BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014886
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp.
pdb|3U9I|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp
Length = 393
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 201/374 (53%), Gaps = 18/374 (4%)
Query: 37 FKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL 96
F+++T T+ PL++PL PF IA+ + N+ + +EL++G G+GEA
Sbjct: 20 FQSMTAPTTIRALTVA--PLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPF 77
Query: 97 PHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDA 156
P E Q A A A L E + + LPG S R A+E A++DA
Sbjct: 78 PAFNGETQDMAHA-AILAARSLVEGADVREWRRIALALPALPGMT-GSARCAIETAILDA 135
Query: 157 VAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------ 210
+ + +PLW FGG + ++ TD+TI S AA A +G TT+K+K+G
Sbjct: 136 LTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA 195
Query: 211 ---KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
+ ++ D+ + AIR V P + ILD N GY +A+ +L+ L G+ P LFEQPV
Sbjct: 196 TTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVPALFEQPVA 255
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE 327
+DD EGL ++ + V VAADES S D ++ + DV+NIKL K G++ AL+
Sbjct: 256 KDDEEGLRRLTATRR----VPVAADESVASATDAARLARNAAVDVLNIKLMKCGIVEALD 311
Query: 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS 387
I + R +GL+LMIGGMVE+ LAM + +AG G F+F+DLDTPL L+E+P G
Sbjct: 312 IAAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFRFVDLDTPLFLAENPFDGGMTYH 371
Query: 388 GAVYKFTNAR-GHG 400
G T GHG
Sbjct: 372 GGTIDLTLIEAGHG 385
>pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
Length = 365
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 195/356 (54%), Gaps = 11/356 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q +N+PL PF IA+ NV ++++L++G +G GEA P V+ E Q
Sbjct: 7 IQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQ--- 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASV--RAAVEMALIDAVAKSVSMPL 165
S A E L+ A + +A +L + + R +EMA++DA+ + MPL
Sbjct: 64 -TGTSAAIERLQSHLLGADVRGWRKLAAMLDHAEHEAAAARCGLEMAMLDALTRHYHMPL 122
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAIR 224
FGGVS + TD+TI AA A +G ++K+K G ++ D+ LRAI
Sbjct: 123 HVFFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIH 182
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
P + I+D N GY + A+ + VLFEQP+ R+DW G+ V+ +
Sbjct: 183 QAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQVTA----Q 238
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344
G +VAADES RS DV +I + A VINIKL K GV L++I + +A+GL LMIGGM
Sbjct: 239 SGFAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGGM 298
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
VE+ LAM F+ +L+AG G F FIDLDTPL ++E P + G+ +G + + GHG
Sbjct: 299 VESILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHG 354
>pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM
CELLULOSUM
pdb|3S5S|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM
CELLULOSUM
Length = 389
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 192/355 (54%), Gaps = 7/355 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R L++PL PF IA ++ N+ + +EL++G +G+GEA LP E Q +
Sbjct: 7 IRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGS 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
A E + S A A +V + + R A+E A++DA+ K MPLW
Sbjct: 67 RAAAVSLREAVVGSDARAWRAVARALREASG-GGAGAARCAIETAILDALTKRAGMPLWA 125
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK-EDIEVLRAIRAV 226
FGG +TTDITI SP A E A + GF LK+KVG L D + AI A
Sbjct: 126 FFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAA 185
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
P +S ILD N G EA+ ++ +G L EQPV RDDW+G+ V+ + G
Sbjct: 186 APGASLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEVTR----RAG 241
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 346
V VAADES S +DV ++ A V+NIKL K G+ AL+I V RA+GL LMIGGMVE
Sbjct: 242 VDVAADESAASAEDVLRVAAERAATVVNIKLMKGGIAEALDIAAVARAAGLGLMIGGMVE 301
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR-GHG 400
+ LAM + +AGLG F F+DLDTPL L+E+P G+ G R GHG
Sbjct: 302 SVLAMTASACFAAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHG 356
>pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase
pdb|1JPM|B Chain B, L-ala-d/l-glu Epimerase
pdb|1JPM|C Chain C, L-ala-d/l-glu Epimerase
pdb|1JPM|D Chain D, L-ala-d/l-glu Epimerase
pdb|1TKK|A Chain A, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|B Chain B, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|C Chain C, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|D Chain D, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|E Chain E, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|F Chain F, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|G Chain G, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|H Chain H, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
Length = 366
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 188/360 (52%), Gaps = 20/360 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI-- 62
Query: 110 KASEACEVLKESPAMALGSVFGV------VAGLLPGHQFASVRAAVEMALIDAVAKSVSM 163
S VLK PA+ S+ G + LL G+ S +AAVEMAL D A+ +
Sbjct: 63 -ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNM--SAKAAVEMALYDGWAQMCGL 117
Query: 164 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRA 222
PL+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++
Sbjct: 118 PLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQE 177
Query: 223 IRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
IR V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+
Sbjct: 178 IRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVT--- 234
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
D + ADES + ++++ AD+INIKL K G+ GA +I + A G+ M
Sbjct: 235 -DATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECM 293
Query: 341 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+G M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 294 VGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
>pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|B Chain B, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|C Chain C, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|D Chain D, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|E Chain E, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|F Chain F, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|G Chain G, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|H Chain H, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|I Chain I, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|J Chain J, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|K Chain K, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|L Chain L, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|M Chain M, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|N Chain N, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|O Chain O, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|P Chain P, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DEQ|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DER|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DES|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
Length = 345
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 7/316 (2%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E++
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI 182
+F + L F S++AAV+ A +DA+++ + + L GG + I TD T+
Sbjct: 79 VRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTV 135
Query: 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN GY
Sbjct: 136 GIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQ 195
Query: 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302
+EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+ DV
Sbjct: 196 KEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKFDVM 251
Query: 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362
++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+ L + + H + G G
Sbjct: 252 RLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTG 311
Query: 363 CFKFIDLDTPLLLSED 378
F+F DLD+ L+L E+
Sbjct: 312 AFEFHDLDSHLMLKEE 327
>pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
Length = 345
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 169/316 (53%), Gaps = 7/316 (2%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E +
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREXITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI 182
+F + L F S++AAV+ A +DA+++ + + L GG + I TD T+
Sbjct: 79 VRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTV 135
Query: 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN GY
Sbjct: 136 GIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANXGYTQ 195
Query: 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302
+EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+ DV
Sbjct: 196 KEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKFDVX 251
Query: 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362
++VK D +NIKL K G+ AL I+E+ +SGL L IG E+ L + + H + G G
Sbjct: 252 RLVKEEAVDYVNIKLXKSGISDALAIVEIAESSGLKLXIGCXGESSLGINQSVHFALGTG 311
Query: 363 CFKFIDLDTPLLLSED 378
F+F DLD+ L L E+
Sbjct: 312 AFEFHDLDSHLXLKEE 327
>pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q4D|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
Length = 368
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 170/338 (50%), Gaps = 13/338 (3%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF I+ L NV +RI ++G +G+GE + E TA + +
Sbjct: 13 VKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKG 72
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI- 176
L + + + S ++ ++ G+ + +++A +AL D A+ +PL+ GG + I
Sbjct: 73 LIGTSCLDIVSNSLLMDAIIYGN--SCIKSAFNIALYDLAAQHAGLPLYAFLGGKKDKII 130
Query: 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILD 235
TD T+ I P + A A + +K GF +K+KVG + + D+E +R IR DS + +D
Sbjct: 131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREAAGDSITLRID 190
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
AN+G+ + A+E L L + E+PV R+ + L + + + + ADESC
Sbjct: 191 ANQGWSVETAIETLTLLEPYNIQHC--EEPVSRNLYTALPKIRQACR----IPIMADESC 244
Query: 296 RSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354
+ D +++++ D N+KL+K G+ AL II + + + + +GG +E+RL A
Sbjct: 245 CNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTAA 304
Query: 355 GHLSAGLGCFKFIDLDTPLLLSEDPVLDG--YEVSGAV 390
H++ + D DTPL+ DPV G Y+ G +
Sbjct: 305 AHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQRGII 342
>pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JW7|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JZU|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3K1G|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3KUM|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
Length = 354
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 157/314 (50%), Gaps = 36/314 (11%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+++ R + L FTIA ++ ++ + IE G VG+GE +T E
Sbjct: 3 IKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGE----T 58
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLP-------------GHQFASVRAAVEMALI 154
+ E E+ ++ + GL P + +AA+++A
Sbjct: 59 LAGTLETIELFGQA-----------IIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACY 107
Query: 155 DAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK 214
D + + +PL++L GG N + TDIT+ I P A+ A + K GF TLK+KVG ++
Sbjct: 108 DLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIE 167
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
DI ++AIR AV D LDAN+ + P++AV+ ++ L + + L EQPV R D EG
Sbjct: 168 ADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIE--LVEQPVKRRDLEG 225
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVV 332
L +V+ + ++ ADESC D ++VK DVINIKL K G+ AL+I ++
Sbjct: 226 LKYVTS----QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQIC 281
Query: 333 RASGLNLMIGGMVE 346
+G+ MIG M E
Sbjct: 282 ETAGIECMIGCMAE 295
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 167/329 (50%), Gaps = 15/329 (4%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM--VKASE 113
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++ +K +
Sbjct: 11 IRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTL 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-V 172
++ ++P M + + ++ + G + +AA+++A D + K ++ P+++L GG
Sbjct: 71 TPALIGQNP-MNIEKIHDMMDNTIYG--VPTAKAAIDIACFDIMGKKLNQPVYQLIGGRY 127
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSS 231
+ I P AE A+ ++G+ + K+KVG N+KED++ + A+R V D +
Sbjct: 128 HEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGNDIA 187
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+D N+G+K + L L +G + EQPV DD + + H+ + K + +
Sbjct: 188 IRVDVNQGWK--NSANTLTALRSLGHLNIDWIEQPVIADDIDAMAHI----RSKTDLPLM 241
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRL 349
DE +S ++++I+K AD +NIKL K G+ A+++ +G+ +G MVE+ +
Sbjct: 242 IDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSV 301
Query: 350 AMGFAGHLSAGLGCFKFIDLDTPLLLSED 378
A H++ ++L PL ++D
Sbjct: 302 ASSAGFHVAFSKKIITSVELTGPLKFTKD 330
>pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate Bound, No Mg
pdb|3R0K|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate Bound, No Mg
pdb|3R0U|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate And Mg Complex
pdb|3R0U|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate And Mg Complex
pdb|3R10|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg Complex
pdb|3R10|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg Complex
pdb|3R11|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg And Fumarate Complex
pdb|3R11|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg And Fumarate Complex
pdb|3R1Z|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Complex With L- Ala-L-Glu And L-Ala-D-Glu
pdb|3R1Z|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Complex With L- Ala-L-Glu And L-Ala-D-Glu
Length = 379
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 145/300 (48%), Gaps = 19/300 (6%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+ +PL F A + ++++A+ + L NG G+G AP +T + Q
Sbjct: 13 IKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGXQY------ 66
Query: 116 EVLKESPA-MALGSVFGVVAGLL----PGHQFASV-RAAVEMALIDAVAKSVSMPLWRLF 169
+++E A + LGS L F S + A+++A D +AK + + +L
Sbjct: 67 -IIREIFAPVILGSDLSDYKQTLELAFKKVXFNSAAKXAIDLAYHDLLAKEQDISVAKLL 125
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI-RAVHP 228
G +N+I TD++I + AE + + FT +K+K G + DI++L+A+
Sbjct: 126 GAKANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNEFSK 185
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+ F DAN+G+ + + +E++ + + + EQPV D + ++ + +
Sbjct: 186 NIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAXAEITKFS----NIP 241
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 347
V ADES D ++++ + INIKLAK G+L A +I ++ ++G++ +G E+
Sbjct: 242 VVADESVFDAKDAERVIDEQACNXINIKLAKTGGILEAQKIKKLADSAGISCXVGCXXES 301
>pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase
Length = 324
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 146/322 (45%), Gaps = 28/322 (8%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + G G GE P D AS +++
Sbjct: 15 PLHTPFVIARGSRSEARVVVV-ELEEEGIKGTGECTPYPRYGESD-------ASVMAQIM 66
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTIT 177
P + G + +LP + R A++ AL D A+ L L G + T+
Sbjct: 67 SVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPETVI 123
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L E + AIR PD++ I+DAN
Sbjct: 124 TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIVDAN 181
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 182 ESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADESCHT 233
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+ A
Sbjct: 234 RSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALP 291
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + F DLD P L+ D
Sbjct: 292 LVPQV---SFADLDGPTWLAVD 310
>pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
pdb|1WUF|B Chain B, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
Length = 393
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 17/303 (5%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQT 106
Q+A +PL+APF + L + I + G G+GE A LP T E +
Sbjct: 23 QKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSS 82
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
A++ E L + + + G++ A +AAVE+A+ DA AK L
Sbjct: 83 AILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNEMA--KAAVELAVWDAFAKMEKRSLA 140
Query: 167 RLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA 225
++ G +I ++I + E +L ++Y QG+ +KLK+ N +DI+ + A+R
Sbjct: 141 KMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAVRK 198
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI-AKDK 284
P S + DAN Y ++ + +L++L + + + EQP D+ V H + +
Sbjct: 199 SFPKLSLMADANSAYNREDFL-LLKELDQYDLE--MIEQPFGTKDF-----VDHAWLQKQ 250
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGG 343
+ DE+ RS+ DV++ IN+KLA+VG + AL+I E + + + GG
Sbjct: 251 LKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGG 310
Query: 344 MVE 346
M+E
Sbjct: 311 MLE 313
>pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Silicibacter Pomeroyi
Length = 378
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 150/325 (46%), Gaps = 23/325 (7%)
Query: 44 FTVDVQRAENRPLNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPHVTA 101
++ + R +++PL P+ ++ RL + ++ +++E G GWGE H
Sbjct: 1 MSLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYV 60
Query: 102 EDQQTAMVKASE--ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+ E A VL P L V + LPGH +A ++ ++MA D +
Sbjct: 61 PAHGPGIRAGIETMAPFVLGLDPRRLL-DVERAMDIALPGHLYA--KSPIDMACWDIAGQ 117
Query: 160 SVSMPLWRLFGGVSNT---ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKED 216
+ +P+ L GG S T I + + V E + +YR++G+ +K+G +++ D
Sbjct: 118 AAGLPIADLMGGGSRTPRPIASSVGAKSVE--ETRAVIDRYRQRGYVAHSVKIGGDVERD 175
Query: 217 IEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275
I +R + + P + D N G+ Q+A+ V+ ++ V +FEQP E L
Sbjct: 176 IARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQP-----GETLD 227
Query: 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRA 334
++ I + V+ DE +L D ++ + LA+V IKL +VG L A + ++
Sbjct: 228 DIAAI-RPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALT 286
Query: 335 SGLNLMIGGMVETRLAMGFAGHLSA 359
G+++ + + LA A HL+A
Sbjct: 287 HGIDMFVMATGGSVLADAEALHLAA 311
>pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
Length = 383
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 165/352 (46%), Gaps = 27/352 (7%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q+ E+R L+VPLI P AT+ + + + + L NG +G+GE P P E +
Sbjct: 8 IQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVE 67
Query: 106 T--AMVKASEACEVLKESPAMALGSVFGVVAGL---LPGHQFASVRAAVEMALIDAVAKS 160
T A+V A ++ A+ + G+ A L + ++A +AAV++A DA A+S
Sbjct: 68 TXKALVDGYLAPVLI----GRAVSELAGIXADLERVVARARYA--KAAVDVAXHDAWARS 121
Query: 161 VSMPLWRLFGGVSNTITTDITIPI-VSPAE--AAELASKYRKQGFTTLKLKVGK-NLKED 216
+++P+ L GG D+T + V P + AE+ + + G + KLK G + ED
Sbjct: 122 LNVPVRDLLGGTVRD-KVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKXGAGDPAED 180
Query: 217 I-EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275
V R V S +D N + + A+ L L E GV LFEQP DD E L
Sbjct: 181 TRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVE--LFEQPTPADDLETLR 238
Query: 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRA 334
++ + VSV ADES + + +VK ADVI +K K G+L + +I + A
Sbjct: 239 EITR----RTNVSVXADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEA 294
Query: 335 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYE 385
GL +E + + +A + +L P LL + ++ +E
Sbjct: 295 GGLACHGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFE 346
>pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|B Chain B, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|C Chain C, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|D Chain D, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|E Chain E, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RO6|B Chain B, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|A Chain A, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|C Chain C, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|D Chain D, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|E Chain E, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|F Chain F, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
Length = 356
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 156/359 (43%), Gaps = 28/359 (7%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + PL P+ IA +++++N+ + I ++G +G G A HVT E E
Sbjct: 9 RTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGE--------TLE 60
Query: 114 ACEVLKESPAMALGSVFGVVAGLLP--GHQFASVRAAV-------EMALIDAVAKSVSMP 164
AC + LG + G LP + A A +MAL D VA+ + +P
Sbjct: 61 ACHAALDHDR--LGWLMGRDIRTLPRLCRELAERLPAAPAARAALDMALHDLVAQCLGLP 118
Query: 165 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 224
L + G +++ T +TI I E A ++ GF LK+K+ + ++D E LR +
Sbjct: 119 LVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRLH 178
Query: 225 AVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ + +D N+ Y + + + E+G+ + P R DW L + +
Sbjct: 179 ETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIEQPFPAGRTDW--LRALPKAIRR 236
Query: 284 KFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 341
+ +AADES D + NIKL K G L A I + +G++LM
Sbjct: 237 R----IAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMW 292
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
G M E+R+++ A H + +++DLD L+ D G+ + + T G G
Sbjct: 293 GCMDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLG 351
>pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
Length = 381
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 165/354 (46%), Gaps = 32/354 (9%)
Query: 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE 102
+ T V++ E+ ++VP I P ++ + + V +R+ S+G G GEA + ++
Sbjct: 2 SLTATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYG 61
Query: 103 DQQTAMVKASEA---CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+ + ++ +LK PA L ++ + G + G+ FA ++A+E AL+DA K
Sbjct: 62 VESPEAISSAITHYLTPLLKGQPADNLNALTARMNGAIKGNTFA--KSAIETALLDAQGK 119
Query: 160 SVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAELASKYRKQGFTTLKLKV 209
++ +P+ L GG T +P++ AE +L ++ R + F KLK+
Sbjct: 120 ALGLPVSALLGGALQT-----ALPVLWTLASGDTAKDIAEGEKLLAEGRHRAF---KLKI 171
Query: 210 G-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G + L D+ RAI A+ +S +D N+ + + +L MGV L EQPV
Sbjct: 172 GARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVD--LIEQPVS 229
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-L 326
D L +S + ++ ADE+ + D ++ + +K+AK G + L
Sbjct: 230 AHDNAALVRLSQ----QIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVL 285
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 380
+ V +A+G+ L G M+E + + H + L ++ PLLL +D V
Sbjct: 286 ALARVAQAAGIGLYGGTMLEGTVGTVASLHAWSTLPLQWGTEMFGPLLLKDDIV 339
>pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|2QDD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|3FVD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
pdb|3FVD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
Length = 378
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 21/312 (6%)
Query: 56 LNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPH--VTAEDQQTAMVKA 111
L++PL P+ ++ RL D++++ +RI+ G GWGE H + A A
Sbjct: 13 LDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIA 72
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
+ A +L P +L V V+ LPGH + V++ ++MA D + + +PLW+L GG
Sbjct: 73 TLAPHLLGLDP-RSLDHVNRVMDLQLPGHSY--VKSPIDMACWDILGQVAGLPLWQLLGG 129
Query: 172 VSNT-ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAIRAVHPD 229
+ T + + +I +P + L ++ QG+ T K+ G + +DI + AI A PD
Sbjct: 130 EAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPD 189
Query: 230 SSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+ D N + P AVEVL + EQP + L +H+A+ +
Sbjct: 190 GHRVTFDVNRAWTPAIAVEVLNSVRARD----WIEQPC-----QTLDQCAHVAR-RVANP 239
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVET 347
+ DE D + + IK +VG L A +I + + G + I + T
Sbjct: 240 IMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDVGGT 299
Query: 348 RLAMGFAGHLSA 359
LA A HL+A
Sbjct: 300 ALADTAALHLAA 311
>pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis
pdb|3DG6|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
Length = 367
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 39/312 (12%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P ++P P A+ + E+V +R+ +G VG EAP P E QT +V E
Sbjct: 10 PFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGE-TQTGIVAVIEQ 68
Query: 115 C-------------EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
EV A +G+ + +AA++MA+ DA+ +S+
Sbjct: 69 YFAPALIGLTLTEREVAHTRMARTVGN--------------PTAKAAIDMAMWDALGQSL 114
Query: 162 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKN-LKEDIEV 219
+ + + GG ++ + + P + A + R+ G T K+KVG+ ++ D V
Sbjct: 115 RLSVSEMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAV 174
Query: 220 LRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHV 277
+RA+R D+ +D N G+ A E L + EM +LF E+ DD L
Sbjct: 175 VRALRERFGDAIELYVDGNRGWS---AAESLRAMREMADLDLLFAEELCPADDV--LSRR 229
Query: 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 337
+ + + ADES + DV + V G A I+IK A+ G G+ + + GL
Sbjct: 230 RLVG--QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGL 287
Query: 338 NLMIGGMVETRL 349
++++G ++ ++
Sbjct: 288 DMVMGNQIDGQI 299
>pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
Length = 397
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 148/322 (45%), Gaps = 14/322 (4%)
Query: 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGW---GEAPVLPHVT 100
++ + + E P++ P+ + + L +++ V +++ G VG G+
Sbjct: 1 MSLKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGE 60
Query: 101 AEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKS 160
+D T+M+ A +VL + + G + L + A +A V+ AL D V K
Sbjct: 61 TQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQA--KATVDFALHDLVGKR 118
Query: 161 VSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEV 219
+P+++L GG + I + + P AE A ++GF +KLK G LK DI +
Sbjct: 119 FGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAM 178
Query: 220 LRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+ + RAV D +D N + +A+ + L + ++ + EQP+ D +G+ +
Sbjct: 179 VAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKI--EQPLPAWDLDGMARL- 235
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 337
+ K + ADES + L D+ I+ AD + IK K G+L A + + R + L
Sbjct: 236 ---RGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANL 292
Query: 338 NLMIGGMVETRLAMGFAGHLSA 359
++ G MV + L A HL A
Sbjct: 293 PVICGCMVGSGLEASPAAHLLA 314
>pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
pdb|2ZC8|B Chain B, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
Length = 369
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 11/228 (4%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAE-AAELASKYRKQGFTT 204
+A +EMA D AK++ PLW++ GGV + +++ I E + ++ ++G+
Sbjct: 100 KAVLEMAFFDLWAKALGRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEGYRR 159
Query: 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
+KLK+ D EVL+A+R P+++ DAN Y + L++L E+ + + EQ
Sbjct: 160 IKLKIKPGW--DYEVLKAVREAFPEATLTADANSAYSLANLAQ-LKRLDELRLDYI--EQ 214
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 324
P+ DD L H + + + DES + +K ++ V N+K A++G G
Sbjct: 215 PLAYDDL--LDHAK--LQRELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHG 270
Query: 325 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT 371
+L + + ++G+ L +GGM+E + HL+ G K D+ +
Sbjct: 271 ESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLATLPGFTKPGDVSS 318
>pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
pdb|3QLD|B Chain B, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
Length = 388
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 138/319 (43%), Gaps = 54/319 (16%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVK--- 110
L++PL P A + + + + +++ ++G GW E L P T E TA V
Sbjct: 11 LSLPLKFPXRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVXLVH 70
Query: 111 ------------ASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
AS+ +V + AL V G + AA+E A+ D A
Sbjct: 71 HLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRXSV----------AAIEXAVWDWYA 120
Query: 159 KSVSMPLWRLFGGVSNTITTDITIP-------IVSPAEAAELASKYRKQGFTTLKLKVGK 211
PL L GG + + T+ ++ +AA +QGF +KLK+
Sbjct: 121 ARTGQPLVGLLGGGRDRVEVSATLGXSESLDVLIQSVDAAV------EQGFRRVKLKIAP 174
Query: 212 NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRD 269
D ++A+R +PD + DAN Y+P++A VL +L Y++ EQP+ D
Sbjct: 175 G--RDRAAIKAVRLRYPDLAIAADANGSYRPEDA-PVLRQLDAYDLQ----FIEQPLPED 227
Query: 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEI 328
DW L + + V DES RS+ ++K + A V+N+K ++G GA L
Sbjct: 228 DWFDLAKL----QASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRA 283
Query: 329 IEVVRASGLNLMIGGMVET 347
++V +G +GG ET
Sbjct: 284 LDVAGEAGXAAWVGGXYET 302
>pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|B Chain B, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|C Chain C, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|D Chain D, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 204
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLCTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 324
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PLA---WDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 325 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLSC-LSNFRL 319
>pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|B Chain B, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|C Chain C, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|D Chain D, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
Length = 375
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 204
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTCI--EQ 221
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 324
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PLA---WDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 325 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST-LSNFRL 319
>pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|B Chain B, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|C Chain C, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|D Chain D, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGH|A Chain A, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|B Chain B, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|C Chain C, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|D Chain D, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
Length = 375
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 204
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 324
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PL---AWDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 325 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST-LSNFRL 319
>pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|B Chain B, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|C Chain C, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|D Chain D, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1XPY|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
Length = 375
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 204
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 324
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PLA---WDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 325 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST-LSNFRL 319
>pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|B Chain B, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|C Chain C, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|D Chain D, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 12/223 (5%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 204
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADCQATVDLVRRHVEQGYRR 166
Query: 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
+KLK+ D++ +R R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRCTREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 324
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PL---AWDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 325 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST-LSNFRL 319
>pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|B Chain B, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|C Chain C, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|D Chain D, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|E Chain E, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|F Chain F, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|G Chain G, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|H Chain H, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
Length = 384
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 116/283 (40%), Gaps = 17/283 (6%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
V + RPL +PL P+ + + I IE +G VG GE V P T
Sbjct: 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTG---- 59
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAA------VEMALIDAVAK 159
TA + A ++ SP + + GH RAA ++ A D K
Sbjct: 60 TAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIXRAANQIFSGIDXAXWDLQGK 119
Query: 160 SVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIE 218
+P+ +L GG AE A A+ QG LKVG+ K D+E
Sbjct: 120 LAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLE 179
Query: 219 VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+ A+R D+ LDANEG+ +A+ KL + + EQP HV
Sbjct: 180 ITAAVRGEIGDARLRLDANEGWSVHDAINXCRKLEKYDIE--FIEQPTVSWSIPAXAHV- 236
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
++K G+ + AD++ +L DV +I + AD I I ++G
Sbjct: 237 ---REKVGIPIVADQAAFTLYDVYEICRQRAADXICIGPREIG 276
>pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 369
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 166/350 (47%), Gaps = 33/350 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASVRAAVEMALIDAVAKSV 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA K +
Sbjct: 63 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRL 117
Query: 162 SMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-L 213
+P+ L GG V+ T+ + T + AEA + R + F KLK+G N +
Sbjct: 118 GLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGANPV 172
Query: 214 KEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R +
Sbjct: 173 EQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRG 230
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEV 331
G ++ + + ADES S++D + A + +K+AK G A L ++
Sbjct: 231 GQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQI 286
Query: 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 287 AEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 336
>pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i
pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i
Length = 373
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 166/350 (47%), Gaps = 33/350 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 6 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 65
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASVRAAVEMALIDAVAKSV 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA K +
Sbjct: 66 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRL 120
Query: 162 SMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-L 213
+P+ L GG V+ T+ + T + AEA + R + F KLK+G N +
Sbjct: 121 GLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGANPV 175
Query: 214 KEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R +
Sbjct: 176 EQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRG 233
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEV 331
G ++ + + ADES S++D + A + +K+AK G A L ++
Sbjct: 234 GQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQI 289
Query: 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 290 AEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELIGPLLLTEEIV 339
>pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
Length = 373
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 166/350 (47%), Gaps = 33/350 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 6 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 65
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASVRAAVEMALIDAVAKSV 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA K +
Sbjct: 66 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRL 120
Query: 162 SMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-L 213
+P+ L GG V+ T+ + T + AEA + R + F KLK+G N +
Sbjct: 121 GLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGANPV 175
Query: 214 KEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R +
Sbjct: 176 EQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRG 233
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEV 331
G ++ + + ADES S++D + A + +K+AK G A L ++
Sbjct: 234 GQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQI 289
Query: 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 290 AEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 339
>pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v
pdb|3MUC|B Chain B, Muconate Cycloisomerase Variant I54v
Length = 369
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 166/350 (47%), Gaps = 33/350 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTVGGLAYGYESPE 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASVRAAVEMALIDAVAKSV 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA K +
Sbjct: 63 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRL 117
Query: 162 SMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-L 213
+P+ L GG V+ T+ + T + AEA + R + F KLK+G N +
Sbjct: 118 GLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGANPV 172
Query: 214 KEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R +
Sbjct: 173 EQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRG 230
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEV 331
G ++ + + ADES S++D + A + +K+AK G A L ++
Sbjct: 231 GQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQI 286
Query: 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 287 AEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 336
>pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|B Chain B, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|C Chain C, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|D Chain D, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|E Chain E, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|F Chain F, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|G Chain G, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|H Chain H, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
Length = 376
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 139/274 (50%), Gaps = 20/274 (7%)
Query: 57 NVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEA 114
++P++ P+ IA+ + + ++I +G +GWGE PV P A+
Sbjct: 21 DLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVL 80
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VS 173
L + A+ L + + LL GH +A ++A+++A+ D K + +P+ L GG ++
Sbjct: 81 ASGLAGAEALPL-PLHTRMDSLLCGHNYA--KSALDIAVHDLWGKRLGVPVHELLGGALT 137
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSF 232
+++++ ++ ++ P EAA A + +++G++ L++K+G + ++ DIE +R + +
Sbjct: 138 DSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGI 197
Query: 233 IL--DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSV 289
L D N G+ ++A+ + ++ P + EQP + +D E + + H A +
Sbjct: 198 ALAADGNRGWTTRDALRFSRECPDI---PFVMEQPCNSFEDLEAIRPLCHHA-------L 247
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323
DE SL+ V +L D +K++++G L
Sbjct: 248 YMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGL 281
>pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant
pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant
Length = 372
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 166/350 (47%), Gaps = 33/350 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 5 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 64
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASVRAAVEMALIDAVAKSV 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA K +
Sbjct: 65 GIKANIDAHL---APALIGLAADNINAAMLKLDALAKGNTFA--KSGIESALLDAQGKRL 119
Query: 162 SMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-L 213
+P+ L GG V+ T+ + T + AEA + R + F KLK+G N +
Sbjct: 120 GLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGANPV 174
Query: 214 KEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
+++++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R +
Sbjct: 175 EQNLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRG 232
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEV 331
G ++ + + ADES S++D + A + +K+AK G A L ++
Sbjct: 233 GQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQI 288
Query: 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 289 AEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 338
>pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate
Lactonizing Enzyme
Length = 370
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAEL 193
S +AA+++AL D A+++++ + L GG T +IPI A E+
Sbjct: 99 SAKAAIDIALHDLKARALNLSIADLIGGTMRT-----SIPIAWTLASGDTARDIDSALEM 153
Query: 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEK 251
R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A + +
Sbjct: 154 IETRRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPR 210
Query: 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311
L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ + + D
Sbjct: 211 LEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDHAVD 264
Query: 312 VINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
++KL + G+ L++ V A+G++ G M+++ + A H+ A L +
Sbjct: 265 AFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPY 320
>pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJB|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJC|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJD|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
Length = 368
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 144/310 (46%), Gaps = 31/310 (10%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTA-- 107
E R + +PL+APF + E + +R G GWGE + P ++E A
Sbjct: 7 ELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEH 65
Query: 108 -----MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
++ A A E + + L + F GH+ A + A+EMA++DA ++
Sbjct: 66 VLRHYLIPALLAAEDITAAKVTPLLAKF-------KGHRMA--KGALEMAVLDAELRAHE 116
Query: 163 MPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLR 221
G V +++ +++ I+ + ++ Y +G+ +KLK+ D+E +R
Sbjct: 117 RSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGW--DVEPVR 174
Query: 222 AIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
A+R D + +DAN Y +A + L +L G+ +L EQP+ +D LGH + +
Sbjct: 175 AVRERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGL--LLIEQPLEEEDV--LGH-AEL 228
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339
A+ + + DES S +K ++NIK +VG L A + +V A G+ +
Sbjct: 229 AR-RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPV 287
Query: 340 MIGGMVETRL 349
GGM+ET L
Sbjct: 288 WCGGMIETGL 297
>pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
pdb|2PMQ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
Length = 377
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 136/274 (49%), Gaps = 20/274 (7%)
Query: 57 NVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEA 114
++P++ P+ IA+ + + ++I +G +GWGE PV P A+
Sbjct: 14 DLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVL 73
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VS 173
L + A+ L + LL GH +A ++A+++A+ D K + +P+ L GG ++
Sbjct: 74 ASGLAGAEALPL-PLHTRXDSLLCGHNYA--KSALDIAVHDLWGKRLGVPVHELLGGALT 130
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSF 232
+++++ ++ + P EAA A + +++G++ L++K+G + ++ DIE +R + +
Sbjct: 131 DSVSSYYSLGVXEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGI 190
Query: 233 IL--DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSV 289
L D N G+ ++A+ + ++ P + EQP + +D E + + H A +
Sbjct: 191 ALAADGNRGWTTRDALRFSRECPDI---PFVXEQPCNSFEDLEAIRPLCHHA-------L 240
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323
DE SL+ V +L D K++++G L
Sbjct: 241 YXDEDGTSLNTVITAAATSLVDGFGXKVSRIGGL 274
>pdb|4IZG|A Chain A, Crystal Structure Of An Enolase (mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (target
Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine
(product)
pdb|4IZG|B Chain B, Crystal Structure Of An Enolase (mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (target
Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine
(product)
Length = 391
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 16/267 (5%)
Query: 62 APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEACEVLKE 120
P+TIA+S + ++ ++I +G GWGE PV P A +E L
Sbjct: 40 GPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLIG 99
Query: 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTD 179
+ + + + GLL GH +A +AA+++A D + K + + L GGV + + +
Sbjct: 100 ANPLQPLVLRRRMDGLLCGHNYA--KAAIDIAAYDLMGKHYGVRVADLLGGVAAERVPSY 157
Query: 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAI--RAVHPDSSFILDA 236
I P E A +A++ +GF L++K+ G+ ++ DIE +R + R + +D
Sbjct: 158 YATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVDG 217
Query: 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR 296
N ++A+ + + E+ P + EQP + L ++ I + + + DES
Sbjct: 218 NRSLPSRDALRLSRECPEI---PFVLEQPCNT-----LEEIAAI-RGRVQHGIYLDESGE 268
Query: 297 SLDDVKKIVKGNLADVINIKLAKVGVL 323
L V + L D +KL ++G L
Sbjct: 269 DLSTVIRAAGQGLCDGFGMKLTRIGGL 295
>pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
Length = 388
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 127/297 (42%), Gaps = 33/297 (11%)
Query: 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA 101
Q + + R E P+ PL F + + + R+ G +G EA T
Sbjct: 16 QAHGLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIG--EA-----YTG 68
Query: 102 EDQQTAM----VKASEACEVLKESPAMAL----GSVFGVVAGLLPGHQFASVR-AAVEMA 152
++ +T + E L AMA+ S + V +L + V AAV A
Sbjct: 69 DEHETMFDIDRIIHEELAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLGLVALAAVNTA 128
Query: 153 LIDAVAKSVSMPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTTLK 206
+ DAV K++ MPLW+L+GG N + I I P+ S A+ Y++ G +K
Sbjct: 129 IWDAVGKALKMPLWKLWGGYRNELPM-IAIGGYYGEPLGSIADEMH---NYQELGLAGVK 184
Query: 207 LKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
KVG + ED + A R D I +DAN+GYKP AV++ ++ ++ + FE+
Sbjct: 185 FKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIR--WFEE 242
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
PV +W + + V V A ++ S + +++ DV N + G
Sbjct: 243 PV---EWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSG 296
>pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From
Azorhizobium Caulinodans
Length = 377
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 133/303 (43%), Gaps = 23/303 (7%)
Query: 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGV 132
V+ V + + ++G VGWGEA T + ++ +P + +
Sbjct: 34 SVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAAFSALDIYLRPLILGAPIKRVRELMAR 93
Query: 133 VAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAA 191
+ +L GH +AAVEMAL+D + K+ + + L GG V + I ++ I P A
Sbjct: 94 MDKMLVGH--GEAKAAVEMALLDILGKATGLSVADLLGGRVRDRIP--LSFSIADPDFDA 149
Query: 192 ELASKYRKQ---GFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAV 246
+L + R G T K+K G K E++ +L +R + LD N+ P A+
Sbjct: 150 DL-ERMRAMVPAGHTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAM 208
Query: 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306
++L + P EQPV R + + + + ADESC D+ ++V+
Sbjct: 209 KILRDVD--AFRPTFIEQPVPRRHLDAMAGFAA----ALDTPILADESCFDAVDLMEVVR 262
Query: 307 GNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG----- 360
AD I++K+ K G++ A ++ + +GL G + E +A+ L A
Sbjct: 263 RQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAAGTQLIAATPGIS 322
Query: 361 LGC 363
LGC
Sbjct: 323 LGC 325
>pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|B Chain B, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|C Chain C, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|D Chain D, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
Length = 329
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 114/237 (48%), Gaps = 19/237 (8%)
Query: 144 SVRAAVEMALIDAVAK-SVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGF 202
+ R AV+ AL D AK S ++ G + + T TI + P A A G
Sbjct: 89 AARNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMA--AKTAENAGR 146
Query: 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262
LK+K G +D LRA+RA P++ I+DANEG+ L+ E+ ++ L
Sbjct: 147 PLLKIKTGT--ADDEARLRAVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKIS--LI 202
Query: 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV 322
EQP+ G + +A+ + V + ADES S +D+ + + D INIKL K G
Sbjct: 203 EQPLP------AGKDAMLARIEHPVLICADESVHSTEDLAGLR--DRYDAINIKLDKTGG 254
Query: 323 LG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 378
L AL + G +M+G M+ T L M A ++ G F DLD PLLL+ED
Sbjct: 255 LTEALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGTA---FADLDGPLLLAED 308
>pdb|4E8G|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (Target
Nysgrc-012907) With Bound Mg
pdb|4E8G|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (Target
Nysgrc-012907) With Bound Mg
Length = 391
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 16/267 (5%)
Query: 62 APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEACEVLKE 120
P+TIA+S + ++ ++I +G GWGE PV P A +E L
Sbjct: 40 GPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEXAPGLIG 99
Query: 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTD 179
+ + + GLL GH +A +AA+++A D K + + L GGV + + +
Sbjct: 100 ANPLQPLVLRRRXDGLLCGHNYA--KAAIDIAAYDLXGKHYGVRVADLLGGVAAERVPSY 157
Query: 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAI--RAVHPDSSFILDA 236
I P E A +A++ +GF L++K+ G+ ++ DIE +R + R + +D
Sbjct: 158 YATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVDG 217
Query: 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR 296
N ++A+ + + E+ P + EQP + L ++ I + + + DES
Sbjct: 218 NRSLPSRDALRLSRECPEI---PFVLEQPCNT-----LEEIAAI-RGRVQHGIYLDESGE 268
Query: 297 SLDDVKKIVKGNLADVINIKLAKVGVL 323
L V + L D KL ++G L
Sbjct: 269 DLSTVIRAAGQGLCDGFGXKLTRIGGL 295
>pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|B Chain B, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|C Chain C, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|D Chain D, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
Length = 368
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 143/310 (46%), Gaps = 31/310 (10%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTA-- 107
E R + +PL+APF + E + +R G GWGE + P ++E A
Sbjct: 7 ELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEH 65
Query: 108 -----MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
++ A A E + + L + F GH+ A + A+EMA++DA ++
Sbjct: 66 VLRHYLIPALLAAEDITAAKVTPLLAKFK-------GHRMA--KGALEMAVLDAELRAHE 116
Query: 163 MPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLR 221
G V +++ +++ I+ + ++ Y +G+ +KLK+ D+E +R
Sbjct: 117 RSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGW--DVEPVR 174
Query: 222 AIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
A+R D + +DAN Y +A + L +L G+ +L EQP+ +D LGH + +
Sbjct: 175 AVRERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGL--LLIEQPLEEEDV--LGH-AEL 228
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
A+ + + DES S +K ++NIK +V G L A + +V A G+ +
Sbjct: 229 AR-RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPV 287
Query: 340 MIGGMVETRL 349
G M+ET L
Sbjct: 288 WCGDMIETGL 297
>pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Disordered Loops
pdb|4HPN|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Ordered Loops
Length = 378
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 30/223 (13%)
Query: 60 LIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQTAMVKASEACEV 117
L PF A+ R D+ +V + IE +G VGWGE P P+ A+V+A +
Sbjct: 15 LDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPARPN-------AAVVQAYSGW-L 66
Query: 118 LKESPAMALGSVFGVVAGLL--PGHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGG-- 171
+ + P ++ V+ L G + S+ A +++AL D K + L GG
Sbjct: 67 IGQDPRQTE-KIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRW 125
Query: 172 -------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 224
+ + D + VS A+E+A + R +GF K+K+G ++ED+ V+ A+R
Sbjct: 126 RESVRAYATGSFKRD-NVDRVSD-NASEMAER-RAEGFHACKIKIGFGVEEDLRVIAAVR 182
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 266
A+ PD ++DAN GY EA+ + ++ G+ FE+PV
Sbjct: 183 EAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGID--WFEEPV 223
>pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate
Cycloisomerase
Length = 370
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 28/280 (10%)
Query: 143 ASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAE 192
AS +AAVEMAL+D A+++ + + L GG + IPI A E
Sbjct: 98 ASAKAAVEMALLDLKARALGVSIAELLGGPLRS-----AIPIAWTLASGDTKRDLDSAVE 152
Query: 193 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLE 250
+ + R F K+K+G ++ ++D+ + A+ +++ +D N+ + Q A +
Sbjct: 153 MIERRRHNRF---KVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIP 209
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310
+L +GV L EQPV R++ + L +S D V++ ADES +L + +
Sbjct: 210 ELEALGVE--LIEQPVGRENTQALRRLS----DNNRVAIMADESLSTLASAFDLARDRSV 263
Query: 311 DVINIKLAKVGVLGALE-IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-ID 368
DV ++KL +G + A + I V ASG+ G M+++ + A L + + F +
Sbjct: 264 DVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCE 323
Query: 369 LDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408
L P +L++ + E+ + GHG L D +
Sbjct: 324 LIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363
>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
Length = 428
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 127/305 (41%), Gaps = 31/305 (10%)
Query: 35 FSFKNLTQT---FTVDVQRAENRPLN--VPLIAPFTIATSRLDQVENVAIRIELSNGCVG 89
S K TQ + + + PL+ +P T+ + + + IR+E S G G
Sbjct: 25 LSIKRFTQNSRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITG 84
Query: 90 WGEA---------PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGH 140
+GEA L H T M KA++ + M L S G+ AG
Sbjct: 85 YGEAHPGRSPGAITSLIHNTIAPMLIGM-KATDCVGAWQRVHRMQLSS-HGLGAGA---- 138
Query: 141 QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITT---DITIPIVSPAEAAELASKY 197
A + ++MAL D K+ +MPL+ L GG I I + AE A +Y
Sbjct: 139 --ALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAGGIALGYQPKESLAEEAQEY 196
Query: 198 RKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMG 256
+G+ LKL++G + DIE +R +R V D IL DAN Y +A VL L E
Sbjct: 197 IARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAE-- 254
Query: 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316
+ E+P +D+ V+ I V +AA E+ + + +++ V
Sbjct: 255 IQAGWLEEPFACNDFASYREVAKITPL---VPIAAGENHYTRFEFGQMLDAGAVQVWQPD 311
Query: 317 LAKVG 321
L+K G
Sbjct: 312 LSKCG 316
>pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
pdb|3H12|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
Length = 397
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 139 GHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITIPIVSP 187
GH+ + A V++AL D ++++ P+++L GG +++I D+T P
Sbjct: 98 GHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLT-----P 152
Query: 188 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFILDANEGYKPQEAV 246
+AA+ + + +QGFT KLKVG+ ++D LRA+R V D ++DAN+ +A+
Sbjct: 153 DQAADELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDAL 212
Query: 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306
+L L E G FE+P+ DD E GH A+ V +A E+ + + ++
Sbjct: 213 AMLRILDEAGC--YWFEEPLSIDDIE--GHRILRAQGT-PVRIATGENLYTRNAFNDYIR 267
Query: 307 GNLADVINIKLAKVG 321
+ DV+ ++ G
Sbjct: 268 NDAIDVLQADASRAG 282
>pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZY|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
pdb|3OZY|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
Length = 389
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 26/197 (13%)
Query: 139 GHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITIPIVSP 187
GH+ + A V++AL D ++++ P+++L GG +++I D+T P
Sbjct: 98 GHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLT-----P 152
Query: 188 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFILDANEGYKPQEAV 246
+AA+ + + +QGFT KLKVG+ ++D LRA+R V D ++DAN+ +A+
Sbjct: 153 DQAADELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDAL 212
Query: 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKI 304
+L L E G FE+P+ DD EG H G V +A E+ + +
Sbjct: 213 AMLRILDEAGC--YWFEEPLSIDDIEG-----HRILRAQGTPVRIATGENLYTRNAFNDY 265
Query: 305 VKGNLADVINIKLAKVG 321
++ + DV+ ++ G
Sbjct: 266 IRNDAIDVLQADASRAG 282
>pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp
Length = 381
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 155/357 (43%), Gaps = 49/357 (13%)
Query: 60 LIAPFTI------ATSRLDQ--------VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
+IA FT+ T+R D VE V +R++ +G VG+GEA P V
Sbjct: 9 IIAGFTLWHLSLPVTARRDHGIGSVAGAVEVVVLRLQADSGAVGYGEAS--PWVVF---- 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFA-----SVRAAVEMALIDAVAKS 160
T V+A+ A P + LG G A ++ + A +AA++ AL D A+
Sbjct: 63 TGSVEATYAALDRYLRP-LVLGRAVGDHAAIMEDARAAVAHCTEAKAALDTALYDLRARI 121
Query: 161 VSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG-KNLKEDI 217
+P+W L GG ++ I P +LA R Q +KLK G K+ D+
Sbjct: 122 AGVPVWALLGGRCRD-RIPLSCSIADPDFDKDLALMQRLQDDDVRIIKLKTGFKDHAFDM 180
Query: 218 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277
L +RA P +D N+G A+ + + P EQPV + GL +
Sbjct: 181 MRLERLRADFPAFDIRVDYNQGLHHDVALARVRDVATF--KPTFIEQPV-KAHLRGL--M 235
Query: 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASG 336
+ I +D V + ADES +D+ + +AD ++IK+ K G L A + + A G
Sbjct: 236 ARI-RDAVDVPLLADESIFGPEDMAE--HPEIADGVSIKIMKSGGLTRAQTVARMAAARG 292
Query: 337 LNLMIGGMVETRLAMGFAGHLSAG-----LGCFKFID----LDTPLLLSEDPVLDGY 384
L+ G M E LA H+ A LGC +F L +L + PV DG+
Sbjct: 293 LSAYGGDMFEAGLAHLAGAHMIAATPEITLGC-EFYQATYFLCDDILAAPFPVADGH 348
>pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
pdb|1WUE|B Chain B, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
Length = 386
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 41/319 (12%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAE- 102
+++Q E + +PL PF + RL++ I G G+GE P E
Sbjct: 20 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQET 79
Query: 103 --------DQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALI 154
Q + +EA E +E + ++F V G G +AA+E A+
Sbjct: 80 LVTERFIIQQHLIPLLLTEAIEQPQE-----VSTIFEEVKGHWMG------KAALETAIW 128
Query: 155 DAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYR---KQGFTTLKLKVGK 211
D AK L FG I I++ I + +L + + ++G+ +KLK+
Sbjct: 129 DLYAKRQQKSLTEFFGPTRRKIPVGISLGIQE--DLPQLLKQVQLAVEKGYQRVKLKIRP 186
Query: 212 NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRD 269
D+E + IR P+ ++DAN Y + + L++L Y++ + EQP D
Sbjct: 187 GY--DVEPVALIRQHFPNLPLMVDANSAYTLADLPQ-LQRLDHYQLA----MIEQPFAAD 239
Query: 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
D+ L H + + + DE+ RSL D + + IN+K+ +V G+ AL+I
Sbjct: 240 DF--LDHAQ--LQRELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKI 295
Query: 329 IEVVRASGLNLMIGGMVET 347
+ + L + +GGM E+
Sbjct: 296 AAFCQENDLLVWLGGMFES 314
>pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi
Length = 385
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA--SKYRKQGFT 203
+AA++ AL+D + ++P+W L GG T ++ I +P A++A + R G
Sbjct: 107 KAALDSALLDLAGRISNLPVWALLGGKCRD-TIPLSCSIANPDFDADIALMERLRADGVG 165
Query: 204 TLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262
+KLK G ++ DI L I P+ +D N+G + EAV + + + P
Sbjct: 166 LIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQF--QPDFI 223
Query: 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV 322
EQPV +E + + + V + ADES +D+ + + D ++IK+ K G
Sbjct: 224 EQPVRAHHFELMARLRGLTD----VPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGG 279
Query: 323 LG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG-----LGC 363
L A + + A GL G M E LA H+ A LGC
Sbjct: 280 LTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGC 326
>pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
pdb|3OP2|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
Length = 397
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 139 GHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITIPIVSP 187
GH+ + A V++AL D ++ + P+++L GG +++I D+T P
Sbjct: 98 GHRSVGIAAXSGVDIALWDLKGRAXNQPIYQLLGGKFHTRGVRAYASSIYWDLT-----P 152
Query: 188 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFILDANEGYKPQEAV 246
+AA+ + + +QGFT KLKVG+ ++D LRA R V D ++DAN+ +A+
Sbjct: 153 DQAADELAGWVEQGFTAAKLKVGRAPRKDAANLRAXRQRVGADVEILVDANQSLGRHDAL 212
Query: 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306
L L E G FE+P+ DD E GH A+ V +A E+ + + ++
Sbjct: 213 AXLRILDEAGC--YWFEEPLSIDDIE--GHRILRAQGT-PVRIATGENLYTRNAFNDYIR 267
Query: 307 GNLADVINIKLAKVG 321
+ DV+ ++ G
Sbjct: 268 NDAIDVLQADASRAG 282
>pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|B Chain B, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|C Chain C, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|D Chain D, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|E Chain E, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|F Chain F, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
Length = 398
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 33/297 (11%)
Query: 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA 101
Q + + R E P PL F + + R+ G +G EA T
Sbjct: 18 QAHGLTITRIETIPXVAPLAREFRGSHYHXTHRATIVTRVHTDAGIIG--EA-----YTG 70
Query: 102 EDQQTAM----VKASEACEVLKESPAMAL----GSVFGVVAGLLPGHQFASVR-AAVEMA 152
++ +T + E L A A+ S + V +L + V AAV A
Sbjct: 71 DEHETXFDIDRIIHEELAPTLIGQDAXAIERLWDSGYKVTFDILRDRRLGLVALAAVNTA 130
Query: 153 LIDAVAKSVSMPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTTLK 206
+ DAV K++ PLW+L+GG N + I I P+ S A+ Y++ G +K
Sbjct: 131 IWDAVGKALKXPLWKLWGGYRNELPX-IAIGGYYGEPLGSIADEXH---NYQELGLAGVK 186
Query: 207 LKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264
KVG + ED + A R D I +DAN+GYKP AV++ ++ ++ + FE+
Sbjct: 187 FKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIR--WFEE 244
Query: 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
PV +W + + V V A ++ S + + + DV N + G
Sbjct: 245 PV---EWHNDKRSXRDVRYQGSVPVCAGQTEFSASGCRDLXETGAIDVCNFDSSWSG 298
>pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
Length = 379
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 33/294 (11%)
Query: 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQ 104
++ + R E P PL F + + R+ G +G EA T ++
Sbjct: 2 SLTITRIETIPXVAPLAREFRGSHYHXTHRATIVTRVHTDAGIIG--EA-----YTGDEH 54
Query: 105 QTAM----VKASEACEVLKESPAMAL----GSVFGVVAGLLPGHQFASVR-AAVEMALID 155
+T + E L A A+ S + V +L + V AAV A+ D
Sbjct: 55 ETXFDIDRIIHEELAPTLIGQDAXAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWD 114
Query: 156 AVAKSVSMPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTTLKLKV 209
AV K++ PLW+L+GG N + I I P+ S A+ Y++ G +K KV
Sbjct: 115 AVGKALKXPLWKLWGGYRNELPX-IAIGGYYGEPLGSIADEXH---NYQELGLAGVKFKV 170
Query: 210 GK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G + ED + A R D I +DAN+GYKP AV++ ++ ++ + FE+PV
Sbjct: 171 GGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIR--WFEEPV- 227
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+W + + V V A ++ S + + + DV N + G
Sbjct: 228 --EWHNDKRSXRDVRYQGSVPVCAGQTEFSASGCRDLXETGAIDVCNFDSSWSG 279
>pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|B Chain B, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|C Chain C, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|D Chain D, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|E Chain E, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|F Chain F, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|G Chain G, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|H Chain H, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
Length = 390
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 15/202 (7%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD------ITIPIVSPAEAAELASKYRKQ 200
+ V+MA+ DA+A++ +MPL L GG ++ + P AEA EL ++ +
Sbjct: 129 SGVDMAVWDALARAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGT 188
Query: 201 GFTTLKLKVGKNLKE-DIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258
GF LKL++G++ DIE A+ AV D++ ++D N+G EA+ ++ ++G+
Sbjct: 189 GFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLE 248
Query: 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318
E+PV D+++G + H K + E+ ++ + ++ D++
Sbjct: 249 --WIEEPVVYDNFDGYAQLRHDLKTPLMIG----ENFYGPREMHQALQAGACDLVMPDFM 302
Query: 319 KV-GVLGALEIIEVVRASGLNL 339
++ GV G + V A G+ +
Sbjct: 303 RIGGVSGWMRAAGVAGAWGIPM 324
>pdb|2RDX|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
Length = 379
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 13/190 (6%)
Query: 136 LLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
L+ GH +A +A + A D + ++ P+W L GG + + P S AE
Sbjct: 96 LVQGHGYA--KAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAEL 153
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRA-IRAVHPDSSFILDANEGYKPQEAVEVLEKLY 253
+++R G+ ++KVG + + DI+ +RA + + P + DAN+G++ A+ +
Sbjct: 154 ARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATR 213
Query: 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313
++ + EQP +E V +A + DE L ++IV A++
Sbjct: 214 DLD---YILEQPCR--SYEECQQVRRVADQPMKL----DECVTGLHMAQRIVADRGAEIC 264
Query: 314 NIKLAKVGVL 323
+K++ +G L
Sbjct: 265 CLKISNLGGL 274
>pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
pdb|3T8Q|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
Length = 370
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 116/276 (42%), Gaps = 29/276 (10%)
Query: 79 IRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVA--- 134
+++ +G GWG+ AP +TA+ V + PA+ + + ++
Sbjct: 19 VKVTTDSGETGWGQVAPYYADITAQ------VLHRQVAPYALGKPALDIDYLVDIIPEKE 72
Query: 135 GLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTIT---TDITIPIVSPAEAA 191
PG ++ AL D + P+ L GG T+ + + I EAA
Sbjct: 73 HKFPGSYLRRALGGLDTALWDLRGRLEGKPVCELIGGTPGTVRAYGSSMKRDITPKDEAA 132
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDI--------EVLRAIRAVHPDS-SFILDANEGYKP 242
L+ + GF K ++G E++ IRA DS + ++DAN Y P
Sbjct: 133 RLSRLRDRFGFDAFKFRIGAECGRGQDEWPGRTEEIVPTIRAAMDDSVALLVDANSCYGP 192
Query: 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302
++A+EV + L + G++ +E+P ++E V+ + + V E L + +
Sbjct: 193 EQAIEVGKMLEQNGIS--HYEEPCPYWEYEQTQQVT----NALSIDVTGGEQDCELQNWR 246
Query: 303 KIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 337
++++ D++ + + G+ L + E+ +GL
Sbjct: 247 RMIEMKAVDIVQPDICYLGGITRTLRVAEMAHKAGL 282
>pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
pdb|3TCS|B Chain B, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
Length = 388
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 114/291 (39%), Gaps = 59/291 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE--SPAMALGS-------- 128
+R+ +G GWG Q + A C VL +P M LG
Sbjct: 39 VRVTTQDGAQGWG-------------QVSTYHADITCTVLHRQVAPWM-LGQDITDLDDL 84
Query: 129 --VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-------SNTITTD 179
+ PG A V+ A+ D K P+ + GG ++++ D
Sbjct: 85 LDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRD 144
Query: 180 ITIPIVSPAEAAELASKYRK-QGFTTLKLK----VGKN-------LKEDIEVLRAIRAVH 227
IT P + AE + R QGFT K++ VG+N +E I +R R +
Sbjct: 145 IT-----PRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMR--RELG 197
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
D ++DAN Y P A+EV L + G FE+P WE L + D +
Sbjct: 198 DDVDLLIDANSCYTPDRAIEVGHMLQDHGF--CHFEEPCPY--WE-LAQTKQVT-DALDI 251
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 337
V E L ++++ D++ + + G+ L ++E+ RA+GL
Sbjct: 252 DVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGL 302
>pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|3CK5|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
Length = 371
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 127/290 (43%), Gaps = 39/290 (13%)
Query: 48 VQRAENRPLNVPLIAPFTIAT-SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA----- 101
++R +PL T +T E + +RIE S+G G G + H A
Sbjct: 4 IERVRTDLYRIPLPTRLTDSTHGAXXDFELITVRIEDSDGATGLGYTYTVNHGGAAVATX 63
Query: 102 --EDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
+D + ++ A +E E + +S L AG GH +++ +AV++AL D
Sbjct: 64 VDKDLRGCLLGADAEQIEKIWQSXWWRLH-----YAGR-GGHATSAI-SAVDIALWDLKG 116
Query: 159 KSVSMPLWRLFGGVSNTITT-----DITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N 212
PLW+LFGG + D+ +P+ A+ A ++ GF +K KVG+ +
Sbjct: 117 IRARTPLWKLFGGYDPVVPVYAGGIDLELPV---ADLKTQADRFLAGGFRAIKXKVGRPD 173
Query: 213 LKEDIEVLRAIRAVHPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
LKED++ + A+R H SF L DAN + A+ L + E+P DD
Sbjct: 174 LKEDVDRVSALRE-HLGDSFPLXVDANXKWTVDGAIRAARALAPFDLH--WIEEPTIPDD 230
Query: 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK-GNLA----DVINI 315
G + + G ++A E+ +L D V+ G+L DV NI
Sbjct: 231 LVGNARIVR----ESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNI 276
>pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3CT2|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3DGB|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
Length = 382
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 156/345 (45%), Gaps = 27/345 (7%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ E +++P I P +A + V IR+ ++G G GE+ + + ++
Sbjct: 8 IESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPD 67
Query: 108 MVKASE---ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+K + +L A + + + + G+ FA ++ +E AL+DA K + +P
Sbjct: 68 SIKTNIDRFVAPLLIGQDASNINAAMLRLEQSIRGNTFA--KSGIESALLDAQGKRLGLP 125
Query: 165 LWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKED 216
+ L GG V+ T+ + T + AEA ++ R + F KLK+G + D
Sbjct: 126 VSELLGGRVRDALPVAWTLASGDTAKDI--AEAQKMLDLRRHRIF---KLKIGAGEVDRD 180
Query: 217 IEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275
+ + AI+ DS+ + +D N+ + A+ L G+ L EQP+ R++ G+
Sbjct: 181 LAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGID--LIEQPISRNNRAGMV 238
Query: 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEVVRA 334
++ + + ADES ++D + + A V +K+AK G A L + A
Sbjct: 239 RLNASSP----APIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEA 294
Query: 335 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSED 378
+G+ L G M+E + + H L + +L PLLL+ED
Sbjct: 295 AGIGLYGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTED 339
>pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase
Superfamily Member 1 (Enosf1)
Length = 441
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
+L ++ K G+T K+KVG +L++D+ + IR + P+ + ++DAN+ + EAVE +
Sbjct: 207 QLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMS 266
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVKKIVKGN 308
KL + P+ E+P DD LGH + I+K G+ +A E C + K++++
Sbjct: 267 KLAKF--KPLWIEEPTSPDD--ILGHAT-ISKALVPLGIGIATGEQCHNRVIFKQLLQAK 321
Query: 309 LADVINIKLAKVG 321
+ I ++G
Sbjct: 322 ALQFLQIDSCRLG 334
>pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|B Chain B, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|C Chain C, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|D Chain D, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|E Chain E, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|F Chain F, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|G Chain G, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|H Chain H, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
Length = 412
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 26/266 (9%)
Query: 75 ENVAIRIELSNGCVGWGEAP--VLPHVTAEDQQTAMVKASEACEVLKESPA----MALGS 128
+V +RIE NG VGWGE V P T E + + + + L
Sbjct: 74 RSVLVRIETENGAVGWGETYGLVAPRATMEIIDDLLADFTIGRDPFDAAAIHDDLYDLMR 133
Query: 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT-IPIVS 186
V G G + AA+++AL D K +P+ +L GG + I I+ +P +
Sbjct: 134 VRGYTGGF-----YVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLPEDT 188
Query: 187 PAEAAELASKYRKQGFTTLKLK---VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243
A+ AELA+ ++ +GF++ K + +++E+LR + P D + +
Sbjct: 189 RAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILR--ERLGPAVRIACDMHWAHTAS 246
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-VK 302
EAV +++ + G+ E PV +D +GL V+ ++A E R++ D V
Sbjct: 247 EAVALIKAMEPHGLW--FAEAPVRTEDIDGLARVA----ASVSTAIAVGEEWRTVHDMVP 300
Query: 303 KIVKGNLADVINIKLAKVGVLGALEI 328
++ + LA ++ ++ G+ + I
Sbjct: 301 RVARRALA-IVQPEMGHKGITQFMRI 325
>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 436
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIA--WIEEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 311 DVINIKLAKVG 321
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Liganded With Mg++ And
D-Erythronohydroxamate
Length = 441
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIA--WIEEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 311 DVINIKLAKVG 321
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase
pdb|2QVH|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
With O- Succinyl Benzoate (Osb)
pdb|2QVH|B Chain B, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
With O- Succinyl Benzoate (Osb)
Length = 327
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 172 VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIR-AVH 227
V +T+ + T+P V P EAA + + G TT K+KV G++ D+ + A+R A+
Sbjct: 66 VRDTVPVNATVPAVGPEEAARIVAS---SGCTTAKVKVAERGQSEANDVARVEAVRDALG 122
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
P +D N + AV + L + EQP D L V + + V
Sbjct: 123 PRGRVRIDVNGAWDVDTAVRXIRLLDRFELE--YVEQPCATVD--ELAEV----RRRVSV 174
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVE 346
+AADES R +D ++ ADV+ +K+ + GV AL + E GL +++ VE
Sbjct: 175 PIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLAE---ECGLPVVVSSAVE 231
Query: 347 T 347
T
Sbjct: 232 T 232
>pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|B Chain B, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|C Chain C, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|D Chain D, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
Length = 399
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 25/250 (10%)
Query: 75 ENVAIRIELSNGCVGWGEAP--VLPHVTAEDQQTAMVKASEACEVLKESPA----MALGS 128
+V +RIE NG VGWGE V P T E + + + + L
Sbjct: 53 RSVLVRIETENGAVGWGETYGLVAPRATXEIIDDLLADFTIGRDPFDAAAIHDDLYDLXR 112
Query: 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT-IPIVS 186
V G G + AA+++AL D K +P+ +L GG + I I+ +P +
Sbjct: 113 VRGYTGGF-----YVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLPEDT 167
Query: 187 PAEAAELASKYRKQGFTTLKLK---VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243
A+ AELA+ ++ +GF++ K + ++ E+LR + P D + +
Sbjct: 168 RAKRAELAAAWQAKGFSSFKFASPVADDGVAKEXEILR--ERLGPAVRIACDXHWAHTAS 225
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-VK 302
EAV +++ G+ E PV +D +GL V+ ++A E R++ D V
Sbjct: 226 EAVALIKAXEPHGLW--FAEAPVRTEDIDGLARVA----ASVSTAIAVGEEWRTVHDXVP 279
Query: 303 KIVKGNLADV 312
++ + LA V
Sbjct: 280 RVARRALAIV 289
>pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
pdb|2OZ8|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
Length = 389
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 25/271 (9%)
Query: 70 RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129
R D V A+ + +G VG G L + + Q+ V E LK + A+AL
Sbjct: 27 RADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFEHEVWPSLKGNRAIALVHR 86
Query: 130 FGVVAGLLPGHQFA---SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI---TTDITIP 183
G G+Q A AV++AL D AK +PL L G N + + +
Sbjct: 87 VNRPRG---GNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRNRVKAYASGLDFH 143
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYK 241
+ A + L S G++ K+KVG ++ D+ L ++ P S ++D NE +
Sbjct: 144 LDDDAFVS-LFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWT 202
Query: 242 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301
+EA+ L + E G + E P+ R D +GL + H V+ S LD
Sbjct: 203 SKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTLRH------AVTWTQINSGEYLDLQ 256
Query: 302 KK--IVKGNLADVINIK-----LAKVGVLGA 325
K +++ + AD++N+ + ++G L A
Sbjct: 257 GKRLLLEAHAADILNVHGQVTDVMRIGWLAA 287
>pdb|2PS2|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
Length = 371
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 25/254 (9%)
Query: 79 IRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGL 136
+RI G GWGE+ ++ + + A+ A ++ P + + +
Sbjct: 39 VRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAPSLIGLDPRR-VDRINDAMDDA 97
Query: 137 LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS------PAEA 190
L GH+ A + A+++A D KSV +P+ L GG +NT +P++S P +
Sbjct: 98 LLGHEDA--KTAIDVACWDIFGKSVGLPVCELLGGRTNT-----RLPLISSIYVGEPEDM 150
Query: 191 AELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVL 249
+KYR +G+ +K+ G+ + + + A+ PD FI+DAN + A+ +L
Sbjct: 151 RARVAKYRAKGYKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLL 210
Query: 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309
+L G+ L E P W + + K + + DE + + KI+ +
Sbjct: 211 -RLLPHGLDFAL-EAPCA--TWRECISL----RRKTDIPIIYDELATNEMSIVKILADDA 262
Query: 310 ADVINIKLAKVGVL 323
A+ I++K++K G L
Sbjct: 263 AEGIDLKISKAGGL 276
>pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|B Chain B, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|C Chain C, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|D Chain D, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 444
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++
Sbjct: 207 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAXAVDANQRWDVGPAIDWXR 266
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 267 QLAEFDIA--WIEEPTSPDDV--LGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 321
Query: 311 DVINIKLAKVG 321
D+I I A+VG
Sbjct: 322 DLIQIDAARVG 332
>pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate
Dehydratase From Xanthomonas Campestris Liganded With
Mg++ And L-Fuconate
Length = 441
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
LA + GF T+KL VG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLAVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIA--WIEEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 311 DVINIKLAKVG 321
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
Length = 392
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 120/300 (40%), Gaps = 32/300 (10%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
P+ P + + V + +E S+G VGWGE + + +V+ A
Sbjct: 20 FRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRARLVETVLAP 79
Query: 116 EVLKES---PAMALGSVFGVVAGLL-----PGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + PA A + A L PG A A +++AL D A+ PLW
Sbjct: 80 LLTARAFADPAQAFAHLEARTAVLAIQTGEPG-PLAQAIAGLDIALCDLAARRAGQPLWA 138
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----KNLKEDIEVLRAI 223
GG + I + ++P ++ ++ +G+ KLKVG ++++ + V +
Sbjct: 139 WLGGSGDRI--GVYASGINPENPEDVVARKAAEGYRAFKLKVGFDDARDVRNALHVRELL 196
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD----DWEGLGHVSH 279
A P + DAN+G+ A ++ ++L + E+P+ D +W L +
Sbjct: 197 GAATP---LMADANQGWDLPRARQMAQRLGPAQLD--WLEEPLRADRPAAEWAELAQAAP 251
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLN 338
+ +A E+ + + + V+ LAK G G L + V A+GL
Sbjct: 252 M-------PLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLR 304
>pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With
(S)-Atrolactate
Length = 359
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 31/319 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
AM+ V E+ L F +AG + A+ A ++MA DA+ K PL
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAGYTGLIRMAA--AGIDMAAWDALGKVHETPL 123
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K K+G L +D+ V+R+IR
Sbjct: 124 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIR 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + GVT E+P + D+EG + +
Sbjct: 184 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI----QS 237
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASGLNLM 340
K V V E+ +++ K ++I ++ + A++I V +RAS L
Sbjct: 238 KLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPNAMKIGGVTGWIRASALAQQ 289
Query: 341 IGGMVETRLAMGFAGHLSA 359
G + + L + HL A
Sbjct: 290 FGIPMSSHLFQEISAHLLA 308
>pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase,
Target Efi- 502095) From Streptomyces Coelicolor, No Mg,
Ordered Loop
Length = 398
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 140/339 (41%), Gaps = 43/339 (12%)
Query: 37 FKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL 96
F+++ + VDV +N+PL+ PFT + +R+ +G GWGE
Sbjct: 20 FQSMMKITDVDVWV-----VNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGE---- 70
Query: 97 PHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLP---GHQFASVRAAVEMAL 153
T A + A +++ SP AL F ++P G+ + AAV++A
Sbjct: 71 ---TMWGAPVAAIVRRMAPDLIGTSP-FAL-EAFHRKQHMVPFFYGYLGYAAIAAVDVAC 125
Query: 154 IDAVAKSVSMPLWRLFGGVSNT---ITTDIT---IPIVSPAEAAELASKY-----RKQGF 202
DA+ K+ + L GG IT IT P +PA+ + +++ + GF
Sbjct: 126 WDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGF 185
Query: 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262
+KLK + D+ +LRA+R P + +D N + ++V G+
Sbjct: 186 DAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRA-------GIALEEL 238
Query: 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV 322
+ D G+ ++ + K K + + + +D ++ N DVI+ + K G
Sbjct: 239 DLEYLEDPCVGIEGMAQV-KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGG 297
Query: 323 LGALEIIEV---VRASGLNLMIGGMVETRLAMGFAGHLS 358
+ A + + G+NL GG L + A HL+
Sbjct: 298 IAATKALAAHCETFGLGMNLHSGG----ELGIATAAHLA 332
>pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With
(s)-atrolactate
Length = 359
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 31/319 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
AM+ V E+ L F +AG + A+ A ++MA DA+ K PL
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAGYTGLIRMAA--AGIDMAAWDALGKVHETPL 123
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K K+G L +D+ V+R+IR
Sbjct: 124 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIR 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + GVT E+P + D+EG + +
Sbjct: 184 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI----QS 237
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASGLNLM 340
K V V E+ +++ K ++I ++ + A++I V +RAS L
Sbjct: 238 KLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASALAQQ 289
Query: 341 IGGMVETRLAMGFAGHLSA 359
G + + L + HL A
Sbjct: 290 FGIPMSSHLFQEISAHLLA 308
>pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXL|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
Length = 383
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 31/319 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 34 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 93
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
AM+ V E+ L F +AG + A+ A ++MA DA+ K PL
Sbjct: 94 AAMIVNEPLAPVSLEA---MLAKRF-CLAGYTGLIRMAA--AGIDMAAWDALGKVHETPL 147
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K K+G L +D+ V+R+IR
Sbjct: 148 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIR 207
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + GVT E+P + D+EG + +
Sbjct: 208 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI----QS 261
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASGLNLM 340
K V V E+ +++ K ++I ++ + A++I V +RAS L
Sbjct: 262 KLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASALAQQ 313
Query: 341 IGGMVETRLAMGFAGHLSA 359
G + + L + HL A
Sbjct: 314 FGIPMSSHLFQEISAHLLA 332
>pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (R)-Alpha-Phenylglycidate
pdb|2MNR|A Chain A, Mechanism Of The Reaction Catalyzed By Mandelate Racemase.
2. Crystal Structure Of Mandelate Racemase At 2.5
Angstroms Resolution: Identification Of The Active Site
And Possible Catalytic Residues
Length = 357
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 31/319 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 8 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 67
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
AM+ V E+ L F +AG + A+ A ++MA DA+ K PL
Sbjct: 68 AAMIVNEPLAPVSLEA---MLAKRF-CLAGYTGLIRMAA--AGIDMAAWDALGKVHETPL 121
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K K+G L +D+ V+R+IR
Sbjct: 122 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIR 181
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + GVT E+P + D+EG + +
Sbjct: 182 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI----QS 235
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASGLNLM 340
K V V E+ +++ K ++I ++ + A++I V +RAS L
Sbjct: 236 KLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASALAQQ 287
Query: 341 IGGMVETRLAMGFAGHLSA 359
G + + L + HL A
Sbjct: 288 FGIPMSSHLFQEISAHLLA 306
>pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (r)-alpha-phenylglycidate
Length = 359
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 31/319 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
AM+ V E+ L F +AG + A+ A ++MA DA+ K PL
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAGYTGLIRMAA--AGIDMAAWDALGKVHETPL 123
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K K+G L +D+ V+R+IR
Sbjct: 124 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIR 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + GVT E+P + D+EG + +
Sbjct: 184 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI----QS 237
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASGLNLM 340
K V V E+ +++ K ++I ++ + A++I V +RAS L
Sbjct: 238 KLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASALAQQ 289
Query: 341 IGGMVETRLAMGFAGHLSA 359
G + + L + HL A
Sbjct: 290 FGIPMSSHLFQEISAHLLA 308
>pdb|3N4E|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING From Paracoccus Denitrificans Pd1222
pdb|3N4E|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING From Paracoccus Denitrificans Pd1222
pdb|4DWD|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Paracoccus Denitrificans Pd1222
Complexed With Magnesium
pdb|4DWD|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Paracoccus Denitrificans Pd1222
Complexed With Magnesium
Length = 393
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 116/284 (40%), Gaps = 37/284 (13%)
Query: 79 IRIELSNGCVGWGEA-PVLPH-----VTAEDQQTAMVKASEACEVLKESPAMALGSVFGV 132
+RI +G VGWGEA P L V A D + E EVL A+ L
Sbjct: 28 VRITAEDGTVGWGEASPXLGGIASLGVVARD----IAPFLEGQEVLDH--AVLLDRXXHR 81
Query: 133 VAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT--------------ITT 178
+ L P + AA ++AL D K + P+++L GG T
Sbjct: 82 LVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARSVD 141
Query: 179 DITIPIVSPAEAAELAS-KYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFILDA 236
++ + EA + A+ K R G T + ++ DI RA+R + PD+ DA
Sbjct: 142 EVVREVARRVEAEQPAAVKIRWDGDRT---RCDVDIPGDIAKARAVRELLGPDAVIGFDA 198
Query: 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR 296
N GY A+ V L ++G + FE+PV G V+ + ++V+A E
Sbjct: 199 NNGYSVGGAIRVGRALEDLGYS--WFEEPVQHYHVGAXGEVAQ----RLDITVSAGEQTY 252
Query: 297 SLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340
+L +K ++ + V + G+ G + + A G+ +
Sbjct: 253 TLQALKDLILSGVRXVQPDIVKXGGITGXXQCAALAHAHGVEFV 296
>pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)-
Mandelate
Length = 359
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 134/319 (42%), Gaps = 31/319 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
AM+ V E+ L F +AG + A+ A ++MA DA+ K PL
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAGYTGLIRMAA--AGIDMAAWDALGKVHETPL 123
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K ++G L +D+ V+R+IR
Sbjct: 124 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIR 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + GVT E+P + D+EG + +
Sbjct: 184 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI----QS 237
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASGLNLM 340
K V V E+ +++ K ++I ++ + A++I V +RAS L
Sbjct: 238 KLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASALAQQ 289
Query: 341 IGGMVETRLAMGFAGHLSA 359
G + + L + HL A
Sbjct: 290 FGIPMSSHLFQEISAHLLA 308
>pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|B Chain B, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|C Chain C, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|D Chain D, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
Length = 385
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 23/206 (11%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+N+PL+ PFT + +R+ +G GWGE T A + A
Sbjct: 13 VNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGE-------TXWGAPVAAIVRRXAP 65
Query: 116 EVLKESPAMALGSVFGVVAGLLP---GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
+++ SP AL F +P G+ + AAV++A DA K+ + L GG
Sbjct: 66 DLIGTSP-FAL-EAFHRKQHXVPFFYGYLGYAAIAAVDVACWDAXGKATGQSVTDLLGGA 123
Query: 173 SNT---ITTDIT---IPIVSPAEAAELASKY-----RKQGFTTLKLKVGKNLKEDIEVLR 221
IT IT P +PA+ + +++ + GF +KLK + D+ +LR
Sbjct: 124 VRDEVPITALITRADAPGATPADLPKAXAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILR 183
Query: 222 AIRAVHPDSSFILDANEGYKPQEAVE 247
A+R P + +D N + ++V
Sbjct: 184 AVREALPGVNLRVDPNAAWSVPDSVR 209
>pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|E Chain E, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|F Chain F, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|G Chain G, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|H Chain H, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|3FV9|G Chain G, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|A Chain A, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|D Chain D, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|E Chain E, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|F Chain F, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|B Chain B, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|H Chain H, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|C Chain C, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
Length = 386
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 21/290 (7%)
Query: 79 IRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGL 136
+ IE G GWGE+ ++ A T A +L P ++ +
Sbjct: 38 VSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAILGMDPRQH-DRIWDRMRDT 96
Query: 137 LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELAS 195
L GH+ A RAA+++A D A++ +PL + GG V+ + +I +P +
Sbjct: 97 LKGHRDA--RAALDIACWDIAAQAAGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVA 154
Query: 196 KYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV------HPDSSFILDANEGYKPQEAVEVL 249
++R QGF +K+G + E L A R P ++ DAN G + A+ +L
Sbjct: 155 RHRAQGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRML 214
Query: 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309
L G+ ++ E P W + + + + + DE ++ D+ ++ +L
Sbjct: 215 -SLLPPGLD-IVLEAPCA--SWA----ETKSLRARCALPLLLDELIQTETDLIAAIRDDL 266
Query: 310 ADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358
D + +K++K G+ L + A+G+ + + V ++++ HL+
Sbjct: 267 CDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISFAAILHLA 316
>pdb|2GDQ|A Chain A, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From Bacillus Subtilis At 1.8 A
Resolution
pdb|2GDQ|B Chain B, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From Bacillus Subtilis At 1.8 A
Resolution
pdb|2GGE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
Length = 382
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 43/311 (13%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA----PVLPHVTA 101
V + R E PL L P+ A IRI +G GWGE P L HV
Sbjct: 4 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPAL-HVGF 62
Query: 102 EDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
+ + +A GS +V + HQ A+ +AV MAL + AK+
Sbjct: 63 TKRIIPFLLGKQA------------GSRLSLVRTIQKWHQRAA--SAVSMALTEIAAKAA 108
Query: 162 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKY-----------RKQGFTTLKLKV- 209
+ L+GG IP+ + ++ + ++ K+GF +K+K+
Sbjct: 109 DCSVCELWGGRYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIG 163
Query: 210 GKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268
G + KED+ + A++ S + ILDAN+ Y A + E+ + E+P+
Sbjct: 164 GTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFK-WERYFSEWTNIGWLEEPLPF 222
Query: 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALE 327
D + + + + V VA E+ + ++ D+I + V G+ +
Sbjct: 223 DQPQDYA----MLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRD 278
Query: 328 IIEVVRASGLN 338
+++ R G+
Sbjct: 279 CLQLARYFGVR 289
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 33/277 (11%)
Query: 77 VAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGL 136
+ I+I +G GWGEA + ++ A++ E + P +++ S + ++ L
Sbjct: 37 IIIKITTEDGIEGWGEAF---SINFREKGIAII-IKELFREISNIPNLSIKSFYNKISLL 92
Query: 137 LPGHQ---FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP--AEAA 191
GH+ F+S +A+E+AL D K ++PL L T + +PI + ++
Sbjct: 93 SDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLL-----TKSPKPNVPIYATCWSDLK 147
Query: 192 ELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIRAVHPDS-SFILDANEGYKP 242
+ + Y +Q K G +L I+ + +R + D +LD P
Sbjct: 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDL---AVP 204
Query: 243 QEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301
++ + L E+ P E+PV D E + ++ I K+ F + V E L
Sbjct: 205 EDLDQTKSFLKEVSSFNPYWIEEPV---DGENISLLTEI-KNTFNMKVVTGEKQSGLVHF 260
Query: 302 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLN 338
++++ N AD+ N ++ +G G ++IIE+ + N
Sbjct: 261 RELISRNAADIFNPDISGMG--GLIDIIEISNEASNN 295
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 127/310 (40%), Gaps = 40/310 (12%)
Query: 75 ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVA 134
++V ++I G G GE H+ +K +L ++P L + +
Sbjct: 22 KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDLKQGLLSILLGQNP-FDLMKINKELT 80
Query: 135 GLLPGHQF-----ASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA 188
P + + +R ++ AL D AK + + + GG V I + PI
Sbjct: 81 DNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIK--VCYPIFRHR 138
Query: 189 EAAELASKYR------KQGFTTLKLKVGKNLKEDIEVL--------RAIRAVHPDSSFIL 234
+ E+ S +QGF +L VGKNL D E L +R D S +L
Sbjct: 139 FSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLL 198
Query: 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 294
+ + ++ A++ L K Y++G+ + E P R+D++GL + + E
Sbjct: 199 NWKDAHR---AIKRLTK-YDLGLE--MIESPAPRNDFDGLYQL------RLKTDYPISEH 246
Query: 295 CRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAMGF 353
S ++++K + D+ NI +G L A + + ++++G E L++G
Sbjct: 247 VWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQE--LSVGT 304
Query: 354 AGHLSAGLGC 363
A A LGC
Sbjct: 305 AA--MAHLGC 312
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 127/310 (40%), Gaps = 40/310 (12%)
Query: 75 ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVA 134
++V ++I G G GE H+ +K +L ++P L + +
Sbjct: 22 KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDLKQGLLSILLGQNP-FDLMKINKELT 80
Query: 135 GLLPGHQF-----ASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA 188
P + + +R ++ AL D AK + + + GG V I + PI
Sbjct: 81 DNFPETMYYFEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIK--VCYPIFRHR 138
Query: 189 EAAELASKYR------KQGFTTLKLKVGKNLKEDIEVL--------RAIRAVHPDSSFIL 234
+ E+ S +QGF +L VGKNL D E L +R D S +L
Sbjct: 139 FSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLL 198
Query: 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 294
+ + ++ A++ L K Y++G+ + E P R+D++GL + + E
Sbjct: 199 NWKDAHR---AIKRLTK-YDLGLE--MIESPAPRNDFDGLYQL------RLKTDYPISEH 246
Query: 295 CRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAMGF 353
S ++++K + D+ NI +G L A + + ++++G E L++G
Sbjct: 247 VWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQE--LSVGT 304
Query: 354 AGHLSAGLGC 363
A A LGC
Sbjct: 305 AA--MAHLGC 312
>pdb|2PGE|A Chain A, Crystal Structure Of Menc From Desulfotalea Psychrophila
Lsv54
Length = 377
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 46/250 (18%)
Query: 128 SVFGVVAGLLPGHQ------FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT 181
SV +AG+L Q F ++R A+EMAL+D ++ GG +D T
Sbjct: 98 SVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLS-----------GGRQEWFASDFT 146
Query: 182 -----IPI---VSPAEAAELASKYR---KQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHP 228
IP+ + EAA + + +G+ LKLK+G + ++ +L IR + P
Sbjct: 147 RGEKRIPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGAIDFDKECALLAGIRESFSP 206
Query: 229 DSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS-----HIAK 282
I +DAN + P A + L++L + + + EQP+ + W + + IA
Sbjct: 207 QQLEIRVDANGAFSPANAPQRLKRLSQFHLHSI--EQPIRQHQWSEMAALCANSPLAIAL 264
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 341
D+ + + A++ LD ++ I +K + +G A + IE+ R G+ I
Sbjct: 265 DEELIGLGAEQRSAMLDAIRP-------QYIILKPSLLGGFHYAGQWIELARERGIGFWI 317
Query: 342 GGMVETRLAM 351
+E+ L +
Sbjct: 318 TSALESNLGL 327
>pdb|3MWC|A Chain A, Crystal Structure Of Probable O-Succinylbenzoic Acid
Synthet Kosmotoga Olearia
Length = 400
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 47/333 (14%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMV--KASE 113
+P+ PF I++ ++ + I + G+GE+ P E +T V K
Sbjct: 19 IPMKIPFQISSGTCYTRRSLVVEIREGD-LFGYGESAPFEEPFYLGETLETTKVILKNHL 77
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL----- 168
+L + P +++ ++ + G+ FA R VE A D +AK + L +
Sbjct: 78 LPMILGKEP-LSIEEFNHLIKNGIRGNHFA--RCGVENAYWDLIAKKNKISLKAMIEKKM 134
Query: 169 --------FGGVSNTITTDITIPIVSPAEAAELASKYR---KQGFTTLKLKV--GKNLKE 215
+ +N I + + I L + ++G+ +K+K+ G +++
Sbjct: 135 KNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIKPGWDVEP 194
Query: 216 DIEVLRAIRAVHP-----DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
E RA+ P +SSF LD E +K +A + L EQP+H
Sbjct: 195 LQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCL-----------FHEQPLH--- 240
Query: 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEII 329
+E L + + ++ + DES S + + K ++++ NIK+ +V G+L A++I
Sbjct: 241 YEALLDLKELG-ERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIY 299
Query: 330 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362
++ +G+ L G M E+ L F L++ G
Sbjct: 300 KIATDNGIKLWGGTMPESGLGARFLISLASFRG 332
>pdb|3U4F|A Chain A, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|B Chain B, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|C Chain C, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|D Chain D, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
Length = 388
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 101/266 (37%), Gaps = 42/266 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MALGSVFGVVAGL- 136
+R+ +G GWG Q + + CEVL A LG + L
Sbjct: 39 VRVTSEDGARGWG-------------QVSTYHSDITCEVLHRQVAPWXLGQDCSDLDDLL 85
Query: 137 ---------LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V 185
PG A V+ A+ D K P+ L GG + TI + +
Sbjct: 86 DLVTEREHKFPGSYLRRAXAGVDTAIWDLRGKQAGKPVAELLGGSAGTIRAYASSXKRDI 145
Query: 186 SPAEAAELASKYRK-QGFTTLKLK----VGKNLKE----DIEVLRAIRAVHPDS-SFILD 235
+P + AE + R GF K++ VG+ E E++ R DS + ++D
Sbjct: 146 TPHDEAERXKRLRDAHGFDAFKVRAGAEVGRGRDEWPGRTEEIVPTXRREXGDSAALLID 205
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
AN Y P +A+E+ + L + G + FE+P + E VS + + V E
Sbjct: 206 ANSCYAPAQAIELGKLLQDHGFS--HFEEPCPYWELEQTKEVS----EALDIDVTGGEQD 259
Query: 296 RSLDDVKKIVKGNLADVINIKLAKVG 321
L ++ + DV+ + +G
Sbjct: 260 CDLTTWRRXIDXRAVDVVQPDILYLG 285
>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
Length = 426
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 49/226 (21%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAEAAELASKYRKQGF 202
S +AV+MAL D AK+ +MPL++L GG S T + S E + +K+R QGF
Sbjct: 106 SAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDEVLDDYAKHRDQGF 165
Query: 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262
++++ G E + + + + A +G P+E + EK + TP LF
Sbjct: 166 KAIRVQCGVPGMETTYGMAKGKGLAYEP-----ATKGSLPEEQLWSTEKY--LDFTPKLF 218
Query: 263 EQPVHRDDW---EGLGHVSH-----IAKDKFGVSV-------------AADESC------ 295
E RD + E L H H I +FG SV A +++C
Sbjct: 219 E--AVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMEDPTPAENQACFRLIRQ 276
Query: 296 ------------RSLDDVKKIVKGNLADVINIKLAKVGVLGALEII 329
S+ D K++++ L D I + G + + I
Sbjct: 277 HTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGITGMRRI 322
>pdb|3TOY|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|B Chain B, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|C Chain C, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|D Chain D, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TTE|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Complexed With Magnesium
And Mandelic Acid
pdb|3TTE|B Chain B, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Complexed With Magnesium
And Mandelic Acid
Length = 383
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAE-LASKYRKQGFTTL 205
+ ++MA DA+ + P+ L GG + I + ++ + L + + GF +
Sbjct: 128 SGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAI 187
Query: 206 KLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263
K K G +L D +++ +RA+ PD + +LD N+ P EA + +L + +T E
Sbjct: 188 KSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLT--WIE 245
Query: 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+PV +++ G V +++ + + A E+ + + +D I L KVG
Sbjct: 246 EPVPQENLSGHAAV----RERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVG 299
>pdb|2OZT|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From
Thermosynechococcus Elongatus Bp-1
Length = 332
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 99/276 (35%), Gaps = 33/276 (11%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R + R PL P T A + +R+E G VG+GE LP +E +
Sbjct: 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIA 63
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ LPGH + A + AL A + W+
Sbjct: 64 LCQQ-----------------------LPGHLTPEIXATIPEALPAAQFGFATA--WQSV 98
Query: 170 GGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH- 227
G + + ++ +AA E + ++G TT K KVG E+ + +
Sbjct: 99 GRLPYRVRPWPICALLGSGQAALEQWQQSWQRGQTTFKWKVGVXSPEEEQAILKALLAAL 158
Query: 228 -PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKF 285
P + LDAN + A L G + + EQP+ D W+ L ++
Sbjct: 159 PPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSLAQTVT--- 215
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
++A DES S +V++ V IK A G
Sbjct: 216 -TAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFG 250
>pdb|3H7V|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From
Thermosynechococcus Elongatus Bp-1 Complexed With Mg In
The Active Site
Length = 330
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 99/276 (35%), Gaps = 33/276 (11%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R + R PL P T A + +R+E G VG+GE LP +E +
Sbjct: 2 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIA 61
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ LPGH + A + AL A + W+
Sbjct: 62 LCQQ-----------------------LPGHLTPEIXATIPEALPAAQFGFATA--WQSV 96
Query: 170 GGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH- 227
G + + ++ +AA E + ++G TT K KVG E+ + +
Sbjct: 97 GRLPYRVRPWPICALLGSGQAALEQWQQSWQRGQTTFKWKVGVXSPEEEQAILKALLAAL 156
Query: 228 -PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKF 285
P + LDAN + A L G + + EQP+ D W+ L ++
Sbjct: 157 PPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSLAQTVT--- 213
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
++A DES S +V++ V IK A G
Sbjct: 214 -TAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFG 248
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 127/329 (38%), Gaps = 42/329 (12%)
Query: 75 ENVAIRIELSNGCVGWGE-----APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129
+V +R+ G VGWGE AP D V +A + P+ +
Sbjct: 51 RSVLVRMTTEAGTVGWGETYGIVAPGAVAALINDLLAGFVIGRDASD-----PSAVYDDL 105
Query: 130 FGV--VAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT-IPIVS 186
+ + V G G + AA+++AL D + + L GG ++ ++ +P +
Sbjct: 106 YDMMRVRGYTGGF-YVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPERT 164
Query: 187 PAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243
ELA ++ +GF K +I LR + + P + D + P+
Sbjct: 165 LKARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQV--LGPQAKIAADMHWNQTPE 222
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303
A+E++ ++ P E PV +D GL VS V +A E R+ D++
Sbjct: 223 RALELIAEMQPF--DPWFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMRA 276
Query: 304 IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363
++ ++ ++ G+ + I + G++++ H + G G
Sbjct: 277 RIERCRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIP--------------HATVGAGI 322
Query: 364 FKFIDLDTPLLLSEDPVLDGYEVSGAVYK 392
F L LS +L G+E ++++
Sbjct: 323 FLAASLQASSTLS---MLKGHEFQHSIFE 348
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 127/329 (38%), Gaps = 42/329 (12%)
Query: 75 ENVAIRIELSNGCVGWGE-----APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129
+V +R+ G VGWGE AP D V +A + P+ +
Sbjct: 71 RSVLVRMTTEAGTVGWGETYGIVAPGAVAALINDLLAGFVIGRDASD-----PSAVYDDL 125
Query: 130 FGV--VAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT-IPIVS 186
+ + V G G + AA+++AL D + + L GG ++ ++ +P +
Sbjct: 126 YDMMRVRGYTGGF-YVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPERT 184
Query: 187 PAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243
ELA ++ +GF K +I LR + + P + D + P+
Sbjct: 185 LKARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQV--LGPQAKIAADMHWNQTPE 242
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303
A+E++ ++ P E PV +D GL VS V +A E R+ D++
Sbjct: 243 RALELIAEMQPF--DPWFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMRA 296
Query: 304 IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363
++ ++ ++ G+ + I + G++++ H + G G
Sbjct: 297 RIERCRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIP--------------HATVGAGI 342
Query: 364 FKFIDLDTPLLLSEDPVLDGYEVSGAVYK 392
F L LS +L G+E ++++
Sbjct: 343 FLAASLQASSTLS---MLKGHEFQHSIFE 368
>pdb|4GIR|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|C Chain C, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|D Chain D, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIS|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Glycerol And Dicarboxylates Bound
(Mixed Loops, Space Group I4122)
pdb|4GIS|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Glycerol And Dicarboxylates Bound
(Mixed Loops, Space Group I4122)
pdb|4GGH|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|C Chain C, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|D Chain D, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
Length = 422
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 99/239 (41%), Gaps = 42/239 (17%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTL 205
+ V+MAL D AK +MPL +LFGG S T E E KY +QG+ +
Sbjct: 114 SGVDMALWDIKAKIANMPLHQLFGGKSRDAIQVYTHATSDTMEGLYEQVDKYLEQGYQHI 173
Query: 206 KLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-DANEGY 240
+ ++G + ++ +E+ + +R + IL D +E
Sbjct: 174 RCQLGFYGGVPENIQTAQNPTQGSYYDQDQYIENTVEMFKNLREKYGKQFHILHDVHERL 233
Query: 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300
P +A++ +++ + P E + E L ++ +++ VS+A E + ++
Sbjct: 234 FPNQAIQFAKQIEQ--YNPFFIEDILPPSQTEWLDNI----RNQSSVSLALGELFNNPEE 287
Query: 301 VKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMVETRL 349
K ++ D I ++++ G+ AL++ + G+ + IG V T L
Sbjct: 288 WKALIINRRVDFIRCHVSQIGGITPALKLGHFCESFGVRIAWHCPPDMTPIGAAVNTHL 346
>pdb|3P3B|A Chain A, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Tartrate
pdb|3P3B|B Chain B, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Tartrate
pdb|3QPE|A Chain A, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|B Chain B, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|C Chain C, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|D Chain D, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3VCC|A Chain A, Crystal Structure Of D-Galacturonate Dehydratase From
Geobacillus Sp. Complexed With Mg
pdb|3VCC|B Chain B, Crystal Structure Of D-Galacturonate Dehydratase From
Geobacillus Sp. Complexed With Mg
Length = 392
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 110/284 (38%), Gaps = 43/284 (15%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP------------IVSPAEAA 191
+ R +E ++D + + P++ L G + +P + A
Sbjct: 90 AYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAV 149
Query: 192 ELASKYRKQGFTT----LKLKVGKN---------LKEDIEVLRAIRAVH-PDSSFILDAN 237
L + QG+ K+KVG+ K DI ++R I V P ++DAN
Sbjct: 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDAN 209
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESC 295
Y EVL L + V E+ H D+ +E L + + V +A E
Sbjct: 210 NAYNLNLTKEVLAALSD--VNLYWLEEAFHEDEALYEDL--KEWLGQRGQNVLIADGEGL 265
Query: 296 RSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355
S ++ +G + DV+ + G +E+ E + A GL + +G
Sbjct: 266 ASPHLIEWATRGRV-DVLQYDIIWPGFTHWMELGEKLDAHGLR-SAPHCYGNAYGIYASG 323
Query: 356 HLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
HLSA + F+F++ D D ++G +VSG Y+ N H
Sbjct: 324 HLSAAVRNFEFVEYD-------DITIEGMDVSG--YRIENGEIH 358
>pdb|3MZN|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043
pdb|3MZN|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043
pdb|3NFU|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043 Complexed With
Magnesium
pdb|3NFU|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043 Complexed With
Magnesium
Length = 450
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 34/145 (23%)
Query: 145 VRAAVEMALIDAVAKSVSMPLWRLFGG----------------VSNTITTDITIPIV--- 185
V A+E AL D +++ MP+ L G + + TD+ P V
Sbjct: 109 VITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLFLLGDPDKTDLPYPRVADP 168
Query: 186 -------------SPAEAAELA-SKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS 230
+P A LA + Y + GF KLK G +E+ + +RA+ P++
Sbjct: 169 VDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEA 228
Query: 231 SFILDANEGYKPQEAVEVLEKLYEM 255
LD N +K EAV VLE + +
Sbjct: 229 RLALDPNGAWKLDEAVRVLEPIKHL 253
>pdb|3V5C|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|B Chain B, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|C Chain C, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|D Chain D, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5F|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
Length = 392
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 109/284 (38%), Gaps = 43/284 (15%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP------------IVSPAEAA 191
+ R +E ++D + + P++ L G + +P + A
Sbjct: 90 AYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAV 149
Query: 192 ELASKYRKQGFTT----LKLKVGKN---------LKEDIEVLRAIRAVH-PDSSFILDAN 237
L + QG+ K+KVG+ K DI ++R I V P ++DAN
Sbjct: 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDAN 209
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESC 295
Y EVL L + V E H D+ +E L + + V +A E
Sbjct: 210 NAYNLNLTKEVLAALSD--VNLYWLEAAFHEDEALYEDL--KEWLGQRGQNVLIADGEGL 265
Query: 296 RSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355
S ++ +G + DV+ + G +E+ E + A GL + +G
Sbjct: 266 ASPHLIEWATRGRV-DVLQYDIIWPGFTHWMELGEKLDAHGLR-SAPHCYGNAYGIYASG 323
Query: 356 HLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
HLSA + F+F++ D D ++G +VSG Y+ N H
Sbjct: 324 HLSAAVRNFEFVEYD-------DITIEGMDVSG--YRIENGEIH 358
>pdb|3N4F|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3OPS|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
Length = 392
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 43/284 (15%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP------------IVSPAEAA 191
+ R +E ++D + + P++ L G + +P + A
Sbjct: 90 AYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAV 149
Query: 192 ELASKYRKQGFTT----LKLKVGKN---------LKEDIEVLRAIRAVH-PDSSFILDAN 237
L + QG+ K+KVG+ K DI ++R I V P +DAN
Sbjct: 150 ALXQEEAXQGYAKGQRHFKIKVGRGGRHXPLWEGTKRDIAIVRGISEVAGPAGKIXIDAN 209
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESC 295
Y EVL L + V E+ H D+ +E L + + V +A E
Sbjct: 210 NAYNLNLTKEVLAALSD--VNLYWLEEAFHEDEALYEDL--KEWLGQRGQNVLIADGEGL 265
Query: 296 RSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355
S ++ +G + DV+ + G E+ E + A GL + +G
Sbjct: 266 ASPHLIEWATRGRV-DVLQYDIIWPGFTHWXELGEKLDAHGLR-SAPHCYGNAYGIYASG 323
Query: 356 HLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
HLSA + F+F++ D D ++G +VSG Y+ N H
Sbjct: 324 HLSAAVRNFEFVEYD-------DITIEGXDVSG--YRIENGEIH 358
>pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
Length = 372
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 19/142 (13%)
Query: 201 GFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL-YEMGVT 258
G +K+KVG+ ++D E +RA R A+ ++DAN Y ++A+ E G++
Sbjct: 159 GIPRVKMKVGREPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGIS 218
Query: 259 PVLFEQPVHRDDWEGLGHVSHIAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIK 316
E+PV +D EGL + +D+ GV++AA E +L + +LA ++I
Sbjct: 219 --YLEEPVSSEDREGL----RLLRDRGPGGVAIAAGEYEWTLPQLH-----DLAGCVDIL 267
Query: 317 LAKV----GVLGALEIIEVVRA 334
A V G+ G L + + R
Sbjct: 268 QADVTRCGGITGLLRVDGICRG 289
>pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|3TJ4|B Chain B, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|4H19|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|C Chain C, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|D Chain D, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|E Chain E, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|F Chain F, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|G Chain G, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|H Chain H, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|I Chain I, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|K Chain K, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|L Chain L, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|M Chain M, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|N Chain N, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|P Chain P, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|J Chain J, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|O Chain O, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
Length = 372
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 25/291 (8%)
Query: 56 LNVPLIA-PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
L++PL + + +T + V +I S+G G+G H+ ++ T+ + A
Sbjct: 11 LHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCISDCYA 70
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFAS-------VRAAVEMALIDAVAKSVSMPLWR 167
+L E + S P Q+ AAV++AL D AK +PLW
Sbjct: 71 PLLLGEDASDH--SRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWH 128
Query: 168 LFGGVSN----TITTDI-TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKE-DIEVLR 221
GG TDI + A A + GFT LK+KVG + DI L
Sbjct: 129 YLGGARTAGVEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLT 188
Query: 222 AIRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
A+R V +D N + ++ + FE+P+ DD + + +
Sbjct: 189 AVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDI--YWFEEPLWYDD---VTSHARL 243
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV 331
A++ + +A E ++D + + + + ++G G E I+V
Sbjct: 244 ARNT-SIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLG--GITEYIQV 291
>pdb|2OO6|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
pdb|3GO2|A Chain A, Crystal Structure Of Putative L-alanine-dl-glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium
Length = 409
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 135/354 (38%), Gaps = 77/354 (21%)
Query: 79 IRIELSNGCVGWGEAPV---LPHVTAEDQQTA--MVKAS--EACEVLKESPAMALGSVFG 131
+++ G VGW E P VTA +Q +V AS E E+ + + G
Sbjct: 23 VKLTTDEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVMEHERFFAEAYCLTRPATGG 82
Query: 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITI 182
VV+ + A+E AL+DA AK++++P + L GG S+ T I
Sbjct: 83 VVSEGI---------GAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRINH 133
Query: 183 PIVSPAEAAEL------ASKYRKQGFTTLKL----------------------------- 207
P +L A + R++ F +K
Sbjct: 134 PKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDR 193
Query: 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
KV +NL+ +E LR PD +LD N KP+ +++L +L + LF +
Sbjct: 194 KVLRNLRAHLEALR--DGAGPDVEILLDLNFNAKPEGYLKILRELADFD----LFWVEID 247
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE 327
+GL +V + + +++ E+ + + K N DV + GV +++
Sbjct: 248 SYSPQGLAYVRNHSPH----PISSCETLFGIREFKPFFDANAVDVAIVDTIWNGVWQSMK 303
Query: 328 IIEVVRASGLNLM---IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 378
I A +N+ G + T + FA A + + ++ D L ED
Sbjct: 304 IAAFADAHDINVAPHNFYGHLCTMINANFA----AAVPNLRIMETDIDRLAWED 353
>pdb|3T9P|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
pdb|3T9P|B Chain B, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
Length = 388
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 79/216 (36%), Gaps = 48/216 (22%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MALGSVFGVVAGLL 137
+R+ +G GWG Q + A C + A ALG+ A L
Sbjct: 39 VRVTTDSGAQGWG-------------QVSTYNADITCTIFHRQIAPHALGTDALDFADTL 85
Query: 138 ----------PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDI 180
PG ++ AL D K P+ L GG ++++ DI
Sbjct: 86 DLIYERELKYPGSYLRRAMTGLDTALWDMRGKLEGKPVATLLGGSPGPVRAYASSMRRDI 145
Query: 181 TIPIVSPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIE---------VLRAIRAVHPDS 230
T P + AE + R +GFT K +VG D + V RA+
Sbjct: 146 T-----PEDEAERFCRLRDDKGFTAFKWRVGAEAGRDHDEWPGRTEAVVPTVSRALGDGI 200
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 266
++D N Y P A+EV + L + G+ FE+P
Sbjct: 201 EKLVDGNSCYSPARAIEVGKLLQDNGIG--HFEEPC 234
>pdb|3RCY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
Length = 433
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 33/245 (13%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT----------IPIVSPAE-AAELAS 195
+ +E+A D + K+ P+W L GG N T P + A+ AAE A+
Sbjct: 96 SGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPITPFWTSADMAAESAA 155
Query: 196 KYRKQGFTTLK--------LKVGK-----NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+G+T +K L+ G ++ +E R IRA D + +L G
Sbjct: 156 DCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFT 215
Query: 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302
L + E +P+ +E+PV D+ + V+ + + VA E + +
Sbjct: 216 TAGAIRLGQAIEP-YSPLWYEEPVPPDNVGAMAQVARAVR----IPVATGERLTTKAEFA 270
Query: 303 KIVKGNLADVINIKLAKVGVLGALE----IIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358
+++ A ++ L + G + ++ + EV A + G VE + FA +
Sbjct: 271 PVLREGAAAILQPALGRAGGIWEMKKVAAMAEVYNAQMAPHLYAGPVEWAANVHFAASIP 330
Query: 359 AGLGC 363
L C
Sbjct: 331 NILMC 335
>pdb|4E4U|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme (Target Psi-200780) From Burkholderia
Sar-1
Length = 412
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 47/222 (21%)
Query: 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT------ 181
++ GVV+GL EMA D + K+ + P++ L GG + T
Sbjct: 89 TMMGVVSGL-------------EMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKN 135
Query: 182 ----IPIVSPAEAAELASKYRKQGFTTLKLK--------VGKNLKEDIEVL--------R 221
P AAE A++ K GFT +K G L +EVL R
Sbjct: 136 AKGEYDYDDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQL--SLEVLDRCELFCRR 193
Query: 222 AIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
AV + + + P A+ + ++L + P+ FE+PV E + V+
Sbjct: 194 VREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKY--DPLWFEEPVPPGQEEAIAQVA--- 248
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323
+ +A E + + K+++ A ++ + +A+VG L
Sbjct: 249 -KHTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGL 289
>pdb|3SN0|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Fumarate
pdb|3SN1|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Tartrate
pdb|3SN4|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Alpha- Ketoglutarate
Length = 409
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 123/330 (37%), Gaps = 79/330 (23%)
Query: 79 IRIELSNGCVGWGEAPV---LPHVTAEDQQTA--MVKAS--EACEVLKESPAMALGSVFG 131
+++ G VGW E P VTA +Q +V AS E E+ + + G
Sbjct: 23 VKLTTDEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVXEHERFFAEAYCLTRPATGG 82
Query: 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITI 182
VV+ + A+E AL+DA AK++++P + L GG S+ T I
Sbjct: 83 VVSEGI---------GAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRINH 133
Query: 183 PIVSPAEAAEL------ASKYRKQGFTTLKL----------------------------- 207
P +L A + R++ F +K
Sbjct: 134 PKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDR 193
Query: 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
KV +NL+ +E LR PD +LD N KP+ +++L +L + LF +
Sbjct: 194 KVLRNLRAHLEALR--DGAGPDVEILLDLNFNAKPEGYLKILRELADFD----LFWVEID 247
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE 327
+GL +V + + +++ E+ + + K N DV + GV + +
Sbjct: 248 SYSPQGLAYVRNHSPH----PISSCETLFGIREFKPFFDANAVDVAIVDTIWNGVWQSXK 303
Query: 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHL 357
I A +N+ F GHL
Sbjct: 304 IAAFADAHDINVA---------PHNFYGHL 324
>pdb|3TJI|A Chain A, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|B Chain B, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|C Chain C, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|D Chain D, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
Length = 422
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 120/318 (37%), Gaps = 66/318 (20%)
Query: 69 SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA--- 125
+R D+ V +R+ G G H A QQ + + E L+ P M
Sbjct: 37 TRPDRHNLVTVRVTTEQGITG--------HGCATFQQRPLAVKTLVDEYLQ--PLMIGRD 86
Query: 126 ------LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD 179
L + V A G + + V+MAL D + MPL++LFGG S
Sbjct: 87 ANNIEDLWQMMNVNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRD---- 142
Query: 180 ITIPIVSPAEAAELASKYRK------QGFTTLKLKVG----------------------- 210
IP S A L + + QG+ ++ ++G
Sbjct: 143 -AIPAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQ 201
Query: 211 -KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV 266
+ + +E+ A+R + IL D +E PQ+AV++ ++L P E P
Sbjct: 202 QEYMSNTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPF--QPYFIEDILPP 259
Query: 267 HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGA 325
+ W L V + + V +A E + + ++ D I ++++ G+ A
Sbjct: 260 QQSAW--LEQV----RQQSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPA 313
Query: 326 LEIIEVVRASGLNLMIGG 343
L++ + +A G+ L G
Sbjct: 314 LKLAHLCQAFGVRLAWHG 331
>pdb|3VDG|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Formate And Acetate
pdb|3VFC|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Tartrate
Length = 445
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 188 AEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAV 246
A+A + +Y GF+ +KLK G +E++ + A+RA PD LD N + PQ +V
Sbjct: 199 AQARRMIDEY---GFSAIKLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSV 255
Query: 247 EVLEKL 252
+V L
Sbjct: 256 KVAAGL 261
>pdb|3R4E|A Chain A, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|B Chain B, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|C Chain C, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|D Chain D, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
Length = 418
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVS--------NTITTDITIPIVSPAEAAELASKYR 198
AAV+MAL D AK MPL++L GG S + +DI AE E Y
Sbjct: 103 AAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDI-------AETVEAVGHYI 155
Query: 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYE 254
G+ ++ + G +K+ V R P D+S L + G+ ++A+ + KL+E
Sbjct: 156 DMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADAS--LPSVTGWDTRKALNYVPKLFE 211
>pdb|2QJJ|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJN|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
Length = 402
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVS--------NTITTDITIPIVSPAEAAELASKYR 198
AAV+MAL D AK MPL++L GG S + +DI AE E Y
Sbjct: 87 AAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDI-------AETVEAVGHYI 139
Query: 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYE 254
G+ ++ + G +K+ V R P D+S L + G+ ++A+ + KL+E
Sbjct: 140 DMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADAS--LPSVTGWDTRKALNYVPKLFE 195
>pdb|2QJM|A Chain A, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|B Chain B, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|C Chain C, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|D Chain D, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
Length = 402
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVS--------NTITTDITIPIVSPAEAAELASKYR 198
AAV+MAL D AK MPL++L GG S + +DI AE E Y
Sbjct: 87 AAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDI-------AETVEAVGHYI 139
Query: 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYE 254
G+ ++ + G +K+ V R P D+S L + G+ ++A+ + KL+E
Sbjct: 140 DMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADAS--LPSVTGWDTRKALNYVPKLFE 195
>pdb|4IL2|A Chain A, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|B Chain B, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|C Chain C, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|D Chain D, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
Length = 426
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 47/225 (20%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAEAAELASKYRKQGF 202
S +AV+MAL D AK+ +MPL++L GG S + S EA + +++++ GF
Sbjct: 106 SAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVYCHTTGHSIDEALDDYARHQELGF 165
Query: 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILD-ANEGYKPQEAVEVLEKLYEMGVTPVL 261
++++ G I ++ + + A +G P+E + EK + P L
Sbjct: 166 KAIRVQCG------IPGMKTTYGMSKGKGLAYEPATKGQWPEEQLWSTEKY--LDFMPKL 217
Query: 262 FEQPVHRDDW-EGLGHVSH-----IAKDKFGVSV-------------AADESC------- 295
F+ ++ + E L H H I +FG S+ A ++ C
Sbjct: 218 FDAVRNKFGFDEHLLHDMHHRLTPIEAARFGKSIEDYRMFWMEDPTPAENQECFRLIRQH 277
Query: 296 -----------RSLDDVKKIVKGNLADVINIKLAKVGVLGALEII 329
S+ D K++++ L D I L G + + I
Sbjct: 278 TVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRI 322
>pdb|2HZG|A Chain A, Crystal Stucture Of Predicted Mandelate Racemase From
Rhodobacter Sphaeroides
pdb|2HZG|B Chain B, Crystal Stucture Of Predicted Mandelate Racemase From
Rhodobacter Sphaeroides
Length = 401
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 15/202 (7%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKYRKQGFTT 204
+ +EMAL D + + +S P W L G ++ + +P E E A R+ GF
Sbjct: 104 SGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLERARAARRDGFAA 163
Query: 205 LKLKVGK----NLKEDIEVLRAIR-AVHPDSSFILDANE--GYKPQEAVEVLEKLYEMGV 257
+K G + D + + A R + PD ++D + G + A L L GV
Sbjct: 164 VKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGV 223
Query: 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317
+ E+P D L + +A V +A E+ + + ++ I I
Sbjct: 224 --LWLEEPF---DAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDC 278
Query: 318 AKVGVLG-ALEIIEVVRASGLN 338
++G LG A + + +A G+
Sbjct: 279 GRIGGLGPAKRVADAAQARGIT 300
>pdb|3GY1|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
pdb|3GY1|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
Length = 408
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA-SKYRKQGFTTL 205
+ V+MAL D K +MPL++LFGG S T + E + RK+G+ +
Sbjct: 93 SGVDMALWDIKGKLANMPLYQLFGGKSRDAIAAYTHAVADNLEDLYTEIDEIRKKGYQHI 152
Query: 206 KLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-DANEGY 240
+ ++G + ++ + + ++R + IL D +E
Sbjct: 153 RCQLGFYGGNSSEFHTTDNPTQGSYFDQDEYMRTTVSMFSSLREKYGYKFHILHDVHERL 212
Query: 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300
P +AV+ + + + P E + D E LG + + + +A E + +
Sbjct: 213 FPNQAVQFAKDVEKY--KPYFIEDILPPDQNEWLGQI----RSQTSTPLATGELFNNPME 266
Query: 301 VKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
K ++ D I ++++ G+ AL++ + A G+ +
Sbjct: 267 WKSLIANRQVDFIRCHVSQIGGITPALKLGSLCAAFGVRI 306
>pdb|3S47|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Clostridium Beijerincki Complexed With Mg
pdb|3S47|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Clostridium Beijerincki Complexed With Mg
Length = 401
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA-SKYRKQGFTTL 205
+ V+MAL D K +MPL++LFGG S T + E + RK+G+ +
Sbjct: 93 SGVDMALWDIKGKLANMPLYQLFGGKSRDAIAAYTHAVADNLEDLYTEIDEIRKKGYQHI 152
Query: 206 KLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-DANEGY 240
+ ++G + ++ + + ++R + IL D +E
Sbjct: 153 RCQLGFYGGNSSEFHTTDNPTQGSYFDQDEYMRTTVSMFSSLREKYGYKFHILHDVHERL 212
Query: 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300
P +AV+ + + + P E + D E LG + + + +A E + +
Sbjct: 213 FPNQAVQFAKDVEKY--KPYFIEDILPPDQNEWLGQI----RSQTSTPLATGELFNNPME 266
Query: 301 VKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
K ++ D I ++++ G+ AL++ + A G+ +
Sbjct: 267 WKSLIANRQVDFIRCHVSQIGGITPALKLGSLCAAFGVRI 306
>pdb|3R25|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
Length = 401
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 52/244 (21%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA------AELASKYRKQ 200
+ V+MAL D AK MPL +LFGG S IP+ + A + +L + ++
Sbjct: 93 SGVDMALWDIKAKLAGMPLHQLFGGKSRD-----AIPVYTHATSDTMEGIYDLVEGFLEK 147
Query: 201 GFTTLKLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-D 235
G+ ++ ++G + + + + +++R + + IL D
Sbjct: 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHD 207
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
+E P +A++ +++ + P E + + E L ++ + + VS+ E
Sbjct: 208 VHERLFPNQAIQFAKEVEQY--KPYFIEDILPPNQTEWLDNI----RSQSSVSLGLGELF 261
Query: 296 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMV 345
+ ++ K ++ D I ++++ G+ AL++ + + G+ + IG V
Sbjct: 262 NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAV 321
Query: 346 ETRL 349
T L
Sbjct: 322 NTHL 325
>pdb|3SBF|A Chain A, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|B Chain B, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|C Chain C, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|D Chain D, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
Length = 401
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 52/244 (21%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA------AELASKYRKQ 200
+ V+MAL D AK MPL +LFGG S IP+ + A + +L + ++
Sbjct: 93 SGVDMALWDIKAKLAGMPLHQLFGGKSRD-----AIPVYTHATSDTMEGIYDLVEGFLEK 147
Query: 201 GFTTLKLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-D 235
G+ ++ ++G + + + + +++R + + IL D
Sbjct: 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHD 207
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
+E P +A++ +++ + P E + + E L ++ + + VS+ E
Sbjct: 208 VHERLFPNQAIQFAKEVEQY--KPYFIEDILPPNQTEWLDNI----RSQSSVSLGLGELF 261
Query: 296 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMV 345
+ ++ K ++ D I ++++ G+ AL++ + + G+ + IG V
Sbjct: 262 NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCAPDMTPIGAAV 321
Query: 346 ETRL 349
T L
Sbjct: 322 NTHL 325
>pdb|3DFH|A Chain A, Crystal Structure Of Putative Mandelate Racemase MUCONATE
Lactonizing Enzyme From Vibrionales Bacterium Swat-3
pdb|3DFH|B Chain B, Crystal Structure Of Putative Mandelate Racemase MUCONATE
Lactonizing Enzyme From Vibrionales Bacterium Swat-3
pdb|3DFH|C Chain C, Crystal Structure Of Putative Mandelate Racemase MUCONATE
Lactonizing Enzyme From Vibrionales Bacterium Swat-3
Length = 394
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 52/244 (21%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA------AELASKYRKQ 200
+ V+MAL D AK MPL +LFGG S IP+ + A + +L + ++
Sbjct: 93 SGVDMALWDIKAKLAGMPLHQLFGGKSRD-----AIPVYTHATSDTMEGIYDLVEGFLEK 147
Query: 201 GFTTLKLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-D 235
G+ ++ ++G + + + + +++R + + IL D
Sbjct: 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHD 207
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
+E P +A++ +++ + P E + + E L ++ + + VS+ E
Sbjct: 208 VHERLFPNQAIQFAKEVEQY--KPYFIEDILPPNQTEWLDNI----RSQSSVSLGLGELF 261
Query: 296 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMV 345
+ ++ K ++ D I ++++ G+ AL++ + + G+ + IG V
Sbjct: 262 NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAV 321
Query: 346 ETRL 349
T L
Sbjct: 322 NTHL 325
>pdb|3T4W|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|C Chain C, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|D Chain D, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
Length = 432
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 106/287 (36%), Gaps = 64/287 (22%)
Query: 77 VAIRIELSNGCVGWGE---APVLP-------------HVTAEDQQTAMVKASEACEV-LK 119
+ +++ G VGWGE A V P H+ E+ + + A
Sbjct: 46 ILVKLTTDTGIVGWGECYAASVGPQAMRAVIEDVFARHMQGENPENIELMYRRAYSSGFT 105
Query: 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITT- 178
+ P + +V G +GL E+A D + K P++ L GG N
Sbjct: 106 QRPDL---TVMGAFSGL-------------EIACWDILGKDRDRPVYALIGGRMNERVRG 149
Query: 179 ----------DITIPIVSPAEAAELASKYRKQGFTTLK-------------LKVGKNLKE 215
D+T SP AAE A +G+T +K + ++ +
Sbjct: 150 YTYLYPLPHHDMTAFWTSPEMAAESALDCVARGYTAIKFDPAGPYTMRGGHMPAMTDISQ 209
Query: 216 DIEVLRAIRAVHPDSSFILDANEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274
+ +AIRA D + +L G + A+ + + +P+ +E+P+ D E +
Sbjct: 210 SVAFCKAIRAAVGDKADLLFGTHGQFTTAGAIRLGNAIAPY--SPLWYEEPIPPDAVEQM 267
Query: 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
V+ + VA E + + +++ A ++ L +VG
Sbjct: 268 AAVARAVP----IPVATGERLTTKAEFAPVLRSGAAAILQPALGRVG 310
>pdb|4FI4|A Chain A, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
pdb|4FI4|B Chain B, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
pdb|4FI4|C Chain C, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
Length = 425
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGV----------SNTITTDITIPIVSPAEAAELASK 196
AAV+MAL D AK MPL++L GG +N T + TI AE A K
Sbjct: 110 AAVDMALWDIKAKLAGMPLYQLLGGACREGVMVYGHANGETIEDTI-----AE----ARK 160
Query: 197 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 256
Y+ G+ ++L+ G + L + V D F A +G P E V K +
Sbjct: 161 YQALGYKAIRLQSG------VPGLPSTYGVSGDKMFYEPA-DGNLPTENVWSTSKYLKH- 212
Query: 257 VTPVLFEQPVHRDDWEGLGHVSHIAKD 283
P LFE E LG H+ D
Sbjct: 213 -APKLFEAAR-----EALGDDVHLLHD 233
>pdb|2P0I|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
Length = 456
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFT 203
+V + +++AL D + K + P++RL GG + D P A K
Sbjct: 131 AVISVIDLALWDLLGKVRNEPVYRLIGGATKE-RLDFYCTGPEPTAAKAXGFWGGKVPLP 189
Query: 204 TLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262
+ L++++E LR R AV PD +D +E+++ ++ + +
Sbjct: 190 FCPDDGHEGLRKNVEFLRKHREAVGPDFPIXVDCYXSLNVSYTIELVKACLDLNIN--WW 247
Query: 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV 322
E+ + DD +G + I + V E S +K+V+G D+I + +G
Sbjct: 248 EECLSPDDTDGF---ALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVXWLGG 304
Query: 323 L 323
L
Sbjct: 305 L 305
>pdb|3FXG|A Chain A, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|B Chain B, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|C Chain C, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|D Chain D, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|E Chain E, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|F Chain F, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|G Chain G, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|H Chain H, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
Length = 455
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 9/182 (4%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITTDITIPIVSPAEAAELASKYRKQGF 202
+V + +++AL D + K + P++RL GG + + T P + A+A F
Sbjct: 131 AVISVIDLALWDLLGKVRNEPVYRLIGGATKERLDFYCTGPEPTAAKAXGFWGGKVPLPF 190
Query: 203 TTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261
G L++++E LR R AV PD +D +E+++ ++ +
Sbjct: 191 CPDDGHEG--LRKNVEFLRKHREAVGPDFPIXVDCYXSLNVSYTIELVKACLDLNIN--W 246
Query: 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+E+ + DD +G + I + V E S +K+V+G D+I + +G
Sbjct: 247 WEECLSPDDTDGF---ALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVXWLG 303
Query: 322 VL 323
L
Sbjct: 304 GL 305
>pdb|4GME|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
pdb|4GME|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
Length = 426
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAE----LASKYRKQGF 202
AAV+MAL D K +P+++L GG T +T+ + E E A KY+ G+
Sbjct: 111 AAVDMALWDIKGKVAGLPVYQLLGGACR---TGVTVYGHANGETIEDTIAEAVKYKAMGY 167
Query: 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262
++L+ G + L + V D F A+ P E + K + P LF
Sbjct: 168 KAIRLQTG------VPGLASTYGVSKDKMFYEPADNDL-PTENIWSTAKY--LNSVPKLF 218
Query: 263 EQ 264
E+
Sbjct: 219 ER 220
>pdb|3VCN|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
pdb|3VCN|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
Length = 425
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAE----LASKYRKQGF 202
AAV+MAL D K +P+++L GG T +T+ + E E A KY+ G+
Sbjct: 110 AAVDMALWDIKGKVAGLPVYQLLGGACR---TGVTVYGHANGETIEDTIAEAVKYKAMGY 166
Query: 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262
++L+ G + L + V D F A+ P E + K + P LF
Sbjct: 167 KAIRLQTG------VPGLASTYGVSKDKMFYEPADNDL-PTENIWSTAKY--LNSVPKLF 217
Query: 263 EQ 264
E+
Sbjct: 218 ER 219
>pdb|4G8T|A Chain A, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|B Chain B, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|C Chain C, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|D Chain D, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
Length = 464
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEAA Y K GF KLK G + E+ E + A+ PD+ LD N +
Sbjct: 206 VVRLAEAA-----YEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAWSL 260
Query: 243 QEAVEVLEKL 252
EAV++ ++L
Sbjct: 261 DEAVKIGKQL 270
>pdb|4HN8|A Chain A, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|B Chain B, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|C Chain C, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|D Chain D, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|E Chain E, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|F Chain F, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|G Chain G, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|H Chain H, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
Length = 473
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 201 GFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAV 246
GF KLK G E+ E +RAI+A PD+ LD N + EA+
Sbjct: 219 GFADFKLKGGVXRGAEEXEAIRAIKARFPDARVTLDPNGAWSLDEAI 265
>pdb|4F4R|A Chain A, Crystal Structure Of D-Mannonate Dehydratase Homolog From
Chromohalobacter Salexigens (Target Efi-502114), With
Bound Na, Ordered Loop
Length = 426
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSN 174
AAV+MAL D AK+ MPL++L GG S
Sbjct: 110 AAVDMALWDIKAKAAGMPLYQLLGGKSR 137
>pdb|3BSM|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
Length = 413
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSN 174
AAV+MAL D AK+ MPL++L GG S
Sbjct: 89 AAVDMALWDIKAKAAGMPLYQLLGGKSR 116
>pdb|3QKF|A Chain A, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|B Chain B, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|C Chain C, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|D Chain D, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|E Chain E, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|F Chain F, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|G Chain G, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|H Chain H, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
Length = 405
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSN 174
AAV+MAL D AK+ MPL++L GG S
Sbjct: 89 AAVDMALWDIKAKAAGMPLYQLLGGKSR 116
>pdb|3OW1|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3P93|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3PK7|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3QKE|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3RGT|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
Length = 405
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSN 174
AAV+MAL D AK+ MPL++L GG S
Sbjct: 89 AAVDMALWDIKAKAAGMPLYQLLGGKSR 116
>pdb|3THU|A Chain A, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
pdb|3THU|B Chain B, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
pdb|3THU|C Chain C, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
Length = 426
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVS----------NTITTDITIPIVSPAEAAELASK 196
AAV+MAL D K +P+++L GG S N T + T+ ++A
Sbjct: 111 AAVDMALWDIKGKIAGLPVYQLLGGASREGVMVYGHANGTTIEDTV---------KVALD 161
Query: 197 YRKQGFTTLKLKVG 210
Y+ QG+ ++L+ G
Sbjct: 162 YQAQGYKAIRLQCG 175
>pdb|2POZ|A Chain A, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|B Chain B, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|C Chain C, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|D Chain D, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|E Chain E, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|F Chain F, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|G Chain G, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|H Chain H, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
Length = 392
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 30/205 (14%)
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGG----VSNTITTDITIPIVSPAEAAELASKY 197
FA + +A+E AL D K + +P++ LFGG +P E A +
Sbjct: 90 FAGI-SAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADTPDEFARAVERP 148
Query: 198 RKQGFTTLKL-----KVGKNLK---------EDIEV----LRAIR-AVHPDSSFILDANE 238
K+G+ LK +VG L+ E IE+ ++A+R A P+ +D +
Sbjct: 149 LKEGYGALKFYPLAQRVGSALQHVTRRSXSAEAIELAYRRVKAVRDAAGPEIELXVDLSG 208
Query: 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
G E + K+ E+ + E+P D L +S ++ + +A E +
Sbjct: 209 GLTTDETIRFCRKIGELDI--CFVEEPCDPFDNGALKVIS----EQIPLPIAVGERVYTR 262
Query: 299 DDVKKIVKGNLADVINIKLAKVGVL 323
+KI + +I + G L
Sbjct: 263 FGFRKIFELQACGIIQPDIGTAGGL 287
>pdb|1BQG|A Chain A, The Structure Of The D-Glucarate Dehydratase Protein From
Pseudomonas Putida
Length = 451
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKED-IEVLRAIRAVHPDSSFILDANEGYKP 242
+V+ AEAA Y + GF KLK G ED I + A+ PD+ LD N +
Sbjct: 194 VVALAEAA-----YDRYGFKDFKLKGGVLRGEDEIAAVTALSERFPDARITLDPNGAWSL 248
Query: 243 QEAV 246
+EAV
Sbjct: 249 KEAV 252
>pdb|3V4B|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And L-Tartrate
pdb|3V3W|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And Glycerol
Length = 424
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTTL 205
AA+++AL D AK +MPL++L GG S T ++ E K + +G+ +
Sbjct: 109 AAIDVALWDIKAKLANMPLYQLLGGKSRERILSYTHANGKDLDSTLEAVRKAKDKGYKAI 168
Query: 206 KLKVG 210
+++ G
Sbjct: 169 RVQCG 173
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 308 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
NLA I KL + + G L I + R + GG+V+ L++G GH++ CFK
Sbjct: 775 NLASAHPIFKLLQPHIYGVLAIDTIGRKELIG--SGGIVDQSLSLGGGGHVTFMEKCFKE 832
Query: 367 IDLDT---PLLLSEDPVLDGYEVSGAVYK 392
++L P L + V D ++ G Y+
Sbjct: 833 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 861
>pdb|3NXL|A Chain A, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|B Chain B, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|C Chain C, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|D Chain D, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
Length = 475
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 199 KQGFTTLKLKVGKNLKED-IEVLRAIRAVHPDSSFILDANEGYKPQEAV 246
+ GF KLK G D E + AI+A PD+ LD N + EAV
Sbjct: 218 RYGFADFKLKGGVXAGADEXEAIAAIKACFPDARATLDPNGAWSLDEAV 266
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 315 IKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--- 371
KL + + G L I + R + GG+V+ L++G GH++ CFK ++L
Sbjct: 416 FKLLQPHIYGVLAIDTIGRKELIG--SGGIVDQSLSLGGGGHVTFMEKCFKEVNLQDYHL 473
Query: 372 PLLLSEDPVLDGYEVSGAVYK 392
P L + V D ++ G Y+
Sbjct: 474 PNALKKRGVDDPSKLPGFYYR 494
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 308 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
NLA I KL + + G L I + R + GG+V+ L++G GH++ CFK
Sbjct: 405 NLASAHPIFKLLQPHIYGVLAIDTIGRKELIG--SGGIVDQSLSLGGGGHVTFMEKCFKE 462
Query: 367 IDLDT---PLLLSEDPVLDGYEVSGAVYK 392
++L P L + V D ++ G Y+
Sbjct: 463 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 491
>pdb|4IL0|A Chain A, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|B Chain B, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|C Chain C, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|D Chain D, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|E Chain E, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|F Chain F, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|G Chain G, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|H Chain H, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
Length = 466
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEA++ + GF KLK G +++I+ +RA++ PD+ +D N +
Sbjct: 207 VVRLAEASQ-----DRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLL 261
Query: 243 QEAVEVLEKLYEM 255
EA+ + + L ++
Sbjct: 262 DEAISLCKGLNDV 274
>pdb|3H8A|A Chain A, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
pdb|3H8A|B Chain B, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
pdb|3H8A|C Chain C, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
pdb|3H8A|D Chain D, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
Length = 432
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 227 HPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVL-FEQPVHRDDWEGLGHVSHIAKD 283
+ D ++L + N+ + +E LE+L + P++ E + DW+G + + + D
Sbjct: 253 YKDGKYVLAGEGNKAFTSEEFTHFLEELTKQ--YPIVSIEDGLDESDWDGFAYQTKVLGD 310
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 341
K + V D + +K+ ++ +A+ I IK ++G L L I++ + +G +I
Sbjct: 311 KIQL-VGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVI 368
>pdb|1E9I|A Chain A, Enolase From E.Coli
pdb|1E9I|B Chain B, Enolase From E.Coli
pdb|1E9I|C Chain C, Enolase From E.Coli
pdb|1E9I|D Chain D, Enolase From E.Coli
pdb|2FYM|A Chain A, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E.
pdb|2FYM|C Chain C, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E.
pdb|2FYM|D Chain D, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E.
pdb|2FYM|F Chain F, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E
Length = 431
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 227 HPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVL-FEQPVHRDDWEGLGHVSHIAKD 283
+ D ++L + N+ + +E LE+L + P++ E + DW+G + + + D
Sbjct: 252 YKDGKYVLAGEGNKAFTSEEFTHFLEELTKQ--YPIVSIEDGLDESDWDGFAYQTKVLGD 309
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 341
K + V D + +K+ ++ +A+ I IK ++G L L I++ + +G +I
Sbjct: 310 KIQL-VGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVI 367
>pdb|4GYP|C Chain C, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|D Chain D, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 458
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEA++ + GF KLK G +++I+ +RA++ PD+ +D N +
Sbjct: 199 VVRLAEASQ-----DRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLL 253
Query: 243 QEAVEVLEKLYEM 255
EA+ + + L ++
Sbjct: 254 DEAISLCKGLNDV 266
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 308 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
NLA I KL + + G L I + R GG+V+ L++G GH++ CFK
Sbjct: 405 NLASAHPIFKLLQPHIYGVLAIDTIGRKELWG--SGGIVDQSLSLGGGGHVTFMEKCFKE 462
Query: 367 IDLDT---PLLLSEDPVLDGYEVSGAVYK 392
++L P L + V D ++ G Y+
Sbjct: 463 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 491
>pdb|3PWI|A Chain A, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
pdb|3PWI|B Chain B, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
Length = 446
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNL-KEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 243 QEAVEVLEKL 252
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|3PWG|A Chain A, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|B Chain B, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|C Chain C, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|D Chain D, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
Length = 446
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNL-KEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 243 QEAVEVLEKL 252
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNL-KEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 243 QEAVEVLEKL 252
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 308 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
NLA I KL + + G L I + R GG+V+ L++G GH++ CFK
Sbjct: 405 NLASAHPIFKLLQPHIYGVLAIDTIGRKELAG--SGGIVDQSLSLGGGGHVTFMEKCFKE 462
Query: 367 IDLDT---PLLLSEDPVLDGYEVSGAVYK 392
++L P L + V D ++ G Y+
Sbjct: 463 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 491
>pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|4GYP|A Chain A, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|B Chain B, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 446
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNL-KEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 243 QEAVEVLEKL 252
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 446
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNL-KEDIEVLRAIRAVHPDSSFILDANEGYKP 242
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 243 QEAVEVLEKL 252
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|2O56|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|C Chain C, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|D Chain D, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|E Chain E, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|F Chain F, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|G Chain G, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|H Chain H, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
Length = 407
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 35/161 (21%)
Query: 139 GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS----NTITTDITIP---------IV 185
G F++ + +++AL D K+ +PL+++ GG S T + + +
Sbjct: 92 GGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLT 151
Query: 186 SPAEAAELASKYRKQGFTTLKLK-------------------VGKNLKEDIEVLRAIR-A 225
P + A+ A +G+ +K+ K L+ + + AIR A
Sbjct: 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDA 211
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 266
V PD I + + A++ + E+G+ +E+PV
Sbjct: 212 VGPDVDIIAEMHAFTDTTSAIQFGRMIEELGI--FYYEEPV 250
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 131 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 181
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|3P0W|A Chain A, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|B Chain B, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|C Chain C, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|D Chain D, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
Length = 470
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAV 246
+ GF KLK G E++E + AI+A P + LD N + EA+
Sbjct: 214 RYGFADFKLKGGVMPGAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAI 262
>pdb|3VC5|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Phosphate
pdb|3VC6|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Magnesium And Formate
pdb|4DHG|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|B Chain B, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|C Chain C, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|D Chain D, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
Length = 441
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 145 VRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITI----------------PIVSP 187
V AA E+A +D K+ P+ L GG V + + + P + P
Sbjct: 130 VFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAYLFYKWAGHPGKPEDRFGPALDP 189
Query: 188 ----AEAAELASKYRKQGFTTLKLKVGKNLKE-DIEVLRAIRAVHPDSSFILDANEGYKP 242
A+A L +Y GF ++KLK G E + E ++A+R P LD N +
Sbjct: 190 DGIVAQARLLIGEY---GFRSIKLKGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTV 246
Query: 243 QEAVEVLEKL 252
+ ++ V L
Sbjct: 247 ETSIRVGRAL 256
>pdb|4HNL|A Chain A, Crystal Structure Of Enolase Egbg_01401 (Target
Efi-502226) From Enterococcus Gallinarum Eg2
Length = 421
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK------Q 200
+ ++MAL D + MPL++L GG + T IP + A A L Y +
Sbjct: 113 SGIDMALWDIKGQLADMPLYQLLGGKART-----AIPAYTHAVADNLDDLYHEIDRFLAA 167
Query: 201 GFTTLKLKVG 210
G+ ++ ++G
Sbjct: 168 GYRYIRCQLG 177
>pdb|4G7F|A Chain A, Crystal Structure Of Enolase From Trypanosoma Cruzi
Length = 429
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319
V E P +DD++G ++ K K V V D + ++ +K ++ + + +K+ +
Sbjct: 288 VSLEDPYDQDDFDGFAGITEALKGKAQV-VGDDLTVTNVSRIKTAIEKKACNSLLLKINQ 346
Query: 320 VGVLG-ALEIIEVVRASGLNLMI 341
+G + A+E + ++G ++M+
Sbjct: 347 IGTITEAIEASKFCMSNGWSVMV 369
>pdb|1L8P|A Chain A, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 319 KVGVLG-ALEIIEVVRASGLNLMI 341
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1P48|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P48|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 319 KVGVLG-ALEIIEVVRASGLNLMI 341
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1P43|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P43|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 319 KVGVLG-ALEIIEVVRASGLNLMI 341
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1ELS|A Chain A, Catalytic Metal Ion Binding In Enolase: The Crystal
Structure Of Enolase-Mn2+-Phosphonoacetohydroxamate
Complex At 2.4 Angstroms Resolution
pdb|1NEL|A Chain A, Fluoride Inhibition Of Yeast Enolase: Crystal Structure Of
The Enolase-mg2+-f--pi Complex At 2.6-angstroms
Resolution
pdb|3ENL|A Chain A, Refined Structure Of Yeast Apo-Enolase At 2.25 Angstroms
Resolution
pdb|4ENL|A Chain A, Crystal Structure Of Holoenzyme Refined At 1.9 Angstroms
Resolution: Trigonal-Bipyramidal Geometry Of The Cation
Binding Site
pdb|5ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|6ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|7ENL|A Chain A, Mechanism Of Enolase: The Crystal Structure Of
Enolase-Mg2+- Phosphoglycerate(Slash)
Phosphoenolpyruvate Complex At 2.2-Angstroms Resolution
Length = 436
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 319 KVGVLG-ALEIIEVVRASGLNLMI 341
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1EBG|A Chain A, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBG|B Chain B, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBH|A Chain A, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1EBH|B Chain B, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2AL1|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
pdb|2AL1|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 319 KVGVLG-ALEIIEVVRASGLNLMI 341
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|2AL2|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 319 KVGVLG-ALEIIEVVRASGLNLMI 341
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,347,346
Number of Sequences: 62578
Number of extensions: 444934
Number of successful extensions: 1526
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 207
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)