score=45.46 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
..|.|||||.-|---|..++.+|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 47899999999999999999999999999998
No 455
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=90.11 E-value=1 Score=44.07 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=32.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~ 57 (416)
||+|||||++||++|..|+++| ++|+|+|+++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 8999999999999999999999 999999998654
No 456
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.07 E-value=0.44 Score=45.29 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~ 56 (416)
..|.|||+|..|...|..|+..|+ +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999998654
No 457
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.07 E-value=0.36 Score=48.13 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
-.|.|||-|.+|.++|..|.+.|++|.+.|.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4699999999999999999999999999997643
No 458
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.98 E-value=0.89 Score=33.49 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC
Q 014883 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (416)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G 322 (416)
-..+.+.+.+..+..|.++++++.|++|..+ +++ +. |+++||
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~-V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDG-VE-VTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTS-EE-EEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCE-EE-EEEecC
Confidence 3467777778888999999999999999987 245 54 888876
No 459
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.86 E-value=0.39 Score=45.44 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999864
No 460
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.83 E-value=0.39 Score=45.56 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883 25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (416)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~ 55 (416)
|.|||+|..|...|..|+..|+ +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999985
No 461
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.81 E-value=0.38 Score=49.14 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 369999999999999999999999999999865
No 462
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=89.76 E-value=1 Score=43.90 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883 279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (416)
Q Consensus 279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (416)
..+.+.|.+.+.+.| ++|+.+++|++|..+ ++. +.|++.+|++++||.|| ++.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCC
Confidence 467788888888888 999999999999876 444 46777899999999999 543
No 463
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.72 E-value=0.37 Score=48.54 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
..|.|+|.|.+|.+||..|.+ |.+|+|.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 369999999999999999995 9999999965
No 464
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=89.71 E-value=1.6 Score=43.17 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=34.1
Q ss_pred EEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883 26 IVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (416)
Q Consensus 26 iIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (416)
||||||.+||+||+.|+++|++|+|+|+++.+|+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence 699999999999999999999999999999998754
No 465
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.64 E-value=0.82 Score=34.35 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEEcc
Q 014883 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP 53 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~ 53 (416)
...++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 789999988
No 466
>PRK10015 oxidoreductase; Provisional
Probab=89.61 E-value=1.2 Score=44.52 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
.+-+.|.+.+++.|++++.++.|+.|..+ ++++.+|+ .++++++||.||.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~-~~~~~i~A~~VI~ 158 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQ-AGDDILEANVVIL 158 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEE-eCCeEEECCEEEE
Confidence 44455777788899999999999999876 66666676 4566899999994
No 467
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.59 E-value=0.45 Score=46.99 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.-.|+|+|+|.-|+.+|..|...|.+|+|+|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 34799999999999999999999999999998753
No 468
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.58 E-value=0.81 Score=45.14 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=35.4
Q ss_pred CCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 15 YPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 15 ~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+.+.+.....|+|+|| |.-|..++..|.++|++|.++.++.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 5556666778999997 9999999999999999999998764
No 469
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.57 E-value=0.55 Score=43.06 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
...++|+|+|.-+...|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 35899999999999999999999999999997755
No 470
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.45 E-value=0.63 Score=44.02 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
...|.|||.|-.|+.+|..|.+.|.+|.+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4589999999999999999999999999999984
No 471
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.44 E-value=0.41 Score=48.38 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHH-HHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 36999999999999 59999999999999998765
No 472
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.42 E-value=0.56 Score=43.50 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~ 56 (416)
...|+|||.|-.|..+|-.|+++| .+++++|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 468999999999999999999999 89999997644
No 473
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=89.38 E-value=1.1 Score=46.71 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC--Cc-EEEcC-EEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~--G~-~i~Ad-~VI~ 332 (416)
.+|.++|.+.+++.|++|+++++|++|.++ ++++++|++.+ ++ .+.|+ .||+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl 269 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL 269 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence 678899988889999999999999999987 78888887643 33 47786 5773
No 474
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=89.36 E-value=1.1 Score=43.98 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
.+||+|||||++||++|..|+++|++|+|+|++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999998
No 475
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=89.33 E-value=1.1 Score=46.39 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 014883 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (416)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad-~VI~ 332 (416)
...|.+.|.+.+++.|++|+++++|++|+.+ +|++++|... +|+ .+.|+ .||+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl 263 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL 263 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence 3467888888889999999999999999987 7888898763 454 47885 5773
No 476
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=89.32 E-value=1.5 Score=46.22 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (416)
..+..+|++.++..|++|+.+++|++|..++.++++++|++ .+++ +++||.||.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn 290 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN 290 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence 47888999999999999999999999987511366777765 2444 579999994
No 477
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.21 E-value=0.39 Score=51.39 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
..|.|||+|..|.-.|..++.+|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999998754
No 478
>PRK06834 hypothetical protein; Provisional
Probab=89.15 E-value=1.3 Score=45.17 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~ 333 (416)
..+-+.|.+.++..|.+|+.+++|++|+++ ++. +.|++.+|++++||.|| ++
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~--~~~-v~v~~~~g~~i~a~~vVgAD 152 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQD--DTG-VDVELSDGRTLRAQYLVGCD 152 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEec
Confidence 356677777778889999999999999986 333 46777788899999999 54
No 479
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=89.12 E-value=1.5 Score=42.90 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (416)
+.++||||||||+.||++|+.|+++|.+|+|+|++.-.+|
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence 4578999999999999999999999999999999876663
No 480
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=89.08 E-value=1.6 Score=40.22 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCC--cEEEEEeCC-----------CcEEEcCEEE-ECC
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLV-LDP 334 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~l~~-----------G~~i~Ad~VI-~~p 334 (416)
.++.+.|.+.+.+.|++++.++.|+.+..+ ++ ++.+|.+.. ..+++|+.|| ++.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG 167 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATG 167 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeec
Confidence 477888888888899999999999999886 44 677887632 2478999999 444
No 481
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.06 E-value=0.69 Score=44.29 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY 57 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~ 57 (416)
..|+|||+|..|...|..|+..|+ +|.++|.+...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 589999999999999999999996 99999987764
No 482
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.01 E-value=0.52 Score=41.64 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
-+.|+|+|--|.+.|.+|+++|++|.+-=++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 5899999999999999999999999986443
No 483
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.98 E-value=1.3 Score=43.69 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 47999999999999999999999999999999874
No 484
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.90 E-value=0.78 Score=38.49 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~ 55 (416)
...++|||+|..|...|..|++.| ++|.+++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 357999999999999999999996 8999998764
No 485
>PRK07045 putative monooxygenase; Reviewed
Probab=88.87 E-value=1.4 Score=43.24 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=42.4
Q ss_pred hHHHHHHHHHH-hcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883 280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (416)
Q Consensus 280 ~l~~al~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (416)
.|-+.|.+.++ ..|.++++++.|+.|..+ +++.++.|++++|+++.||.|| ++.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~~~~~~vIgADG 162 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERD-ADGTVTSVTLSDGERVAPTVLVGADG 162 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-CCCcEEEEEeCCCCEEECCEEEECCC
Confidence 56666766664 467999999999999986 3565567888899999999999 553
No 486
>PRK06175 L-aspartate oxidase; Provisional
Probab=88.87 E-value=1.4 Score=44.16 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=42.7
Q ss_pred eecCCc-chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEE-eCCCc--EEEcCEEEE
Q 014883 273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL 332 (416)
Q Consensus 273 ~p~gG~-~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-l~~G~--~i~Ad~VI~ 332 (416)
++.... ..+.+.|.+.++. .|++|+++++|+.|..+ ++++++|. ..+++ .+.|+.||+
T Consensus 121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 344433 3688888877764 59999999999999876 67777865 33554 589999994
No 487
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.78 E-value=0.56 Score=44.29 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
+|.|||.|..|...|..|++.|++|.+++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999864
No 488
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.77 E-value=0.47 Score=47.87 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.+|.|||.|.-|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998654
No 489
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.71 E-value=0.81 Score=40.23 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=29.6
Q ss_pred cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 014883 22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (416)
Q Consensus 22 ~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~ 54 (416)
...++|+|+ |-.|..+|..|++.|++|.++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999996 999999999999999999999765
No 490
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.63 E-value=0.5 Score=51.33 Aligned_cols=37 Identities=19% Similarity=-0.019 Sum_probs=32.6
Q ss_pred CCcccEEEECCChhHHHH-HHHHhhCCCeEEEEccCCC
Q 014883 20 PTAFDLIVIGTGLPESVI-SAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 20 ~~~~DViIIGaGl~GL~a-A~~La~~G~~V~vlE~~~~ 56 (416)
++...+.|||.|-+|++| |..|++.|++|.+.|.+..
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~ 39 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG 39 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence 344569999999999999 9999999999999998754
No 491
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=88.52 E-value=0.47 Score=50.48 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La-~~G~~V~vlE~~~~ 56 (416)
..|.|||||..|...|..++ ++|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46999999999999999998 59999999998853
No 492
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=88.48 E-value=1.5 Score=40.79 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI~ 332 (416)
..+-+.|.+.+++.|+++++++.|+++..+ ++.+ .|.+. ++++++||.||.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~ 142 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG 142 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence 356677778888899999999999999886 4442 34433 456899999993
No 493
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.41 E-value=0.55 Score=51.67 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (416)
.+|||||+|..|+-+|..+.+.|.+|+++.++++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 4799999999999999999999999999998864
No 494
>PRK12839 hypothetical protein; Provisional
Probab=88.39 E-value=1.5 Score=45.71 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc-EEE-cCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ-DIL-SHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G~-~i~-Ad~VI~ 332 (416)
..|...|.+.+++.|++|+++++|++|+++ ++|++++|... +|+ .+. ++.||+
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~-~~g~V~GV~~~~~~g~~~i~aak~VVL 270 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTD-KNGRVTGVRVQGPDGAVTVEATRGVVL 270 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEeCCEEEE
Confidence 467888888889999999999999999875 36888898643 444 344 477884
No 495
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.33 E-value=1.5 Score=45.42 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad-~VI~ 332 (416)
..+...|.+.++..|++|+++++|++|+.+ ++++++|... +|+ .++|+ .||+
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl 263 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL 263 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence 457788888888899999999999999986 7888888654 454 47886 4774
No 496
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.32 E-value=0.69 Score=43.49 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~ 55 (416)
..|+|||+|-+|-++|..|++.|. +|.|++++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999996 799998863
No 497
>PRK07190 hypothetical protein; Provisional
Probab=88.28 E-value=1.5 Score=44.73 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (416)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (416)
.+-+.|.+.+++.|++|+++++|+.|.++ ++. +.|++.+|++++|+.|| ++.
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~--~~~-v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELN--QAG-CLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCe-eEEEECCCcEEEeCEEEECCC
Confidence 45556666777889999999999999987 333 34556788899999999 443
No 498
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=88.21 E-value=1.2 Score=44.00 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (416)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (416)
..|.+.+....+..|.++++++.+.++.-+ .+|++..|.+.+|+++.||.||+
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~-~~Gev~~V~l~dg~~l~adlvv~ 307 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGN-SDGEVSEVKLKDGKTLEADLVVV 307 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccC-CCCcEEEEEeccCCEeccCeEEE
Confidence 467777888889999999999999999887 37899999999999999999993
No 499
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.15 E-value=0.98 Score=41.55 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.4
Q ss_pred cccEEEECC-C-hhHHHHHHHHhhCCCeEEEEccCC
Q 014883 22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 22 ~~DViIIGa-G-l~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
...++|.|| | --|...|..|+++|++|++++++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457999997 5 478999999999999999987653
No 500
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.06 E-value=0.6 Score=47.36 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (416)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (416)
..|+|+|+|..|+.|+..+...|.+|.++|.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 589999999999999999999999999999876
Done!