BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014886
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34508|AEEP_BACSU L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB
PE=1 SV=1
Length = 366
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 188/360 (52%), Gaps = 20/360 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI-- 62
Query: 110 KASEACEVLKESPAMALGSVFGV------VAGLLPGHQFASVRAAVEMALIDAVAKSVSM 163
S VLK PA+ S+ G + LL G+ S +AAVEMAL D A+ +
Sbjct: 63 -ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNM--SAKAAVEMALYDGWAQMCGL 117
Query: 164 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRA 222
PL+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++
Sbjct: 118 PLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQE 177
Query: 223 IRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
IR V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+
Sbjct: 178 IRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVT--- 234
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
D + ADES + ++++ AD+INIKL K G+ GA +I + A G+ M
Sbjct: 235 -DATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECM 293
Query: 341 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+G M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 294 VGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
>sp|Q9WXM1|AEEP_THEMA L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1
Length = 345
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 7/316 (2%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E++
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI 182
+F + L F S++AAV+ A +DA+++ + + L GG + I TD T+
Sbjct: 79 VRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTV 135
Query: 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN GY
Sbjct: 136 GIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQ 195
Query: 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302
+EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+ DV
Sbjct: 196 KEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKFDVM 251
Query: 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362
++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+ L + + H + G G
Sbjct: 252 RLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTG 311
Query: 363 CFKFIDLDTPLLLSED 378
F+F DLD+ L+L E+
Sbjct: 312 AFEFHDLDSHLMLKEE 327
>sp|Q97MK4|AEEP_CLOAB L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=CA_C0192 PE=1 SV=1
Length = 358
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 186/345 (53%), Gaps = 18/345 (5%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
L+VPL PF A ++ V +V ++I G VG+G A VT + ++ ++ +
Sbjct: 11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDITES--IEGAINN 68
Query: 116 EVLKESPAMALGSVFGVVAGL---LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
+ + M + ++ L + G+ S +AAV++AL D + PL++L GG
Sbjct: 69 YIKRSIVGMDIEDFEAILIKLDNCIVGN--TSAKAAVDIALYDLYGQRYGAPLYKLLGGF 126
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 231
N + TDITI + SP E + + K G+ TLK+KVGKN K DI+ +R IR A+ + +
Sbjct: 127 RNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEVN 186
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
+DAN+G++P+EA+ L ++ G+ L EQPV + EGL V+ D + V A
Sbjct: 187 LRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVMA 242
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES S D ++++ D+INIKL K G+ AL+I + G+ M+G M+E +++
Sbjct: 243 DESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKVS 302
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 395
+ A HL+A IDLD P+L S D V V GA+Y +N
Sbjct: 303 VTAAVHLAAAKRIITKIDLDGPVLCSRDDV-----VGGAMYDNSN 342
>sp|O33949|CATB2_ACILW Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3
SV=2
Length = 385
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 177/377 (46%), Gaps = 27/377 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
V ++ E ++VP I P ++ + ++ V +RI ++G VG GE + + ++
Sbjct: 6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEES 65
Query: 106 TAMVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+K + +LK A G+ + GL G++FA R+AVE AL DA A+ +
Sbjct: 66 PESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA--RSAVETALFDAQAQRLG 123
Query: 163 MPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLK 214
+PL LFGG V+ T+ + T + AE A ++R KLK+G + L
Sbjct: 124 VPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHR-----VFKLKIGSRALA 178
Query: 215 EDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+D+ + AI +A+ +D N+ + EA+ ++ + V L EQP+ ++ G
Sbjct: 179 DDVAHVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAENRAG 236
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVV 332
L ++ +A+ V + ADE+ D + ADV +K+A+ G L GA + +
Sbjct: 237 LKRLTDLAQ----VPIMADEALHGPADAFALASARAADVFAVKIAQSGGLSGAANVAAIA 292
Query: 333 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVY 391
A+ ++L G M+E + + L + G K+ +L PLLL+E+ + + V
Sbjct: 293 LAANIDLYGGTMLEGAVGTIASAQLFSTFGELKWGTELFGPLLLTEEILTEPLRYENFVL 352
Query: 392 KFTNARGHGGFLHWDNI 408
G G L WD I
Sbjct: 353 HLPQGPGLGITLDWDKI 369
>sp|Q43931|CATB_ACIAD Muconate cycloisomerase 1 OS=Acinetobacter sp. (strain ADP1)
GN=catB PE=3 SV=2
Length = 370
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 166/337 (49%), Gaps = 28/337 (8%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+++P I P ++ + + V I+I +G VGWGEA + + ++ VKA+
Sbjct: 10 VDIPTIRPHKLSVTTMQTQTLVLIKIITEDGIVGWGEATTIGGLNYGEESPESVKANIDT 69
Query: 116 E----VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
+L + + ++ + G++FA + A++ AL++ AK +++P+ L GG
Sbjct: 70 YFKPLLLSIKAPLNVAQTLKLIRKSINGNRFA--KCAIQTALLEIQAKRLNVPVSELLGG 127
Query: 172 VSNTITTDITIPIV-------SPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAI 223
+P++ + + AE + T KLK+G N L+ D++ + AI
Sbjct: 128 RIRD-----RLPVLWTLASGDTDKDIAEAKKMIELKRHNTFKLKIGSNPLQHDVDHVIAI 182
Query: 224 -RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282
+A+ P+ S +D N + E V+ +++L + G+ L EQP ++ + L ++
Sbjct: 183 KKALGPEISVRVDVNRAWSELECVKGIQQLQDGGID--LIEQPCAIENTDALARLTA--- 237
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 341
+F V++ ADE D +I K + ADV +K+ + G++ A E+ ++ R +G++L
Sbjct: 238 -RFDVAIMADEVLTGPDSAYRIAKKSGADVFAVKVEQSGGLIEACEVAKIARLAGISLYG 296
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSE 377
G M+E + + H + +F +L PLLL++
Sbjct: 297 GTMLEGPVGSIASAHAFSTFETLEFGTELFGPLLLTQ 333
>sp|P51981|AEEP_ECOLI L-Ala-D/L-Glu epimerase OS=Escherichia coli (strain K12) GN=ycjG
PE=1 SV=2
Length = 321
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 146/322 (45%), Gaps = 28/322 (8%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVV-ELEEEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTIT 177
P + G + +LP + R A++ AL D A+ L L G + T+
Sbjct: 64 SVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPETVI 120
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L E + AIR PD++ I+DAN
Sbjct: 121 TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIVDAN 178
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 179 ESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADESCHT 230
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+ A
Sbjct: 231 RSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALP 288
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + F DLD P L+ D
Sbjct: 289 LVPQVS---FADLDGPTWLAVD 307
>sp|O34514|MENC_BACSU o-succinylbenzoate synthase OS=Bacillus subtilis (strain 168)
GN=menC PE=1 SV=1
Length = 371
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 150/313 (47%), Gaps = 24/313 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTA--MVKASEACEVLKES---PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
T M+K V+ P+ S+ G++ A +A +E A+ D A
Sbjct: 62 IGTCLHMLKDFFIPNVVGREFNHPSEVPDSL-----ARYKGNRMA--KAGLESAVWDIYA 114
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIE 218
K + L GG + + + + + + + Y+K+G+ +K+K+ +D+E
Sbjct: 115 KKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDVE 172
Query: 219 VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD H+
Sbjct: 173 LVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDIVDHRHLQ 229
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGL 337
K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ + +
Sbjct: 230 KHLK----TAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHHM 285
Query: 338 NLMIGGMVETRLA 350
+ GGM+ET ++
Sbjct: 286 QVWCGGMLETGIS 298
>sp|P42428|TFDD2_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=tfdDII PE=3 SV=2
Length = 372
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 25/316 (7%)
Query: 76 NVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKASEACEVLKESPAMALGSVFG 131
+V IR+ G VG GE+ P P + + + A + A V+ E PA+ +
Sbjct: 23 SVLIRLHTKGGIVGIGESITPCGPWWSGDSVEAIQATINHYLAPLVVGE-PALDASRIMA 81
Query: 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA 191
+ G + G+ FA +A +EMAL+DAV K V P+ L GG + P+ +
Sbjct: 82 KLHGRVAGNAFA--KAGIEMALLDAVGKIVDAPIHVLLGGRFRD-RLSVAWPLATGDVNQ 138
Query: 192 ELASKYR-----KQGFTTLKLKVGK-NLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQE 244
E+ +R K G KLK+G L +D+ AI + + +S +D NE +
Sbjct: 139 EVDEAFRMLEAGKAG--AFKLKMGALPLAQDLRRALAIAKELEGKASLRVDPNEAWDEPT 196
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304
+ L L GV + EQPV R + + + + A+ + DE +SL D ++
Sbjct: 197 TMRALAPLEAAGVE--IIEQPVARWNLDAMARIHRQARSMLLI----DEGVQSLHDASEV 250
Query: 305 VKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363
VK A ++++K+ K G + A + ++ A G+++ +G +ET + L+A +
Sbjct: 251 VKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAASIES 310
Query: 364 FKF-IDLDTPLLLSED 378
+ ++ PLL+ ED
Sbjct: 311 LPYGGEVIGPLLIEED 326
>sp|P27099|TCBD_PSESQ Chloromuconate cycloisomerase OS=Pseudomonas sp. (strain P51)
GN=tcbD PE=1 SV=1
Length = 370
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAEL 193
S +AA+++AL D A+++++ + L GG T +IPI A E+
Sbjct: 99 SAKAAIDIALHDLKARALNLSIADLIGGTMRT-----SIPIAWTLASGDTARDIDSALEM 153
Query: 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEK 251
R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A + +
Sbjct: 154 IETRRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPR 210
Query: 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311
L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ + + D
Sbjct: 211 LEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDHAVD 264
Query: 312 VINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
++KL + G+ L++ V A+G++ G M+++ + A H+ A L +
Sbjct: 265 AFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPY 320
>sp|P08310|CATB_PSEPU Muconate cycloisomerase 1 OS=Pseudomonas putida GN=catB PE=1 SV=4
Length = 375
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 27/332 (8%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA---SEACEVLK 119
P +A + V IR+ S+G G GEA + + + +KA + L
Sbjct: 23 PHKLAMHTMQTQTLVLIRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALV 82
Query: 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-------V 172
PA + + + L G+ FA ++ +E AL+DA K + +P+ L GG V
Sbjct: 83 GLPADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRLGLPVSELLGGRVRDSLEV 140
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSS 231
+ T+ + T + AEA + R + F KLK+G N L +D++ + AI+ DS+
Sbjct: 141 AWTLASGDTARDI--AEAQHMLEIRRHRVF---KLKIGANPLAQDLKHVVAIKRELGDSA 195
Query: 232 FI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+ +D N+ + +A+ + L + G+ L EQP+ R + G ++ + +
Sbjct: 196 SVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRSGQVRLNQ----RSPAPIM 249
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEVVRASGLNLMIGGMVETRL 349
ADES S++D + A + +K+AK G A L ++ A+G+ L G M+E +
Sbjct: 250 ADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLEGSI 309
Query: 350 AMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
+ H L + +L PLLL+E+ V
Sbjct: 310 GTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 341
>sp|P95608|CATB_RHOOP Muconate cycloisomerase 1 OS=Rhodococcus opacus GN=catB PE=1 SV=1
Length = 373
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 39/347 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQTAMV 109
E L+VPL+ P AT+ + + + + + G G+GE P P E +T
Sbjct: 10 ETTILDVPLVRPHKFATTSMTAQPLLLVAVTTAGGVTGYGEGVVPGGPWWGGESVETMQA 69
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLP-------GHQFASVRAAVEMALIDAVAKSVS 162
V + + LG + G++P +FA +AAV++AL DA A+S+
Sbjct: 70 I------VERYIVPVLLGRGVDEITGIMPDIERVVANARFA--KAAVDVALHDAWARSLG 121
Query: 163 MPLWRLFGGVSNTITTDITIPI-VSPA-----EAAELASKYRKQGFTTLKLKVGKNLKED 216
+P+ L GG + D+T + +PA EA +L R F KLK+G L
Sbjct: 122 VPVHTLLGGAFRK-SVDVTWALGAAPAEEIIEEALDLVESKRHFSF---KLKMGA-LDPA 176
Query: 217 IEVLRAI---RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
++ R + +A+ + +D N + A++ + +L E GV L EQP + E
Sbjct: 177 VDTARVVQIAQALQGKAGVRIDVNARWDRLTALKYVPRLVEGGVE--LIEQPTPGEQLEV 234
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVV 332
L ++ + V V ADES ++ D ++ + ADVI +K K G L + E++ +
Sbjct: 235 LAELNRLVP----VPVMADESVQTPHDALEVARRGAADVIALKTTKCGGLQKSREVVAIA 290
Query: 333 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSED 378
+A+G+ +E + + H + F +L PLL SE+
Sbjct: 291 KAAGIACHGATSIEGPIGTAASIHFACAEPGIDFGTELFGPLLFSEE 337
>sp|Q9RNZ9|TFDD_DELAC Chloromuconate cycloisomerase OS=Delftia acidovorans GN=tfdD PE=1
SV=2
Length = 370
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 28/248 (11%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAEL 193
S +AA+++AL D A+++++ + L GG T +IPI A E+
Sbjct: 99 SAKAAIDIALHDLKARALNLSIADLIGG-----TMRKSIPIAWTLASGDTARDIDSALEM 153
Query: 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEK 251
R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A + +
Sbjct: 154 IEARRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDKASVRVDVNQGWDEQTASIWIPR 210
Query: 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311
L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ + D
Sbjct: 211 LEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDRAVD 264
Query: 312 VINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDL 369
++KL + G+ L++ + A+G++ G M+++ + A H+ A L + +L
Sbjct: 265 AFSLKLCNMGGIANTLKVAAIAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGCEL 324
Query: 370 DTPLLLSE 377
P +LS+
Sbjct: 325 IGPWVLSD 332
>sp|P83763|CBNB_CUPNE Chloromuconate cycloisomerase CbnB OS=Cupriavidus necator GN=cbnB
PE=3 SV=1
Length = 370
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 28/248 (11%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAEL 193
S +AA+++AL D A+++++ + L GG T +IPI A E+
Sbjct: 99 SAKAAIDIALHDLKARALNLSIADLIGG-----TMRKSIPIAWTLASGDTARDIDSALEM 153
Query: 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEK 251
R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A + +
Sbjct: 154 IEARRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDKASVRVDVNQGWDEQTASIWIPR 210
Query: 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311
L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ + D
Sbjct: 211 LEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDRAVD 264
Query: 312 VINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDL 369
++KL + G+ L++ + A+G++ G M+++ + A H+ A L + +L
Sbjct: 265 AFSLKLCNMGGIANTLKVAAIAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGCEL 324
Query: 370 DTPLLLSE 377
P +LS+
Sbjct: 325 IGPWVLSD 332
>sp|O33946|CATB1_ACILW Muconate cycloisomerase 1-1 OS=Acinetobacter lwoffii GN=catB1 PE=3
SV=1
Length = 379
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 173/372 (46%), Gaps = 35/372 (9%)
Query: 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT-AED 103
+V ++R E +++P I P ++ + + + +++ ++G VG GE + + +
Sbjct: 3 SVTIERIETCLVDLPTIRPHKLSVATMYGQTLMLVKVYCTDGAVGIGEGTTIAGMAYGPE 62
Query: 104 QQTAMVKASEA--CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
AM A +A L A + ++ + L+ + FA ++A+E AL+DA K +
Sbjct: 63 SPEAMKLAIDAYFAPALVGKDATRIQTLMAHLGKLVKINHFA--KSALETALLDAHGKRL 120
Query: 162 SMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNL 213
+ + L GG V+ T+ + T + AEA ++ R F KLK+G K L
Sbjct: 121 GVAVSELLGGRRRERLPVAWTLASGDTSRDI--AEAEQMIEVRRHNVF---KLKIGAKEL 175
Query: 214 KEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
K DI+ + I R V ++ +D N + +A + L + G L EQPV
Sbjct: 176 KTDIKHVAEIKRVVGEHAAVRVDVNMAWSETQAAWAIPALADAGCE--LVEQPV------ 227
Query: 273 GLGHVSHIAK--DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEII 329
+ +A+ +F V++ ADE + D+ +I + N ADV IK+ + G+ A +
Sbjct: 228 --ASAAALARLMRRFPVALMADEILQGPDNAFEIARVNGADVFAIKIEQSGGLFAAQRVA 285
Query: 330 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSG 388
+ A+G+ L G M+E + + HL A ++ +L PLL++E+ + + S
Sbjct: 286 AIADAAGIELYGGTMLEGAFSTVASAHLFASFANLQWGTELFGPLLITEEILTKPLDYSD 345
Query: 389 AVYKFTNARGHG 400
Y+ T G G
Sbjct: 346 --YQLTVPDGPG 355
>sp|P05404|TFDD1_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=tfdDI PE=1 SV=4
Length = 370
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 28/280 (10%)
Query: 143 ASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAE 192
AS +AAVEMAL+D A+++ + + L GG + IPI A E
Sbjct: 98 ASAKAAVEMALLDLKARALGVSIAELLGGPLRS-----AIPIAWTLASGDTKRDLDSAVE 152
Query: 193 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLE 250
+ + R F K+K+G ++ ++D+ + A+ +++ +D N+ + Q A +
Sbjct: 153 MIERRRHNRF---KVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIP 209
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310
+L +GV L EQPV R++ + L +S D V++ ADES +L + +
Sbjct: 210 ELEALGVE--LIEQPVGRENTQALRRLS----DNNRVAIMADESLSTLASAFDLARDRSV 263
Query: 311 DVINIKLAKVGVLGALE-IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-ID 368
DV ++KL +G + A + I V ASG+ G M+++ + A L + + F +
Sbjct: 264 DVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCE 323
Query: 369 LDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408
L P +L++ + E+ + GHG L D +
Sbjct: 324 LIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363
>sp|P11452|CLCB_PSEPU Chloromuconate cycloisomerase OS=Pseudomonas putida GN=clcB PE=3
SV=2
Length = 370
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 117/233 (50%), Gaps = 21/233 (9%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASK 196
S +AA+++AL D A+S+++PL L GG ++ T+ + T ++ AE E+ +
Sbjct: 99 SAKAAIDVALHDLKARSLNLPLSDLIGGAIQQGIPIAWTLASGDTQRDIAIAE--EMIER 156
Query: 197 YRKQGFTTLKLKVG-KNLKEDIE-VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254
R F K+K+G ++ +D+ + + I V ++ +D N+ + A + +L
Sbjct: 157 RRHNRF---KIKLGVRSPADDLRHIEKIIERVGDRAAVRVDINQAWDENTASVWIPRLEA 213
Query: 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314
GV L EQPV R +++ L +S GV++ ADES SL ++ + + D +
Sbjct: 214 AGVE--LVEQPVARSNFDALRRLSA----DNGVAILADESLSSLASAFELARHHCVDAFS 267
Query: 315 IKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
+KL + GV L++ + ASG+ G M+++ + A H+ A L F
Sbjct: 268 LKLCNMGGVANTLKVAAIAEASGIASYGGTMLDSSIGTAAALHVYATLPTMPF 320
>sp|P0CC06|Y4701_DICDI Enolase superfamily member DDB_G0284701 OS=Dictyostelium discoideum
GN=DDB_G0284701 PE=3 SV=1
Length = 437
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 125/269 (46%), Gaps = 43/269 (15%)
Query: 140 HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT------ITTDITIPIVSPAEAAEL 193
+ +AS R A+EMAL+D K + P+++L + T + + ++ +
Sbjct: 148 YSYAS-RCAIEMALLDGWGKFLKQPIYKLINIPESESLKPFYYTISMCPTMEEIMDSTDF 206
Query: 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-------AVHPDSSFILDANEGYKPQEAV 246
SKY GF LK+K+ ++++ + ++ +++ + S +DAN + P A
Sbjct: 207 GSKY--TGF--LKIKLDADVEKGMNIIDSVQKRLLNNNSTRTISKISVDANSSWTPSVAR 262
Query: 247 EVLEKLYEMGVTPVLFEQP--------VHRDDWEGLGHVSHIA------KDKFGVSVAAD 292
+ LEKL M + EQP V++D + H++ +DK G+ + AD
Sbjct: 263 KYLEKLSPMADLISMVEQPFPIETLKTVNKDQKIDIQHLNEWVSIKKEYQDK-GLLIFAD 321
Query: 293 ES-C--RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETR 348
ES C + LD + ++V G +NIKL K G+ L + + GL IG MV +
Sbjct: 322 ESICTEKDLDGLVQLVHG-----VNIKLEKTGGIRPGLSTLLKAKELGLKTWIGSMVASS 376
Query: 349 LAMGFAGHLSAGLGCFKFIDLDTPLLLSE 377
L + A HL L F DLD LL+ +
Sbjct: 377 LNVSAAAHLLCSLSDFGG-DLDGGLLIDD 404
>sp|Q2KIA9|ENOF1_BOVIN Mitochondrial enolase superfamily member 1 OS=Bos taurus GN=ENOSF1
PE=2 SV=1
Length = 443
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Query: 188 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAV 246
A +L S+ K G+T K+KVG +L++DI R +R + P+ + ++DAN+ + EAV
Sbjct: 202 ATLKQLCSEALKDGWTRFKVKVGADLQDDIRRCRLVRNMIGPEKTLMMDANQRWDVPEAV 261
Query: 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306
E + KL E P+ E+P DD G +S A G+ VA E C + K++++
Sbjct: 262 EWMTKLAEF--KPLWIEEPTSPDDILGHAAISK-ALAPLGIGVATGEQCHNRVIFKQLLQ 318
Query: 307 GNLADVINIKLAKVG 321
+ I ++G
Sbjct: 319 AKALKFLQIDSCRLG 333
>sp|Q6INX4|ENOF1_XENLA Mitochondrial enolase superfamily member 1 OS=Xenopus laevis
GN=enosf1 PE=2 SV=1
Length = 445
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 244
S + +L S K+G+T K+KVG +LK+DI IR + PD+ +LDAN+ + QE
Sbjct: 200 SDEQLKKLCSDALKEGWTRFKVKVGADLKDDIRRCELIRDMIGPDNIMMLDANQRWDVQE 259
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVK 302
A+ ++ L + P+ E+P DD LGH + I+K+ + VA E C + K
Sbjct: 260 AISWVKDLAKY--KPLWIEEPTSPDD--ILGHAT-ISKELSPVNIGVATGEQCHNRVMFK 314
Query: 303 KIVKGNLADVINIKLAKVG 321
+ ++ + I ++G
Sbjct: 315 QFLQAKALQYLQIDSCRLG 333
>sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens
GN=ENOSF1 PE=1 SV=1
Length = 443
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
+L ++ K G+T K+KVG +L++D+ + IR + P+ + ++DAN+ + EAVE +
Sbjct: 206 QLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMS 265
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVKKIVKGN 308
KL + P+ E+P DD LGH + I+K G+ +A E C + K++++
Sbjct: 266 KLAKF--KPLWIEEPTSPDD--ILGHAT-ISKALVPLGIGIATGEQCHNRVIFKQLLQAK 320
Query: 309 LADVINIKLAKVG 321
+ I ++G
Sbjct: 321 ALQFLQIDSCRLG 333
>sp|A0PLU7|MENC_MYCUA o-succinylbenzoate synthase OS=Mycobacterium ulcerans (strain
Agy99) GN=menC PE=3 SV=1
Length = 327
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSF 232
I + T+P V PA+ EL +++ G T K+KV G+ L D+E + A+RA+ P +
Sbjct: 80 IPINATVPAVPPAQVPELLARF--PGARTAKVKVAEPGQTLASDVERVNAVRALVP--TV 135
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+DAN G+ +A + L G L EQP +G ++ + + + V +AAD
Sbjct: 136 RVDANGGWSVDQAAQAAVALTADGPLEYL-EQPCAT-----VGELAEL-RRRIEVPIAAD 188
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI-----IEVVRASGLNLMIG 342
E+ R +D +V+ ADV +K+A + GV L+I I VV +S L+ +G
Sbjct: 189 EAIRKAEDPLAVVRAGAADVAVLKVAPLGGVWALLDIAAQIDIPVVISSALDSAVG 244
>sp|B2HRP4|MENC_MYCMM o-succinylbenzoate synthase OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=menC PE=3 SV=1
Length = 327
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSF 232
I + T+P V PA+ EL +++ G T K+KV G+ L D+E + A+RA+ P +
Sbjct: 80 IPINATVPAVPPAQVPELLARF--PGARTAKVKVAEPGQTLASDVERVNAVRALVP--TV 135
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+DAN G+ +A + L G L EQP +G ++ + + + V +AAD
Sbjct: 136 RVDANGGWSVDQAAQAAVALTADGPLEYL-EQPCAT-----VGELAEL-RRRIEVPIAAD 188
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI-----IEVVRASGLNLMIG 342
E+ R +D +V+ ADV +K+A + GV L+I I VV +S L+ +G
Sbjct: 189 EAIRKAEDPLAVVRAGAADVAVLKVAPLGGVWALLDIAAQIDIPVVISSALDSAVG 244
>sp|Q8P3K2|FUCD_XANCP L-fuconate dehydratase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC4069
PE=1 SV=1
Length = 441
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310
+L E + + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIAWI--EEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 311 DVINIKLAKVG 321
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>sp|Q5RAT4|ENOF1_PONAB Mitochondrial enolase superfamily member 1 OS=Pongo abelii
GN=ENOSF1 PE=2 SV=1
Length = 443
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 250
+L ++ K G+T K+KVG +L++D+ + IR + + + ++DAN+ + EAVE +
Sbjct: 206 QLCAQALKDGWTRFKVKVGADLQDDVRRCQIIRDMIGLEKTLMMDANQRWDVPEAVEWMS 265
Query: 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVKKIVKGN 308
KL + P+ E+P DD LGH + I+K G+ +A E C + K++++
Sbjct: 266 KLAKF--KPLWIEEPTSPDD--ILGHAT-ISKALVPLGIGIATGEQCHNRVIFKQLLQAK 320
Query: 309 LADVINIKLAKVG 321
+ I ++G
Sbjct: 321 ALQFLQIDSCRLG 333
>sp|Q9CBB2|MENC_MYCLE Probable o-succinylbenzoate synthase OS=Mycobacterium leprae
(strain TN) GN=menC PE=3 SV=1
Length = 334
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 24/183 (13%)
Query: 171 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVH 227
G + I + T+P VS + E+ +++ G T K+KV G+NL +D++ + A+R +
Sbjct: 72 GRRDRIPINATVPAVSATQVPEVLARF--PGVRTAKVKVAEPGQNLADDVDRVNAVRELV 129
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKF 285
+ +DAN G+ + A + L G L EQP V+ +A + +
Sbjct: 130 --ETVRVDANGGWSVEAAAQAAVALTADGPLEYL-EQPC--------ATVAELAALRRRV 178
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG------VLGALEIIEVVRASGLNL 339
+ +AADES R DD +V+ + ADV +K+A +G + A I VV +S L+
Sbjct: 179 DIPIAADESIRKADDPLAVVRSHAADVAVLKVAPLGGIASFLAIAAQIDIPVVVSSALDS 238
Query: 340 MIG 342
++G
Sbjct: 239 VVG 241
>sp|P11444|MANR_PSEPU Mandelate racemase OS=Pseudomonas putida GN=mdlA PE=1 SV=1
Length = 359
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 31/319 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
AM+ V E+ L F +AG + A+ A ++MA DA+ K PL
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAGYTGLIRMAA--AGIDMAAWDALGKVHETPL 123
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K K+G L +D+ V+R+IR
Sbjct: 124 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIR 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + GVT E+P + D+EG + +
Sbjct: 184 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI----QS 237
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASGLNLM 340
K V V E+ +++ K ++I ++ + A++I V +RAS L
Sbjct: 238 KLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASALAQQ 289
Query: 341 IGGMVETRLAMGFAGHLSA 359
G + + L + HL A
Sbjct: 290 FGIPMSSHLFQEISAHLLA 308
>sp|P65425|MENC_MYCTU Probable o-succinylbenzoate synthase OS=Mycobacterium tuberculosis
GN=menC PE=3 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 230
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 288
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 342
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|A5TZT3|MENC_MYCTA o-succinylbenzoate synthase OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=menC PE=3 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 230
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 288
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 342
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|C1AKN3|MENC_MYCBT o-succinylbenzoate synthase OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=menC PE=3 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 230
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 288
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 342
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|A1KG30|MENC_MYCBP o-succinylbenzoate synthase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=menC PE=3 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 230
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 288
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 342
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|P65426|MENC_MYCBO Probable o-succinylbenzoate synthase OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=menC PE=3 SV=1
Length = 326
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 230
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 288
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 342
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|O06741|YITF_BACSU Putative isomerase YitF OS=Bacillus subtilis (strain 168) GN=yitF
PE=1 SV=1
Length = 371
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 124/311 (39%), Gaps = 43/311 (13%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA----PVLPHVTA 101
+ + R E PL L P+ A IRI +G GWGE P L HV
Sbjct: 1 MKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPAL-HVGF 59
Query: 102 EDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
+ + +A GS +V + HQ A+ +AV MAL + AK+
Sbjct: 60 TKRIIPFLLGKQA------------GSRLSLVRTIQKWHQRAA--SAVSMALTEIAAKAA 105
Query: 162 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKY-----------RKQGFTTLKLKV- 209
+ L+GG IP+ + ++ + ++ K+GF +K+K+
Sbjct: 106 DCSVCELWGGRYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIG 160
Query: 210 GKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268
G + KED+ + A++ S + ILDAN+ Y A + E+ + E+P+
Sbjct: 161 GTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFK-WERYFSEWTNIGWLEEPLPF 219
Query: 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALE 327
D + + + + V VA E+ + ++ D+I + V G+ +
Sbjct: 220 DQPQDYA----MLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRD 275
Query: 328 IIEVVRASGLN 338
+++ R G+
Sbjct: 276 CLQLARYFGVR 286
>sp|Q15KI9|PHYLO_ARATH Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2
SV=2
Length = 1715
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 127/308 (41%), Gaps = 40/308 (12%)
Query: 21 QMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQV--ENVA 78
Q A + + +SF + V + V L TI + Q E
Sbjct: 967 QAAENSLGIVSASSFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPTICSDEFSQFHREGFI 1026
Query: 79 IRIELSNGCVGWGE-APVLPHVT----AEDQQTAMV------KASEACEVLKESPAMALG 127
+ + L +G +G+GE AP+ +V E Q ++ K S +L S + +
Sbjct: 1027 LSLTLEDGSIGYGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIW 1086
Query: 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF------GGVSNTITTDIT 181
S G+ A + F SVR +EMAL++A+A L + G + + I
Sbjct: 1087 SELGITASSI----FPSVRCGLEMALLNAMAVRHDSSLLGILHYQKEENGSAQPHSVQIC 1142
Query: 182 IPIVS---PAEAAELASKYRKQGFTTLKLKVGKNLK--EDIEVLRAI-RAVHPDSSFILD 235
+ S P E A +A K ++GF+ +KLKVG+ + +D V++ + RAV D
Sbjct: 1143 ALLDSEGTPLEVAYVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRAD 1202
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
AN + +EA E L E+PV D H ++ G+ VA DE
Sbjct: 1203 ANCRWTFEEAREF--GLLVNSCNLKYIEEPVQNKDDLIRFH------EETGLPVALDE-- 1252
Query: 296 RSLDDVKK 303
+LDD ++
Sbjct: 1253 -TLDDFEE 1259
>sp|A0QRG0|MENC_MYCS2 o-succinylbenzoate synthase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=menC PE=3 SV=1
Length = 321
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAV 226
+ + + + T+P VS E+ +++ G T K+KV G++L +D+ + A+R
Sbjct: 74 AALRDRVPINATVPAVSAERVPEVLARF--PGARTAKVKVAEPGQSLADDVARVNAVRES 131
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDK 284
P +DAN G+ +AVE L G L EQP V +A + +
Sbjct: 132 VP--VVRVDANGGWSVDDAVEAAAALTADGELEYL-EQP--------CATVEELAALRAR 180
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344
V +AADES R +D ++V+ + AD+ +K+A +G G ++++ + +++
Sbjct: 181 VDVPIAADESIRKAEDPLRVVRAHAADIAVLKVAPLG--GVARMLDIAAQIDIPIVVSSA 238
Query: 345 VETRLAMG 352
+++ + +G
Sbjct: 239 LDSSVGIG 246
>sp|Q57I11|DGOD_SALCH D-galactonate dehydratase OS=Salmonella choleraesuis (strain
SC-B67) GN=dgoD PE=3 SV=1
Length = 382
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE V +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGEP-----VIESRARTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|A4W4R9|DGOD_ENT38 D-galactonate dehydratase OS=Enterobacter sp. (strain 638) GN=dgoD
PE=3 SV=1
Length = 382
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E E L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHELKEYLIGQDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PAE +
Sbjct: 73 YRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPAEVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
R GF T KL N E++ V+ RAV
Sbjct: 133 KTLRNIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5BIK9|DGOD_SALPK D-galactonate dehydratase OS=Salmonella paratyphi A (strain
AKU_12601) GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|Q8ZKZ1|DGOD_SALTY D-galactonate dehydratase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|A9MWL9|DGOD_SALPB D-galactonate dehydratase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B4SY97|DGOD_SALNS D-galactonate dehydratase OS=Salmonella newport (strain SL254)
GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B4TA81|DGOD_SALHS D-galactonate dehydratase OS=Salmonella heidelberg (strain SL476)
GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5RFZ8|DGOD_SALG2 D-galactonate dehydratase OS=Salmonella gallinarum (strain 287/91 /
NCTC 13346) GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5QUN9|DGOD_SALEP D-galactonate dehydratase OS=Salmonella enteritidis PT4 (strain
P125109) GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5FN00|DGOD_SALDC D-galactonate dehydratase OS=Salmonella dublin (strain CT_02021853)
GN=dgoD PE=3 SV=1
Length = 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ V+ RAV
Sbjct: 133 EKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B6EJ59|MENC_ALISL o-succinylbenzoate synthase OS=Aliivibrio salmonicida (strain
LFI1238) GN=menC PE=3 SV=1
Length = 324
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFG 286
PD S LDAN G+ P++A + + + + F E+P HR + E L G
Sbjct: 156 PDLSLRLDANRGWTPKKAEQFANYVSPQYRSRIEFLEEPCHRPE-ESLEFSKAT-----G 209
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMV 345
+++A DE+ R D+ ++ + I IK VG +G +E++E G+ +I +
Sbjct: 210 IAIAWDETVR--DEGFEVKAQDGVAAIVIKPTLVGSVGKCIELVEQAHLLGMQAVISSSI 267
Query: 346 ETRLAMGFAGHLSA--------GLGCFKF--IDLDTPLLLSEDPV 380
E+ LA+ L+A GL + LDTP E P+
Sbjct: 268 ESSLALTQLARLAAWKTPNTIPGLDTIDLFKMQLDTPWPHCELPM 312
>sp|A6TFZ4|DGOD_KLEP7 D-galactonate dehydratase OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=dgoD PE=3
SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ G
Sbjct: 18 LKIETDEGIVGWGE-PVIEGRA----RTVEAAVHEFGDYLIGQDPARINDLWQVMYRGGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PAE +
Sbjct: 73 YRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPAEVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226
K R GF T KL N E++ ++ RAV
Sbjct: 133 KKLRGIGFDTFKL----NGCEEMGIIDNSRAV 160
>sp|Q1R4P4|DGOD_ECOUT D-galactonate dehydratase OS=Escherichia coli (strain UTI89 / UPEC)
GN=dgoD PE=3 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 37/263 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHELSDYLIGQDPSRINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ----------- 243
R+ GF T KL N E++ ++ RAV + + E + Q
Sbjct: 133 KTLREIGFDTFKL----NGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEFGLDFHGRV 188
Query: 244 --EAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
+VL K E P+ E+PV + + L +HI +AA E S
Sbjct: 189 SAPMAKVLIKELE-PYRPLFIEEPVLAEQAEYYPKLAAQTHI-------PLAAGERMFSR 240
Query: 299 DDVKKIVKGNLADVINIKLAKVG 321
D K++++ ++ L+ G
Sbjct: 241 FDFKRVLEAGGISILQPDLSHAG 263
>sp|B7LK34|DGOD_ESCF3 D-galactonate dehydratase OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=dgoD PE=3 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 37/263 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHELSDYLIGQDPSRINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ----------- 243
R+ GF T KL N E++ ++ RAV + + E + Q
Sbjct: 133 KTLREIGFDTFKL----NGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEFGLDFHGRV 188
Query: 244 --EAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
+VL K E P+ E+PV + + L +HI +AA E S
Sbjct: 189 SAPMAKVLIKELE-PYRPLFIEEPVLAEQAEYYPKLAAQTHI-------PLAAGERMFSR 240
Query: 299 DDVKKIVKGNLADVINIKLAKVG 321
D K++++ ++ L+ G
Sbjct: 241 FDFKRVLEAGGISILQPDLSHAG 263
>sp|Q0TB15|DGOD_ECOL5 D-galactonate dehydratase OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=dgoD PE=3 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 37/263 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE V +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGEP-----VIEGRARTVEAAVHELSDYLIGQDPSRINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ----------- 243
R+ GF T KL N E++ ++ RAV + + E + Q
Sbjct: 133 KTLREIGFDTFKL----NGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEFGLDFHGRV 188
Query: 244 --EAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
+VL K E P+ E+PV + + L +HI +AA E S
Sbjct: 189 SAPMAKVLIKELE-PYRPLFIEEPVLAEQAEYYPKLAAQTHI-------PLAAGERMFSR 240
Query: 299 DDVKKIVKGNLADVINIKLAKVG 321
D K++++ ++ L+ G
Sbjct: 241 FDFKRVLEAGGISILQPDLSHAG 263
>sp|A1AHM7|DGOD_ECOK1 D-galactonate dehydratase OS=Escherichia coli O1:K1 / APEC GN=dgoD
PE=3 SV=1
Length = 382
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 37/263 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE V +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGEP-----VIEGRARTVEAAVHELSDYLIGQDPSRINDLWQVMYRAGF 72
Query: 137 LPGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAELA 194
G S A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPILMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVIDGI 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ----------- 243
R+ GF T KL N E++ ++ RAV + + E + Q
Sbjct: 133 KTLREIGFDTFKL----NGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEFGLDFHGRV 188
Query: 244 --EAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
+VL K E P+ E+PV + + L +HI +AA E S
Sbjct: 189 SAPMAKVLIKELE-PYRPLFIEEPVLAEQAEYYPKLAAQTHI-------PLAAGERMFSR 240
Query: 299 DDVKKIVKGNLADVINIKLAKVG 321
D K++++ ++ L+ G
Sbjct: 241 FDFKRVLEAGGISILQPDLSHAG 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,609,792
Number of Sequences: 539616
Number of extensions: 6127292
Number of successful extensions: 19545
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 19417
Number of HSP's gapped (non-prelim): 251
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)